Citrus Sinensis ID: 025075

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
Protein Sequence
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHcccccEEEEEEcccccccEEEcccccccccEEEEEccccHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEcccHHHHHHHHcccccccEEEEEEcHHHHHHHHccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHHHHccccccccEEEccHHHHHHHHHHHHHHccccHHHcEccEEEcccHHHEEEcHHHcEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
meensclrQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYdvvntpgvtadishmdtgavvrgflgqpqlenaltgmdlviipagvprkpgmtrddlfnINAGIVRTLCEGIakccpnatvnlisnpvnstvPIAAEVFkkagtydpkkllGVTMLDVVRANTFVAEVlgldprdvdvpvvgghagvtilpllsqvkppcsftqEETEYLTNRIQNGGTEVVeakagagsaTLSMRLNLRMHASVG
Flexible Loop (DISEMBL)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpVVGGHAGVTilpllsqvkpPCSFTQEETEYLTNRIQNGGTEVVEAkagagsatlsmrlNLRMHASVG
Low Complexity Region (SEG)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEvlgldprdvdvpvvggHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered region (IsUnstruct)
**********KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQ*******************************
Disordered Region (DISOPRED)
**********************VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered Region (DISEMBL)
*****************AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Disordered Region (DISPRO)
*****************AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG*************MHAS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	258	2.2.26 [Sep-21-2011]
P19446	356	Malate dehydrogenase, gly	N/A	no	0.957	0.693	0.919	1e-129
P46488	356	Malate dehydrogenase, gly	N/A	no	0.957	0.693	0.919	1e-129
Q42972	356	Malate dehydrogenase, gly	yes	no	0.957	0.693	0.906	1e-128
P37228	353	Malate dehydrogenase, gly	yes	no	0.953	0.696	0.878	1e-125
O82399	354	Probable malate dehydroge	yes	no	0.949	0.692	0.885	1e-123
Q9ZP05	354	Malate dehydrogenase, gly	no	no	0.949	0.692	0.873	1e-122
Q43743	358	Malate dehydrogenase 1, g	N/A	no	0.949	0.684	0.877	1e-121
Q9XFW3	358	Malate dehydrogenase 2, g	N/A	no	0.949	0.684	0.873	1e-121
Q9SN86	403	Malate dehydrogenase, chl	no	no	0.887	0.568	0.685	3e-88
P17783	347	Malate dehydrogenase, mit	N/A	no	0.875	0.651	0.694	1e-85

>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Citrullus lanatus (taxid: 3654)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7

>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q42972|MDHG_ORYSJ Malate dehydrogenase, glyoxysomal OS=Oryza sativa subsp. japonica GN=Os12g0632700 PE=1 SV=3

 Score =  457 bits (1176), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 234/247 (94%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  LR + CRAKG A GFKVAILGA+GGIGQPLA+LMK+NPLVSVLHLYDVVNTPGV
Sbjct: 25  MEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGTYDPK+LLGVT LDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT EE  YLT RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P37228|MDHG_SOYBN Malate dehydrogenase, glyoxysomal OS=Glycine max PE=2 SV=2

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/246 (87%), Positives = 234/246 (95%)

Query: 2   EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
           E++ CL+++ CRAKGG +GFKVAILGAAGGIGQPLAMLMK+NPLVS+LHLYDVVNTPGVT
Sbjct: 23  EDDVCLKRSDCRAKGGVSGFKVAILGAAGGIGQPLAMLMKMNPLVSLLHLYDVVNTPGVT 82

Query: 62  ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121
           +DISHMDTGAVVRGFLGQ QLE+AL GMDLVIIPAGVPRKPGMTRDDLFNINAGIV+TLC
Sbjct: 83  SDISHMDTGAVVRGFLGQQQLEDALIGMDLVIIPAGVPRKPGMTRDDLFNINAGIVKTLC 142

Query: 122 EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181
           E IAKCCP A VN+ISNPVNSTVPIAAEVFK+AGTYDPK+LLGVTMLDVVRANTFVAEVL
Sbjct: 143 EAIAKCCPKAIVNVISNPVNSTVPIAAEVFKRAGTYDPKRLLGVTMLDVVRANTFVAEVL 202

Query: 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           G+DPRDVDVPVVGGHAG+TILPLLSQ+KPPCSFT +E EYLT RIQNGG EVVEAKAGAG
Sbjct: 203 GVDPRDVDVPVVGGHAGITILPLLSQIKPPCSFTPKEIEYLTGRIQNGGPEVVEAKAGAG 262

Query: 242 SATLSM 247
           SATLSM
Sbjct: 263 SATLSM 268

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|O82399|MDHG2_ARATH Probable malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At2g22780 PE=1 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/245 (88%), Positives = 229/245 (93%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDV N PGVTA
Sbjct: 25  DGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTA 84

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           DISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL E
Sbjct: 85  DISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSE 144

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
            IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DPKKL+GVTMLDVVRANTFVAEV+ 
Sbjct: 145 AIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMS 204

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+V+VPVVGGHAGVTILPLLSQVKPPCSFTQ+E EYLT+RIQNGGTEVVEAKAGAGS
Sbjct: 205 LDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGS 264

Query: 243 ATLSM 247
           ATLSM
Sbjct: 265 ATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9ZP05|MDHG1_ARATH Malate dehydrogenase, glyoxysomal OS=Arabidopsis thaliana GN=At5g09660 PE=1 SV=1

 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/245 (87%), Positives = 228/245 (93%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 25  KNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 84

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+PRKPGMTRDDLF INAGIV+TLCE
Sbjct: 85  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCE 144

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 145 GVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 204

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT +E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 205 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGS 264

Query: 243 ATLSM 247
           ATLSM
Sbjct: 265 ATLSM 269

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q43743|MDHG1_BRANA Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2

 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/245 (87%), Positives = 225/245 (91%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS +    CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 29  KNSVMGLESCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 88

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTLCE
Sbjct: 89  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTLCE 148

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTV IAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 149 GVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 208

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGS 268

Query: 243 ATLSM 247
           ATLSM
Sbjct: 269 ATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9XFW3|MDHG2_BRANA Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1

 Score =  434 bits (1116), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/245 (87%), Positives = 226/245 (92%)

Query: 3   ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PGVTA
Sbjct: 29  KNSVMGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTA 88

Query: 63  DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
           D+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIV+TLCE
Sbjct: 89  DVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVKTLCE 148

Query: 123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 182
           G+AKCCPNA VNLISNPVNSTV IAAEVFKKAGTYDPKKLLGVT LDV RANTFVAEVLG
Sbjct: 149 GVAKCCPNAIVNLISNPVNSTVAIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLG 208

Query: 183 LDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           LDPR+VDVPVVGGHAGVTILPLLSQVKPP SFT  E EYLTNRIQNGGTEVVEAKAGAGS
Sbjct: 209 LDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGS 268

Query: 243 ATLSM 247
           ATLSM
Sbjct: 269 ATLSM 273

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|Q9SN86|MDHP_ARATH Malate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At3g47520 PE=1 SV=1

 Score =  325 bits (832), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 157/229 (68%), Positives = 188/229 (82%)

Query: 19  AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 78
           A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct: 81  ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
             +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct: 141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 198
           PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++   L   DVDVPV+GGHAG
Sbjct: 201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSM
Sbjct: 261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

>sp|P17783|MDHM_CITLA Malate dehydrogenase, mitochondrial OS=Citrullus lanatus GN=MMDH PE=1 SV=1

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 157/226 (69%), Positives = 182/226 (80%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGAAGGIGQPLA+LMK+NPLVS L LYD+  TPGV AD+ H++T + V G++G+ Q
Sbjct: 36  KVAVLGAAGGIGQPLALLMKLNPLVSKLALYDIAGTPGVAADVGHVNTRSEVTGYVGEEQ 95

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L  AL G D+VIIPAGVPRKPGMTRDDLFNINAGIV++LC  IAK CPNA +N+ISNPVN
Sbjct: 96  LGKALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKSLCTAIAKYCPNALINMISNPVN 155

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           STVPIAAEVFKKAGTYD KKL GVT LDVVRA TF A    +   +V+VPV+GGHAG+TI
Sbjct: 156 STVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVAEVNVPVIGGHAGITI 215

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSM
Sbjct: 216 LPLFSQATPRANLSDDTIVALTKRTQDGGTEVVEAKAGKGSATLSM 261

Citrullus lanatus (taxid: 3654)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
359475502	356	PREDICTED: malate dehydrogenase, glyoxys	0.957	0.693	0.943	1e-132
255562058	356	malate dehydrogenase, putative [Ricinus	0.957	0.693	0.923	1e-129
60593475	362	Chain A, Mature And Translocatable Forms	0.957	0.682	0.919	1e-128
126894	356	RecName: Full=Malate dehydrogenase, glyo	0.957	0.693	0.919	1e-128
118489009	354	unknown [Populus trichocarpa x Populus d	0.957	0.697	0.914	1e-127
1170897	356	RecName: Full=Malate dehydrogenase, glyo	0.957	0.693	0.919	1e-127
224103817	354	predicted protein [Populus trichocarpa]	0.957	0.697	0.910	1e-127
449451347	356	PREDICTED: malate dehydrogenase, glyoxys	0.957	0.693	0.919	1e-127
158712040	354	malate dehydrogenase [Perilla frutescens	0.953	0.694	0.918	1e-126
3183079	356	RecName: Full=Malate dehydrogenase, glyo	0.957	0.693	0.906	1e-126

>gi|359475502|ref|XP_003631692.1| PREDICTED: malate dehydrogenase, glyoxysomal [Vitis vinifera] gi|147774268|emb|CAN65552.1| hypothetical protein VITISV_033330 [Vitis vinifera] gi|297736349|emb|CBI25072.3| unnamed protein product [Vitis vinifera]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/247 (94%), Positives = 241/247 (97%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGH+GVTILPLLSQVKPPCSFT EET+YLTNRIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTPEETQYLTNRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562058|ref|XP_002522037.1| malate dehydrogenase, putative [Ricinus communis] gi|223538636|gb|EEF40237.1| malate dehydrogenase, putative [Ricinus communis]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 228/247 (92%), Positives = 238/247 (96%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           ME +S L++A CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEGSSALKRADCRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLENALTGMDLV+IPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMDTGAVVRGFLGQPQLENALTGMDLVVIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQVKPPCSFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 205 LGLDPREVDVPVVGGHAGVTILPLLSQVKPPCSFTSEETEYLTKRIQDGGTEVVQAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|60593475|pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures gi|60593476|pdb|1SEV|B Chain B, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Citrullus lanatus

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126894|sp|P19446.1|MDHG_CITLA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|167284|gb|AAA33041.1| glyoxysomal malate dehydrogenase precursor (EC 1.1.1.37) [Citrullus lanatus subsp. vulgaris]

 Score =  462 bits (1189), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDVDVPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Citrullus lanatus subsp. vulgaris

Species: Citrullus lanatus

Genus: Citrullus

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489009|gb|ABK96312.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 23  MEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 82

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTL
Sbjct: 83  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTL 142

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 202

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 203 LGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGA 262

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 263 GSATLSM 269

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1170897|sp|P46488.1|MDHG_CUCSA RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|695311|gb|AAC41647.1| glyoxysomal malate dehydrogenase [Cucumis sativus]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103817|ref|XP_002313205.1| predicted protein [Populus trichocarpa] gi|118487242|gb|ABK95449.1| unknown [Populus trichocarpa] gi|222849613|gb|EEE87160.1| predicted protein [Populus trichocarpa]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  L++  CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 23  MEESCVLKRTDCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 82

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLF INAGIVRTL
Sbjct: 83  TADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFKINAGIVRTL 142

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 202

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPR+VDVPVVGGHAGVTILPLLSQ KPP SFT EETEYLT RIQ+GGTEVV+AKAGA
Sbjct: 203 LGLDPREVDVPVVGGHAGVTILPLLSQAKPPSSFTPEETEYLTKRIQDGGTEVVQAKAGA 262

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 263 GSATLSM 269

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451347|ref|XP_004143423.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus] gi|449499834|ref|XP_004160930.1| PREDICTED: malate dehydrogenase, glyoxysomal-like [Cucumis sativus]

 Score =  459 bits (1180), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 227/247 (91%), Positives = 235/247 (95%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDLV+IPAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPVVGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|158712040|gb|ABW79813.1| malate dehydrogenase [Perilla frutescens]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 226/246 (91%), Positives = 234/246 (95%)

Query: 2   EENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT 61
           E +  LR A CRAKGGA GFKVAILGAAGGIGQPL+MLMK+NPLVSVLHLYDVVN PGVT
Sbjct: 24  EHHPILRAADCRAKGGAPGFKVAILGAAGGIGQPLSMLMKMNPLVSVLHLYDVVNAPGVT 83

Query: 62  ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 121
           AD+SHMDTGAVVRGFLGQPQLE+ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC
Sbjct: 84  ADVSHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 143

Query: 122 EGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 181
           EGIAK CPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL
Sbjct: 144 EGIAKSCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 203

Query: 182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
           GLDPR+V VPVVGGHAGVTILPLLSQVKPPCSFT EETEYLT RIQ+GGTEVV+AKAGAG
Sbjct: 204 GLDPREVSVPVVGGHAGVTILPLLSQVKPPCSFTPEETEYLTKRIQDGGTEVVQAKAGAG 263

Query: 242 SATLSM 247
           SATLSM
Sbjct: 264 SATLSM 269

Source: Perilla frutescens

Species: Perilla frutescens

Genus: Perilla

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3183079|sp|Q42972.3|MDHG_ORYSJ RecName: Full=Malate dehydrogenase, glyoxysomal; Flags: Precursor gi|1375075|dbj|BAA12870.1| glyoxysomal malate dehydrogenase [Oryza sativa Japonica Group] gi|108863013|gb|ABA99938.2| Malate dehydrogenase, glyoxysomal precursor, putative, expressed [Oryza sativa Japonica Group] gi|215686901|dbj|BAG89751.1| unnamed protein product [Oryza sativa Japonica Group] gi|215692695|dbj|BAG88115.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187302|gb|EEC69729.1| hypothetical protein OsI_39238 [Oryza sativa Indica Group] gi|222617526|gb|EEE53658.1| hypothetical protein OsJ_36976 [Oryza sativa Japonica Group]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 234/247 (94%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+  LR + CRAKG A GFKVAILGA+GGIGQPLA+LMK+NPLVSVLHLYDVVNTPGV
Sbjct: 25  MEESPLLRGSNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGV 84

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHM+TGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL
Sbjct: 85  TADISHMNTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 144

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CEGIAKCCPNA VN+ISNPVNSTVPIAAEVFKKAGTYDPK+LLGVT LDVVRANTFVAEV
Sbjct: 145 CEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEV 204

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           LGLDPRDV+VPV+GGHAGVTILPLLSQV PPCSFT EE  YLT RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGA 264

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	258
TAIR|locus:2062240	354	PMDH1 "peroxisomal NAD-malate	0.949	0.692	0.836	5.3e-104
TAIR|locus:2144781	363	PMDH2 "peroxisomal NAD-malate	0.957	0.680	0.810	1.1e-101
TAIR|locus:2079177	403	MDH "malate dehydrogenase" [Ar	0.887	0.568	0.646	1.5e-74
TAIR|locus:2009605	341	mMDH1 "mitochondrial malate de	0.957	0.724	0.62	4e-74
TAIR|locus:2086340	341	mMDH2 "mitochondrial malate de	0.875	0.662	0.659	7.5e-73
WB|WBGene00003162	341	mdh-2 [Caenorhabditis elegans	0.945	0.715	0.601	7e-70
UNIPROTKB|E1BVT3	337	MDH2 "Malate dehydrogenase" [G	0.914	0.700	0.600	1.1e-69
UNIPROTKB|F1PYG8	338	MDH2 "Malate dehydrogenase" [C	0.875	0.668	0.610	1e-68
UNIPROTKB|I3LP41	338	MDH2 "Malate dehydrogenase" [S	0.875	0.668	0.610	1.3e-68
UNIPROTKB|P00346	338	MDH2 "Malate dehydrogenase, mi	0.875	0.668	0.610	1.3e-68

TAIR|locus:2062240 PMDH1 "peroxisomal NAD-malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 205/245 (83%), Positives = 214/245 (87%)

Query:     3 ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
             + S L +  CRAKGG+ GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDV N PGVTA
Sbjct:    25 DGSGLNRVACRAKGGSPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTA 84

Query:    63 DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE 122
             DISHMDT AVVRGFLGQPQLE ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL E
Sbjct:    85 DISHMDTSAVVRGFLGQPQLEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSE 144

Query:   123 GIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXX 182
              IAKCCP A VN+ISNPVNSTVPIAAEVFKKAGT+DPKKL+GVTMLDVVRANTFVAE   
Sbjct:   145 AIAKCCPKAIVNIISNPVNSTVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMS 204

Query:   183 XXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGS 242
                          HAGVTILPLLSQVKPPCSFTQ+E EYLT+RIQNGGTEVVEAKAGAGS
Sbjct:   205 LDPREVEVPVVGGHAGVTILPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGS 264

Query:   243 ATLSM 247
             ATLSM
Sbjct:   265 ATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0009062 "fatty acid catabolic process" evidence=RCA

TAIR|locus:2144781 PMDH2 "peroxisomal NAD-malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1008 (359.9 bits), Expect = 1.1e-101, P = 1.1e-101
 Identities = 201/248 (81%), Positives = 214/248 (86%)

Query:     1 ME-ENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG 59
             ME +NS + +  CRAKGG  GFKVAILGAAGGIGQ L++LMK+NPLVS+LHLYDVVN PG
Sbjct:    22 MEAKNSVIGRENCRAKGGNPGFKVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPG 81

Query:    60 VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
             VTAD+SHMDTGAVVRGFLG  QLE+ALTGMDLVIIPAG+PRKPGMTRDDLF INAGIV+T
Sbjct:    82 VTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKT 141

Query:   120 LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
             LCEG+AKCCPNA VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT LDV RANTFVAE
Sbjct:   142 LCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAE 201

Query:   180 XXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
                             HAGVTILPLLSQVKPP SFT +E EYLTNRIQNGGTEVVEAKAG
Sbjct:   202 VLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAG 261

Query:   240 AGSATLSM 247
             AGSATLSM
Sbjct:   262 AGSATLSM 269

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005777 "peroxisome" evidence=IDA

GO:0031998 "regulation of fatty acid beta-oxidation" evidence=IGI;IMP

GO:0048046 "apoplast" evidence=IDA

GO:0080093 "regulation of photorespiration" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

GO:0044242 "cellular lipid catabolic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0042579 "microbody" evidence=ISS

TAIR|locus:2079177 MDH "malate dehydrogenase" [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 148/229 (64%), Positives = 178/229 (77%)

Query:    19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG 78
             A +KVA+LGAAGGIGQPL++L+K++PLVS LHLYD+ N  GV AD+SH +T + VR F G
Sbjct:    81 ASYKVAVLGAAGGIGQPLSLLIKMSPLVSTLHLYDIANVKGVAADLSHCNTPSQVRDFTG 140

Query:    79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
               +L + L  +++V+IPAGVPRKPGMTRDDLFNINA IV+TL E +A+ CPNA +++ISN
Sbjct:   141 PSELADCLKDVNVVVIPAGVPRKPGMTRDDLFNINANIVKTLVEAVAENCPNAFIHIISN 200

Query:   139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
             PVNSTVPIAAEV KK G YDPKKL GVT LDVVRANTFV++                HAG
Sbjct:   201 PVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVSQKKNLKLIDVDVPVIGGHAG 260

Query:   199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             +TILPLLS+ KP  +FT EE + LT RIQN GTEVV+AKAGAGSATLSM
Sbjct:   261 ITILPLLSKTKPSVNFTDEEIQELTVRIQNAGTEVVDAKAGAGSATLSM 309

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IDA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010319 "stromule" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2009605 mMDH1 "mitochondrial malate dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 155/250 (62%), Positives = 178/250 (71%)

Query:     1 MEENSCLRQAKCR---AKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT 57
             +  ++  +QA  R   + G     KVAILGAAGGIGQPLA+LMK+NPLVS L LYD+ NT
Sbjct:     7 VRSSASAKQAVIRRSFSSGSVPERKVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIANT 66

Query:    58 PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIV 117
             PGV AD+ H++T + V G++G   L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV
Sbjct:    67 PGVAADVGHINTRSEVVGYMGDDNLAKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIV 126

Query:   118 RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 177
             + LC  IAK CP+A +N+ISNPVNSTVPIAAE+FKKAG YD KKL GVT LDVVRA TF 
Sbjct:   127 KNLCTAIAKYCPHALINMISNPVNSTVPIAAEIFKKAGMYDEKKLFGVTTLDVVRARTFY 186

Query:   178 AEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
             A                 HAGVTILPL SQ  P  + + +    LT R Q+GGTEVVEAK
Sbjct:   187 AGKANVPVAEVNVPVIGGHAGVTILPLFSQATPQANLSSDILTALTKRTQDGGTEVVEAK 246

Query:   238 AGAGSATLSM 247
             AG GSATLSM
Sbjct:   247 AGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IMP

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009409 "response to cold" evidence=IEP

GO:0005618 "cell wall" evidence=IDA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009507 "chloroplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0048046 "apoplast" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

TAIR|locus:2086340 mMDH2 "mitochondrial malate dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 149/226 (65%), Positives = 167/226 (73%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KV ILGAAGGIGQPL++LMK+NPLVS L LYD+ NTPGV AD+ H++T + V G++G   
Sbjct:    31 KVVILGAAGGIGQPLSLLMKLNPLVSSLSLYDIANTPGVAADVGHINTRSQVSGYMGDDD 90

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L  AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+ L   IAK CP A VN+ISNPVN
Sbjct:    91 LGKALEGADLVIIPAGVPRKPGMTRDDLFNINAGIVKNLSIAIAKYCPQALVNMISNPVN 150

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             STVPIAAE+FKKAGTYD KKL GVT LDVVRA TF A                 HAG+TI
Sbjct:   151 STVPIAAEIFKKAGTYDEKKLFGVTTLDVVRARTFYAGKSDVNVAEVNVPVVGGHAGITI 210

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             LPL SQ  P  + + +    LT R Q+GGTEVVEAKAG GSATLSM
Sbjct:   211 LPLFSQASPQANLSDDLIRALTKRTQDGGTEVVEAKAGKGSATLSM 256

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA;ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;IGI

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0016020 "membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0005507 "copper ion binding" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

WB|WBGene00003162 mdh-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 708 (254.3 bits), Expect = 7.0e-70, P = 7.0e-70
 Identities = 148/246 (60%), Positives = 174/246 (70%)

Query:     4 NSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD 63
             NS LR    R    A   KVA+LGAAGGIGQPL +L+K +PLV+ L LYDVVNTPGV AD
Sbjct:    14 NSGLRAVSVRHSSQAP--KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAAD 71

Query:    64 ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG 123
             +SH+D+ A V    G  +L  A+   D+++IPAGVPRKPGMTRDDLFN NAGIVR L   
Sbjct:    72 LSHIDSNAKVTAHTGPKELYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAV 131

Query:   124 IAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXX 183
             IAK  P A + +I+NPVNSTVPIA+EV KKAG YDPK++ GVT LDVVR+  FV+E    
Sbjct:   132 IAKASPKALIAIITNPVNSTVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGH 191

Query:   184 XXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
                         HAG+TI+PLLSQVKP   F++EE   LT RIQ+ GTEVV AKAGAGSA
Sbjct:   192 DASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSA 251

Query:   244 TLSMRL 249
             TLSM L
Sbjct:   252 TLSMAL 257

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA;ISS

GO:0006108 "malate metabolic process" evidence=IEA;ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0016615 "malate dehydrogenase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0005739 "mitochondrion" evidence=ISS;IDA

UNIPROTKB|E1BVT3 MDH2 "Malate dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 143/238 (60%), Positives = 171/238 (71%)

Query:    12 CRAKGGAA--GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT 69
             CR    +A    KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T
Sbjct:    13 CRGLATSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIET 72

Query:    70 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              A V+GFLG  QL   L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    AK CP
Sbjct:    73 RANVKGFLGPEQLPECLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTTACAKHCP 132

Query:   130 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXX 189
              A + +ISNPVNST+PI +EVFKK G Y+P ++ GVT LD+VRANTFVAE          
Sbjct:   133 EAMICIISNPVNSTIPITSEVFKKHGVYNPNRIFGVTTLDIVRANTFVAELKGLDPARVS 192

Query:   190 XXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
                   HAG TI+PL+SQ  P   F Q++ E LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   193 VPVIGGHAGKTIIPLISQCTPKVDFPQDQLEKLTGRIQEAGTEVVKAKAGAGSATLSM 250

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006475 "internal protein amino acid acetylation" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1PYG8 MDH2 "Malate dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 697 (250.4 bits), Expect = 1.0e-68, P = 1.0e-68
 Identities = 138/226 (61%), Positives = 166/226 (73%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KVA+LGA+GGIGQPLA+L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLALLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNASIVATLTAACAQHCPEAMICVISNPVN 145

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             ST+PIA EVFKK G YDP K+ GVT LD+VRANTF+AE                HAG TI
Sbjct:   146 STIPIATEVFKKHGAYDPNKIFGVTTLDIVRANTFIAELKGLDPARVNVPVIGGHAGKTI 205

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             +PL+SQ  P     Q++   +T RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDLPQDQLTAVTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LP41 MDH2 "Malate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/226 (61%), Positives = 167/226 (73%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P00346 MDH2 "Malate dehydrogenase, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 138/226 (61%), Positives = 167/226 (73%)

Query:    22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
             KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct:    26 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 85

Query:    82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct:    86 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 145

Query:   142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
             ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct:   146 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 205

Query:   202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct:   206 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 251

GO:0006475 "internal protein amino acid acetylation" evidence=ISS

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0030060 "L-malate dehydrogenase activity" evidence=IEA

GO:0006099 "tricarboxylic acid cycle" evidence=IEA

GO:0044262 "cellular carbohydrate metabolic process" evidence=IEA

GO:0006108 "malate metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4WF48	MDH_ENT38	1, ., 1, ., 1, ., 3, 7	0.6200	0.8720	0.7211	yes	no
Q43743	MDHG1_BRANA	1, ., 1, ., 1, ., 3, 7	0.8775	0.9496	0.6843	N/A	no
Q5NVR2	MDHM_PONAB	1, ., 1, ., 1, ., 3, 7	0.6548	0.8759	0.6686	yes	no
Q1CEJ3	MDH_YERPN	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
A9R584	MDH_YERPG	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
Q42972	MDHG_ORYSJ	1, ., 1, ., 1, ., 3, 7	0.9068	0.9573	0.6938	yes	no
Q1CBY7	MDH_YERPA	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
P08249	MDHM_MOUSE	1, ., 1, ., 1, ., 3, 7	0.6592	0.8759	0.6686	yes	no
P46487	MDHM_EUCGU	1, ., 1, ., 1, ., 3, 7	0.7035	0.8759	0.6512	N/A	no
Q31WA4	MDH_SHIBS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
A7FMU2	MDH_YERP3	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
A8A545	MDH_ECOHS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
Q1R6A3	MDH_ECOUT	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
P46488	MDHG_CUCSA	1, ., 1, ., 1, ., 3, 7	0.9190	0.9573	0.6938	N/A	no
P61892	MDH_YERPE	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
A4TRK3	MDH_YERPP	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
Q32LG3	MDHM_BOVIN	1, ., 1, ., 1, ., 3, 7	0.6504	0.8759	0.6686	yes	no
A1AGC9	MDH_ECOK1	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
Q9XFW3	MDHG2_BRANA	1, ., 1, ., 1, ., 3, 7	0.8734	0.9496	0.6843	N/A	no
B1LGK2	MDH_ECOSM	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
B2U1U9	MDH_SHIB3	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
P37228	MDHG_SOYBN	1, ., 1, ., 1, ., 3, 7	0.8780	0.9534	0.6968	yes	no
P0C7R5	MDH_YERPS	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
O02640	MDHM_CAEEL	1, ., 1, ., 1, ., 3, 7	0.6341	0.9457	0.7155	yes	no
B7LHU4	MDH_ECO55	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
P40926	MDHM_HUMAN	1, ., 1, ., 1, ., 3, 7	0.6548	0.8759	0.6686	yes	no
B4T769	MDH_SALNS	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
B1JMK1	MDH_YERPY	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
P04636	MDHM_RAT	1, ., 1, ., 1, ., 3, 7	0.6592	0.8759	0.6686	yes	no
C6DKH1	MDH_PECCP	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
P19446	MDHG_CITLA	1, ., 1, ., 1, ., 3, 7	0.9190	0.9573	0.6938	N/A	no
P00346	MDHM_PIG	1, ., 1, ., 1, ., 3, 7	0.6548	0.8759	0.6686	yes	no
B7NKU9	MDH_ECO7I	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
Q3YX11	MDH_SHISS	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
O82399	MDHG2_ARATH	1, ., 1, ., 1, ., 3, 7	0.8857	0.9496	0.6920	yes	no
P61890	MDH_ECOL6	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
B2K2N5	MDH_YERPB	1, ., 1, ., 1, ., 3, 7	0.6288	0.8720	0.7211	yes	no
A1JIV0	MDH_YERE8	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7234	yes	no
B1IQP3	MDH_ECOLC	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no
B7M0U8	MDH_ECO8A	1, ., 1, ., 1, ., 3, 7	0.6244	0.8720	0.7211	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.976
3rd Layer	1.1.1.37	0.991

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Mdhg	RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (356 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003727001	RecName- Full=Citrate synthase; (472 aa)				•	•	•	•		0.956
	GSVIVG00017898001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa)						•	•		0.941
	GSVIVG00028048001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (470 aa)						•	•		0.929
	VVME2	RecName- Full=Malic enzyme; (591 aa)						•	•		0.905
	NADP-ME	RecName- Full=Malic enzyme; (496 aa)						•	•		0.905
	GSVIVG00016723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa)						•	•		0.903
	GSVIVG00032723001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa)						•	•		0.903
	GSVIVG00032463001	RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (450 aa)						•	•		0.902
	GSVIVG00026767001	RecName- Full=Malic enzyme; (605 aa)						•	•		0.902
	GSVIVG00018984001	RecName- Full=Malic enzyme; (625 aa)						•	•		0.902

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	258
PLN00106	323	PLN00106, PLN00106, malate dehydrogenase	0.0
cd01337	310	cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysoma	1e-161
TIGR01772	312	TIGR01772, MDH_euk_gproteo, malate dehydrogenase,	1e-124
PRK05086	312	PRK05086, PRK05086, malate dehydrogenase; Provisio	1e-117
PTZ00325	321	PTZ00325, PTZ00325, malate dehydrogenase; Provisio	1e-107
COG0039	313	COG0039, Mdh, Malate/lactate dehydrogenases [Energ	2e-65
pfam00056	142	pfam00056, Ldh_1_N, lactate/malate dehydrogenase,	3e-54
PRK06223	307	PRK06223, PRK06223, malate dehydrogenase; Reviewed	3e-40
cd01339	300	cd01339, LDH-like_MDH, L-lactate dehydrogenase-lik	8e-40
cd00650	263	cd00650, LDH_MDH_like, NAD-dependent, lactate dehy	1e-36
PTZ00117	319	PTZ00117, PTZ00117, malate dehydrogenase; Provisio	2e-30
pfam02866	173	pfam02866, Ldh_1_C, lactate/malate dehydrogenase,	1e-29
cd00300	300	cd00300, LDH_like, L-lactate dehydrogenase-like en	1e-28
PTZ00082	321	PTZ00082, PTZ00082, L-lactate dehydrogenase; Provi	1e-27
cd05294	309	cd05294, LDH-like_MDH_nadp, A lactate dehydrogenas	6e-24
TIGR01763	305	TIGR01763, MalateDH_bact, malate dehydrogenase, NA	3e-21
cd05291	306	cd05291, HicDH_like, L-2-hydroxyisocapronate dehyd	4e-18
TIGR01771	299	TIGR01771, L-LDH-NAD, L-lactate dehydrogenase	9e-18
cd00704	323	cd00704, MDH, Malate dehydrogenase	2e-17
cd05292	308	cd05292, LDH_2, A subgroup of L-lactate dehydrogen	1e-15
TIGR01759	323	TIGR01759, MalateDH-SF1, malate dehydrogenase	6e-15
cd05290	307	cd05290, LDH_3, A subgroup of L-lactate dehydrogen	8e-15
TIGR01758	324	TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-	2e-12
PRK00066	315	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	4e-12
cd01336	325	cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic an	3e-11
cd05293	312	cd05293, LDH_1, A subgroup of L-lactate dehydrogen	8e-11
TIGR01756	313	TIGR01756, LDH_protist, lactate dehydrogenase	1e-10
PLN02602	350	PLN02602, PLN02602, lactate dehydrogenase	1e-09
PLN00135	309	PLN00135, PLN00135, malate dehydrogenase	5e-08
cd01338	322	cd01338, MDH_choloroplast_like, Chloroplast-like m	2e-07
PRK05442	326	PRK05442, PRK05442, malate dehydrogenase; Provisio	4e-05
PLN00112	444	PLN00112, PLN00112, malate dehydrogenase (NADP); P	0.001

>gnl|CDD|215058 PLN00106, PLN00106, malate dehydrogenase

 Score =  508 bits (1311), Expect = 0.0
 Identities = 198/247 (80%), Positives = 211/247 (85%), Gaps = 2/247 (0%)

Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
             E S LR   CRAKGGA GFKVA+LGAAGGIGQPL++LMK+NPLVS LHLYD+ NTPGV
Sbjct: 1   SMEASSLRA--CRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGV 58

Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
            AD+SH++T A VRGFLG  QL +AL G DLVIIPAGVPRKPGMTRDDLFNINAGIV+TL
Sbjct: 59  AADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVPRKPGMTRDDLFNINAGIVKTL 118

Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 180
           CE +AK CPNA VN+ISNPVNSTVPIAAEV KKAG YDPKKL GVT LDVVRANTFVAE 
Sbjct: 119 CEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEK 178

Query: 181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
            GLDP DVDVPVVGGHAG+TILPLLSQ  P  SFT EE E LT RIQNGGTEVVEAKAGA
Sbjct: 179 KGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGA 238

Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 239 GSATLSM 245

Length = 323

>gnl|CDD|133422 cd01337, MDH_glyoxysomal_mitochondrial, Glyoxysomal and mitochondrial malate dehydrogenases

 Score =  449 bits (1157), Expect = e-161
 Identities = 168/227 (74%), Positives = 194/227 (85%)

Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
            KVA+LGAAGGIGQPL++L+K+NPLVS L LYD+VNTPGV AD+SH++T A V G+LG  
Sbjct: 1   VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPE 60

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
           +L+ AL G D+V+IPAGVPRKPGMTRDDLFNINAGIVR L   +AK CP A + +ISNPV
Sbjct: 61  ELKKALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 200
           NSTVPIAAEV KKAG YDPK+L GVT LDVVRANTFVAE+LGLDP  V+VPV+GGH+GVT
Sbjct: 121 NSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVNVPVIGGHSGVT 180

Query: 201 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           ILPLLSQ +PP +F QEE E LT+RIQ GG EVV+AKAGAGSATLSM
Sbjct: 181 ILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSM 227

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 310

>gnl|CDD|130833 TIGR01772, MDH_euk_gproteo, malate dehydrogenase, NAD-dependent

 Score =  354 bits (911), Expect = e-124
 Identities = 149/226 (65%), Positives = 181/226 (80%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGAAGGIGQPL++L+K+ P VS L LYD+    GV AD+SH+ T A V+GF G+  
Sbjct: 1   KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEG 60

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           LENAL G D+V+IPAGVPRKPGMTRDDLFN+NAGIV+ L   +A+ CP A + +I+NPVN
Sbjct: 61  LENALKGADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVN 120

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           STVPIAAEV KK G YDP KL GVT LD+VRANTFVAE+ G DP +V+VPV+GGH+G TI
Sbjct: 121 STVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELKGKDPMEVNVPVIGGHSGETI 180

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           +PL+SQ      FT+++ E L +RIQN GTEVV+AKAGAGSATLSM
Sbjct: 181 IPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSM 226

This model represents the NAD-dependent malate dehydrogenase found in eukaryotes and certain gamma proteobacteria. The enzyme is involved in the citric acid cycle as well as the glyoxalate cycle. Several isoforms exidt in eukaryotes. In S. cereviseae, for example, there are cytoplasmic, mitochondrial and peroxisomal forms. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases [Energy metabolism, TCA cycle]. Length = 312

>gnl|CDD|235340 PRK05086, PRK05086, malate dehydrogenase; Provisional

 Score =  338 bits (868), Expect = e-117
 Identities = 144/228 (63%), Positives = 171/228 (75%), Gaps = 4/228 (1%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L E +AK CP A + +I+NP
Sbjct: 62  -DPTPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           VN+TV IAAEV KKAG YD  KL GVT LDV+R+ TFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

Length = 312

>gnl|CDD|240360 PTZ00325, PTZ00325, malate dehydrogenase; Provisional

 Score =  312 bits (801), Expect = e-107
 Identities = 150/227 (66%), Positives = 174/227 (76%), Gaps = 2/227 (0%)

Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
           FKVA+LGAAGGIGQPL++L+K NP VS L LYD+V  PGV AD+SH+DT A V G+    
Sbjct: 9   FKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGE 68

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
             E AL G DLV+I AGVPRKPGMTRDDLFN NA IVR L   +A   P A V ++SNPV
Sbjct: 69  LWEKALRGADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVT 200
           NSTVPIAAE  KKAG YDP+KL GVT LDVVRA  FVAE LG++P DV+VPVVGGH+GVT
Sbjct: 129 NSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVNVPVVGGHSGVT 188

Query: 201 ILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           I+PLLSQ     S  +E+ E +T+R+Q GG EVV+AK GAGSATLSM
Sbjct: 189 IVPLLSQT--GLSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSM 233

Length = 321

>gnl|CDD|223117 COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]

 Score =  205 bits (525), Expect = 2e-65
 Identities = 92/236 (38%), Positives = 127/236 (53%), Gaps = 17/236 (7%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA G +G  LA L+ +  L S L L D+      GV  D+SH          +  
Sbjct: 2   KVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                 L G D+V+I AGVPRKPGMTR DL   NA IV+ + + IAK  P+A V +++NP
Sbjct: 61  DGDYEDLKGADIVVITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           V+    IA +    +G    + +   T+LD  R  TF+AE LG+ P+DV   V+G H G 
Sbjct: 121 VDILTYIAMKF---SGFPKNRVIGSGTVLDSARFRTFLAEKLGVSPKDVHAYVIGEH-GD 176

Query: 200 TILPLLSQV----KPPCSF----TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           T++PL SQ     KP        T+E+ E L  R++N G E++EAK GAG      
Sbjct: 177 TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230

Length = 313

>gnl|CDD|200963 pfam00056, Ldh_1_N, lactate/malate dehydrogenase, NAD binding domain

 Score =  171 bits (435), Expect = 3e-54
 Identities = 60/145 (41%), Positives = 80/145 (55%), Gaps = 6/145 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA GG+G  LA  + +  L   L L D+      GV  D+SH  T   V G +G 
Sbjct: 2   KVAVVGAGGGVGSSLAFALALQGLADELVLVDINKDKAEGVAMDLSHGSTFLSVPGIVGG 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL   D+V+I AGVPRKPGMTR DL N NAGI + +   IAK  P+A V ++SNP
Sbjct: 62  DD-YEALKDADVVVITAGVPRKPGMTRLDLLNRNAGIFKDIVPAIAKSAPDAIVLVVSNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    IA +V   +G    + +  
Sbjct: 121 VDILTYIAWKV---SGLPPERVIGS 142

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold. Length = 142

>gnl|CDD|180477 PRK06223, PRK06223, malate dehydrogenase; Reviewed

 Score =  140 bits (356), Expect = 3e-40
 Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 22/233 (9%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G +G  LA L+ +  L  V+ L+D+V   P G   DI+     A V GF  +
Sbjct: 4   KISIIGA-GNVGATLAHLLALKELGDVV-LFDIVEGVPQGKALDIAEA---APVEGFDTK 58

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N    + G D+V+I AGVPRKPGM+RDDL  INA I++ + EGI K  P+A V ++
Sbjct: 59  ITGTNDYEDIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV 118

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NPV++   +A     K   +   +++G+  +LD  R  TF+AE L +  +DV   V+GG
Sbjct: 119 TNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFRTFIAEELNVSVKDVTAFVLGG 174

Query: 196 HAGVTILPLLSQ-----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G +++PL+       +      ++E+ + +  R + GG E+V      GSA
Sbjct: 175 H-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSA 225

Length = 307

>gnl|CDD|133424 cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins

 Score =  139 bits (352), Expect = 8e-40
 Identities = 83/233 (35%), Positives = 122/233 (52%), Gaps = 24/233 (10%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHM----DTGAVVRGF 76
           ++I+GA G +G  LA L+ +  L  V+ L D+V   P G   DIS       +   V G 
Sbjct: 1   ISIIGA-GNVGATLAQLLALKELGDVV-LLDIVEGLPQGKALDISQAAPILGSDTKVTGT 58

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
                +  +    D+V+I AG+PRKPGM+RDDL   NA IV+ + E I K  PNA V ++
Sbjct: 59  NDYEDIAGS----DVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV 114

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++        V  KA  +   +++G+  +LD  R   F+AE LG+  +DV   V+GG
Sbjct: 115 TNPLDVMT----YVAYKASGFPRNRVIGMAGVLDSARFRYFIAEELGVSVKDVQAMVLGG 170

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G T++PL         P     T+EE + +  R +NGG E+V      GSA
Sbjct: 171 H-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSA 221

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

 Score =  130 bits (328), Expect = 1e-36
 Identities = 63/192 (32%), Positives = 93/192 (48%), Gaps = 9/192 (4%)

Query: 23  VAILGAAGGIGQPLA--MLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 78
           +A++GA G +G  LA  +      L   L LYD+      GV  D+              
Sbjct: 1   IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSI 60

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                 A    D+VII AGV RKPGM R DL   N  IV+ + + I K  P+A + ++SN
Sbjct: 61  TDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN 120

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 198
           PV+    I   +  +      +K++G+  LD +R    +AE LG+DP DV V ++G H G
Sbjct: 121 PVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRILAEKLGVDPDDVKVYILGEHGG 176

Query: 199 VTILPLLSQVKP 210
            + +P  S V+ 
Sbjct: 177 -SQVPDWSTVRI 187

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 263

>gnl|CDD|173409 PTZ00117, PTZ00117, malate dehydrogenase; Provisional

 Score =  115 bits (289), Expect = 2e-30
 Identities = 78/239 (32%), Positives = 120/239 (50%), Gaps = 23/239 (9%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISH-MDTGAVVRGFLG 78
           K++++GA G IG  +A+L+    L  V+ LYDV+   P G   D+ H           LG
Sbjct: 7   KISMIGA-GQIGSTVALLILQKNLGDVV-LYDVIKGVPQGKALDLKHFSTLVGSNINILG 64

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
               E  +   D+V+I AGV RK  MTR+DL  IN  I++++ E + K CPNA V  ++N
Sbjct: 65  TNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGHA 197
           P++       +VF++       K+ G+  +LD  R    +AE LG+ P DV   V+GGH 
Sbjct: 124 PLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFRCNLAEKLGVSPGDVSAVVIGGH- 178

Query: 198 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246
           G  ++PL         P   F      T++E   +  + +N G E+V+     GSA  +
Sbjct: 179 GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKL-LKKGSAFFA 236

Length = 319

>gnl|CDD|202437 pfam02866, Ldh_1_C, lactate/malate dehydrogenase, alpha/beta C-terminal domain

 Score =  108 bits (273), Expect = 1e-29
 Identities = 47/92 (51%), Positives = 56/92 (60%), Gaps = 12/92 (13%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG----------VTILPLLSQVKPPCSFT 215
           T LD  RA TF+AE  G+DPR V+V V+G H+G          VTI+PL+SQVK     T
Sbjct: 1   TTLDTARARTFLAEKFGVDPRSVNVYVIGEHSGTQFPDWSHAKVTIIPLISQVKENLKDT 60

Query: 216 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
             E E L  R+QN G EV+EAK  AGS T SM
Sbjct: 61  DWELEELIERVQNAGYEVIEAK--AGSTTYSM 90

L-lactate dehydrogenases are metabolic enzymes which catalyze the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyze the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. Length = 173

>gnl|CDD|133418 cd00300, LDH_like, L-lactate dehydrogenase-like enzymes

 Score =  109 bits (275), Expect = 1e-28
 Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 25/235 (10%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRGF 76
           + I+GA G +G  +A  +    L S L L DV      G   D+SH      TG +VRG 
Sbjct: 1   ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG- 58

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
                        D+V+I AG PRKPG TR DL N NA I+R++   + K  P+A + ++
Sbjct: 59  ----GDYADAADADIVVITAGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVV 114

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           SNPV+    I   V +K       +++G  T+LD  R  + +AE L +DP+ V   V+G 
Sbjct: 115 SNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLAEKLDVDPQSVHAYVLGE 170

Query: 196 HAGVTILPLLSQVK-------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G + +   S              FT+ + E +   ++  G E++  K      
Sbjct: 171 H-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLKGATNYG 224

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 300

>gnl|CDD|173376 PTZ00082, PTZ00082, L-lactate dehydrogenase; Provisional

 Score =  107 bits (269), Expect = 1e-27
 Identities = 86/241 (35%), Positives = 133/241 (55%), Gaps = 28/241 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVR-GFLG 78
           K++++G+ G IG  +A L+ +  L  V+ L+D+V N P G   DISH +  A      +G
Sbjct: 8   KISLIGS-GNIGGVMAYLIVLKNLGDVV-LFDIVKNIPQGKALDISHSNVIAGSNSKVIG 65

Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATV 133
               E+ + G D+VI+ AG+ ++PG +     RDDL  +NA I+  + EGI K CPNA V
Sbjct: 66  TNNYED-IAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFV 124

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPV 192
            +I+NP++  V    ++ ++       K+ G+  +LD  R  T++AE LG++PRDV   V
Sbjct: 125 IVITNPLDVMV----KLLQEHSGLPKNKVCGMAGVLDSSRLRTYIAEKLGVNPRDVHASV 180

Query: 193 VGGHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVEAKAGAGS 242
           +G H G  ++PL   V     P   F      TQEE + +  R +N G E+V+   G GS
Sbjct: 181 IGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDL-LGTGS 238

Query: 243 A 243
           A
Sbjct: 239 A 239

Length = 321

>gnl|CDD|133430 cd05294, LDH-like_MDH_nadp, A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

 Score = 97.5 bits (243), Expect = 6e-24
 Identities = 66/243 (27%), Positives = 115/243 (47%), Gaps = 43/243 (17%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHL-----------------YDVVNTPGVTADI 64
           KV+I+GA+G +G   A+L+    +V  ++L                 YD +   G+ A+I
Sbjct: 2   KVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI 61

Query: 65  SHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI 124
                 + V              G D+VII AGVPRK GM+R DL   NA IV+   + I
Sbjct: 62  KISSDLSDV-------------AGSDIVIITAGVPRKEGMSRLDLAKKNAKIVKKYAKQI 108

Query: 125 AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGL 183
           A+  P+  + +++NPV+     A    K++G +D  ++ G+ T LD +R    +A+   +
Sbjct: 109 AEFAPDTKILVVTNPVDVMTYKA---LKESG-FDKNRVFGLGTHLDSLRFKVAIAKHFNV 164

Query: 184 DPRDVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEA 236
              +V   ++G H G +++PL+S        +K    +   + E +   ++N G  ++  
Sbjct: 165 HISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISL 223

Query: 237 KAG 239
           K G
Sbjct: 224 KGG 226

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)- binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 309

>gnl|CDD|233562 TIGR01763, MalateDH_bact, malate dehydrogenase, NAD-dependent

 Score = 89.9 bits (223), Expect = 3e-21
 Identities = 69/237 (29%), Positives = 115/237 (48%), Gaps = 30/237 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----L 77
           K++++GA G +G   A  +    L  ++ L DVV        +   +   V  GF     
Sbjct: 3   KISVIGA-GFVGATTAFRLAEKELADLV-LLDVVEGIPQGKALDMYEASPV-GGFDTKVT 59

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
           G     +     D+V+I AG+PRKPGM+R+DL ++NAGIVR +   I +  PN  + ++S
Sbjct: 60  GTNNYADT-ANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVS 118

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEVLGLDPRDVDVPVVGGH 196
           NP+++   +A +       +  ++++G   +LD  R  TF+A  LG+  +DV   V+GGH
Sbjct: 119 NPLDAMTYVAWQK----SGFPKERVIGQAGVLDSARFRTFIAMELGVSVQDVTACVLGGH 174

Query: 197 AGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
            G  ++PL          ++ +        E    +  R + GG E+V      GSA
Sbjct: 175 -GDAMVPLVRYSTVAGIPVADLISA-----ERIAEIVERTRKGGGEIVNL-LKQGSA 224

This enzyme converts malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterized , and have been used to set the cutoffs for this model. Sequences showing [aflimv][ap]R[rk]pgM[st] and [ltv][ilm]gGhgd were kept above trusted, while those in which the capitalized residues in the patterns were found to be Q, E and E were kept below the noise cutoff. Some sequences in the grey zone have been annotated as malate dehydrogenases, but none have been characterized. Phylogenetically, a clade of sequences from eukaryotes such as Toxoplasma and Plasmodium which include a characterized lactate dehydrogenase and show abiguous critical residue patterns appears to be more closely related to these bacterial sequences than other eukaryotic sequences. These are relatively long branch and have been excluded from the model. All other sequences falling below trusted appear to be phylogenetically outside of the clade including the trusted hits. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable [Energy metabolism, TCA cycle]. Length = 305

>gnl|CDD|133427 cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

 Score = 81.4 bits (202), Expect = 4e-18
 Identities = 47/160 (29%), Positives = 77/160 (48%), Gaps = 16/160 (10%)

Query: 89  MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA 148
            D+V+I AG P+KPG TR DL   NA I++++   I     +    + SNPV+    +  
Sbjct: 69  ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VIT 124

Query: 149 EVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH--------AGV 199
            V +K       +++G  T LD  R    +AE L +DPR V   V+G H        + V
Sbjct: 125 YVVQKLSGLPKNRVIGTGTSLDTARLRRALAEKLNVDPRSVHAYVLGEHGDSQFVAWSTV 184

Query: 200 TIL--PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           T+   PLL  +K     ++ + + +   ++  G E++  K
Sbjct: 185 TVGGKPLLDLLKEGK-LSELDLDEIEEDVRKAGYEIINGK 223

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 306

>gnl|CDD|233566 TIGR01771, L-LDH-NAD, L-lactate dehydrogenase

 Score = 80.3 bits (199), Expect = 9e-18
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 15/163 (9%)

Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
               DLV+I AG P+KPG TR +L   N  I++++   + K   +    + +NPV+    
Sbjct: 62  CKDADLVVITAGAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD---- 117

Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH-------- 196
           I   V  K   +   +++G  T+LD  R    +AE LG+DP+ V   ++G H        
Sbjct: 118 ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAEKLGVDPQSVHAYIIGEHGDSEVPVW 177

Query: 197 --AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
             A +  +PLL  +K   + T  + E +   +++   E++  K
Sbjct: 178 SSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK 220

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases [Energy metabolism, Anaerobic, Energy metabolism, Glycolysis/gluconeogenesis]. Length = 299

>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 68/258 (26%), Positives = 102/258 (39%), Gaps = 48/258 (18%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-- 72
            V I GAAG IG  L        +     P++  LHL D+         +  ++   +  
Sbjct: 2   HVLITGAAGQIGYNLLFLIASGELFGDDQPVI--LHLLDI------PPAMKALEGVVMEL 53

Query: 73  -------VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA 125
                  ++G +     E A   +D+ I+    PRKPGM R DL   NA I +   E + 
Sbjct: 54  QDCAFPLLKGVVITTDPEEAFKDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALN 113

Query: 126 KCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLD 184
           K   P   V ++ NP N+   IA    K A    PK    +T LD  RA   VA  LG+ 
Sbjct: 114 KVAKPTVKVLVVGNPANTNALIAL---KNAPNLPPKNFTALTRLDHNRAKAQVARKLGVR 170

Query: 185 PRDV-DVPVVGGHAGVTILPLLSQ-------------VKPPCSFTQEETEYLTNRIQNGG 230
             DV +V + G H+  T +P LS                    +  +E       +Q  G
Sbjct: 171 VSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDE---FVKTVQKRG 226

Query: 231 TEVVEAK--AGAGSATLS 246
             +++ +  + A SA  +
Sbjct: 227 AAIIKKRGASSAASAAKA 244

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 323

>gnl|CDD|133428 cd05292, LDH_2, A subgroup of L-lactate dehydrogenases

 Score = 74.4 bits (184), Expect = 1e-15
 Identities = 58/181 (32%), Positives = 88/181 (48%), Gaps = 16/181 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISH-MDTGAVVRGFL 77
           KVAI+GA G +G   A  + +  L S + L D+ N         D++H       VR + 
Sbjct: 2   KVAIVGA-GFVGSTTAYALLLRGLASEIVLVDI-NKAKAEGEAMDLAHGTPFVKPVRIYA 59

Query: 78  GQPQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
           G     + A    D+V+I AG  +KPG TR DL   N  I + +   I K  P+A + ++
Sbjct: 60  GDYADCKGA----DVVVITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVV 115

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NPV+    +   V  K     P +++G  T+LD  R    + E LG+DPR V   ++G 
Sbjct: 116 TNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYLLGEHLGVDPRSVHAYIIGE 171

Query: 196 H 196
           H
Sbjct: 172 H 172

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 308

>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase

 Score = 72.7 bits (179), Expect = 6e-15
 Identities = 68/242 (28%), Positives = 105/242 (43%), Gaps = 28/242 (11%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        +  K  P+V  LHL D+        GV  ++   D  
Sbjct: 5   RVAVTGAAGQIGYSLLFRIASGELFGKDQPVV--LHLLDIPPAMKALEGVAMEL--EDCA 60

Query: 71  -AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 128
             ++ G +     E A   +D  ++    PRKPGM R DL + N  I +   + + K   
Sbjct: 61  FPLLAGVVATTDPEEAFKDVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAK 120

Query: 129 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+   IA+   K A    PK    +T LD  RA   +A   G+   DV
Sbjct: 121 KDVKVLVVGNPANTNALIAS---KNAPDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDV 177

Query: 189 DVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGAG 241
              ++ G+   T +P  +       P     ++ ++L       +Q  G  V+EA+ GA 
Sbjct: 178 KNVIIWGNHSNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR-GAS 236

Query: 242 SA 243
           SA
Sbjct: 237 SA 238

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. Length = 323

>gnl|CDD|133426 cd05290, LDH_3, A subgroup of L-lactate dehydrogenases

 Score = 72.4 bits (178), Expect = 8e-15
 Identities = 47/127 (37%), Positives = 64/127 (50%), Gaps = 8/127 (6%)

Query: 85  ALTGMDLVIIPAGVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142
                D+++I AG    PG T  R DL   NA I+R +   I K    A + LI+NP++ 
Sbjct: 65  DCADADIIVITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDI 124

Query: 143 TVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
            V IAA  F     Y   K++G  TMLD  R    VA+  G+DP++V   V+G H G   
Sbjct: 125 AVYIAATEFD----YPANKVIGTGTMLDTARLRRIVADKYGVDPKNVTGYVLGEH-GSHA 179

Query: 202 LPLLSQV 208
            P+ S V
Sbjct: 180 FPVWSLV 186

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 307

>gnl|CDD|130819 TIGR01758, MDH_euk_cyt, malate dehydrogenase, NAD-dependent

 Score = 65.3 bits (159), Expect = 2e-12
 Identities = 62/239 (25%), Positives = 96/239 (40%), Gaps = 29/239 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISH--MDTG-A 71
           +V + GAAG IG  L        ML K  P++  LHL D+     V   +    MD    
Sbjct: 1   RVVVTGAAGQIGYALLPMIARGRMLGKDQPII--LHLLDIPPAMKVLEGVVMELMDCAFP 58

Query: 72  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPN 130
           ++ G +       A T +D+ I+    PRK GM R DL + N  I +     + K    +
Sbjct: 59  LLDGVVPTHDPAVAFTDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKD 118

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 189
             V ++ NP N+   + +     A +  PK    +T LD  RA   VAE  G+   DV +
Sbjct: 119 CKVLVVGNPANTNALVLSNY---APSIPPKNFSALTRLDHNRALAQVAERAGVPVSDVKN 175

Query: 190 VPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR-----------IQNGGTEVVEAK 237
           V + G H+  T  P ++         Q+                   +Q  G  ++ A+
Sbjct: 176 VIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR 233

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography. Length = 324

>gnl|CDD|178836 PRK00066, ldh, L-lactate dehydrogenase; Reviewed

 Score = 64.5 bits (158), Expect = 4e-12
 Identities = 45/164 (27%), Positives = 77/164 (46%), Gaps = 16/164 (9%)

Query: 88  GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 147
             DLV+I AG P+KPG TR DL   N  I +++   +     +    + SNPV+    I 
Sbjct: 73  DADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVD----IL 128

Query: 148 AEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH---------- 196
                K   +  ++++G  T LD  R    ++E L +DPR V   ++G H          
Sbjct: 129 TYATWKLSGFPKERVIGSGTSLDSARFRYMLSEKLDVDPRSVHAYIIGEHGDTEFPVWSH 188

Query: 197 AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
           A V  +PL   ++    + +E+ + +   +++   E++E K GA
Sbjct: 189 ANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK-GA 231

Length = 315

>gnl|CDD|133421 cd01336, MDH_cytoplasmic_cytosolic, Cytoplasmic and cytosolic Malate dehydrogenases

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 17/187 (9%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADIS-HMDTGA-- 71
           +V + GAAG I   L        +     P++  LHL D+         +   +   A  
Sbjct: 4   RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVI--LHLLDIPPALKALEGVVMELQDCAFP 61

Query: 72  VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PN 130
           +++  +     E A   +D+ I+   +PRK GM R DL   N  I +   E + K    N
Sbjct: 62  LLKSVVATTDPEEAFKDVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKN 121

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-D 189
             V ++ NP N+   I     K A +   +    +T LD  RA + +A  LG+   DV +
Sbjct: 122 VKVLVVGNPANTNALILL---KYAPSIPKENFTALTRLDHNRAKSQIALKLGVPVSDVKN 178

Query: 190 VPVVGGH 196
           V + G H
Sbjct: 179 VIIWGNH 185

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 325

>gnl|CDD|133429 cd05293, LDH_1, A subgroup of L-lactate dehydrogenases

 Score = 60.7 bits (148), Expect = 8e-11
 Identities = 57/200 (28%), Positives = 89/200 (44%), Gaps = 22/200 (11%)

Query: 20  GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF 76
             KV ++G    G+   +++L K   L   L L DVV     G   D+ H   G+    F
Sbjct: 3   RNKVTVVGVGQVGMACAISILAK--GLADELVLVDVVEDKLKGEAMDLQH---GSA---F 54

Query: 77  LGQPQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
           L  P++E     +      +VI+ AG  +  G +R DL   N  I + +   + K  PNA
Sbjct: 55  LKNPKIEADKDYSVTANSKVVIVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNA 114

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 190
            + ++SNPV+    I   V  K       +++G    LD  R    +AE LG+ P  V  
Sbjct: 115 ILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRYLIAERLGVAPSSVHG 170

Query: 191 PVVGGHAGVTILPLLSQVKP 210
            ++G H G + +P+ S V  
Sbjct: 171 WIIGEH-GDSSVPVWSGVNV 189

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 312

>gnl|CDD|130817 TIGR01756, LDH_protist, lactate dehydrogenase

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 4/135 (2%)

Query: 75  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATV 133
           G +   +LE A   +D   + A VP KPG  R DL   N  I +   E +++   P   V
Sbjct: 47  GTIVTTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGEALSEYAKPTVKV 106

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 193
            +I NPVN+   +A      A     +    + MLD  RA + +A  L +    +   VV
Sbjct: 107 LVIGNPVNTNCLVA---MLHAPKLSAENFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163

Query: 194 GGHAGVTILPLLSQV 208
            G+   +++  L+  
Sbjct: 164 WGNHAESMVADLTHA 178

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule. Length = 313

>gnl|CDD|178212 PLN02602, PLN02602, lactate dehydrogenase

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 62/238 (26%), Positives = 108/238 (45%), Gaps = 34/238 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV--NTPGVTADISHMDTGAVVRGFLGQ 79
           KV+++G  G +G  +A  +    L   L L DV      G   D+ H         FL +
Sbjct: 39  KVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH------AAAFLPR 91

Query: 80  PQL----ENALT-GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
            ++    + A+T G DL I+ AG  + PG +R +L   N  + R +   +AK  P+  + 
Sbjct: 92  TKILASTDYAVTAGSDLCIVTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILL 151

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           ++SNPV+    +A   +K +G +   +++G  T LD  R    +A+ L ++ +DV   +V
Sbjct: 152 IVSNPVDVLTYVA---WKLSG-FPANRVIGSGTNLDSSRFRFLIADHLDVNAQDVQAYIV 207

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKA 238
           G H              GV +L  L   K   ++ +E  E +   + +   EV++ K 
Sbjct: 208 GEHGDSSVALWSSVSVGGVPVLSFLE--KQQIAYEKETLEEIHRAVVDSAYEVIKLKG 263

Length = 350

>gnl|CDD|177744 PLN00135, PLN00135, malate dehydrogenase

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 46/175 (26%), Positives = 83/175 (47%), Gaps = 17/175 (9%)

Query: 27  GAAGGIGQPLAM-LMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLEN 84
           G   G  QP+ + ++ I P    L+        GV  ++  +D    +++G +    +  
Sbjct: 5   GVMLGPDQPVILHMLDIPPAAEALN--------GVKMEL--IDAAFPLLKGVVATTDVVE 54

Query: 85  ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 143
           A  G+++ ++  G PRK GM R D+ + N  I ++    + K   P+  V +++NP N+ 
Sbjct: 55  ACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAAPDCKVLVVANPANTN 114

Query: 144 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHA 197
             I  E    A +   K +  +T LD  RA   ++E LG+   DV +V + G H+
Sbjct: 115 ALILKEF---APSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHS 166

Length = 309

>gnl|CDD|133423 cd01338, MDH_choloroplast_like, Chloroplast-like malate dehydrogenases

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 30/243 (12%)

Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        M     P++  L L ++        GV  ++   +  
Sbjct: 4   RVAVTGAAGQIGYSLLFRIASGEMFGPDQPVI--LQLLELPQALKALEGVAMEL---EDC 58

Query: 71  A--VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C 127
           A  ++   +       A    D  ++    PR PGM R DL   N  I     + +    
Sbjct: 59  AFPLLAEIVITDDPNVAFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVA 118

Query: 128 CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRD 187
             +  V ++ NP N+   IA    K A    P     +T LD  RA + +A+  G+   D
Sbjct: 119 SRDVKVLVVGNPCNTNALIAM---KNAPDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTD 175

Query: 188 VDVPVVGGHAGVTILPLLSQVK---PPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 240
           V   V+ G+   T  P  +       P +    +  +L +     +Q  G  +++A+ GA
Sbjct: 176 VKNMVIWGNHSPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR-GA 234

Query: 241 GSA 243
            SA
Sbjct: 235 SSA 237

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. Length = 322

>gnl|CDD|235468 PRK05442, PRK05442, malate dehydrogenase; Provisional

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 63/243 (25%), Positives = 100/243 (41%), Gaps = 30/243 (12%)

Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTGA 71
           +VA+ GAAG IG  L        ML K  P++  L L ++   P + A    +  +D  A
Sbjct: 6   RVAVTGAAGQIGYSLLFRIASGDMLGKDQPVI--LQLLEI--PPALKALEGVVMELDDCA 61

Query: 72  --VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC- 128
             ++ G +       A    D+ ++    PR PGM R DL   N  I     + + +   
Sbjct: 62  FPLLAGVVITDDPNVAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAA 121

Query: 129 PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+   IA    K A     +    +T LD  RA + +A   G+   D+
Sbjct: 122 RDVKVLVVGNPANTNALIAM---KNAPDLPAENFTAMTRLDHNRALSQLAAKAGVPVADI 178

Query: 189 DVPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN----RIQNGGTEVVEAKAGA 240
               V G+   T  P         KP      ++  +L +     +Q  G  ++EA+ GA
Sbjct: 179 KKMTVWGNHSATQYPDFRHATIDGKPAAEVINDQ-AWLEDTFIPTVQKRGAAIIEAR-GA 236

Query: 241 GSA 243
            SA
Sbjct: 237 SSA 239

Length = 326

>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 99  PRKPGMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA 154
           PR PGM R DL +IN  I     + L E +A    N  V ++ NP N+   I     K A
Sbjct: 187 PRGPGMERADLLDINGQIFAEQGKALNE-VAS--RNVKVIVVGNPCNTNALIC---LKNA 240

Query: 155 GTYDPKKLLGVTMLDVVRA 173
                K    +T LD  RA
Sbjct: 241 PNIPAKNFHALTRLDENRA 259

Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	258
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	100.0
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	100.0
PLN00106	323	malate dehydrogenase	100.0
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	100.0
KOG1495	332	consensus Lactate dehydrogenase [Energy production	100.0
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	100.0
PTZ00325	321	malate dehydrogenase; Provisional	100.0
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	100.0
PRK05086	312	malate dehydrogenase; Provisional	100.0
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	100.0
PLN02602	350	lactate dehydrogenase	100.0
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	100.0
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	100.0
PRK05442	326	malate dehydrogenase; Provisional	100.0
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	100.0
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	100.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	100.0
PLN00112	444	malate dehydrogenase (NADP); Provisional	100.0
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	100.0
PTZ00117	319	malate dehydrogenase; Provisional	100.0
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	100.0
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	100.0
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	100.0
PTZ00082	321	L-lactate dehydrogenase; Provisional	100.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	100.0
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	100.0
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	100.0
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	100.0
PRK06223	307	malate dehydrogenase; Reviewed	100.0
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	100.0
PLN00135	309	malate dehydrogenase	100.0
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	100.0
TIGR01756	313	LDH_protist lactate dehydrogenase. This model repr	100.0
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	100.0
KOG1496	332	consensus Malate dehydrogenase [Energy production	100.0
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	100.0
PRK15076	431	alpha-galactosidase; Provisional	99.93
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	99.93
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	99.93
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	99.88
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	99.86
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	99.84
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	99.83
PF02866	174	Ldh_1_C: lactate/malate dehydrogenase, alpha/beta	99.82
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.04
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.02
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	98.98
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.96
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	98.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	98.87
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.87
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.86
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	98.85
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.8
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	98.8
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	98.78
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.73
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.68
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.66
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.66
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.66
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.64
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	98.6
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.59
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.56
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.56
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	98.54
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.51
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.5
PLN00198	338	anthocyanidin reductase; Provisional	98.5
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.49
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.48
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	98.47
PLN02166	436	dTDP-glucose 4,6-dehydratase	98.47
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.45
PLN02427	386	UDP-apiose/xylose synthase	98.41
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.4
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	98.36
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	98.35
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	98.33
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	98.32
CHL00194	317	ycf39 Ycf39; Provisional	98.32
PLN02695	370	GDP-D-mannose-3',5'-epimerase	98.32
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	98.32
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.31
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	98.3
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.29
PLN02206	442	UDP-glucuronate decarboxylase	98.28
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	98.28
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.28
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.27
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.25
PLN02572	442	UDP-sulfoquinovose synthase	98.25
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	98.25
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.24
PLN02650	351	dihydroflavonol-4-reductase	98.24
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.23
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.21
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	98.2
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	98.2
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.2
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	98.19
PLN02214	342	cinnamoyl-CoA reductase	98.17
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.17
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	98.17
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	98.17
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.17
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	98.15
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	98.14
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	98.14
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.13
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	98.11
PLN02653	340	GDP-mannose 4,6-dehydratase	98.11
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	98.11
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.11
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.09
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	98.06
PRK10675	338	UDP-galactose-4-epimerase; Provisional	98.04
PLN03209	576	translocon at the inner envelope of chloroplast su	98.0
PLN02583	297	cinnamoyl-CoA reductase	97.99
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	97.99
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	97.97
PLN02778	298	3,5-epimerase/4-reductase	97.97
PRK06194	287	hypothetical protein; Provisional	97.96
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.96
PLN02260	668	probable rhamnose biosynthetic enzyme	97.95
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	97.95
PLN02896	353	cinnamyl-alcohol dehydrogenase	97.95
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.94
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.94
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	97.93
PRK07680	273	late competence protein ComER; Validated	97.87
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.87
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.87
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	97.85
PRK08655	437	prephenate dehydrogenase; Provisional	97.84
PRK07417	279	arogenate dehydrogenase; Reviewed	97.84
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.83
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.83
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	97.83
PLN02240	352	UDP-glucose 4-epimerase	97.8
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.79
PLN02688	266	pyrroline-5-carboxylate reductase	97.79
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	97.78
COG2910	211	Putative NADH-flavin reductase [General function p	97.78
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	97.78
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.77
PRK06545	359	prephenate dehydrogenase; Validated	97.77
PLN02256	304	arogenate dehydrogenase	97.76
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	97.76
PRK07201	657	short chain dehydrogenase; Provisional	97.76
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.76
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.73
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.73
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	97.72
PRK08267	260	short chain dehydrogenase; Provisional	97.71
PRK05865	854	hypothetical protein; Provisional	97.71
PRK08643	256	acetoin reductase; Validated	97.69
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.69
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.67
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.67
PLN02686	367	cinnamoyl-CoA reductase	97.65
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.65
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.65
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.65
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.64
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	97.64
PRK12829	264	short chain dehydrogenase; Provisional	97.63
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.63
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	97.62
PRK06924	251	short chain dehydrogenase; Provisional	97.61
PRK06180	277	short chain dehydrogenase; Provisional	97.61
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.6
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	97.6
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	97.6
PRK06182	273	short chain dehydrogenase; Validated	97.6
PRK06482	276	short chain dehydrogenase; Provisional	97.59
PRK12320	699	hypothetical protein; Provisional	97.55
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.55
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.55
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.54
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.53
PRK05717	255	oxidoreductase; Validated	97.52
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.52
PRK12480	330	D-lactate dehydrogenase; Provisional	97.52
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.52
PRK08507	275	prephenate dehydrogenase; Validated	97.51
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	97.51
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	97.51
PRK07326	237	short chain dehydrogenase; Provisional	97.5
PLN02253	280	xanthoxin dehydrogenase	97.5
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.5
PRK07856	252	short chain dehydrogenase; Provisional	97.5
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.5
PRK07067	257	sorbitol dehydrogenase; Provisional	97.48
PRK08219	227	short chain dehydrogenase; Provisional	97.48
PRK07523	255	gluconate 5-dehydrogenase; Provisional	97.48
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.47
PRK10538	248	malonic semialdehyde reductase; Provisional	97.46
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	97.46
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.46
PRK08278	273	short chain dehydrogenase; Provisional	97.46
PRK12828	239	short chain dehydrogenase; Provisional	97.45
PRK07806	248	short chain dehydrogenase; Provisional	97.45
PRK08213	259	gluconate 5-dehydrogenase; Provisional	97.44
PRK06101	240	short chain dehydrogenase; Provisional	97.44
PRK08340	259	glucose-1-dehydrogenase; Provisional	97.44
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.43
PRK07102	243	short chain dehydrogenase; Provisional	97.42
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	97.42
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	97.41
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	97.41
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.4
PRK09135	249	pteridine reductase; Provisional	97.4
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	97.4
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	97.4
PRK05875	276	short chain dehydrogenase; Provisional	97.39
PRK06172	253	short chain dehydrogenase; Provisional	97.38
PRK14982	340	acyl-ACP reductase; Provisional	97.38
PRK08265	261	short chain dehydrogenase; Provisional	97.38
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	97.36
PRK05993	277	short chain dehydrogenase; Provisional	97.35
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.35
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.35
TIGR01746	367	Thioester-redct thioester reductase domain. It has	97.35
PRK13243	333	glyoxylate reductase; Reviewed	97.34
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	97.33
PRK07069	251	short chain dehydrogenase; Validated	97.32
PRK07774	250	short chain dehydrogenase; Provisional	97.32
PRK08263	275	short chain dehydrogenase; Provisional	97.31
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.3
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	97.3
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	97.29
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.29
PLN02712	667	arogenate dehydrogenase	97.28
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.28
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.28
PRK12367	245	short chain dehydrogenase; Provisional	97.28
PRK06179	270	short chain dehydrogenase; Provisional	97.27
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.27
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	97.27
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.26
PRK07814	263	short chain dehydrogenase; Provisional	97.26
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.26
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	97.24
PRK09291	257	short chain dehydrogenase; Provisional	97.23
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.23
PRK08264	238	short chain dehydrogenase; Validated	97.23
PRK06914	280	short chain dehydrogenase; Provisional	97.22
PRK12937	245	short chain dehydrogenase; Provisional	97.22
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.21
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.21
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.21
PRK12939	250	short chain dehydrogenase; Provisional	97.19
PRK06198	260	short chain dehydrogenase; Provisional	97.19
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	97.19
PRK08818	370	prephenate dehydrogenase; Provisional	97.18
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.18
PRK07576	264	short chain dehydrogenase; Provisional	97.18
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.18
PRK06181	263	short chain dehydrogenase; Provisional	97.17
PRK07074	257	short chain dehydrogenase; Provisional	97.17
PRK05876	275	short chain dehydrogenase; Provisional	97.17
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	97.17
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.17
PRK06841	255	short chain dehydrogenase; Provisional	97.16
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.16
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	97.16
PRK05650	270	short chain dehydrogenase; Provisional	97.16
PRK06196	315	oxidoreductase; Provisional	97.15
PRK07060	245	short chain dehydrogenase; Provisional	97.15
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.14
PRK07024	257	short chain dehydrogenase; Provisional	97.14
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.14
PRK07063	260	short chain dehydrogenase; Provisional	97.14
PRK07574	385	formate dehydrogenase; Provisional	97.14
PRK12742	237	oxidoreductase; Provisional	97.13
PLN00016	378	RNA-binding protein; Provisional	97.13
PRK07985	294	oxidoreductase; Provisional	97.13
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.12
PRK06398	258	aldose dehydrogenase; Validated	97.12
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	97.11
PRK05855	582	short chain dehydrogenase; Validated	97.11
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	97.11
PRK07832	272	short chain dehydrogenase; Provisional	97.1
PLN02712	667	arogenate dehydrogenase	97.09
PRK07109	334	short chain dehydrogenase; Provisional	97.09
PRK07890	258	short chain dehydrogenase; Provisional	97.09
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	97.08
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.06
PRK08605	332	D-lactate dehydrogenase; Validated	97.06
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	97.06
PRK07453	322	protochlorophyllide oxidoreductase; Validated	97.05
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.04
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.04
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.04
PRK07023	243	short chain dehydrogenase; Provisional	97.04
PRK08251	248	short chain dehydrogenase; Provisional	97.04
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.03
PRK05866	293	short chain dehydrogenase; Provisional	97.03
PRK05693	274	short chain dehydrogenase; Provisional	97.03
PRK07825	273	short chain dehydrogenase; Provisional	97.02
PRK06701	290	short chain dehydrogenase; Provisional	97.02
PRK06057	255	short chain dehydrogenase; Provisional	97.01
PLN02780	320	ketoreductase/ oxidoreductase	97.01
PRK06128	300	oxidoreductase; Provisional	97.01
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	97.01
PLN02383	344	aspartate semialdehyde dehydrogenase	97.0
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	97.0
PRK12746	254	short chain dehydrogenase; Provisional	97.0
PRK07454	241	short chain dehydrogenase; Provisional	97.0
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.99
PRK05867	253	short chain dehydrogenase; Provisional	96.99
PRK12743	256	oxidoreductase; Provisional	96.99
PLN03139	386	formate dehydrogenase; Provisional	96.98
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.98
PRK06197	306	short chain dehydrogenase; Provisional	96.98
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	96.98
PRK12827	249	short chain dehydrogenase; Provisional	96.98
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.97
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	96.97
PRK05854	313	short chain dehydrogenase; Provisional	96.97
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.97
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.95
PRK07904	253	short chain dehydrogenase; Provisional	96.95
PLN02996	491	fatty acyl-CoA reductase	96.95
PRK05884	223	short chain dehydrogenase; Provisional	96.95
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	96.94
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.94
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	96.93
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.92
PRK06500	249	short chain dehydrogenase; Provisional	96.92
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	96.92
PLN02928	347	oxidoreductase family protein	96.92
PLN02260	668	probable rhamnose biosynthetic enzyme	96.91
PRK06138	252	short chain dehydrogenase; Provisional	96.9
PRK07577	234	short chain dehydrogenase; Provisional	96.9
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.9
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.9
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.89
PRK06124	256	gluconate 5-dehydrogenase; Provisional	96.89
PRK06953	222	short chain dehydrogenase; Provisional	96.88
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.88
PRK08589	272	short chain dehydrogenase; Validated	96.88
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	96.88
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.87
PRK12935	247	acetoacetyl-CoA reductase; Provisional	96.87
PRK09186	256	flagellin modification protein A; Provisional	96.86
PRK06949	258	short chain dehydrogenase; Provisional	96.85
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	96.85
PRK08226	263	short chain dehydrogenase; Provisional	96.85
PRK09242	257	tropinone reductase; Provisional	96.84
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.84
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.84
PRK09009	235	C factor cell-cell signaling protein; Provisional	96.84
PRK07097	265	gluconate 5-dehydrogenase; Provisional	96.83
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.83
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	96.83
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.83
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.82
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.82
PRK07478	254	short chain dehydrogenase; Provisional	96.81
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	96.81
TIGR02415	254	23BDH acetoin reductases. One member of this famil	96.81
PRK08177	225	short chain dehydrogenase; Provisional	96.81
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.8
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.8
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	96.8
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.79
PRK08339	263	short chain dehydrogenase; Provisional	96.76
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.75
PRK06523	260	short chain dehydrogenase; Provisional	96.75
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	96.75
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.75
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.73
PRK07062	265	short chain dehydrogenase; Provisional	96.73
PRK12744	257	short chain dehydrogenase; Provisional	96.73
PRK07677	252	short chain dehydrogenase; Provisional	96.73
PRK08324	681	short chain dehydrogenase; Validated	96.73
PRK07340	304	ornithine cyclodeaminase; Validated	96.73
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.72
PRK08628	258	short chain dehydrogenase; Provisional	96.71
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	96.71
PRK12747	252	short chain dehydrogenase; Provisional	96.71
PRK06483	236	dihydromonapterin reductase; Provisional	96.7
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.7
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	96.7
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	96.69
PRK12824	245	acetoacetyl-CoA reductase; Provisional	96.68
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.68
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.68
PRK08936	261	glucose-1-dehydrogenase; Provisional	96.67
PRK07035	252	short chain dehydrogenase; Provisional	96.66
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	96.65
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.65
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.65
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.64
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.64
PRK07831	262	short chain dehydrogenase; Provisional	96.64
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	96.64
PRK09072	263	short chain dehydrogenase; Provisional	96.63
PLN02494	477	adenosylhomocysteinase	96.61
PRK06139	330	short chain dehydrogenase; Provisional	96.6
PRK07578	199	short chain dehydrogenase; Provisional	96.6
PRK09134	258	short chain dehydrogenase; Provisional	96.6
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	96.6
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.6
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.6
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.58
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.57
PRK06947	248	glucose-1-dehydrogenase; Provisional	96.57
PRK05599	246	hypothetical protein; Provisional	96.55
PRK08291	330	ectoine utilization protein EutC; Validated	96.55
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.54
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.54
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.54
PRK08703	239	short chain dehydrogenase; Provisional	96.54
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.54
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.54
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.53
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.53
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.53
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.53
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
PRK06114	254	short chain dehydrogenase; Provisional	96.52
PRK05872	296	short chain dehydrogenase; Provisional	96.52
PRK08223	287	hypothetical protein; Validated	96.51
PRK08618	325	ornithine cyclodeaminase; Validated	96.5
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.48
PRK06407	301	ornithine cyclodeaminase; Provisional	96.48
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.47
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	96.46
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.46
KOG0409	327	consensus Predicted dehydrogenase [General functio	96.45
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.43
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.43
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.42
PRK06901	322	aspartate-semialdehyde dehydrogenase; Provisional	96.42
PRK06141	314	ornithine cyclodeaminase; Validated	96.41
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.41
PRK09496	453	trkA potassium transporter peripheral membrane com	96.41
PRK06940	275	short chain dehydrogenase; Provisional	96.4
PRK07775	274	short chain dehydrogenase; Provisional	96.4
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.39
PLN00203	519	glutamyl-tRNA reductase	96.38
PLN02858	1378	fructose-bisphosphate aldolase	96.38
PRK06436	303	glycerate dehydrogenase; Provisional	96.38
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	96.38
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.37
PRK08017	256	oxidoreductase; Provisional	96.36
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	96.35
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.35
PRK06823	315	ornithine cyclodeaminase; Validated	96.34
PRK08862	227	short chain dehydrogenase; Provisional	96.34
PRK12938	246	acetyacetyl-CoA reductase; Provisional	96.32
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	96.3
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.3
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.3
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.28
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.27
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.27
PRK07201	657	short chain dehydrogenase; Provisional	96.26
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.26
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.26
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.25
PRK07589	346	ornithine cyclodeaminase; Validated	96.25
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	96.25
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.25
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	96.25
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.23
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.23
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.22
PRK06125	259	short chain dehydrogenase; Provisional	96.22
PRK06123	248	short chain dehydrogenase; Provisional	96.21
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.21
PLN02503	605	fatty acyl-CoA reductase 2	96.21
PRK06484	520	short chain dehydrogenase; Validated	96.19
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.15
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.14
PRK06484	520	short chain dehydrogenase; Validated	96.14
PLN02306	386	hydroxypyruvate reductase	96.12
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	96.11
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.11
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.09
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.09
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.09
COG2344	211	AT-rich DNA-binding protein [General function pred	96.09
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.07
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.0
PRK06046	326	alanine dehydrogenase; Validated	95.99
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	95.98
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.98
PRK06932	314	glycerate dehydrogenase; Provisional	95.96
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.93
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.92
PRK06444	197	prephenate dehydrogenase; Provisional	95.92
PRK06199	379	ornithine cyclodeaminase; Validated	95.92
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	95.91
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	95.91

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=100.00  E-value=7.3e-61  Score=428.35  Aligned_cols=237  Identities=71%  Similarity=1.094  Sum_probs=219.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+||||+|+||+++++.|+.+++++||+|+|++..+|+++||.|+..+..+....+++|++++++|||+||+|+|.|+
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            69999998899999999999999999999999999558999999999754455432234566789999999999999999


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHH
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  180 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~  180 (258)
                      +||++|+|++..|+++++++++.|.+++|++|+|++|||+|+||+++++++++.+++|++||||+|.|||+|+++++|++
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~  160 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL  160 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       181 l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +|+++++|+++|||||+||++||+||++.+..+++++++++|.++++++|++|+++|.|||+++||+|.++++++++
T Consensus       161 l~v~~~~V~~~v~GeHsGds~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~a  237 (310)
T cd01337         161 LGLDPAKVNVPVIGGHSGVTILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFANS  237 (310)
T ss_pred             hCcCHHHEEEEEEecCCCCceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHHH
Confidence            99999999999999997799999999999876677667899999999999999999767899999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=4.9e-59  Score=417.22  Aligned_cols=236  Identities=63%  Similarity=0.990  Sum_probs=214.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  101 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~  101 (258)
                      ||+||||+|+||+++++.|+.+++++||+|+|+++..|+++||.|......+..+.+.+|++++++|||+||+++|.|++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            79999988999999999999999999999999998889999999987433443222223456899999999999999999


Q ss_pred             CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHh
Q 025075          102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL  181 (258)
Q Consensus       102 ~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l  181 (258)
                      ||++|+|++..|+++++++++.|.+++|++++|++|||+|+|++++++++++.+++|++||||+|.|||+||+++||+++
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l  160 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK  160 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          182 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       182 ~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +++|++|+++||||||+++++|+||+++....++++++++|.++++++|++|+++|.|||+++||+|.++++++++
T Consensus       161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~a  236 (312)
T TIGR01772       161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVLS  236 (312)
T ss_pred             CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHHH
Confidence            9999999999999996669999999998533356666899999999999999998767899999999999999863

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN00106 malate dehydrogenase

Probab=100.00  E-value=1.1e-57  Score=410.03  Aligned_cols=248  Identities=79%  Similarity=1.175  Sum_probs=230.4

Q ss_pred             hHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           10 AKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        10 ~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +-||.++...+.||+||||+|+||+++++.|..+++++||+|+|+++.+++++||.|+.....+..+.+++|++++++||
T Consensus         8 ~~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~a   87 (323)
T PLN00106          8 RACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGA   87 (323)
T ss_pred             hccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCC
Confidence            45889988888899999988999999999999999999999999998888899999998755565544567888999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeecc
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~ld  169 (258)
                      |+||+++|.|++||++|+|++..|.++++++++.+.+++|+++++++|||+|.+++++++++++.+++||+|+||+|.||
T Consensus        88 DiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LD  167 (323)
T PLN00106         88 DLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLD  167 (323)
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHH
Q 025075          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL  249 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~  249 (258)
                      ++||++++|+++|+++.+|+++|+|||||++|||+||++.|..+++++++++|.++++++|++|+++|.|||+++||+|.
T Consensus       168 s~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~  247 (323)
T PLN00106        168 VVRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAY  247 (323)
T ss_pred             HHHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHH
Confidence            99999999999999999999999999988899999999988656777779999999999999999987678999999999


Q ss_pred             HHHHhHhc
Q 025075          250 NLRMHASV  257 (258)
Q Consensus       250 a~~~~~~~  257 (258)
                      ++++++++
T Consensus       248 a~~~ii~a  255 (323)
T PLN00106        248 AAARFADA  255 (323)
T ss_pred             HHHHHHHH
Confidence            99999874

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=100.00  E-value=3.4e-57  Score=401.29  Aligned_cols=227  Identities=41%  Similarity=0.618  Sum_probs=201.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||| |+||+++++.|..+++.+|++|+|++++  +|.++||.|+.+..  ..+.. ++.+ +++++|||+||++|
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~-~~~~-y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKIT-GDGD-YEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEe-cCCC-hhhhcCCCEEEEeC
Confidence            59999998 9999999999988888779999999964  89999999998643  33332 2234 47899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.||||||+|+||+..|++|++++++++.+++||++++++|||+|    ++++++++.+++|++||||+ |.|||+||++
T Consensus        78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD----~~ty~~~k~sg~p~~rvig~gt~LDsaR~~~  153 (313)
T COG0039          78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVD----ILTYIAMKFSGFPKNRVIGSGTVLDSARFRT  153 (313)
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHH----HHHHHHHHhcCCCccceecccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    55556788889999999999 8999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC----CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  247 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~----~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~  247 (258)
                      +||+++++++++|++||+|+| ||+|||+||++++    +.+    .+++++++|.++||++|++|++.| |.+ ++||+
T Consensus       154 ~lae~~~v~~~~V~~~ViGeH-Gdt~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~  230 (313)
T COG0039         154 FLAEKLGVSPKDVHAYVIGEH-GDTMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP  230 (313)
T ss_pred             HHHHHhCCChhHceeeEeccC-CCceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence            999999999999999999988 8999999999983    322    234578999999999999999998 555 99999


Q ss_pred             HHHHHHhHhc
Q 025075          248 RLNLRMHASV  257 (258)
Q Consensus       248 a~a~~~~~~~  257 (258)
                      |.++++++++
T Consensus       231 A~a~a~~~~a  240 (313)
T COG0039         231 AAALARMVEA  240 (313)
T ss_pred             HHHHHHHHHH
Confidence            9999999864

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2e-54  Score=368.78  Aligned_cols=241  Identities=24%  Similarity=0.353  Sum_probs=212.4

Q ss_pred             hHHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC-eEEEEeCCCc
Q 025075            5 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA-VVRGFLGQPQ   81 (258)
Q Consensus         5 ~~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~-~v~~~~~~~d   81 (258)
                      ++|.....+.. +.+..||.|+|+ |.||.++++.+..+++.+|++|+|.++.  +|+.|||+|..... .-+.. .+.|
T Consensus         6 ~~~~~~~~~~~-~~~~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~-~~~D   82 (332)
T KOG1495|consen    6 SELIANSAEEK-EFKHNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVV-ASKD   82 (332)
T ss_pred             hhhhhcccccc-cccCceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceE-ecCc
Confidence            34555555444 344679999998 9999999999999999999999999986  89999999997422 22222 2456


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      + .+.+++++||+|||..+++|++|++++++|+.|++.+.+++.+|.|+++++++|||+|    ++||+.|+.++||++|
T Consensus        83 y-~~sa~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVD----ilTYv~wKLSgfP~nR  157 (332)
T KOG1495|consen   83 Y-SVSANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVD----ILTYVTWKLSGFPKNR  157 (332)
T ss_pred             c-cccCCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchH----HHHHHHHHHcCCcccc
Confidence            5 6899999999999999999999999999999999999999999999999999999999    7777889999999999


Q ss_pred             EEEE-eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC------------CCCCHHHHHHHHHHHHh
Q 025075          162 LLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP------------CSFTQEETEYLTNRIQN  228 (258)
Q Consensus       162 viG~-t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~------------~~~~~~~~~~i~~~v~~  228 (258)
                      |||. |.|||+|||++++++||++|++++++++||| ||+.||+||.+.+.            ...+++.|+++.+++.+
T Consensus       158 ViGsGcnLDsaRFryLi~~~Lg~~pss~hgwIiGEH-GdSsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~  236 (332)
T KOG1495|consen  158 VIGSGCNLDSARFRYLIGNRLGVHPSSCHGWIIGEH-GDSSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVD  236 (332)
T ss_pred             eeccCcCccHHHHHHHHHHHhCCCcccceEEEeecc-CCccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHH
Confidence            9999 9999999999999999999999999999999 89999999998732            12467779999999999


Q ss_pred             hHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          229 GGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       229 ~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      .+|+|+++|   |+|+|++|.++|+++++
T Consensus       237 sayeviklK---GyTswaIglsva~l~~a  262 (332)
T KOG1495|consen  237 SAYEVIKLK---GYTSWAIGLSVADLAQA  262 (332)
T ss_pred             HHHHHHHhc---CchHHHHHHHHHHHHHH
Confidence            999999986   79999999999999864

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=3.3e-54  Score=385.91  Aligned_cols=224  Identities=27%  Similarity=0.382  Sum_probs=198.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-C--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-G--AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~--~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||+|||+ |+||+++|+.|+.+++++||+|+|+++.  +|+++||.|... .  ..++...  .| +++++|||+||+||
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita   76 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA   76 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence            7999998 9999999999999999999999999875  799999999754 2  2344432  45 47899999999999


Q ss_pred             CCCCCCCCc--hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           97 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        97 g~~~~~g~~--r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      |.|++||++  |+|++..|++|++++++++.+++|++++|++|||+|    ++++++++.++||++||||+ |.|||+||
T Consensus        77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvD----v~t~~~~k~sg~p~~rviG~gt~LDs~R~  152 (307)
T cd05290          77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLD----IAVYIAATEFDYPANKVIGTGTMLDTARL  152 (307)
T ss_pred             CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHH----HHHHHHHHHhCcChhheecccchHHHHHH
Confidence            999999999  699999999999999999999999999999999999    55566778888999999999 89999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C------CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~  243 (258)
                      ++++|+++|++|++|++|||||| ||+++|+||++++..    +      .++.++++|.++++++|++|+++|   |++
T Consensus       153 ~~~la~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~K---G~t  228 (307)
T cd05290         153 RRIVADKYGVDPKNVTGYVLGEH-GSHAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNRK---GWT  228 (307)
T ss_pred             HHHHHHHhCCCcccEEEEEEecC-CCceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHcc---Cee
Confidence            99999999999999999999999 789999999998421    1      123357899999999999999964   789


Q ss_pred             HHHHHHHHHHhHhc
Q 025075          244 TLSMRLNLRMHASV  257 (258)
Q Consensus       244 ~~s~a~a~~~~~~~  257 (258)
                      +|++|.++++++++
T Consensus       229 ~~~ia~a~~~ii~a  242 (307)
T cd05290         229 NAGIAKSASRLIKA  242 (307)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00325 malate dehydrogenase; Provisional

Probab=100.00  E-value=4.3e-53  Score=379.96  Aligned_cols=238  Identities=62%  Similarity=0.927  Sum_probs=210.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      -.+|.||+||||+|+||+++++.|...++++||+|+|++..+++++||.|......+.......+++++++|||+||+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            45778999999889999999999998899999999999666899999999875433433221134368999999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  176 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~  176 (258)
                      |.|++++++|.+++..|+++++++++.+++++|+++++++|||+|.|+++..+.+++.+++||+||||++.|||+||+++
T Consensus        85 G~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~  164 (321)
T PTZ00325         85 GVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKF  164 (321)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987776544446788899999999988999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCC-ceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGV-TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA  255 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~-~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~  255 (258)
                      ||+++|++|++|++|||||| || ++||+||++.  .+++++++++|.++++++|++|+++|+|||+|+||+|.++++++
T Consensus       165 la~~l~v~~~~V~~~VlGeH-Gd~s~v~~~S~~g--~~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~  241 (321)
T PTZ00325        165 VAEALGMNPYDVNVPVVGGH-SGVTIVPLLSQTG--LSLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWS  241 (321)
T ss_pred             HHHHhCcChhheEEEEEeec-CCcccccchhccC--CCCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHH
Confidence            99999999999999999999 67 8999999993  34666779999999999999999998778999999999999998


Q ss_pred             hc
Q 025075          256 SV  257 (258)
Q Consensus       256 ~~  257 (258)
                      ++
T Consensus       242 ~a  243 (321)
T PTZ00325        242 TS  243 (321)
T ss_pred             HH
Confidence            64

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=2.8e-53  Score=380.88  Aligned_cols=227  Identities=26%  Similarity=0.367  Sum_probs=201.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||| |+||+++++.|+.+++++||+|+|+++.  +|+++||.|+... .... +..++|+ ++++|||+||+++
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~-v~~~~dy-~~~~~adivvita   79 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPK-IEADKDY-SVTANSKVVIVTA   79 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCE-EEECCCH-HHhCCCCEEEECC
Confidence            459999998 9999999999999999999999999875  7999999999732 1122 2334566 5799999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.+++||++|+|++..|+++++++++.|++++|++++|++|||+|    ++++++++.+++|++||||+ |.||++|+++
T Consensus        80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~k~sg~p~~~viG~gt~Ld~~R~~~  155 (312)
T cd05293          80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVD----IMTYVAWKLSGLPKHRVIGSGCNLDSARFRY  155 (312)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHH----HHHHHHHHHhCCCHHHEEecCchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    56667778888999999999 9999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C--------CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~--------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~  243 (258)
                      ++|+++++++++|+++||||| |++++|+||++++..    +        .+++++++|.++++++|++|+++|   |++
T Consensus       156 ~la~~l~v~~~~v~~~v~GeH-G~s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t  231 (312)
T cd05293         156 LIAERLGVAPSSVHGWIIGEH-GDSSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKLK---GYT  231 (312)
T ss_pred             HHHHHhCCChhhEEEEEeecC-CCCccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHhc---CCc
Confidence            999999999999999999999 799999999998421    1        223458899999999999999965   789


Q ss_pred             HHHHHHHHHHhHhc
Q 025075          244 TLSMRLNLRMHASV  257 (258)
Q Consensus       244 ~~s~a~a~~~~~~~  257 (258)
                      +|++|.++++++++
T Consensus       232 ~~~~a~a~~~ii~a  245 (312)
T cd05293         232 SWAIGLSVADLVDA  245 (312)
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK05086 malate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-52  Score=377.03  Aligned_cols=235  Identities=60%  Similarity=0.926  Sum_probs=209.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+||||+|.||+++++.|.. .+...+|+|+|+++. .++++|+.|......+... ..+|++++++|+|+||+|+|.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence            6999999999999999998865 567789999999764 5677899885322233321 145767899999999999999


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  178 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la  178 (258)
                      +++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+|+++++|
T Consensus        80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia  159 (312)
T PRK05086         80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA  159 (312)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888889899999999999999999999999


Q ss_pred             HHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       179 ~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      ++++++|++|+++||||||++++||+||++ ...+++++++++|.++++++|++|+++|.|+|+|+||+|.++++++++
T Consensus       160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~a  237 (312)
T PRK05086        160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGLS  237 (312)
T ss_pred             HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHHH
Confidence            999999999999999999777999999999 444577777999999999999999999877899999999999999864

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=2.1e-53  Score=364.05  Aligned_cols=241  Identities=74%  Similarity=1.128  Sum_probs=231.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +..++.||+|+||+|.+|+.+..+|.+.++++++.|||+....|.+.||.|...+..+..+.+..++++++++||+|||-
T Consensus        24 ~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP  103 (345)
T KOG1494|consen   24 GSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP  103 (345)
T ss_pred             cccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence            35556799999999999999999999999999999999998899999999999888888887777899999999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT  175 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~  175 (258)
                      ||+||||||+|+|++..|+.|+++++..+.++||+|.+.++|||+|++++++++++++.+-|+|+|++|+|.||..|.+.
T Consensus       104 AGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPIaaevlKk~G~ydpkklfGVTtLDvVRA~t  183 (345)
T KOG1494|consen  104 AGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDVVRANT  183 (345)
T ss_pred             CCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchHHHHHHHHcCCCCccceeceehhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCC-CceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHh
Q 025075          176 FVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH  254 (258)
Q Consensus       176 ~la~~l~v~~-~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~  254 (258)
                      ++++.++++| ++++++|+|+|.|.|++|++|++.|...+++++++.|+.+++.+|.||++.|.|+||+.+|+|+|.++|
T Consensus       184 Fv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~RiQ~gGtEVV~AKaGaGSATLSMAyAga~f  263 (345)
T KOG1494|consen  184 FVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHRIQNGGTEVVKAKAGAGSATLSMAYAGAKF  263 (345)
T ss_pred             HHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHHHHhCCceEEEeccCCCchhhhHHHHHHHH
Confidence            9999999999 669999999999999999999999988899999999999999999999999999999999999999999


Q ss_pred             Hh
Q 025075          255 AS  256 (258)
Q Consensus       255 ~~  256 (258)
                      +.
T Consensus       264 a~  265 (345)
T KOG1494|consen  264 AD  265 (345)
T ss_pred             HH
Confidence            85

>PLN02602 lactate dehydrogenase

Probab=100.00  E-value=2.7e-52  Score=378.82  Aligned_cols=226  Identities=26%  Similarity=0.405  Sum_probs=199.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +||+|||+ |.||+++++.|+.+++++||+|+|++++  +|+++||.|+.. ...... ..+.|+ ++++|||+||++||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i-~~~~dy-~~~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKI-LASTDY-AVTAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEE-EeCCCH-HHhCCCCEEEECCC
Confidence            69999998 9999999999999999999999999885  799999999863 212332 233454 67999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~  176 (258)
                      .|++||++|+|++..|+++++++++.|+++||++++|++|||+|+    +++++++.+++|++||||+ |.||++|++++
T Consensus       115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv----~t~~~~k~sg~p~~rviG~gt~LDs~R~r~~  190 (350)
T PLN02602        115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDV----LTYVAWKLSGFPANRVIGSGTNLDSSRFRFL  190 (350)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHH----HHHHHHHHhCCCHHHEEeecchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999994    5555667778999999999 69999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CC--------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PC--------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~--------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      ||+++|+++++|+++||||| |++++|+||++++    +.        .+++++++++.++++++|++|++.|   |+|+
T Consensus       191 lA~~l~v~~~~V~~~ViGeH-Gds~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~K---G~t~  266 (350)
T PLN02602        191 IADHLDVNAQDVQAYIVGEH-GDSSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKLK---GYTS  266 (350)
T ss_pred             HHHHhCCCccceeeeEEecC-CCceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhcC---CccH
Confidence            99999999999999999999 7999999999873    11        1344558899999999999999954   7899


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      |++|.++++++++
T Consensus       267 ~gia~a~a~ii~a  279 (350)
T PLN02602        267 WAIGYSVASLVRS  279 (350)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=100.00  E-value=1.2e-52  Score=377.88  Aligned_cols=228  Identities=28%  Similarity=0.388  Sum_probs=197.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCCC--eEEEEeCCCchHhhhC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGA--VVRGFLGQPQLENALT   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~   87 (258)
                      +|.||+||||+|+||+++++.|..+++++     ||+|+|+++    .+|+++||.|+.++.  .+...  + +.+++++
T Consensus         2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~-~~~~~~~   78 (323)
T TIGR01759         2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--T-DPEEAFK   78 (323)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--c-ChHHHhC
Confidence            56899999988999999999999999999     999999965    389999999997321  22221  2 3358999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~  165 (258)
                      |||+||+|||.|++||++|+|++..|++++++++++|.+++| +++++++|||+|+    +++++++.+ +||++||||+
T Consensus        79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv----~t~v~~k~s~g~p~~rViG~  154 (323)
T TIGR01759        79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANT----NALIASKNAPDIPPKNFSAM  154 (323)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCHHHEEEe
Confidence            999999999999999999999999999999999999999998 9999999999995    555667777 8999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~~k  237 (258)
                      |.|||+|||++||++++++|++|+ .+||||| |++++|+||++++.    .+ +++++  +++|.++++++|++|+++|
T Consensus       155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  233 (323)
T TIGR01759       155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNH-SNTQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR  233 (323)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEecC-CCceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc
Confidence            999999999999999999999996 5699999 68999999999853    22 33332  6899999999999999965


Q ss_pred             CCCCchHH-HHHHHHHHhHhc
Q 025075          238 AGAGSATL-SMRLNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~-s~a~a~~~~~~~  257 (258)
                         |+++| ++|.++++++++
T Consensus       234 ---G~t~~~~~a~a~~~iv~a  251 (323)
T TIGR01759       234 ---GASSAASAANAAIDHVRD  251 (323)
T ss_pred             ---CCcchHHHHHHHHHHHHH
Confidence               56888 577999999874

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=100.00  E-value=4.2e-52  Score=371.42  Aligned_cols=221  Identities=25%  Similarity=0.411  Sum_probs=196.1

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        25 IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+ |+||+++++.|+.+++++||+|+|+++.  +|+++||.|+.+..  .+...  ..| +++++|||+||+++|.|+
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence            6898 9999999999999999999999999875  89999999997432  23332  244 479999999999999999


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHHH
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE  179 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la~  179 (258)
                      +||++|+|++..|+++++++++.|++++|++++|++|||+|    ++++++++.+++|++||||+ |.|||+|+++++|+
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d----~~t~~~~~~sg~p~~~viG~gt~LDs~R~~~~la~  152 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVD----ILTYVAWKLSGFPKNRVIGSGTVLDTARLRYLLAE  152 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHH----HHHHHHHHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999    55566777788999999999 89999999999999


Q ss_pred             HhCCCCCceeEEEEecCCCCceeeccCCCCC----CCCC-------CHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHH
Q 025075          180 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCSF-------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  248 (258)
Q Consensus       180 ~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~~-------~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a  248 (258)
                      ++++++++|+++||||| |++++|+||++++    +.++       ++.++++|.++++++|++|+++|   |+++|++|
T Consensus       153 ~l~v~~~~V~~~v~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---G~t~~~~a  228 (299)
T TIGR01771       153 KLGVDPQSVHAYIIGEH-GDSEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINRK---GATYYGIG  228 (299)
T ss_pred             HhCcCcCeEEEEEEecC-CCceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhcC---CeeeHHHH
Confidence            99999999999999999 7999999999984    2222       23357899999999999999964   78999999


Q ss_pred             HHHHHhHhc
Q 025075          249 LNLRMHASV  257 (258)
Q Consensus       249 ~a~~~~~~~  257 (258)
                      .++++++++
T Consensus       229 ~a~~~~i~a  237 (299)
T TIGR01771       229 MAVARIVEA  237 (299)
T ss_pred             HHHHHHHHH
Confidence            999999874

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK05442 malate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-52  Score=373.99  Aligned_cols=228  Identities=23%  Similarity=0.351  Sum_probs=197.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCC--CeEEEEeCCCchHhhhC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   87 (258)
                      +|+||+||||+|+||+++++.|...++++     ||+|+|+++    .+|+++||.|+.++  ..+...  +.+ +++++
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~   79 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK   79 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence            46799999987999999999999999999     999999954    27899999999732  223322  233 58999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~  165 (258)
                      |||+||++||.|++||++|+|++..|++++++++++|.+++ |++++|++|||+|+||    +++++.+ +||++||||+
T Consensus        80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t----~v~~k~s~g~p~~rViG~  155 (326)
T PRK05442         80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNA----LIAMKNAPDLPAENFTAM  155 (326)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHH----HHHHHHcCCCCHHHEEee
Confidence            99999999999999999999999999999999999999988 7999999999999544    4556666 8999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEE-EEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~-v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~~k  237 (258)
                      |.|||+||+++||++++++|++|+++ ||||| |+++||+||++++.    .+ +++++  +++|.++++++|++|+++|
T Consensus       156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeH-G~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  234 (326)
T PRK05442        156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNH-SATQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEAR  234 (326)
T ss_pred             eHHHHHHHHHHHHHHhCcChHHeEEeEEEECC-cCceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhCc
Confidence            99999999999999999999999986 59999 68999999999853    22 33333  6799999999999999965


Q ss_pred             CCCCchHHHHHHH-HHHhHhc
Q 025075          238 AGAGSATLSMRLN-LRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a~a-~~~~~~~  257 (258)
                         |+++|++|.+ +++++++
T Consensus       235 ---G~t~~~~a~~~~~~iv~a  252 (326)
T PRK05442        235 ---GASSAASAANAAIDHVRD  252 (326)
T ss_pred             ---CCccHHHHHHHHHHHHHH
Confidence               6789999999 5899874

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=100.00  E-value=1.4e-50  Score=364.15  Aligned_cols=226  Identities=25%  Similarity=0.397  Sum_probs=200.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||| |.||+++++.|+..++++||+|+|++++  +|+++||.|+... ..+...  +++ +++++|||+||+++
T Consensus         6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita   81 (315)
T PRK00066          6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA   81 (315)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence            369999998 9999999999999999999999999875  7999999998642 233333  244 47899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.|++||++|+|++..|+++++++++.+++++|+++++++|||+|+    +++++++.+++|++||||+ |.|||+|+++
T Consensus        82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~----~~~~~~k~sg~p~~~viG~gt~LDs~R~~~  157 (315)
T PRK00066         82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDI----LTYATWKLSGFPKERVIGSGTSLDSARFRY  157 (315)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHH----HHHHHHHHhCCCHHHEeecCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999995    4455666678999999999 7999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC-----------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      ++|+++|+++++|+++||||| |++++|+||++++..           .+++++++++.++++++|++|++.|   |+++
T Consensus       158 ~la~~l~v~~~~V~~~viGeH-G~s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~k---g~t~  233 (315)
T PRK00066        158 MLSEKLDVDPRSVHAYIIGEH-GDTEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEKK---GATY  233 (315)
T ss_pred             HHHHHhCCCcccEEEEEEecC-CCcceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhcC---Ceeh
Confidence            999999999999999999999 889999999998521           1455678899999999999999964   6899


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      |++|.++++++++
T Consensus       234 ~~~a~~~~~i~~a  246 (315)
T PRK00066        234 YGIAMALARITKA  246 (315)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=100.00  E-value=7.8e-50  Score=365.24  Aligned_cols=228  Identities=24%  Similarity=0.305  Sum_probs=193.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhh
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENAL   86 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~--D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~   86 (258)
                      .++.||+||||+|+||+++++.|..+++++     +|+|+  |++++  +|+++||.|+.++  ..+..  .+.+ ++++
T Consensus        42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i--~~~~-y~~~  118 (387)
T TIGR01757        42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSI--GIDP-YEVF  118 (387)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEE--ecCC-HHHh
Confidence            346899999988999999999999999998     57777  55554  7999999998732  12322  2334 5899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      +|||+||+++|.|++||++|+|++..|++|++++++.|++++ |++++|++|||+|+|    ++++++.+++||+|+||+
T Consensus       119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~----t~v~~k~sg~~~~rviG~  194 (387)
T TIGR01757       119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTN----ALIAMKNAPNIPRKNFHA  194 (387)
T ss_pred             CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHH----HHHHHHHcCCCcccEEEe
Confidence            999999999999999999999999999999999999999987 999999999999954    455667778999999999


Q ss_pred             -eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCC----CCC-CCHH--HHHHHHHHHHhhHHHHhhh
Q 025075          166 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKP----PCS-FTQE--ETEYLTNRIQNGGTEVVEA  236 (258)
Q Consensus       166 -t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~----~~~-~~~~--~~~~i~~~v~~~~~~i~~~  236 (258)
                       |.|||+|+|++||+++++++++|+ ++||||| |+++||+||++++    +.+ +++.  .+++|.++++++|++|++.
T Consensus       195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeH-Gds~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~  273 (387)
T TIGR01757       195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNH-STTQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKK  273 (387)
T ss_pred             cchhHHHHHHHHHHHHHCcChhHcceeEEEecC-CCcEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence             899999999999999999999995 9999999 7899999999974    222 2222  2689999999999999996


Q ss_pred             hCCCCchHH-HHHHHHHHhHh
Q 025075          237 KAGAGSATL-SMRLNLRMHAS  256 (258)
Q Consensus       237 k~g~~~~~~-s~a~a~~~~~~  256 (258)
                      |   |+++| ++|.++++++.
T Consensus       274 K---G~t~~~s~a~ai~~~i~  291 (387)
T TIGR01757       274 W---GRSSAASTAVSIADAIK  291 (387)
T ss_pred             c---CchhHHHHHHHHHHHHH
Confidence            5   44555 99999998875

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>cd00704 MDH Malate dehydrogenase

Probab=100.00  E-value=5.3e-50  Score=361.06  Aligned_cols=226  Identities=30%  Similarity=0.435  Sum_probs=194.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC--C--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN--T--PGVTADISHMDTG--AVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~--~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~a   89 (258)
                      .||+||||+|+||+++++.|..+++++     +|+|+|+++  +  +++++||.|..++  ..... .  .+.+++++||
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i-~--~~~~~~~~~a   77 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI-T--TDPEEAFKDV   77 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE-e--cChHHHhCCC
Confidence            389999988999999999999999988     599999987  4  7899999998632  12222 1  2346899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCC-CCCCcEEEEee
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTM  167 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~-~~~~kviG~t~  167 (258)
                      |+||++||.|++||++|+|++..|+++++++++.|++++ |++++|++|||+|+    +++++++.++ +|++||||+|.
T Consensus        78 DiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~----~t~~~~k~sg~~p~~~vig~t~  153 (323)
T cd00704          78 DVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANT----NALIALKNAPNLPPKNFTALTR  153 (323)
T ss_pred             CEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCHHHEEEeeH
Confidence            999999999999999999999999999999999999996 99999999999995    4555677778 59999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC----C-----CCHH-HHHHHHHHHHhhHHHHhhh
Q 025075          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC----S-----FTQE-ETEYLTNRIQNGGTEVVEA  236 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~----~-----~~~~-~~~~i~~~v~~~~~~i~~~  236 (258)
                      |||+|||++||++++++|++|+ ++||||| |++++|+||++++..    .     ++++ ..++|.++++++|++|+++
T Consensus       154 LDs~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~  232 (323)
T cd00704         154 LDHNRAKAQVARKLGVRVSDVKNVIIWGNH-SNTQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKK  232 (323)
T ss_pred             HHHHHHHHHHHHHhCcCHHHceeeeEEecc-cCceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhc
Confidence            9999999999999999999995 6899999 679999999997421    1     3332 3678999999999999997


Q ss_pred             hCCCCchHHH-HHHHHHHhHhc
Q 025075          237 KAGAGSATLS-MRLNLRMHASV  257 (258)
Q Consensus       237 k~g~~~~~~s-~a~a~~~~~~~  257 (258)
                      |   |+++|+ +|.++++++++
T Consensus       233 k---g~t~~~~~a~a~~~iv~a  251 (323)
T cd00704         233 R---GASSAASAAKAIADHVKD  251 (323)
T ss_pred             c---CcchhHHHHHHHHHHHHH
Confidence            5   567775 69999999874

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=100.00  E-value=8.5e-50  Score=369.97  Aligned_cols=229  Identities=24%  Similarity=0.285  Sum_probs=196.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENA   85 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-------~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a   85 (258)
                      ..++.||+||||+|+||+++++.|+.+       +++.||+|+|++++  +|+++||.|+.++.  .+..  .+.| +++
T Consensus        97 ~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i--~~~~-ye~  173 (444)
T PLN00112         97 WKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI--GIDP-YEV  173 (444)
T ss_pred             CCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE--ecCC-HHH
Confidence            345689999998899999999999988       77779999999886  89999999987422  2322  2334 589


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh-hCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~-~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      ++|||+||+++|.|++||++|+|++..|++|++++++.|++ ++|++++|++|||+|+    +++++++.++++|+|+||
T Consensus       174 ~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv----~t~v~~k~sg~~~~rViG  249 (444)
T PLN00112        174 FQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNT----NALICLKNAPNIPAKNFH  249 (444)
T ss_pred             hCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHH----HHHHHHHHcCCCCcceEE
Confidence            99999999999999999999999999999999999999999 5999999999999995    455567777899999999


Q ss_pred             E-eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC----CC-CCHHH--HHHHHHHHHhhHHHHhh
Q 025075          165 V-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-FTQEE--TEYLTNRIQNGGTEVVE  235 (258)
Q Consensus       165 ~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~--~~~i~~~v~~~~~~i~~  235 (258)
                      + |.|||+||+++||+++|+++++|+ ++||||| |+++||+||++++.    .+ +++.+  +++|.++++++|++|++
T Consensus       250 tgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeH-Gdsqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~  328 (444)
T PLN00112        250 ALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIK  328 (444)
T ss_pred             eeccHHHHHHHHHHHHHhCcCHHHcccceEEecC-CCceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHh
Confidence            9 899999999999999999999995 6999999 78999999999852    22 22223  68999999999999999


Q ss_pred             hhCCCCchHH-HHHHHHHHhHh
Q 025075          236 AKAGAGSATL-SMRLNLRMHAS  256 (258)
Q Consensus       236 ~k~g~~~~~~-s~a~a~~~~~~  256 (258)
                      .|   |+++| |+|.++++++.
T Consensus       329 ~k---G~t~~~s~a~ai~~~I~  347 (444)
T PLN00112        329 KW---GRSSAASTAVSIADAIK  347 (444)
T ss_pred             cc---CchhHHHHHHHHHHHHH
Confidence            65   44555 99999998875

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=100.00  E-value=1.9e-49  Score=356.02  Aligned_cols=225  Identities=27%  Similarity=0.391  Sum_probs=198.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||+ |.+|+++++.|+..|+..+|+|+|++++  ++.++||.|....  ......  ..++ +++++||+||+++
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~~-~~l~~aDIVIita   76 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGDY-SDCKDADIVVITA   76 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCCH-HHhCCCCEEEEcc
Confidence            38999998 9999999999999998889999999886  6788999887632  222322  2344 6799999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.|+++|++|+|++.+|+++++++++.|++++|++++|++|||+|    ++++++++.+++|++||||+ |.||++|+++
T Consensus        77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d----~~~~~~~~~~g~p~~~v~g~gt~LDs~R~~~  152 (306)
T cd05291          77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD----VITYVVQKLSGLPKNRVIGTGTSLDTARLRR  152 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH----HHHHHHHHHhCcCHHHEeeccchHHHHHHHH
Confidence            999999999999999999999999999999999999999999999    55666777788999999999 7999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~  245 (258)
                      ++|+++++++++|+++|||+| |++++|+||++++.    .      .+.+++++++.++++++|++|+++|   |+++|
T Consensus       153 ~la~~l~v~~~~v~~~V~G~H-g~s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~t~~  228 (306)
T cd05291         153 ALAEKLNVDPRSVHAYVLGEH-GDSQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIINGK---GATYY  228 (306)
T ss_pred             HHHHHHCCCcccceEEEEecC-CCceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHcc---CccHH
Confidence            999999999999999999999 78999999998832    1      2345668999999999999999964   78999


Q ss_pred             HHHHHHHHhHhc
Q 025075          246 SMRLNLRMHASV  257 (258)
Q Consensus       246 s~a~a~~~~~~~  257 (258)
                      ++|.++++++++
T Consensus       229 ~~a~a~~~~~~a  240 (306)
T cd05291         229 GIATALARIVKA  240 (306)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PTZ00117 malate dehydrogenase; Provisional

Probab=100.00  E-value=6.6e-49  Score=354.09  Aligned_cols=228  Identities=33%  Similarity=0.542  Sum_probs=201.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      .+||+|||| |+||+++++.++..++ .+|+|+|++++  .++++|+.|.....  ..+ +..++|++ +++|||+||++
T Consensus         5 ~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~-i~~~~d~~-~l~~ADiVVit   80 (319)
T PTZ00117          5 RKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNIN-ILGTNNYE-DIKDSDVVVIT   80 (319)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeE-EEeCCCHH-HhCCCCEEEEC
Confidence            469999998 9999999999998887 58999999885  68889999985322  222 23346765 89999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~  174 (258)
                      +|.++++|++|.|++..|.++++++++.|+++||++|+|++|||+|    ++++++++.+++|++|++|+| .||++|++
T Consensus        81 ag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d----i~t~~~~~~s~~p~~rviG~gt~lds~R~~  156 (319)
T PTZ00117         81 AGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD----CMVKVFQEKSGIPSNKICGMAGVLDSSRFR  156 (319)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHhhCCCcccEEEecchHHHHHHH
Confidence            9999999999999999999999999999999999999999999999    555667777889999999995 89999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      +++|++++++|++|+++|+||| |++++|+||++++.    .      .+++++++++.++++++|++|++++ |||+++
T Consensus       157 ~~la~~l~v~~~~v~~~viGeH-g~~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t~  234 (319)
T PTZ00117        157 CNLAEKLGVSPGDVSAVVIGGH-GDLMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSAF  234 (319)
T ss_pred             HHHHHHhCCCcccceEEEeecC-CCcEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCChH
Confidence            9999999999999999999999 79999999999742    1      2566678999999999999999986 789999


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      ||+|.++++++++
T Consensus       235 ~~~a~a~~~~~~a  247 (319)
T PTZ00117        235 FAPAAAIVAMIEA  247 (319)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999864

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=100.00  E-value=1.5e-49  Score=358.03  Aligned_cols=228  Identities=22%  Similarity=0.333  Sum_probs=197.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCC--CeEEEEeCCCchHhhhC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALT   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~   87 (258)
                      +|+||+||||+|+||+++++.|..+++++     ||+|+|+++    .+|+++||.|+.++  ..+...  +.+ +++++
T Consensus         1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~   77 (322)
T cd01338           1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK   77 (322)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence            46799999988999999999999999999     999999954    37899999998732  233332  334 58999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~  165 (258)
                      |||+||+|||.|++||++|+|++..|++++++++++|++++ |++++|++|||+|+||    +++++.+ ++|++||+|+
T Consensus        78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t----~~~~k~sg~~p~~~ViG~  153 (322)
T cd01338          78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNA----LIAMKNAPDIPPDNFTAM  153 (322)
T ss_pred             CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHH----HHHHHHcCCCChHheEEe
Confidence            99999999999999999999999999999999999999999 5999999999999554    4555666 5999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCC----CC-CCHH--HHHHHHHHHHhhHHHHhhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPP----CS-FTQE--ETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~----~~-~~~~--~~~~i~~~v~~~~~~i~~~k  237 (258)
                      |.||++||++.+|+++|+++++|++ +|||+| |++++|+||++++.    .+ +.+.  ++++|.++++++|++|+++|
T Consensus       154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeH-G~s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k  232 (322)
T cd01338         154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNH-SPTQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKAR  232 (322)
T ss_pred             hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCC-cccEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhCc
Confidence            9999999999999999999999998 569999 68999999998742    22 3443  36899999999999999965


Q ss_pred             CCCCchHHHHH-HHHHHhHhc
Q 025075          238 AGAGSATLSMR-LNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a-~a~~~~~~~  257 (258)
                         |+++|+++ .++++++++
T Consensus       233 ---G~t~~~~~a~a~~~iv~a  250 (322)
T cd01338         233 ---GASSAASAANAAIDHMRD  250 (322)
T ss_pred             ---CCccHHHHHHHHHHHHHH
Confidence               67899999 599999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.3e-49  Score=354.92  Aligned_cols=228  Identities=30%  Similarity=0.490  Sum_probs=199.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeE-EEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVV-RGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v-~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||+ |.||+.+|+.++.+|+. +|+|+|+++.  +++++|+.|....... ..+..++|++ ++++||+||+|+|
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~-~~~~aDiVIitag   78 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYA-DTANSDIVVITAG   78 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHH-HhCCCCEEEEcCC
Confidence            59999998 99999999999998887 7999999875  5677888876531111 1122356764 5999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~~~  176 (258)
                      .|+++|++|+|++..|++++++++++|.+++|++++|++|||+|    ++++++++.+|+|++||||+| .|||+|++++
T Consensus        79 ~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~d----i~t~~~~~~sg~~~~rviG~g~~lds~R~~~~  154 (305)
T TIGR01763        79 LPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLD----AMTYVAWQKSGFPKERVIGQAGVLDSARFRTF  154 (305)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHEEEeccchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    566677788889999999995 8999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL  251 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~  251 (258)
                      +|+++++++++|+++||||| ||+++|+||++++.    .+ ++++++++|.++++++|++|+++| |||+++|++|.++
T Consensus       155 la~~l~v~~~~v~~~v~GeH-g~s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a~~~  232 (305)
T TIGR01763       155 IAMELGVSVQDVTACVLGGH-GDAMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPAASV  232 (305)
T ss_pred             HHHHhCcCHHHeeeeEEecC-CCcEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHH
Confidence            99999999999999999999 89999999998742    22 345568999999999999999987 7899999999999


Q ss_pred             HHhHhc
Q 025075          252 RMHASV  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      ++++++
T Consensus       233 ~~i~~a  238 (305)
T TIGR01763       233 VEMVEA  238 (305)
T ss_pred             HHHHHH
Confidence            999874

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=100.00  E-value=2.5e-49  Score=354.16  Aligned_cols=224  Identities=31%  Similarity=0.451  Sum_probs=198.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |+|||+ |.||+++++.|+..++++||+|+|++++  .++++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence            689998 9999999999999999999999999885  7899999998753 2223222 345 46999999999999999


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHH
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA  178 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la  178 (258)
                      +++|++|+|++.+|+++++++++.|+++||++++|++|||+|    ++++++++.+++|++||+|+ |.|||+|+++++|
T Consensus        78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d----~~~~~~~~~sg~~~~kviG~gt~lDs~r~~~~la  153 (300)
T cd00300          78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVD----ILTYVAQKLSGLPKNRVIGSGTLLDSARFRSLLA  153 (300)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHH----HHHHHHHHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999    56667778888999999999 7999999999999


Q ss_pred             HHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC---CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHH
Q 025075          179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL  251 (258)
Q Consensus       179 ~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~---~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~  251 (258)
                      +++++++++|+++|+||| |++++|+||++++.    .+   .+++++++|.++++++|++|+++|   |+++|++|.++
T Consensus       154 ~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~k---g~t~~~~a~a~  229 (300)
T cd00300         154 EKLDVDPQSVHAYVLGEH-GDSQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRLK---GATNYGIATAI  229 (300)
T ss_pred             HHhCCCcccEEEEEEecc-CCceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHcc---CcchHHHHHHH
Confidence            999999999999999999 78999999999842    22   134568999999999999999964   78999999999


Q ss_pred             HHhHhc
Q 025075          252 RMHASV  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      ++++++
T Consensus       230 ~~~~~a  235 (300)
T cd00300         230 ADIVKS  235 (300)
T ss_pred             HHHHHH
Confidence            999874

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-48  Score=352.51  Aligned_cols=228  Identities=35%  Similarity=0.618  Sum_probs=201.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ++||+|||| |.||+++++.++..++. +|+|+|++++  +++++|+.|...  ....+. ..++|+ ++++|||+||++
T Consensus         6 ~~KI~IIGa-G~vG~~ia~~la~~gl~-~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I-~~~~d~-~~l~~aDiVI~t   81 (321)
T PTZ00082          6 RRKISLIGS-GNIGGVMAYLIVLKNLG-DVVLFDIVKNIPQGKALDISHSNVIAGSNSKV-IGTNNY-EDIAGSDVVIVT   81 (321)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCCchhhHHHHHHHhhhhccCCCeEE-EECCCH-HHhCCCCEEEEC
Confidence            369999998 99999999999999984 6999999886  678899998752  122232 234676 689999999999


Q ss_pred             CCCCCCCCC-----chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-ecc
Q 025075           96 AGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLD  169 (258)
Q Consensus        96 ag~~~~~g~-----~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~ld  169 (258)
                      +|.|+++|+     +|.+++..|+++++++++.|++++|++++|++|||+|    ++++++++.+++|++||+|+| .||
T Consensus        82 ag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d----i~t~~~~~~sg~p~~rviGlgt~ld  157 (321)
T PTZ00082         82 AGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD----VMVKLLQEHSGLPKNKVCGMAGVLD  157 (321)
T ss_pred             CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHhcCCChhhEEEecCccc
Confidence            999999999     9999999999999999999999999999999999999    555667778889999999995 999


Q ss_pred             HHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C-----C-CCHHHHHHHHHHHHhhHHHHhhhhCC
Q 025075          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C-----S-FTQEETEYLTNRIQNGGTEVVEAKAG  239 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~-----~-~~~~~~~~i~~~v~~~~~~i~~~k~g  239 (258)
                      ++|+++++|+++++++++|+++|+||| |+++||+||++++.    .     . ++++++++|.++++++|++|+++| |
T Consensus       158 s~R~~~~la~~l~v~~~~v~~~viGeH-g~s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~-g  235 (321)
T PTZ00082        158 SSRLRTYIAEKLGVNPRDVHASVIGAH-GDKMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL-G  235 (321)
T ss_pred             HHHHHHHHHHHhCCCcccceeeEEecC-CCceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-C
Confidence            999999999999999999999999999 88999999999742    1     1 456678999999999999999987 7


Q ss_pred             CCchHHHHHHHHHHhHhc
Q 025075          240 AGSATLSMRLNLRMHASV  257 (258)
Q Consensus       240 ~~~~~~s~a~a~~~~~~~  257 (258)
                      ||+++||+|.++++++++
T Consensus       236 kg~t~~~ia~a~~~i~~a  253 (321)
T PTZ00082        236 TGSAYFAPAAAAIEMAEA  253 (321)
T ss_pred             CCccHHHHHHHHHHHHHH
Confidence            899999999999999874

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=100.00  E-value=2.3e-48  Score=350.53  Aligned_cols=228  Identities=26%  Similarity=0.346  Sum_probs=195.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      ||+||||+|+||+++++.|..+++++     +|+|+|+++.    +++++||.|+.++.... +..+++.+++++|||+|
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~-~~~~~~~~~~~~~aDiV   79 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDG-VVPTHDPAVAFTDVDVA   79 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCc-eeccCChHHHhCCCCEE
Confidence            69999988999999999999988885     7999999653    68899999997432211 22233546899999999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccH
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  170 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds  170 (258)
                      |++||.|++++++|++++..|++++++++++|.+++ |++++|++|||+|+    +++++++.++++|+++||+ |.|||
T Consensus        80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv----~t~v~~~~sg~~~~~vig~gt~LDs  155 (324)
T TIGR01758        80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANT----NALVLSNYAPSIPPKNFSALTRLDH  155 (324)
T ss_pred             EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHH----HHHHHHHHcCCCCcceEEEeeehHH
Confidence            999999999999999999999999999999999995 99999999999994    5556667776777789999 89999


Q ss_pred             HHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC-C----CC----CHHH--HHHHHHHHHhhHHHHhhhhC
Q 025075          171 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----SF----TQEE--TEYLTNRIQNGGTEVVEAKA  238 (258)
Q Consensus       171 ~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~-~----~~----~~~~--~~~i~~~v~~~~~~i~~~k~  238 (258)
                      +|||++||++++++|++|+ ++||||| |+++||+||++++. .    ++    ++++  +++|.++++++|++|+++| 
T Consensus       156 ~R~r~~la~~l~v~~~~V~~~~V~GeH-G~s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k-  233 (324)
T TIGR01758       156 NRALAQVAERAGVPVSDVKNVIIWGNH-SSTQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR-  233 (324)
T ss_pred             HHHHHHHHHHhCCChhhceEeEEEECC-CCCcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence            9999999999999999996 6999999 78999999999765 2    22    2222  5789999999999999976 


Q ss_pred             CCCchHHHHHHHHHHhHhc
Q 025075          239 GAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       239 g~~~~~~s~a~a~~~~~~~  257 (258)
                       +++++|++|.++++++++
T Consensus       234 -~~~t~~~ia~~~~~i~~a  251 (324)
T TIGR01758       234 -KLSSALSAAKAAVDQMHD  251 (324)
T ss_pred             -CCCHHHHHHHHHHHHHHH
Confidence             358999999999999873

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=100.00  E-value=1.8e-47  Score=343.32  Aligned_cols=225  Identities=31%  Similarity=0.474  Sum_probs=198.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||+ |.||+++++.|+..|++++|+|+|++++  +++++|+.|.... ......  ++|+ +++++||+||+++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d~-~~l~~aDiViita~   76 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGDY-ADCKGADVVVITAG   76 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCCH-HHhCCCCEEEEccC
Confidence            59999998 9999999999999998889999999885  6789999988632 223322  3455 68999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~  176 (258)
                      .+++++++|.+++..|+++++++++.|++++|+++++++|||+|    ++++++++.+++|++||||+ |.|||+|++++
T Consensus        77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d----~~~~~~~~~sg~p~~~viG~gt~LDs~R~~~~  152 (308)
T cd05292          77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVD----VLTYVAYKLSGLPPNRVIGSGTVLDTARFRYL  152 (308)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHHCcCHHHeecccchhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    45556667778999999999 89999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C--------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C--------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~--------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      +|+++++++++|+++|+||| |++++|+||++++.    .        .++++++++|.++++++|++|+++|   |+++
T Consensus       153 la~~~~v~~~~v~~~viGeH-g~~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~  228 (308)
T cd05292         153 LGEHLGVDPRSVHAYIIGEH-GDSEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY  228 (308)
T ss_pred             HHHHhCCCccceeceeeccC-CCcEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence            99999999999999999999 79999999998732    1        2344568999999999999999965   6899


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      |++|.++++++++
T Consensus       229 ~~~a~a~~~i~~a  241 (308)
T cd05292         229 YAIGLALARIVEA  241 (308)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=100.00  E-value=3.2e-47  Score=343.55  Aligned_cols=230  Identities=24%  Similarity=0.349  Sum_probs=194.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----ChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~----~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +|.||+||||+|+||+++++.|..+++++     +|+|+|+++    .+++++|+.|+.++..-.. ..+.+++++++||
T Consensus         1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~-~~~~~~~~~l~~a   79 (325)
T cd01336           1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSV-VATTDPEEAFKDV   79 (325)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCc-eecCCHHHHhCCC
Confidence            36799999999999999999999988875     999999965    2677889999763211111 1235667899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHh-CCCCCCcEEEE-e
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV-T  166 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~-~~~~~~kviG~-t  166 (258)
                      |+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+|+    +++++. +++|+++ ||+ |
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t----~~~~k~~~~~~~~~-ig~gt  154 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNA----LILLKYAPSIPKEN-FTALT  154 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHH----HHHHHHcCCCCHHH-EEeee
Confidence            999999999999999999999999999999999999997 7999999999999544    455566 5777777 777 8


Q ss_pred             eccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCC----C-C----CCHH--HHHHHHHHHHhhHHHHh
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPP----C-S----FTQE--ETEYLTNRIQNGGTEVV  234 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~----~-~----~~~~--~~~~i~~~v~~~~~~i~  234 (258)
                      .|||+|+++++|+++++++++|+. +||||| |++++|+||++++.    . +    ++++  ++++|.++++++|++|+
T Consensus       155 ~LDs~R~r~~la~~l~v~~~~v~~~~V~GeH-G~s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii  233 (325)
T cd01336         155 RLDHNRAKSQIALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAAVI  233 (325)
T ss_pred             hHHHHHHHHHHHHHhCcChhhceEeEEEEcC-CCCeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHHHH
Confidence            999999999999999999999975 599999 67999999999764    2 1    2222  26899999999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHhHhc
Q 025075          235 EAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       235 ~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      ++|  +|+++||+|.++++++++
T Consensus       234 ~~~--~g~t~~~~a~~~~~i~~a  254 (325)
T cd01336         234 KAR--KLSSAMSAAKAICDHVHD  254 (325)
T ss_pred             Hcc--ccchHHHHHHHHHHHHHH
Confidence            975  478999999999999874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=100.00  E-value=3e-46  Score=335.47  Aligned_cols=227  Identities=27%  Similarity=0.457  Sum_probs=197.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~--~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      |||+|+||+|.+|+++++.|+..|+.++|+|+|+++  +  ++.++|+.|....  ...+ +..+.|+ +++++||+||+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~-i~~~~d~-~~l~~aDiVii   78 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAE-IKISSDL-SDVAGSDIVII   78 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcE-EEECCCH-HHhCCCCEEEE
Confidence            699999988999999999999999988999999965  3  6788899887432  1222 2334564 67999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      ++|.|+++|++|.|++..|+++++++++.|.+++|++++|+++||+|.    +++++++.+++|++|+||+ |.|||+|+
T Consensus        79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~----~t~~~~~~~g~~~~~viG~gt~LDs~R~  154 (309)
T cd05294          79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDV----MTYKALKESGFDKNRVFGLGTHLDSLRF  154 (309)
T ss_pred             ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHH----HHHHHHHhcCCCHHHEeeccchHHHHHH
Confidence            999999999999999999999999999999999999999999999995    4555667778999999999 69999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C---CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHH
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S---FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  246 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~---~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s  246 (258)
                      +++||+++++++++|+++|+||| ||+++|+||++++..    +   ..+.++++|.++++++|++|+++|   |+++||
T Consensus       155 ~~~la~~l~v~~~~v~~~viGeH-g~s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~  230 (309)
T cd05294         155 KVAIAKHFNVHISEVHTRIIGEH-GDSMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG  230 (309)
T ss_pred             HHHHHHHHCcChHHeEEEEEecC-CCceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence            99999999999999999999999 789999999998421    1   224557899999999999999976   567899


Q ss_pred             HHHHHHHhHhc
Q 025075          247 MRLNLRMHASV  257 (258)
Q Consensus       247 ~a~a~~~~~~~  257 (258)
                      +|.++++++++
T Consensus       231 ~a~~~~~ii~a  241 (309)
T cd05294         231 PASAISNLVRT  241 (309)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK06223 malate dehydrogenase; Reviewed

Probab=100.00  E-value=1.4e-45  Score=331.03  Aligned_cols=228  Identities=34%  Similarity=0.573  Sum_probs=198.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      |+||+|||| |.||+++++.++..++. +|+|+|++++  ++..+|+.|.....  ..+ +..++|+ +++++||+||++
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~-i~~~~d~-~~~~~aDiVii~   77 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTK-ITGTNDY-EDIAGSDVVVIT   77 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcE-EEeCCCH-HHHCCCCEEEEC
Confidence            579999998 99999999999998887 9999999885  67788888764321  122 2234566 679999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|+++|++|.|++.+|+++++++++.|++++|++++|++|||+|    ++++++++.+++||+|+||+ |.|||+|++
T Consensus        78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d----~~~~~~~~~s~~~~~~viG~gt~lds~r~~  153 (307)
T PRK06223         78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVD----AMTYVALKESGFPKNRVIGMAGVLDSARFR  153 (307)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCcccEEEeCCCcHHHHHH
Confidence            9999999999999999999999999999999999999999999999    55556677778999999999 599999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHH
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL  249 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~  249 (258)
                      ++||+++++++++|+++|+|+| |++++|+||++++.    .+ ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus       154 ~~la~~l~v~~~~v~~~viGeh-g~s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~  231 (307)
T PRK06223        154 TFIAEELNVSVKDVTAFVLGGH-GDSMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA  231 (307)
T ss_pred             HHHHHHhCcChhhCcccEEcCC-CCcceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence            9999999999999999999999 78999999999742    22 455568999999999999999985 57889999999


Q ss_pred             HHHHhHhc
Q 025075          250 NLRMHASV  257 (258)
Q Consensus       250 a~~~~~~~  257 (258)
                      ++++++++
T Consensus       232 ~~~~ii~a  239 (307)
T PRK06223        232 SIAEMVEA  239 (307)
T ss_pred             HHHHHHHH
Confidence            99998763

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=100.00  E-value=1.3e-45  Score=330.25  Aligned_cols=224  Identities=36%  Similarity=0.591  Sum_probs=196.7

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |+|||| |.||+.+++.|+..++. +|+|+|++++  +++.+|+.|....  ...+ +..++|+ ++++|||+||+++|.
T Consensus         1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~-I~~t~d~-~~l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTK-VTGTNDY-EDIAGSDVVVITAGI   76 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeE-EEEcCCH-HHhCCCCEEEEecCC
Confidence            689998 99999999999998887 9999999986  5677888876421  1222 2234564 679999999999999


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHHHHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV  177 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~~~l  177 (258)
                      |+++|++|.+++.+|++++++++++|++++|++++|++|||+|    ++++++++.+++||+|++|+| .||++|+++++
T Consensus        77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~d----i~t~~~~~~s~~~~~rviGlgt~lds~r~~~~l  152 (300)
T cd01339          77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLD----VMTYVAYKASGFPRNRVIGMAGVLDSARFRYFI  152 (300)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCHHHEEEecchHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999    555666777789999999996 89999999999


Q ss_pred             HHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHH
Q 025075          178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLR  252 (258)
Q Consensus       178 a~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~  252 (258)
                      |++|++++++|+++|+|+| |++++|+||++++.    .+ ++++++++|.++++++|++|++.| |+|+++|++|.+++
T Consensus       153 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~  230 (300)
T cd01339         153 AEELGVSVKDVQAMVLGGH-GDTMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA  230 (300)
T ss_pred             HHHhCCCccceEEEEEeCC-CCcceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence            9999999999999999999 88999999999853    12 345568999999999999999988 78999999999999


Q ss_pred             HhHh
Q 025075          253 MHAS  256 (258)
Q Consensus       253 ~~~~  256 (258)
                      ++++
T Consensus       231 ~i~~  234 (300)
T cd01339         231 EMVE  234 (300)
T ss_pred             HHHH
Confidence            9986

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PLN00135 malate dehydrogenase

Probab=100.00  E-value=5.1e-45  Score=326.10  Aligned_cols=202  Identities=24%  Similarity=0.372  Sum_probs=174.0

Q ss_pred             EEEEEeCCC--C--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHH
Q 025075           48 VLHLYDVVN--T--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG  123 (258)
Q Consensus        48 ei~L~D~~~--~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~  123 (258)
                      .|+|+|+++  +  +|+++||.|+.++..-... .++|.+++++|||+||++||.|++||++|+|++..|+++++++++.
T Consensus        15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~-~~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~~~   93 (309)
T PLN00135         15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVV-ATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASA   93 (309)
T ss_pred             EEEEecCcccccchhhHHHHHHhhhHHhcCCcE-ecCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            899999988  5  7899999998732111111 2345468999999999999999999999999999999999999999


Q ss_pred             hhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHHHHHHhCCCCCce-eEEEEecCCCCc
Q 025075          124 IAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVT  200 (258)
Q Consensus       124 i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v-~~~v~G~h~g~~  200 (258)
                      |.++ +|++++|++|||+|+    +++++++.+++|++|+||+ |.|||+|||++||+++++++++| +++||||| |++
T Consensus        94 i~~~~~p~aivivvsNPvDv----~t~~~~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeH-G~s  168 (309)
T PLN00135         94 LEKHAAPDCKVLVVANPANT----NALILKEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNH-SST  168 (309)
T ss_pred             HHHhcCCCeEEEEeCCcHHH----HHHHHHHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcC-CCc
Confidence            9996 899999999999995    5555667778999999999 89999999999999999999999 68999999 679


Q ss_pred             eeeccCCCCC----CC----C-CCHHH--HHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          201 ILPLLSQVKP----PC----S-FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       201 ~vp~~S~~~~----~~----~-~~~~~--~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +||+||++++    ..    + +.+++  .++|.++++++|++|+++|  ||+++||+|.++++++++
T Consensus       169 ~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~a  234 (309)
T PLN00135        169 QYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIRD  234 (309)
T ss_pred             eeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHHH
Confidence            9999999986    21    2 23333  6889999999999999974  579999999999999874

>cd05295 MDH_like Malate dehydrogenase-like

Probab=100.00  E-value=2.5e-44  Score=333.40  Aligned_cols=226  Identities=15%  Similarity=0.139  Sum_probs=190.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCC--CC--hhHHHHHhcCCCCC--eEEEEeCCCchHhhh
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV--NT--PGVTADISHMDTGA--VVRGFLGQPQLENAL   86 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~--~~--~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~   86 (258)
                      .++.+|+|+||+|++|+++.+.++...+++     .|+|+|+.  ..  +|+++||.|+.++.  .+...   ++.++++
T Consensus       121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~---~~~~ea~  197 (452)
T cd05295         121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT---TDLDVAF  197 (452)
T ss_pred             CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE---ECCHHHh
Confidence            345799999999999999999999866554     69999994  33  79999999997431  23332   2336899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC--CcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEE
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL  163 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p--~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kvi  163 (258)
                      +|||+||+++|.|+++|++|.|++..|++|++++++.|.+++|  ++++|++|||+|+||++    +++.+ ++|++||+
T Consensus       198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i----~~k~apgiP~~rVi  273 (452)
T cd05295         198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSI----LIKYAPSIPRKNII  273 (452)
T ss_pred             CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHH----HHHHcCCCCHHHEE
Confidence            9999999999999999999999999999999999999999999  89999999999966654    44454 89999999


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC-------------C----CCHHH--HHHHH
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT  223 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~-------------~----~~~~~--~~~i~  223 (258)
                      |++.|||+|++++||+++|+++++|+ ++||||| |+++||+||++++..             +    +.+++  .+++.
T Consensus       274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeH-G~sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~  352 (452)
T cd05295         274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNI-GGNTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV  352 (452)
T ss_pred             EecchHHHHHHHHHHHHhCcCHHHceeeEEEEcc-CCceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence            99878899999999999999999995 7999999 789999999997521             1    22323  46788


Q ss_pred             HHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          224 NRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       224 ~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +.++++++   +   +|++++||+|.|+++++++
T Consensus       353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~a  380 (452)
T cd05295         353 ATLKSLSS---S---LNHEAAISPAHAIATTLSY  380 (452)
T ss_pred             HHHHHHHH---h---ccCChHHHHHHHHHHHHHH
Confidence            88999998   3   4689999999999999863

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01756 LDH_protist lactate dehydrogenase

Probab=100.00  E-value=7.4e-43  Score=312.90  Aligned_cols=199  Identities=21%  Similarity=0.267  Sum_probs=169.8

Q ss_pred             EEEEEeCCC--C--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHH
Q 025075           48 VLHLYDVVN--T--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCE  122 (258)
Q Consensus        48 ei~L~D~~~--~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~  122 (258)
                      .|+|+|+++  .  +|+++||.|+.++ ......  ++|++++++|||+||++||.|++||++|+|++..|+++++++++
T Consensus        17 ~l~L~D~~~~~~~a~g~a~Dl~d~~~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~I~~~i~~   94 (313)
T TIGR01756        17 CLHLLEIPPALNRLEALAMELEDCAFPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTPIFKATGE   94 (313)
T ss_pred             EEEEecCCCccchhHhHHHHHHHhccccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence            899999987  4  7899999999732 122222  45777899999999999999999999999999999999999999


Q ss_pred             HhhhhCCC-cEEEEecCCCCCcHHHHHHHH-HHhCCCCCCcEEEE-eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCC
Q 025075          123 GIAKCCPN-ATVNLISNPVNSTVPIAAEVF-KKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAG  198 (258)
Q Consensus       123 ~i~~~~p~-a~viv~tNPvd~~~~i~t~~~-~~~~~~~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g  198 (258)
                      +|++++|+ +++|++|||+|+||    +++ ++.+++|++ +||+ |.|||+||+++||++++++|++|+. +||||| |
T Consensus        95 ~i~~~a~~~~ivivvtNPvDv~t----~v~~~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V~GeH-G  168 (313)
T TIGR01756        95 ALSEYAKPTVKVLVIGNPVNTNC----LVAMLHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVVWGNH-A  168 (313)
T ss_pred             HHHhhCCCCeEEEEeCCchHHHH----HHHHHHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEEEECC-C
Confidence            99999965 88999999999555    455 578889999 9999 8999999999999999999999975 599999 7


Q ss_pred             CceeeccCCCCC--CC-C------CCHH-HHHHHHHHHHhhHHHHhhhhCCCCchHHHHH-HHHHHhHhc
Q 025075          199 VTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMR-LNLRMHASV  257 (258)
Q Consensus       199 ~~~vp~~S~~~~--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a-~a~~~~~~~  257 (258)
                      +++||+||++++  .. +      ++++ .+++|.++++++|++|+++|   |+|+|+++ .++++++++
T Consensus       169 ~s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k---g~t~~~~~a~ai~~iv~a  235 (313)
T TIGR01756       169 ESMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEMR---GFTSAASPVKASLQHMKA  235 (313)
T ss_pred             CceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhCc---CCcchHHHHHHHHHHHHH
Confidence            899999999976  21 1      2332 47899999999999999964   68999988 599998864

This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=100.00  E-value=1.7e-40  Score=292.09  Aligned_cols=181  Identities=35%  Similarity=0.529  Sum_probs=162.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCC--hhHHHHHhcCCCCC-eEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNT--PGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~--~~~ei~L~D~~~~--~g~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||||+|.+|+++++.|+..+  ...+|+|+|++++  ++.++|+.|..... ..+ +..++|++++++|||+||+++|
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~-i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIK-VSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcE-EEECCchHHHhCCCCEEEECCC
Confidence            6899987999999999999988  7789999999885  67889998886432 223 2346788899999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV  177 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~l  177 (258)
                      .++++|++|.+++.+|++++++++++++++||++|+|++|||+|    ++++++++.+++|++|+||+|.+|++|+++++
T Consensus        80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d----~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~l  155 (263)
T cd00650          80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVD----IITYLVWRYSGLPKEKVIGLGTLDPIRFRRIL  155 (263)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHHHHHHhCCCchhEEEeecchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999    55666777778999999999669999999999


Q ss_pred             HHHhCCCCCceeEEEEecCCCCceeeccCCCC
Q 025075          178 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK  209 (258)
Q Consensus       178 a~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~  209 (258)
                      |+++++++++|+++|||+| |++++|+||+++
T Consensus       156 a~~l~v~~~~v~~~v~G~h-g~~~~~~~s~~~  186 (263)
T cd00650         156 AEKLGVDPDDVKVYILGEH-GGSQVPDWSTVR  186 (263)
T ss_pred             HHHhCCCccceEEEEEEcC-CCceEeccccch
Confidence            9999999999999999999 678999999875

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.4e-35  Score=245.38  Aligned_cols=231  Identities=26%  Similarity=0.385  Sum_probs=198.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++.+|.|.||+|++|+++.+.++..-.++     .++|+|+.+.    .|..++|+|+.++ .++.+..++|..++++|.
T Consensus         3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a~P-lL~~Vvattd~~~afkdv   81 (332)
T KOG1496|consen    3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCALP-LLKGVVATTDEVEAFKDV   81 (332)
T ss_pred             CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhhhh-HHHhhhcccChhhhhccC
Confidence            45789999999999999999987633221     7899999774    6889999999876 344344577888999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeec
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~l  168 (258)
                      |+.|+..+.||++||+|.|++..|++|+++.+..+++|+ |++.++++.||+++++.++.   +.+..+|.+++-.+|.|
T Consensus        82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL  158 (332)
T KOG1496|consen   82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL  158 (332)
T ss_pred             cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence            999999999999999999999999999999999999997 89999999999999997765   45567999999999999


Q ss_pred             cHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCCC---------CCCHHHH--HHHHHHHHhhHHHHhhh
Q 025075          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA  236 (258)
Q Consensus       169 ds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~~---------~~~~~~~--~~i~~~v~~~~~~i~~~  236 (258)
                      |++|+..+||.++|++..+|+ ..+||+| ..||+|+.-++++-.         .+.+..|  .++.+.|+++|..||+.
T Consensus       159 DhNRA~~QlA~klgv~~~~VkNviIWGNH-SsTQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a  237 (332)
T KOG1496|consen  159 DHNRALAQLALKLGVPVSDVKNVIIWGNH-SSTQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA  237 (332)
T ss_pred             chhhHHHHHHHhhCCchhhcceeEEeccc-ccccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence            999999999999999999997 7899999 569999999998521         1333333  58999999999999998


Q ss_pred             hCCCCchHHHHHHHHHHhHh
Q 025075          237 KAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       237 k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +  |-|+.+|.|.++.+.++
T Consensus       238 r--k~SSA~SaA~aacDhi~  255 (332)
T KOG1496|consen  238 R--KLSSAMSAAKAACDHIR  255 (332)
T ss_pred             h--hhhhhhhHHHhHhhhhh
Confidence            6  57888999999988764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=100.00  E-value=1.1e-34  Score=232.56  Aligned_cols=139  Identities=39%  Similarity=0.613  Sum_probs=123.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+||||+|.||+++++.|..+++++||+|+|+++.  +|+++||+|..+...........+ +++++|||+||+++|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence            6999999889999999999999999999999999964  899999999975443332222333 5899999999999999


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |++||++|.|++..|++++++++++|.+++|+++++++|||+|    ++++++++.+++||+|+||
T Consensus        80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd----~~t~~~~~~s~~~~~kviG  141 (141)
T PF00056_consen   80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVD----VMTYVAQKYSGFPPNKVIG  141 (141)
T ss_dssp             SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHH----HHHHHHHHHHTSSGGGEEE
T ss_pred             cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHH----HHHHHHHHhhCcCcccCcC
Confidence            9999999999999999999999999999999999999999999    6677788888899999998

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK15076 alpha-galactosidase; Provisional

Probab=99.93  E-value=4e-26  Score=213.20  Aligned_cols=163  Identities=21%  Similarity=0.285  Sum_probs=129.1

Q ss_pred             CCeEEEEcCCCchHHHHHH--HHH-hCCCCc-EEEEEeCCCCh---hHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAM--LMK-INPLVS-VLHLYDVVNTP---GVTADISHMD--TGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~--~L~-~~~~~~-ei~L~D~~~~~---g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |+||+|||| |++|.+.++  .++ ..++.+ ||+|+|+++++   +..+ +.+..  .....+. ..++|++++++|||
T Consensus         1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i-~~ttD~~eal~dAD   77 (431)
T PRK15076          1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKI-TATTDRREALQGAD   77 (431)
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEE-EEECCHHHHhCCCC
Confidence            479999998 999988877  554 345554 99999998852   2222 33221  1122332 34678889999999


Q ss_pred             EEEEcCCCC-CCCC--------------CchhhH--------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHH
Q 025075           91 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  147 (258)
Q Consensus        91 iVIi~ag~~-~~~g--------------~~r~d~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~  147 (258)
                      +||++++++ .+++              ++|.|.        +.+|+++++++++.|+++||+||+|++|||+|    ++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~d----iv  153 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMA----MN  153 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHH----HH
Confidence            999999987 4445              567787        89999999999999999999999999999999    67


Q ss_pred             HHHHHHhCCCCCCcEEEEe--eccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          148 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       148 t~~~~~~~~~~~~kviG~t--~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      |++++   ++|+.||||+|  .+|+.   +.+|+.+|+++++|++++.|=
T Consensus       154 t~~~~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~Gl  197 (431)
T PRK15076        154 TWAMN---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGI  197 (431)
T ss_pred             HHHHh---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEee
Confidence            77776   47889999997  56664   789999999999999999993

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=99.93  E-value=2.6e-25  Score=207.19  Aligned_cols=173  Identities=26%  Similarity=0.310  Sum_probs=130.2

Q ss_pred             CeEEEEcCCCchHHH--HHHHHHhCC--C-CcEEEEEeCCCChh-----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQP--LAMLMKINP--L-VSVLHLYDVVNTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~--~a~~L~~~~--~-~~ei~L~D~~~~~g-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |||+|||| |+. .+  +...|+...  + .+||+|+|+|+++-     .+..+.+.. ...++. ..|+|+++|++|||
T Consensus         1 ~KI~iIGg-GS~-~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v-~~ttD~~~Al~gAD   76 (425)
T cd05197           1 VKIAIIGG-GSS-FTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKF-EKTMDLEDAIIDAD   76 (425)
T ss_pred             CEEEEECC-chH-hHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEE-EEeCCHHHHhCCCC
Confidence            69999999 664 22  223344332  3 37999999998521     111222221 123443 34789999999999


Q ss_pred             EEEEcCCC------------CCCCCC--------chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           91 LVIIPAGV------------PRKPGM--------TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        91 iVIi~ag~------------~~~~g~--------~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      +||.+..+            |.+.|.        -......+|+++++++++.|+++||+||+|++|||+|    ++|++
T Consensus        77 fVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~d----i~t~a  152 (425)
T cd05197          77 FVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAG----EVTEA  152 (425)
T ss_pred             EEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHH----HHHHH
Confidence            99998643            223331        1233567899999999999999999999999999999    67777


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-cCCCCceeeccCCCC
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVK  209 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~h~g~~~vp~~S~~~  209 (258)
                      +++.  +|+.|+||+|.. +.|+++.+|+.+|+++++|+++|+| +| +    |+||+++
T Consensus       153 ~~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnH-g----~~~s~~~  204 (425)
T cd05197         153 VRRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNH-G----IWLNRVR  204 (425)
T ss_pred             HHHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccC-e----EeeEeEE
Confidence            7776  478999999877 8999999999999999999999999 99 4    8888876

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=99.93  E-value=4.4e-25  Score=205.28  Aligned_cols=165  Identities=22%  Similarity=0.305  Sum_probs=127.1

Q ss_pred             CeEEEEcCCCchHHHH-HHHHHhC-C-C-CcEEEEEeCC-CChh-----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQPL-AMLMKIN-P-L-VSVLHLYDVV-NTPG-----VTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~-a~~L~~~-~-~-~~ei~L~D~~-~~~g-----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |||+|||| |++-... ...|+.. . + .+||+|+|+| +++-     .+..+.... ...++. ..|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v-~~t~d~~~al~gad   77 (419)
T cd05296           1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKV-HLTTDRREALEGAD   77 (419)
T ss_pred             CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEE-EEeCCHHHHhCCCC
Confidence            69999999 7763322 2334432 2 2 4799999999 5421     111122221 113333 34689999999999


Q ss_pred             EEEEcCCCCCCCCCchhh--------------------HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           91 LVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      +||+++++++.+++++.+                    ...+|+++++++++.|+++||+||+|++|||+|    ++|++
T Consensus        78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~----ivt~a  153 (419)
T cd05296          78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG----IVTEA  153 (419)
T ss_pred             EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH----HHHHH
Confidence            999999887776665554                    267899999999999999999999999999999    77778


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-cC
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GH  196 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~h  196 (258)
                      +++.+   +.|+||+|..+ .|+++.+|+.+|+++++++++|+| +|
T Consensus       154 ~~k~~---~~rviGlc~~~-~r~~~~ia~~lg~~~~~v~~~v~GlNH  196 (419)
T cd05296         154 VLRHT---GDRVIGLCNVP-IGLQRRIAELLGVDPEDVFIDYAGLNH  196 (419)
T ss_pred             HHHhc---cCCEEeeCCcH-HHHHHHHHHHhCCCHHHceEEEEeccc
Confidence            87764   78999999774 899999999999999999999999 88

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=99.88  E-value=3e-22  Score=187.15  Aligned_cols=165  Identities=22%  Similarity=0.224  Sum_probs=127.9

Q ss_pred             CeEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~--~L~~~-~~~-~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      +||+|||| |.+|++.+.  .++.. .+. .+|+|||++++  +....++.+..  .....+. ..++|++++++|||+|
T Consensus         1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I-~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKI-EATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEE-EEeCCHHHHhcCCCEE
Confidence            58999998 999999776  34422 333 39999999985  22233333221  1112232 2467888999999999


Q ss_pred             EEcCCCCCCCCCch----------------------hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           93 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        93 Ii~ag~~~~~g~~r----------------------~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      |++++.+..++.++                      .....+|.+++.++++.++++||++|++++|||++    ++|++
T Consensus        79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~----i~t~~  154 (423)
T cd05297          79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMA----ELTWA  154 (423)
T ss_pred             EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHH----HHHHH
Confidence            99998665555444                      44567899999999999999999999999999999    77777


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      +++.++   .|++|+|.. +.++++.+|+.+++++++|+++++|-
T Consensus       155 ~~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~Gl  195 (423)
T cd05297         155 LNRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGI  195 (423)
T ss_pred             HHHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEee
Confidence            877653   799999865 78999999999999999999999993

linked to 3D####ucture

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=99.86  E-value=1.1e-20  Score=176.66  Aligned_cols=164  Identities=23%  Similarity=0.307  Sum_probs=121.3

Q ss_pred             CeEEEEcCCCchHHH--HHHHHHhC--CC-CcEEEEEeCCCCh-h----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQP--LAMLMKIN--PL-VSVLHLYDVVNTP-G----VTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~--~a~~L~~~--~~-~~ei~L~D~~~~~-g----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |||+|||| |++ .+  +...|...  .+ .++|+|+|+|+++ .    .+..+.+.. ...++. ..|+|+++|++|||
T Consensus         1 ~KI~iIGa-GS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v-~~Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGG-GST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKF-VYTTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECC-cHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEE-EEECCHHHHhCCCC
Confidence            69999999 665 22  22334433  23 3799999999852 1    112222221 123443 34789999999999


Q ss_pred             EEEEcCCC------------CCCCCC---c-----hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           91 LVIIPAGV------------PRKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        91 iVIi~ag~------------~~~~g~---~-----r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      +||.+..+            |.+.|.   +     ..-...+|+++++++++.|+++||+||+|++|||+|    ++|++
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~----~vt~~  152 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAA----IVAEA  152 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHH----HHHHH
Confidence            99998643            223332   1     233568999999999999999999999999999999    67777


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      +++.  +|+.|+||+|+-.. .++..+|+.+|++++++...+.|=
T Consensus       153 ~~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~Gl  194 (437)
T cd05298         153 LRRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGL  194 (437)
T ss_pred             HHHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEee
Confidence            7765  78899999997664 478899999999999999999993

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=99.84  E-value=4.5e-20  Score=152.95  Aligned_cols=152  Identities=24%  Similarity=0.295  Sum_probs=104.7

Q ss_pred             eEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCCCh-----hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           22 KVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNTP-----GVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~--~L~~~~-~-~~ei~L~D~~~~~-----g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      ||+|||| |++-.+...  .+...+ + .+||+|+|+|+++     ..+..+.... ...++. ..++|+++|++|||+|
T Consensus         1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v-~~ttd~~eAl~gADfV   77 (183)
T PF02056_consen    1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKV-EATTDRREALEGADFV   77 (183)
T ss_dssp             EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEE-EEESSHHHHHTTESEE
T ss_pred             CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEE-EEeCCHHHHhCCCCEE
Confidence            8999998 887777533  333322 2 2599999999852     1111122111 123332 3468999999999999


Q ss_pred             EEcCCC------------CCCCCCc----------hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           93 IIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        93 Ii~ag~------------~~~~g~~----------r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      |++..+            |.+.|..          -.-...++++.+.++++.|+++|||||++|+|||+.    +++++
T Consensus        78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~----~vt~a  153 (183)
T PF02056_consen   78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMG----IVTEA  153 (183)
T ss_dssp             EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHH----HHHHH
T ss_pred             EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHH----HHHHH
Confidence            998643            4555432          233568999999999999999999999999999999    77888


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCC
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL  183 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v  183 (258)
                      +.+.  +|..|++|+|+-. .-+...+|+.||.
T Consensus       154 ~~r~--~~~~k~vGlCh~~-~~~~~~la~~L~~  183 (183)
T PF02056_consen  154 LSRY--TPKIKVVGLCHGP-QGTRRQLAKLLGM  183 (183)
T ss_dssp             HHHH--STTSEEEEE-SHH-HHHHHHHHHHHT-
T ss_pred             HHHh--CCCCCEEEECCCH-HHHHHHHHHHhCc
Confidence            8775  5668999999765 3578889998873

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=99.83  E-value=1.4e-19  Score=166.61  Aligned_cols=168  Identities=28%  Similarity=0.360  Sum_probs=123.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCCChhH-HHH----HhcCCCCCeEEEEeCCCchHhhhCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNTPGV-TAD----ISHMDTGAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~--~L~~~~-~-~~ei~L~D~~~~~g~-~~d----l~~~~~~~~v~~~~~~~d~~~a~~~   88 (258)
                      ++++||+|||| |+++.+...  .|...+ + ..||.|+|+++.+.+ ...    +.+... ..++. ..++|+++|++|
T Consensus         1 m~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g-~~~kv-~~ttd~~eAl~g   77 (442)
T COG1486           1 MKKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAG-APVKV-EATTDRREALEG   77 (442)
T ss_pred             CCcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhC-CCeEE-EEecCHHHHhcC
Confidence            35679999999 888877532  233322 2 369999999985221 111    222211 23443 346799999999


Q ss_pred             CCEEEEcCCC------------CCCCCCch--------hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH
Q 025075           89 MDLVIIPAGV------------PRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (258)
Q Consensus        89 aDiVIi~ag~------------~~~~g~~r--------~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t  148 (258)
                      ||+|+.++.+            |.|.|--+        .-...++++++.+|++.|+++||+||++++|||+.    ++|
T Consensus        78 AdfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~----~vT  153 (442)
T COG1486          78 ADFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAA----IVT  153 (442)
T ss_pred             CCEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHH----HHH
Confidence            9999998632            44444222        22347899999999999999999999999999999    888


Q ss_pred             HHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCC-CceeEEEEec
Q 025075          149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGG  195 (258)
Q Consensus       149 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G~  195 (258)
                      ++.++.  +|.-|++|+|+..- -....+|+.|++++ ++++..+.|-
T Consensus       154 eAv~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGl  198 (442)
T COG1486         154 EAVRRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGL  198 (442)
T ss_pred             HHHHHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeec
Confidence            888886  56459999997643 46789999999975 9999999993

>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=99.82  E-value=2.1e-20  Score=154.89  Aligned_cols=89  Identities=36%  Similarity=0.530  Sum_probs=80.9

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC-----------CCCCHHHHHHHHHHHHhhHHHHh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV  234 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~-----------~~~~~~~~~~i~~~v~~~~~~i~  234 (258)
                      |.|||+|++++||+++|++|++++++||||| |+++||+||++++.           ..++++++++|.++++++|++|+
T Consensus         1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeH-g~s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii   79 (174)
T PF02866_consen    1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEH-GDSQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII   79 (174)
T ss_dssp             THHHHHHHHHHHHHHHTSGGGGEEEEEEBSS-STTEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCccceEEEEEecC-CcceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence            5799999999999999999999999999999 78999999999832           24677789999999999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHhHhc
Q 025075          235 EAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       235 ~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      ++|+  |+++||+|.|+++++++
T Consensus        80 ~~k~--g~t~~s~A~a~~~~v~a  100 (174)
T PF02866_consen   80 KAKG--GSTSYSIAAAAARIVEA  100 (174)
T ss_dssp             HHHS--SSCHHHHHHHHHHHHHH
T ss_pred             eecc--ccCcCCHHHHHHHHHHH
Confidence            9983  88999999999999864

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.04  E-value=7.1e-10  Score=92.35  Aligned_cols=117  Identities=24%  Similarity=0.354  Sum_probs=78.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---h--hHHHH-Hh---c-CCC--------CCeEEEEeCCCchH
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---P--GVTAD-IS---H-MDT--------GAVVRGFLGQPQLE   83 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~--g~~~d-l~---~-~~~--------~~~v~~~~~~~d~~   83 (258)
                      ||+|||| |.+|..++..++..|+  +|.|||.+++   .  ....+ +.   . ...        ...+.   .++|++
T Consensus         1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~---~~~dl~   74 (180)
T PF02737_consen    1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS---FTTDLE   74 (180)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE---EESSGG
T ss_pred             CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc---cccCHH
Confidence            7999998 9999999999999998  9999999874   1  11111 11   1 110        11333   346776


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ++. +||+||-+.              .+++++.+++...+++++ |++++  .||.+..   -++++.....  .|+|+
T Consensus        75 ~~~-~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl---~i~~la~~~~--~p~R~  132 (180)
T PF02737_consen   75 EAV-DADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSL---SISELAAALS--RPERF  132 (180)
T ss_dssp             GGC-TESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS----HHHHHTTSS--TGGGE
T ss_pred             HHh-hhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCC---CHHHHHhccC--cCceE
Confidence            655 999999986              345888999999999998 56665  8887764   4555555443  57789


Q ss_pred             EEEe
Q 025075          163 LGVT  166 (258)
Q Consensus       163 iG~t  166 (258)
                      +|+-
T Consensus       133 ig~H  136 (180)
T PF02737_consen  133 IGMH  136 (180)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9984

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.02  E-value=1e-09  Score=98.16  Aligned_cols=141  Identities=21%  Similarity=0.289  Sum_probs=99.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--HH----HHhcCC------CCCeEEEEeCCCchHh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TA----DISHMD------TGAVVRGFLGQPQLEN   84 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~~----dl~~~~------~~~~v~~~~~~~d~~~   84 (258)
                      .+||+|||| |.+|+.+|+.++..|+  +|+|+|++++   ++.  ..    .+....      ....+..+..++|+ .
T Consensus         3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~   78 (307)
T COG1250           3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A   78 (307)
T ss_pred             ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence            469999998 9999999999998777  9999999864   111  11    111110      01122223345565 4


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ++++||+||-++              .+|.++.+++..++.+++ |++++  .||.+..   .++++....  ..|+|++
T Consensus        79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl---~it~ia~~~--~rper~i  137 (307)
T COG1250          79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSL---SITELAEAL--KRPERFI  137 (307)
T ss_pred             HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCC---CHHHHHHHh--CCchhEE
Confidence            899999999986              567889999999999998 67776  9999876   455555544  4578899


Q ss_pred             EE-------------------eeccHHHHHHHHHHHhCCCC
Q 025075          164 GV-------------------TMLDVVRANTFVAEVLGLDP  185 (258)
Q Consensus       164 G~-------------------t~lds~R~~~~la~~l~v~~  185 (258)
                      |+                   |.-++...-..++++++..|
T Consensus       138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~  178 (307)
T COG1250         138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP  178 (307)
T ss_pred             EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence            97                   23356666677888888555

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.98  E-value=3.1e-08  Score=90.49  Aligned_cols=115  Identities=16%  Similarity=0.220  Sum_probs=83.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-------------HHhcCC-CCCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-------------DISHMD-TGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-------------dl~~~~-~~~~v~~~~~~~d~~~a~   86 (258)
                      |||+|+|. |+||...+..|++.|+  +|+++|+++.+-..+             +|.... ...++   ..|+|+++++
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl---~fTtd~~~a~   74 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRL---RFTTDYEEAV   74 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcE---EEEcCHHHHH
Confidence            79999996 9999999999999998  999999997521111             111111 11123   3578999999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHHH
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPIA  147 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i~  147 (258)
                      +++|++||+.|.|.++..      ..++..+...++.|.++.+...+++  .|=|+.+.-.+-
T Consensus        75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~  131 (414)
T COG1004          75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR  131 (414)
T ss_pred             hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence            999999999999987632      2347778888999988877634333  377888655443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.96  E-value=8.8e-09  Score=93.14  Aligned_cols=121  Identities=15%  Similarity=0.162  Sum_probs=83.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-H-------HHH-HhcCC-----CCCeEEEEeCCCchHh
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-------TAD-ISHMD-----TGAVVRGFLGQPQLEN   84 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~-------~~d-l~~~~-----~~~~v~~~~~~~d~~~   84 (258)
                      ...||+|||+ |.+|+.++..++..|+  +|++||++++.. .       .++ +....     ....+.   .++++++
T Consensus         6 ~i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~---~~~~l~~   79 (321)
T PRK07066          6 DIKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLR---FVATIEA   79 (321)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhce---ecCCHHH
Confidence            3468999998 9999999999999998  999999986411 0       111 11010     011222   3457888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      ++++||+||.++              .+|.++.+++...+.+++|... |+.||.+..   .++++....  -.|+|++|
T Consensus        80 av~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l---~~s~la~~~--~~p~R~~g  139 (321)
T PRK07066         80 CVADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGL---LPTDFYARA--THPERCVV  139 (321)
T ss_pred             HhcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCcc---CHHHHHHhc--CCcccEEE
Confidence            999999999986              3457778888899999986543 458888864   334444443  34578888


Q ss_pred             E
Q 025075          165 V  165 (258)
Q Consensus       165 ~  165 (258)
                      +
T Consensus       140 ~  140 (321)
T PRK07066        140 G  140 (321)
T ss_pred             E
Confidence            5

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=98.90  E-value=7.7e-09  Score=102.79  Aligned_cols=124  Identities=17%  Similarity=0.222  Sum_probs=86.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--HHHH-----hcCCC-----CCeEEEEeCCCc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--TADI-----SHMDT-----GAVVRGFLGQPQ   81 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~~dl-----~~~~~-----~~~v~~~~~~~d   81 (258)
                      +.+..||+|||| |.+|..+|..++..|+  +|+|+|++++   ++.  ..+.     .....     ......+..++|
T Consensus       310 ~~~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~  386 (714)
T TIGR02437       310 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLS  386 (714)
T ss_pred             ccccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCC
Confidence            334568999998 9999999999999998  9999999874   111  1111     11100     001111223456


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||-++              .+++++.+++..++++++| ++++  .||.+..   -++++....  -.|+
T Consensus       387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l---~i~~ia~~~--~~p~  444 (714)
T TIGR02437       387 Y-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTI---SISLLAKAL--KRPE  444 (714)
T ss_pred             H-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHhhc--CCcc
Confidence            6 6799999999986              3568889999999999985 5655  8998875   345555444  3478


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      |++|+
T Consensus       445 r~ig~  449 (714)
T TIGR02437       445 NFCGM  449 (714)
T ss_pred             cEEEE
Confidence            89997

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.87  E-value=1.2e-08  Score=101.63  Aligned_cols=121  Identities=15%  Similarity=0.186  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH--H---HH-H-hcCCC-----CCeEEEEeCCCchHh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV--T---AD-I-SHMDT-----GAVVRGFLGQPQLEN   84 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~--~---~d-l-~~~~~-----~~~v~~~~~~~d~~~   84 (258)
                      ..||+|||| |.+|..++..++..|+  +|+|+|++++   ++.  .   ++ + .....     ...+..+..++|+ +
T Consensus       313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~  388 (715)
T PRK11730        313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-A  388 (715)
T ss_pred             cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-H
Confidence            358999998 9999999999999998  9999999874   111  1   11 1 11110     0011112234676 6


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ++++||+||-++              .+++++.+++..++++++| ++++  .||.+..   -++++.....  .|+|++
T Consensus       389 ~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~r~~  447 (715)
T PRK11730        389 GFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTI---SISLLAKALK--RPENFC  447 (715)
T ss_pred             HhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--CCccEE
Confidence            799999999986              3568889999999999985 5544  8998875   3455555443  467899


Q ss_pred             EE
Q 025075          164 GV  165 (258)
Q Consensus       164 G~  165 (258)
                      |+
T Consensus       448 g~  449 (715)
T PRK11730        448 GM  449 (715)
T ss_pred             EE
Confidence            96

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.87  E-value=2.2e-08  Score=89.26  Aligned_cols=121  Identities=16%  Similarity=0.225  Sum_probs=79.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-H-------HHH-HhcCC-C-----CCeEEEEeCCCchHh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-V-------TAD-ISHMD-T-----GAVVRGFLGQPQLEN   84 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~-------~~d-l~~~~-~-----~~~v~~~~~~~d~~~   84 (258)
                      +.||+|||+ |.+|..+|..++..|+  +|++||++++.. .       .++ +.+.. .     ...+..+..++|+ +
T Consensus         5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~   80 (286)
T PRK07819          5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-G   80 (286)
T ss_pred             ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-H
Confidence            358999998 9999999999999998  999999987511 1       111 11110 0     0011112234677 6


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-C-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ++++||+||.++              .++.++.+++...+++++ + ++++  +||.+...   ++.... .. ..|+|+
T Consensus        81 ~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~---~~~la~-~~-~~~~r~  139 (286)
T PRK07819         81 DFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIP---IMKLAA-AT-KRPGRV  139 (286)
T ss_pred             HhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHh-hc-CCCccE
Confidence            799999999986              345777888889999996 4 5555  77776642   222222 22 335677


Q ss_pred             EEE
Q 025075          163 LGV  165 (258)
Q Consensus       163 iG~  165 (258)
                      +|+
T Consensus       140 ~g~  142 (286)
T PRK07819        140 LGL  142 (286)
T ss_pred             EEE
Confidence            776

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.86  E-value=1.4e-08  Score=90.41  Aligned_cols=119  Identities=22%  Similarity=0.347  Sum_probs=77.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHH-----HHHh--cCCC---------CCeEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVT-----ADIS--HMDT---------GAVVRGFLGQP   80 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~-----~dl~--~~~~---------~~~v~~~~~~~   80 (258)
                      .+||+|||+ |.+|..++..++..|+  +|.+||++++.   ...     .+..  ....         ...+.   .++
T Consensus         3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~   76 (287)
T PRK08293          3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT---LTT   76 (287)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE---EeC
Confidence            468999998 9999999999999887  89999998641   110     0100  0000         01222   346


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |+++++++||+||++..              .+.+..+++.+.+.++++ ++++  ++|.+..   .++++.....  .+
T Consensus        77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~sntSt~---~~~~~~~~~~--~~  135 (287)
T PRK08293         77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF--ATNSSTL---LPSQFAEATG--RP  135 (287)
T ss_pred             CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE--EECcccC---CHHHHHhhcC--Cc
Confidence            78788999999999962              235566777788888775 4543  5676653   2334444332  35


Q ss_pred             CcEEEE
Q 025075          160 KKLLGV  165 (258)
Q Consensus       160 ~kviG~  165 (258)
                      .|++|+
T Consensus       136 ~r~vg~  141 (287)
T PRK08293        136 EKFLAL  141 (287)
T ss_pred             ccEEEE
Confidence            677775

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=98.85  E-value=9.2e-09  Score=102.54  Aligned_cols=123  Identities=16%  Similarity=0.218  Sum_probs=85.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh--HHHHHh-----cCCC-----CCeEEEEeCCCch
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTADIS-----HMDT-----GAVVRGFLGQPQL   82 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g--~~~dl~-----~~~~-----~~~v~~~~~~~d~   82 (258)
                      .+..||+|||| |.+|+.++..++..|+  +|+|+|++++   ++  ...+..     ....     ......+..++|+
T Consensus       333 ~~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~  409 (737)
T TIGR02441       333 RPVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY  409 (737)
T ss_pred             CcccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH
Confidence            34468999998 9999999999999998  9999999874   11  111111     1100     0011112334676


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                       +++++||+||-++              .+|.++.+++..++++++| ++++  .||.+..   -++++.....  .|+|
T Consensus       410 -~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl---~i~~la~~~~--~p~r  467 (737)
T TIGR02441       410 -SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSAL---PIKDIAAVSS--RPEK  467 (737)
T ss_pred             -HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCC---CHHHHHhhcC--Cccc
Confidence             5799999999986              4578889999999999985 5555  8998875   3455555443  4688


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      ++|+
T Consensus       468 ~ig~  471 (737)
T TIGR02441       468 VIGM  471 (737)
T ss_pred             eEEE
Confidence            9996

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.80  E-value=1.3e-08  Score=85.21  Aligned_cols=122  Identities=20%  Similarity=0.302  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC----------------CCCeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~~~d~~~   84 (258)
                      |||+|||. |+||..+|..|+..|+  +|+.+|+|+++-  ..++...                ...++.   .++|.++
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v--~~l~~g~~p~~E~~l~~ll~~~~~~~~l~---~t~~~~~   72 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKV--EALNNGELPIYEPGLDELLKENVSAGRLR---ATTDIEE   72 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHH--HHHHTTSSSS-CTTHHHHHHHHHHTTSEE---EESEHHH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHH--HHHhhccccccccchhhhhccccccccch---hhhhhhh
Confidence            79999997 9999999999999998  999999987421  1122111                012343   2467888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEE-ecCCCCCcHHHHHHHHHHhCC
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL-ISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ++++||++|+|.+.|..++.+      -+...+.+.++.|.++. ++.++++ -|=|+.+.-.++..++.+.++
T Consensus        73 ai~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~  140 (185)
T PF03721_consen   73 AIKDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG  140 (185)
T ss_dssp             HHHH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred             hhhccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence            899999999999888765321      12444566667776664 4444444 356777555455556666553

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=98.80  E-value=3.5e-08  Score=97.98  Aligned_cols=122  Identities=16%  Similarity=0.247  Sum_probs=83.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCC---hh--HHHH-Hh----cCCC-C----CeEEEEeCCCch
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTAD-IS----HMDT-G----AVVRGFLGQPQL   82 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~---~g--~~~d-l~----~~~~-~----~~v~~~~~~~d~   82 (258)
                      +..||+|||| |.+|+.++..++ ..|+  +|+|+|++++   ++  ...+ +.    .... .    .....+..++|+
T Consensus       303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  379 (699)
T TIGR02440       303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY  379 (699)
T ss_pred             cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh
Confidence            4468999998 999999999888 4788  9999999874   11  1111 11    1100 0    001112335676


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                       ++++|||+||-++              .+++++.+++..++++++| ++++  .||.+..   .++++....  -.|+|
T Consensus       380 -~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l---~i~~la~~~--~~p~r  437 (699)
T TIGR02440       380 -RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSL---PIGQIAAAA--SRPEN  437 (699)
T ss_pred             -HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCC---CHHHHHHhc--CCccc
Confidence             5899999999986              3468889999999999985 5554  8998875   344555443  35678


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      ++|+
T Consensus       438 ~~g~  441 (699)
T TIGR02440       438 VIGL  441 (699)
T ss_pred             EEEE
Confidence            9986

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=98.78  E-value=3.2e-08  Score=98.41  Aligned_cols=122  Identities=17%  Similarity=0.268  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCC---hh--HHHHHh-----cCCC-----CCeEEEEeCCCch
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT---PG--VTADIS-----HMDT-----GAVVRGFLGQPQL   82 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~---~g--~~~dl~-----~~~~-----~~~v~~~~~~~d~   82 (258)
                      ...||+|||| |.+|..+|..++ ..|+  +|+|+|.+++   ++  ...+..     ....     ......+..++|+
T Consensus       308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~  384 (708)
T PRK11154        308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY  384 (708)
T ss_pred             cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh
Confidence            3468999998 999999999988 7788  9999999864   11  111111     1100     0011122335676


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                       +++++||+||-++              .+|.++.+++...+++++ |++++  .||.+..   .++++....  -.|+|
T Consensus       385 -~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l---~i~~la~~~--~~p~r  442 (708)
T PRK11154        385 -RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSL---PIGQIAAAA--ARPEQ  442 (708)
T ss_pred             -HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCC---CHHHHHHhc--Ccccc
Confidence             6899999999986              457889999999999998 56655  8998875   345555444  24678


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      ++|+
T Consensus       443 ~ig~  446 (708)
T PRK11154        443 VIGL  446 (708)
T ss_pred             eEEE
Confidence            9887

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.73  E-value=5.7e-08  Score=86.25  Aligned_cols=118  Identities=19%  Similarity=0.318  Sum_probs=75.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--------H-HHHhcCC-C--------CCeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--------T-ADISHMD-T--------GAVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--------~-~dl~~~~-~--------~~~v~~~~~~~d   81 (258)
                      +.||+|||+ |.+|..++..++..|+  +|+++|++++...        . .++.... .        ...+.   .++|
T Consensus         3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~---~~~~   76 (282)
T PRK05808          3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARIT---GTTD   76 (282)
T ss_pred             ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCC
Confidence            458999998 9999999999999987  8999999875211        0 0111110 0        01222   2456


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||+++              ..+..+.+++.+.+.++++ ++++  +||-....   ++++....+  .+.
T Consensus        77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~---~~~la~~~~--~~~  134 (282)
T PRK05808         77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLS---ITELAAATK--RPD  134 (282)
T ss_pred             H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHHhhC--CCc
Confidence            5 4689999999996              2235556788888888875 5555  66666542   233333332  345


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      |++|+
T Consensus       135 r~ig~  139 (282)
T PRK05808        135 KVIGM  139 (282)
T ss_pred             ceEEe
Confidence            78886

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.68  E-value=2.1e-08  Score=85.09  Aligned_cols=123  Identities=20%  Similarity=0.300  Sum_probs=85.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------hhHHHHHhcCC------CCC--------eEEEEeCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVTADISHMD------TGA--------VVRGFLGQ   79 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~------~g~~~dl~~~~------~~~--------~v~~~~~~   79 (258)
                      +..|+|||| |.+|+.+|+..+..|+  .|.|+|.++.      ++...-+.+..      -+.        .+..+..+
T Consensus        11 ~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen   11 IKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             ccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            357999998 9999999999999999  9999999873      12111111110      000        00111124


Q ss_pred             CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        80 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      +|..++++|||+||.++              .+|+++.+++.+.+++.|+...++ .||.+..   .++.+..-.  -+|
T Consensus        88 tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~il-~tNTSSl---~lt~ia~~~--~~~  147 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSSTIL-ATNTSSL---SLTDIASAT--QRP  147 (298)
T ss_pred             CCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccceEE-eecccce---eHHHHHhhc--cCh
Confidence            67888999999987764              789999999999999999764433 8998875   344444333  457


Q ss_pred             CcEEEE
Q 025075          160 KKLLGV  165 (258)
Q Consensus       160 ~kviG~  165 (258)
                      .|+.|+
T Consensus       148 srf~Gl  153 (298)
T KOG2304|consen  148 SRFAGL  153 (298)
T ss_pred             hhhcee
Confidence            788887

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.66  E-value=3.1e-07  Score=87.28  Aligned_cols=125  Identities=14%  Similarity=0.156  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH-----HhcCCC-----CCeEEEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-----ISHMDT-----GAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d-----l~~~~~-----~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +|||+|||+ |.||..++..|+..|.--+|+.+|+++++-..+.     +.+...     ...-+....++|+++++++|
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~a   79 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEA   79 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcC
Confidence            589999998 9999999999998864338999999875211110     101000     00001122356777889999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHH
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPI  146 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i  146 (258)
                      |++|+|.+.|...+....+ -.-++..+.+.++.|.++.+++.+|+  .|-|..+.-.+
T Consensus        80 dvi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~  137 (473)
T PLN02353         80 DIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAI  137 (473)
T ss_pred             CEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHH
Confidence            9999999988753210000 01235567788888888765554444  37788854433

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.66  E-value=4.9e-07  Score=77.44  Aligned_cols=101  Identities=18%  Similarity=0.102  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||++|.+|++++..|...|+  +|.++|+++++..  ..+..+...  ........  ++..++++++|+||++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~--~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG--ADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE--eChHHHHhcCCEEEEEC
Confidence            6899998449999999999998886  9999998765321  112211110  00111111  23367899999999996


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .    +            ..+.++++.+...-++.++|-++||.+
T Consensus        77 p----~------------~~~~~~l~~l~~~l~~~vvI~~~ngi~  105 (219)
T TIGR01915        77 P----W------------DHVLKTLESLRDELSGKLVISPVVPLA  105 (219)
T ss_pred             C----H------------HHHHHHHHHHHHhccCCEEEEeccCce
Confidence            2    1            112333444443333467888999987

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.66  E-value=2.3e-07  Score=82.78  Aligned_cols=118  Identities=14%  Similarity=0.229  Sum_probs=74.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHH--------Hh---cCC-C--------CCeEEEEeC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTAD--------IS---HMD-T--------GAVVRGFLG   78 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~d--------l~---~~~-~--------~~~v~~~~~   78 (258)
                      ..||+|||+ |.+|..++..|+..|+  +|+++|++++.- ...+        +.   +.. .        ...+.   .
T Consensus         3 i~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~---~   76 (291)
T PRK06035          3 IKVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR---T   76 (291)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE---e
Confidence            358999998 9999999999999998  899999987421 1111        11   000 0        01122   2


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ++++ +++++||+||.+..              .+.++.+++.+.+.++++ ++++  +||....   .++++....  -
T Consensus        77 ~~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~---~~~~la~~~--~  134 (291)
T PRK06035         77 STSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGI---MIAEIATAL--E  134 (291)
T ss_pred             eCCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCC---CHHHHHhhc--C
Confidence            3455 67899999999962              124456777778888765 5554  4665543   223444333  2


Q ss_pred             CCCcEEEE
Q 025075          158 DPKKLLGV  165 (258)
Q Consensus       158 ~~~kviG~  165 (258)
                      .+.|++|+
T Consensus       135 ~~~r~ig~  142 (291)
T PRK06035        135 RKDRFIGM  142 (291)
T ss_pred             CcccEEEE
Confidence            35678886

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.64  E-value=1.2e-07  Score=77.02  Aligned_cols=94  Identities=22%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC---C-----CCeEEEEeCCCchHhhhCCCCEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T-----GAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~---~-----~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ||+|+|| |..|.++|..|..+|+  +|.||+++++....+.-.+..   .     +..+.   .++|+++++++||+||
T Consensus         1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~---~t~dl~~a~~~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIK---ATTDLEEALEDADIII   74 (157)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEE---EESSHHHHHTT-SEEE
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccc---cccCHHHHhCcccEEE
Confidence            7999998 9999999999999996  999999986432222222321   1     12233   3578999999999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEec
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~t  137 (258)
                      ++.-                ....+++++.+..+-+ +..+++++
T Consensus        75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~~  103 (157)
T PF01210_consen   75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISAT  103 (157)
T ss_dssp             E-S-----------------GGGHHHHHHHHTTTSHTT-EEEETS
T ss_pred             eccc----------------HHHHHHHHHHHhhccCCCCEEEEec
Confidence            9851                1224778888888764 45565554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.60  E-value=8.5e-07  Score=79.72  Aligned_cols=118  Identities=17%  Similarity=0.256  Sum_probs=78.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--------CCCeEEEEeCCCchHhhhCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--------~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ++||+|+|+ |..|.++|..|+..++  +|.||.++++....+.-.|..        .+..+   ..++|+.+++++||+
T Consensus         1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l---~at~Dl~~a~~~ad~   74 (329)
T COG0240           1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDEEIVAEINETRENPKYLPGILLPPNL---KATTDLAEALDGADI   74 (329)
T ss_pred             CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCHHHHHHHHhcCcCccccCCccCCccc---ccccCHHHHHhcCCE
Confidence            479999998 9999999999999996  999999987522222112221        12222   246899999999999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC-cHHHHHHHHHHhCCCCCCc
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS-TVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~-~~~i~t~~~~~~~~~~~~k  161 (258)
                      |++..-                ...++++++++..+ .++..++.+|--.+. ....+++++++.  +|.++
T Consensus        75 iv~avP----------------s~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~--l~~~~  128 (329)
T COG0240          75 IVIAVP----------------SQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEE--LPDNP  128 (329)
T ss_pred             EEEECC----------------hHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHH--cCCCe
Confidence            999852                23356666666544 356777777632111 223667777665  45444

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.59  E-value=2.3e-07  Score=82.75  Aligned_cols=118  Identities=20%  Similarity=0.307  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHH-----HH----hcCCCC--------CeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-----DI----SHMDTG--------AVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~-----dl----~~~~~~--------~~v~~~~~~~d   81 (258)
                      .+||+|||+ |.+|..++..|+..|+  +|.+||++++.. ...     .+    .....+        ..+.   .+++
T Consensus         4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~   77 (292)
T PRK07530          4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIS---TATD   77 (292)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---eeCC
Confidence            468999998 9999999999999998  999999986421 111     00    011110        1122   2346


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||.+..              .+..+.+.+.+.+.+++ |++++  +||.+...   ++++....  ..+.
T Consensus        78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~---~s~la~~~--~~~~  135 (292)
T PRK07530         78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS---ITRLASAT--DRPE  135 (292)
T ss_pred             H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC---HHHHHhhc--CCcc
Confidence            5 56899999999862              11233445556777776 45655  45655532   23333332  2345


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      |++|+
T Consensus       136 r~~g~  140 (292)
T PRK07530        136 RFIGI  140 (292)
T ss_pred             cEEEe
Confidence            66664

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.56  E-value=3.4e-07  Score=81.59  Aligned_cols=99  Identities=20%  Similarity=0.242  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHh-----cCCC--------CCeEEEEeCCCch
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADIS-----HMDT--------GAVVRGFLGQPQL   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~-----~~~~--------~~~v~~~~~~~d~   82 (258)
                      .||+|||+ |.+|..++..|+..|+  +|.+||++++.-..     .++.     ....        ...+.   .+.++
T Consensus         2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~---~~~~~   75 (288)
T PRK09260          2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLS---YSLDL   75 (288)
T ss_pred             cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCcH
Confidence            48999998 9999999999999887  89999998752111     0110     0000        00122   24567


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCC
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  141 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd  141 (258)
                      ++++++||+||.+..              .+..+.+.+...+.++++ ++++  ++|.+.
T Consensus        76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt  119 (288)
T PRK09260         76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTST  119 (288)
T ss_pred             HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCC
Confidence            789999999999862              123444556666777764 4544  455544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.56  E-value=3e-07  Score=88.08  Aligned_cols=119  Identities=21%  Similarity=0.303  Sum_probs=78.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--------HH-HHhcCC-C--------CCeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--------TA-DISHMD-T--------GAVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--------~~-dl~~~~-~--------~~~v~~~~~~~d   81 (258)
                      ..||+|||+ |.+|+.+|..++..|+  +|++||++++...        .+ .+.... .        ...+.   .++|
T Consensus         5 ~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~---~~~~   78 (503)
T TIGR02279         5 VVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLI---PVTD   78 (503)
T ss_pred             ccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccE---EeCC
Confidence            358999998 9999999999999998  9999999875211        01 111110 0        01222   2456


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      + +++++||+||.+.              .++..+.+++...+.+++|+..+ +.||.+..-   ++++.....  .|.|
T Consensus        79 ~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~---i~~iA~~~~--~p~r  137 (503)
T TIGR02279        79 L-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLS---ITAIAAGLA--RPER  137 (503)
T ss_pred             H-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCC---HHHHHHhcC--cccc
Confidence            6 5689999999986              23466677778889888865443 378877752   234344332  3567


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      ++|+
T Consensus       138 ~~G~  141 (503)
T TIGR02279       138 VAGL  141 (503)
T ss_pred             eEEE
Confidence            7776

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=98.54  E-value=7.3e-07  Score=79.25  Aligned_cols=116  Identities=16%  Similarity=0.243  Sum_probs=78.9

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075           24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  102 (258)
Q Consensus        24 ~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~  102 (258)
                      .|+||+|++|++++..|.++|...+|..+|+........++...... ....++....++.++++++|+||++|......
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            38999999999999999998855699999987642221122221110 01112223457889999999999998753333


Q ss_pred             C-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          103 G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       103 g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      + ..+..+..-|+.-.+.+.+...+.+-+  -+|+|..+.
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~Vk--rlVytSS~~  118 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVK--RLVYTSSIS  118 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCC--EEEEEcCcc
Confidence            3 456678899999999999999987544  344555544

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.51  E-value=5.3e-07  Score=86.53  Aligned_cols=117  Identities=20%  Similarity=0.283  Sum_probs=75.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-----HHH----H-hcCCC--------CCeEEEEeCCCch
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TAD----I-SHMDT--------GAVVRGFLGQPQL   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-----~~d----l-~~~~~--------~~~v~~~~~~~d~   82 (258)
                      .||+|||+ |.+|..++..++..|+  +|++||++++...     ..+    + .+...        ...+.   .+.++
T Consensus         8 ~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~---~~~~~   81 (507)
T PRK08268          8 ATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLR---PVEAL   81 (507)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeE---EeCCH
Confidence            58999998 9999999999999998  9999999875111     111    1 11100        01233   23466


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                       +++++||+||.+.              .++..+.+.+...+.+.+ |++++  +||.+..-   ++++....  -.|+|
T Consensus        82 -~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~---i~~la~~~--~~p~r  139 (507)
T PRK08268         82 -ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLS---ITAIAAAL--KHPER  139 (507)
T ss_pred             -HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCccc
Confidence             4688999999986              234666677777888887 45555  56665531   23333333  24578


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      ++|+
T Consensus       140 ~~G~  143 (507)
T PRK08268        140 VAGL  143 (507)
T ss_pred             EEEE
Confidence            8887

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.50  E-value=8.9e-07  Score=79.59  Aligned_cols=119  Identities=21%  Similarity=0.306  Sum_probs=70.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HH-------HHhcC-C----CCCeEEEEeCCCchHhhh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TA-------DISHM-D----TGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~-------dl~~~-~----~~~~v~~~~~~~d~~~a~   86 (258)
                      .+||+|||+ |.+|..++..|+..|+  +|+++|++++... ..       ..... .    ....+.   .++|+.+++
T Consensus         4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---~~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIR---MEAGLAAAV   77 (311)
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceE---EeCCHHHHh
Confidence            468999998 9999999999998887  8999999774211 11       11000 0    000122   235667789


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ++||+||++.-    +          ......++...+..+.+ ++++  +||.+...   ++++.....  .+.+++|+
T Consensus        78 ~~aDlVi~av~----~----------~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~---~~~l~~~~~--~~~~~ig~  136 (311)
T PRK06130         78 SGADLVIEAVP----E----------KLELKRDVFARLDGLCDPDTIF--ATNTSGLP---ITAIAQAVT--RPERFVGT  136 (311)
T ss_pred             ccCCEEEEecc----C----------cHHHHHHHHHHHHHhCCCCcEE--EECCCCCC---HHHHHhhcC--CcccEEEE
Confidence            99999999862    1          12233455556666654 4544  45555432   233333322  24567776

>PLN00198 anthocyanidin reductase; Provisional

Probab=98.50  E-value=4e-06  Score=75.88  Aligned_cols=178  Identities=16%  Similarity=0.057  Sum_probs=100.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL----GQPQLENALTGMDL   91 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDi   91 (258)
                      |.++++|.|+||+|++|++++..|...|.  +|++++++.. .....++........+..+.    ...++.+.++++|+
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~   83 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDL   83 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCE
Confidence            56678999999999999999999999887  7877776643 11111111110001122221    12235667889999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC-------cHHHHHHHHH-----HhCCCC
Q 025075           92 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-------TVPIAAEVFK-----KAGTYD  158 (258)
Q Consensus        92 VIi~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~-------~~~i~t~~~~-----~~~~~~  158 (258)
                      ||++|+.......+ ..+++..|+.....+++.+.+...-..++.+|.-...       ....+.+-.+     .....+
T Consensus        84 vih~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~  163 (338)
T PLN00198         84 VFHVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKP  163 (338)
T ss_pred             EEEeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCC
Confidence            99999743211112 2345678999999999998876422344444431100       0000011000     000123


Q ss_pred             CCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       159 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      |....|.+.+...++....++..+++...++ ..|+|.+
T Consensus       164 p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~  202 (338)
T PLN00198        164 PTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS  202 (338)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence            3444555555455555566777788777777 4588875

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.49  E-value=1.5e-06  Score=78.18  Aligned_cols=120  Identities=23%  Similarity=0.254  Sum_probs=72.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-H--------HHhcCCC---------CCeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-A--------DISHMDT---------GAVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-~--------dl~~~~~---------~~~v~~~~~~~d   81 (258)
                      ++||+|||+ |.+|++++..|+..|+  +|++||++++.... .        .+.....         ...+.   .++|
T Consensus         2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~---~~~~   75 (308)
T PRK06129          2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIR---VTDS   75 (308)
T ss_pred             CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeE---EECc
Confidence            468999997 9999999999999998  89999998641110 0        1111110         01122   2457


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +.+++++||+|+.+..              .+....+.+...+.+..++..++ .||....   .++++.....  .+.+
T Consensus        76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~---~~~~la~~~~--~~~~  135 (308)
T PRK06129         76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL---LASAFTEHLA--GRER  135 (308)
T ss_pred             HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC---CHHHHHHhcC--Cccc
Confidence            7788999999999861              11333444555676666654444 4655442   2333444332  2445


Q ss_pred             EEEE
Q 025075          162 LLGV  165 (258)
Q Consensus       162 viG~  165 (258)
                      +++.
T Consensus       136 ~~~~  139 (308)
T PRK06129        136 CLVA  139 (308)
T ss_pred             EEEE
Confidence            6655

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.48  E-value=1.5e-06  Score=83.20  Aligned_cols=101  Identities=15%  Similarity=0.134  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-H--------Hh---cCCC--CCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D--------IS---HMDT--GAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-d--------l~---~~~~--~~~v~~~~~~~d~~~a~   86 (258)
                      +||+|||+ |.+|+.++..|+..|+  +|.+||++++....+ +        +.   ....  ...+.   .++++.+++
T Consensus         5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~---~~~~~~ea~   78 (495)
T PRK07531          5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLT---FCASLAEAV   78 (495)
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceE---eeCCHHHHh
Confidence            58999998 9999999999999998  999999987522111 0        00   0000  00122   245777889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~  142 (258)
                      ++||+||.+..              .+..+.+++...+.+++|+.. ++.||.+..
T Consensus        79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi  119 (495)
T PRK07531         79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGF  119 (495)
T ss_pred             cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Confidence            99999999861              124445566666777775443 347777664

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=98.47  E-value=1.7e-06  Score=78.91  Aligned_cols=169  Identities=15%  Similarity=0.045  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hH-HHHHhc---CCCCCeEEEEeC----CCchHhhhCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV-TADISH---MDTGAVVRGFLG----QPQLENALTG   88 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~-~~dl~~---~~~~~~v~~~~~----~~d~~~a~~~   88 (258)
                      .+++||.|+||+|++|++++..|...|.  +|+.+|+.... .. ..++..   ......+..+.+    ..++.+.+++
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~   90 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKN   90 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhC
Confidence            4457999999999999999999998886  89999975421 11 111110   000012222221    1234556789


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCC
Q 025075           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        89 aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP------vd~~~~i~t~~~~~~~~~~~~  160 (258)
                      +|+||++|+....+  .....+....|+....++.+.+++.+.+ .++.+|..      .+.  +. .    +.....|.
T Consensus        91 ~d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~--~~-~----e~~~~~p~  162 (348)
T PRK15181         91 VDYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDL--PK-I----EERIGRPL  162 (348)
T ss_pred             CCEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCC--CC-C----CCCCCCCC
Confidence            99999998754322  1233456788999999999999887543 34434311      110  00 0    11112344


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ...|.+.+...++....++..+++...++ ..++|.+
T Consensus       163 ~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~  199 (348)
T PRK15181        163 SPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRR  199 (348)
T ss_pred             ChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcC
Confidence            56676665555655556677788888888 4699976

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=98.47  E-value=2.5e-06  Score=80.42  Aligned_cols=171  Identities=12%  Similarity=0.040  Sum_probs=99.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+.|||.|+||+|+||++++..|..+|.  +|+.+|+.... ....+.+......+..+.. +-+++.+.++|+||++|
T Consensus       117 ~~~~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~~-~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlA  192 (436)
T PLN02166        117 GRKRLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFTG-RKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLA  192 (436)
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCc-cHhHhhhhccCCceEEEEC-ccccccccCCCEEEECc
Confidence            34568999999999999999999999887  99999975321 0111111100112222221 11234578999999999


Q ss_pred             CCCC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC------CCCCcHHHHHHHHHH-hCCCCCCcEEEEee
Q 025075           97 GVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPIAAEVFKK-AGTYDPKKLLGVTM  167 (258)
Q Consensus        97 g~~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN------Pvd~~~~i~t~~~~~-~~~~~~~kviG~t~  167 (258)
                      +...  ....+..+.+..|+.....+++.+++.+.  .+|.+|.      |.+.   ..++-.+. .....+....|.+.
T Consensus       193 a~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~SS~~VYg~~~~~---p~~E~~~~~~~p~~p~s~Yg~SK  267 (436)
T PLN02166        193 CPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTSTSEVYGDPLEH---PQKETYWGNVNPIGERSCYDEGK  267 (436)
T ss_pred             eeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEECcHHHhCCCCCC---CCCccccccCCCCCCCCchHHHH
Confidence            7432  11234456788999999999999988763  5555543      1110   00010000 00122234455555


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      +...++....++..+++..-++. .++|.+
T Consensus       268 ~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~  297 (436)
T PLN02166        268 RTAETLAMDYHRGAGVEVRIARIFNTYGPR  297 (436)
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEEccccCCC
Confidence            54555555556666777666663 478865

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.45  E-value=8.1e-07  Score=79.37  Aligned_cols=121  Identities=20%  Similarity=0.300  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-H--------HHHhcCC-CC-----CeEEEEeCCCchHh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T--------ADISHMD-TG-----AVVRGFLGQPQLEN   84 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~--------~dl~~~~-~~-----~~v~~~~~~~d~~~   84 (258)
                      ..||+|||+ |.+|..++..|+..|+  +|++||.+++... .        .++.... ..     ........++++ +
T Consensus         4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~   79 (295)
T PLN02545          4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-E   79 (295)
T ss_pred             cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-H
Confidence            358999998 9999999999999887  9999999864211 0        0111110 00     001111123454 5


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ++++||+||.+.              .++..+...+...+.++. |++++  +||-+...   ++++....  -.+.+++
T Consensus        80 ~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~---~~~l~~~~--~~~~r~~  138 (295)
T PLN02545         80 ELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS---ITRLASAT--QRPQQVI  138 (295)
T ss_pred             HhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhc--CCCcceE
Confidence            799999999986              122444556666677765 45544  46655532   22222222  1235677


Q ss_pred             EE
Q 025075          164 GV  165 (258)
Q Consensus       164 G~  165 (258)
                      |+
T Consensus       139 g~  140 (295)
T PLN02545        139 GM  140 (295)
T ss_pred             EE
Confidence            66

>PLN02427 UDP-apiose/xylose synthase

Probab=98.41  E-value=2.1e-06  Score=79.25  Aligned_cols=118  Identities=16%  Similarity=0.083  Sum_probs=73.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEe----CCCchHhhhCCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFL----GQPQLENALTGMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~----~~~d~~~a~~~aD   90 (258)
                      +.++|||.|+||+|++|++++..|..+ +.  +|+.+|++...... .+.........+..+.    ...++.++++++|
T Consensus        11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d   88 (386)
T PLN02427         11 PIKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMAD   88 (386)
T ss_pred             cccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCC
Confidence            556789999999999999999999887 45  89999976532111 1110000011222221    1224567788999


Q ss_pred             EEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           91 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +||++|+......  ....+.+..|+.-...+++..++.+  ..+|.+|.
T Consensus        89 ~ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~--~r~v~~SS  136 (386)
T PLN02427         89 LTINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN--KRLIHFST  136 (386)
T ss_pred             EEEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC--CEEEEEee
Confidence            9999997532211  1223456678877788888877665  34555553

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.40  E-value=1.9e-06  Score=63.80  Aligned_cols=94  Identities=21%  Similarity=0.274  Sum_probs=62.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEE-eCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      ||+|||+ |.+|++++..|...+. ..+|.++ ++++++..  ++.... .  ....  ..+..++++++|+||++.   
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~--~~~~~~-~--~~~~--~~~~~~~~~~advvilav---   69 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAA--ELAKEY-G--VQAT--ADDNEEAAQEADVVILAV---   69 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHH--HHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHH--HHHHhh-c--cccc--cCChHHhhccCCEEEEEE---
Confidence            7999998 9999999999988872 2388866 88765322  222211 1  1111  124578999999999997   


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                       +|..            +.++++.+....++.++|-++||
T Consensus        70 -~p~~------------~~~v~~~i~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   70 -KPQQ------------LPEVLSEIPHLLKGKLVISIAAG   96 (96)
T ss_dssp             --GGG------------HHHHHHHHHHHHTTSEEEEESTT
T ss_pred             -CHHH------------HHHHHHHHhhccCCCEEEEeCCC
Confidence             2221            45677777445578888888876

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=98.36  E-value=5.2e-06  Score=74.73  Aligned_cols=120  Identities=15%  Similarity=0.094  Sum_probs=81.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHHHHHhcCCCCCe--EEEEeCCCchHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAV--VRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~~dl~~~~~~~~--v~~~~~~~d~~~a~~~aDiV   92 (258)
                      ..++|+|+||+|++|+.+...|+.+|+  +|+--=++++.    ....+|....-...  ..++.....+.+++++||.|
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgV   82 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGV   82 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEE
Confidence            457999999999999999999999999  67766666542    13444443321111  11122334678999999999


Q ss_pred             EEcCCCCCCCCC-chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           93 IIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        93 Ii~ag~~~~~g~-~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      |++|....-... ...+++.-.++-.+.+.+.+.++. ...=+|+|+...
T Consensus        83 fH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~a  131 (327)
T KOG1502|consen   83 FHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSSTA  131 (327)
T ss_pred             EEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccHH
Confidence            999864322111 234678889999999999999887 444455666544

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=98.35  E-value=8.9e-06  Score=72.10  Aligned_cols=167  Identities=14%  Similarity=0.043  Sum_probs=95.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEE----eCCCchHhhhCC--CCEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGF----LGQPQLENALTG--MDLV   92 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~~~--aDiV   92 (258)
                      ||.|+||+|++|.+++..|...+...+|.++|+...   .....++...   ..+..+    ....++.+++++  +|+|
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v   77 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV   77 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence            589999999999999998887663237888886432   1111122111   112111    112245566776  8999


Q ss_pred             EEcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-----CCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        93 Ii~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-----d~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.+++....  ....-...+..|+.....+++.+.+...+..++.+|...     ....+ .+    .....++....|.
T Consensus        78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~-~~----e~~~~~~~~~Y~~  152 (317)
T TIGR01181        78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDA-FT----ETTPLAPSSPYSA  152 (317)
T ss_pred             EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCC-cC----CCCCCCCCCchHH
Confidence            999875321  112234466789998999999888875555565554310     00000 00    1111334445555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      +.....++-..+++..+++..-++. .++|.+
T Consensus       153 sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~  184 (317)
T TIGR01181       153 SKAASDHLVRAYHRTYGLPALITRCSNNYGPY  184 (317)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence            5444555555567777777766763 477754

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=98.33  E-value=1.6e-05  Score=72.32  Aligned_cols=171  Identities=16%  Similarity=0.073  Sum_probs=98.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE----EeCCCchHhhhCC--CCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG----FLGQPQLENALTG--MDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~--aDiVI   93 (258)
                      |+||.|+||+|++|++++..|..+|. ..++++|..........+.+......+..    +....++.+++++  +|+||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi   79 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM   79 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence            46899999999999999999998885 35677786532222122221100011111    1111234555664  89999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhC-------CC-cEEEEecCCCC------CcHHHHHHHHHHhCCC
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVN------STVPIAAEVFKKAGTY  157 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~-------p~-a~viv~tNPvd------~~~~i~t~~~~~~~~~  157 (258)
                      ++||.....  .....+.+..|+.....+++.+.++.       +. ..++.+|...-      ... .+++    ....
T Consensus        80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~-~~~E----~~~~  154 (355)
T PRK10217         80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDD-FFTE----TTPY  154 (355)
T ss_pred             ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCC-CcCC----CCCC
Confidence            999864321  11234567789988888888887642       12 24444443210      000 0011    1112


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+....|.+.+...++...+++..+++..-++ ..++|.+
T Consensus       155 ~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  194 (355)
T PRK10217        155 APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPY  194 (355)
T ss_pred             CCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            34445566666666676777888888777777 5688876

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=98.32  E-value=4.9e-06  Score=75.24  Aligned_cols=113  Identities=17%  Similarity=0.200  Sum_probs=74.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGF----LGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiVI   93 (258)
                      .++|.|+||+|++|++++..|+..+...+|+++|++.....  ..++..    ..+..+    ....++.++++++|+||
T Consensus         4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi   79 (324)
T TIGR03589         4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV   79 (324)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence            45899999999999999999988753238999988653211  111211    112111    11224566788999999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++||....+  ..+..+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S  124 (324)
T TIGR03589        80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS  124 (324)
T ss_pred             ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence            999864322  2234567889999999999998876543 455454

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>CHL00194 ycf39 Ycf39; Provisional

Probab=98.32  E-value=4.5e-06  Score=75.08  Aligned_cols=108  Identities=11%  Similarity=0.059  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||.|+||+|++|++++..|...|+  +|..++++......  +.+.... .+. ++....++.++++++|+||.+++..
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~~~--l~~~~v~-~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~   75 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKASF--LKEWGAE-LVYGDLSLPETLPPSFKGVTAIIDASTSR   75 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHhhh--HhhcCCE-EEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence            5899999999999999999999887  89999887532211  1111110 111 1111234678899999999987532


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..   ...+....|......+++.+++.+-+ .+|.+|
T Consensus        76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~S  109 (317)
T CHL00194         76 PS---DLYNAKQIDWDGKLALIEAAKAAKIK-RFIFFS  109 (317)
T ss_pred             CC---CccchhhhhHHHHHHHHHHHHHcCCC-EEEEec
Confidence            11   12234556777778888888887654 344444

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=98.32  E-value=4.5e-06  Score=76.92  Aligned_cols=171  Identities=15%  Similarity=0.060  Sum_probs=97.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhCCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~~aDiVIi   94 (258)
                      ..+.|||.|+||+|++|++++..|...|+  +|..+|+.... ..   ..........  ++....++..+++++|+||+
T Consensus        18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~---~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih   91 (370)
T PLN02695         18 PSEKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HM---SEDMFCHEFHLVDLRVMENCLKVTKGVDHVFN   91 (370)
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-cc---ccccccceEEECCCCCHHHHHHHHhCCCEEEE
Confidence            34567999999999999999999998887  89999975321 00   0000000111  01001123455789999999


Q ss_pred             cCCCCCCCC---CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-----CCcH--HHHHHHHHHhCCCCCCcEEE
Q 025075           95 PAGVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-----NSTV--PIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        95 ~ag~~~~~g---~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-----d~~~--~i~t~~~~~~~~~~~~kviG  164 (258)
                      +|+.....+   ......+..|+.....+++.+.+.+.+. +|.+|...     ....  .-+.+  .....++|...+|
T Consensus        92 ~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~-~V~~SS~~vYg~~~~~~~~~~~~E--~~~~p~~p~s~Yg  168 (370)
T PLN02695         92 LAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKR-FFYASSACIYPEFKQLETNVSLKE--SDAWPAEPQDAYG  168 (370)
T ss_pred             cccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCE-EEEeCchhhcCCccccCcCCCcCc--ccCCCCCCCCHHH
Confidence            986431111   1223346789999999999998876553 44344321     0000  00000  0000133444555


Q ss_pred             EeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+.....++....++..+++..-++ ..++|.+
T Consensus       169 ~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  201 (370)
T PLN02695        169 LEKLATEELCKHYTKDFGIECRIGRFHNIYGPF  201 (370)
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEEECCccCCC
Confidence            5555555555555677788877777 4588876

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=98.32  E-value=2.3e-05  Score=71.35  Aligned_cols=175  Identities=13%  Similarity=0.043  Sum_probs=95.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCe-EE-EEeCCCchHhhhCC--CCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAV-VR-GFLGQPQLENALTG--MDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~--aDiVIi   94 (258)
                      .++|.|+||+|++|++++..|.+.|.  +|+.+|++..... ..+......... +. .+....++.+.+++  .|+||.
T Consensus         4 ~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         4 GKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             CCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            46899999999999999999999887  8999998764211 111111110001 11 11111234455554  599999


Q ss_pred             cCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHH
Q 025075           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR  172 (258)
Q Consensus        95 ~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R  172 (258)
                      +++.+...  ..+-...+..|+.....+++.+.+.+....++.+|...-.-..--..-.......++....|.+.....+
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~  161 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAEL  161 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHHH
Confidence            99853221  1123456778898889999988766533356555542100000000000011113344566665544445


Q ss_pred             HHHHHHHHh-------CCCCCcee-EEEEecC
Q 025075          173 ANTFVAEVL-------GLDPRDVD-VPVVGGH  196 (258)
Q Consensus       173 ~~~~la~~l-------~v~~~~v~-~~v~G~h  196 (258)
                      +...+++.+       +++...++ +.++|.+
T Consensus       162 ~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~  193 (349)
T TIGR02622       162 VIASYRSSFFGVANFHGIKIASARAGNVIGGG  193 (349)
T ss_pred             HHHHHHHHhhcccccCCCcEEEEccCcccCCC
Confidence            555555554       55555566 4577764

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.31  E-value=8.9e-06  Score=73.20  Aligned_cols=100  Identities=20%  Similarity=0.316  Sum_probs=65.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh--cCC------CCCeEEEEeCCCchHhhhCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMD------TGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~--~~~------~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ||||+|||+ |.+|+.++..|...|+  +|.+||+++.....+.-.  +..      .+....   .+.++++.++++|+
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~D~   74 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLR---ATTDLAEALADADL   74 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeE---EeCCHHHHHhCCCE
Confidence            579999998 9999999999999887  899999976422211111  000      001122   13466678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd  141 (258)
                      ||++...                ..+.++++.+..+ .|+.+++..+|.++
T Consensus        75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~  109 (325)
T PRK00094         75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIE  109 (325)
T ss_pred             EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence            9999631                1134444555555 36777888887655

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.30  E-value=5.5e-06  Score=73.45  Aligned_cols=166  Identities=19%  Similarity=0.146  Sum_probs=97.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC-CEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a-DiVIi~ag~~   99 (258)
                      |+|.|+|++|++|++++..|.+.|+  +|+.+|+......... .+...  ............+.++++ |.||++++..
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~~--~~~d~~~~~~~~~~~~~~~d~vih~aa~~   75 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVEF--VVLDLTDRDLVDELAKGVPDAVIHLAAQS   75 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccce--eeecccchHHHHHHHhcCCCEEEEccccC
Confidence            3599999999999999999999887  9999998654222111 11110  000000112234556677 9999998865


Q ss_pred             CCCCCch---hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH-----HHHHHHHHHhCCCCCCcEEEEeeccHH
Q 025075          100 RKPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV-----PIAAEVFKKAGTYDPKKLLGVTMLDVV  171 (258)
Q Consensus       100 ~~~g~~r---~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~-----~i~t~~~~~~~~~~~~kviG~t~lds~  171 (258)
                      ..++..+   .++...|+...+++++...+.. -..++..|. +...-     ..+++-.  .. ..|....|.+.+...
T Consensus        76 ~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~-~~~~v~~ss-~~~~~~~~~~~~~~E~~--~~-~~p~~~Yg~sK~~~E  150 (314)
T COG0451          76 SVPDSNASDPAEFLDVNVDGTLNLLEAARAAG-VKRFVFASS-VSVVYGDPPPLPIDEDL--GP-PRPLNPYGVSKLAAE  150 (314)
T ss_pred             chhhhhhhCHHHHHHHHHHHHHHHHHHHHHcC-CCeEEEeCC-CceECCCCCCCCccccc--CC-CCCCCHHHHHHHHHH
Confidence            5444332   2478899999999999999832 223333222 11100     0111110  11 122223555655555


Q ss_pred             HHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          172 RANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       172 R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.....++..+++..-++ ..++|.+
T Consensus       151 ~~~~~~~~~~~~~~~ilR~~~vyGp~  176 (314)
T COG0451         151 QLLRAYARLYGLPVVILRPFNVYGPG  176 (314)
T ss_pred             HHHHHHHHHhCCCeEEEeeeeeeCCC
Confidence            555555556678888888 4699876

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.29  E-value=5.7e-06  Score=77.39  Aligned_cols=119  Identities=24%  Similarity=0.313  Sum_probs=74.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC----------------CCeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~~~d~~~   84 (258)
                      |||+|||. |.+|..++..|+..|+  +|..||+++.+..  ++.....                ...+.   .++++.+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~v~--~l~~g~~~~~e~~l~~~~~~~~~~g~l~---~~~~~~~   72 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEKVD--KLNKGKSPIYEPGLDELLAKALAAGRLR---ATTDYED   72 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHHHH--HhhcCCCCCCCCCHHHHHHHhhhcCCeE---EECCHHH
Confidence            58999998 9999999999999998  8999999865322  1222110                01122   2356777


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCCCcHHHHHHHHHH
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd~~~~i~t~~~~~  153 (258)
                      ++++||+||++.+.|.....      .-++..+.+.++.+.++. ++.+++.. |-|..+.-.+...+..+
T Consensus        73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~  137 (411)
T TIGR03026        73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER  137 (411)
T ss_pred             HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence            89999999999887654321      123444555666666553 45555443 34555443344344433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PLN02206 UDP-glucuronate decarboxylase

Probab=98.28  E-value=1.2e-05  Score=75.95  Aligned_cols=113  Identities=15%  Similarity=0.059  Sum_probs=73.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      +.|||.|+||+|+||++++..|..+|.  +|+.+|...... ...+.+......+..+.. +-+..++.++|+||++|+.
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~~~-~~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~  193 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFTGR-KENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP  193 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCccc-hhhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence            447999999999999999999999887  899998653210 011111001112222221 1123567899999999975


Q ss_pred             CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..  ....+..+.+..|+.....+++.+++.+.  .+|.+|
T Consensus       194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S  232 (442)
T PLN02206        194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS  232 (442)
T ss_pred             cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence            32  11123456778999999999999987753  555444

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=98.28  E-value=1.4e-05  Score=71.56  Aligned_cols=113  Identities=15%  Similarity=0.090  Sum_probs=72.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcC-CCCCeEEEE----eCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGF----LGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~-~~~~~v~~~----~~~~d~~~a~~~aDiVIi   94 (258)
                      +||.|+||+|++|++++..|..+|+  +|+.++++... .....+... .....+..+    ....++.++++++|+||+
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            5899999999999999999999987  88888876542 111111111 001122211    122346677899999999


Q ss_pred             cCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEe
Q 025075           95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLI  136 (258)
Q Consensus        95 ~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~  136 (258)
                      +|+..... .....+.+..|+.....+++.+.+. ... .++.+
T Consensus        83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~  125 (322)
T PLN02662         83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT  125 (322)
T ss_pred             eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence            99753221 1222356778999999999988776 433 34433

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.28  E-value=8.1e-06  Score=76.55  Aligned_cols=111  Identities=19%  Similarity=0.134  Sum_probs=67.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC---C----------eEEEEeCCCchHhh
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG---A----------VVRGFLGQPQLENA   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~---~----------~v~~~~~~~d~~~a   85 (258)
                      .++||+|||. |.+|.++|..|+..|+  +|..||+++.+-..  +.....+   .          .......+++    
T Consensus         2 ~~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~----   72 (415)
T PRK11064          2 SFETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRATTT----   72 (415)
T ss_pred             CccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceeeecc----
Confidence            4679999998 9999999999999997  99999998753222  2211100   0          0000111222    


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEe-cCCCCCcH
Q 025075           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI-SNPVNSTV  144 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~-tNPvd~~~  144 (258)
                      +++||+||++...|.++..      ..++..+.+.++.+.++.+ +.++|+- |-|..+.-
T Consensus        73 ~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~  127 (415)
T PRK11064         73 PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATE  127 (415)
T ss_pred             cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHH
Confidence            4589999999987754321      1234445666666766654 4454443 45666433

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.27  E-value=9.2e-06  Score=73.11  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..|||+|||+ |.+|++++..|...|+  +|.+||+++.                      .++.++++++|+||++.. 
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-   56 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-   56 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC-
Confidence            3479999998 9999999999999997  9999998642                      234577889999999862 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  139 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP  139 (258)
                                     ...++++++.+..+  .++.+++..|+.
T Consensus        57 ---------------~~~~~~v~~~l~~~~~~~~~ivi~~s~g   84 (308)
T PRK14619         57 ---------------MKGVRPVAEQVQALNLPPETIIVTATKG   84 (308)
T ss_pred             ---------------hHHHHHHHHHHHHhcCCCCcEEEEeCCc
Confidence                           11245555666543  466777777763

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.25  E-value=4.4e-06  Score=68.26  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||++||. |.+|+.++..|...|+  +|..||+++++..  ++.+..    ...   ..++.+++++||+||.+.
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~~~~~--~~~~~g----~~~---~~s~~e~~~~~dvvi~~v   65 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSPEKAE--ALAEAG----AEV---ADSPAEAAEQADVVILCV   65 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSHHHHH--HHHHTT----EEE---ESSHHHHHHHBSEEEE-S
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccchhhhh--hhHHhh----hhh---hhhhhhHhhcccceEeec
Confidence            679999998 9999999999999998  9999998764322  233322    222   246788999999999985

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PLN02572 UDP-sulfoquinovose synthase

Probab=98.25  E-value=1.4e-05  Score=75.59  Aligned_cols=174  Identities=14%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh--------------HHHH-HhcCCCCCeEEEEe---
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--------------VTAD-ISHMDTGAVVRGFL---   77 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g--------------~~~d-l~~~~~~~~v~~~~---   77 (258)
                      +++||.|+||+|++|++++..|+..|.  +|+++|....   ..              ..++ +.+.. ...+..+.   
T Consensus        46 ~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~Dl  122 (442)
T PLN02572         46 KKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVGDI  122 (442)
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEECCC
Confidence            457899999999999999999999887  8999985321   00              0000 00000 00122111   


Q ss_pred             -CCCchHhhhC--CCCEEEEcCCCCCCC-C-Cch---hhHHHHhHHHHHHHHHHhhhhCCCcEEEEec------CC---C
Q 025075           78 -GQPQLENALT--GMDLVIIPAGVPRKP-G-MTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLIS------NP---V  140 (258)
Q Consensus        78 -~~~d~~~a~~--~aDiVIi~ag~~~~~-g-~~r---~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t------NP---v  140 (258)
                       ...++.++++  ++|+||++|+....+ . .+.   ...+..|+.....+++.+.+++....++.+|      +|   +
T Consensus       123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~  202 (442)
T PLN02572        123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI  202 (442)
T ss_pred             CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence             1123445565  489999998643211 1 111   2335679999999999998887654555433      21   1


Q ss_pred             CCcHHH-HHHHHHHh---CCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          141 NSTVPI-AAEVFKKA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       141 d~~~~i-~t~~~~~~---~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +-. ++ .++.....   ....|....|.+.+....+....++..|++...++ ..|+|.+
T Consensus       203 ~E~-~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~  262 (442)
T PLN02572        203 EEG-YITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR  262 (442)
T ss_pred             ccc-ccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCC
Confidence            100 00 00000000   01234567788766656666677788898888888 5699986

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=98.25  E-value=1.3e-05  Score=79.36  Aligned_cols=168  Identities=14%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--Cc-hHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQ-LENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d-~~~a~~~aDiV   92 (258)
                      ++|||.|+||+|++|++++..|... ++  +|+.+|++.....  ++...   ..+..+.+  +  .+ +.++++++|+|
T Consensus       314 ~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~~--~~~~~---~~~~~~~gDl~d~~~~l~~~l~~~D~V  386 (660)
T PRK08125        314 RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAIS--RFLGH---PRFHFVEGDISIHSEWIEYHIKKCDVV  386 (660)
T ss_pred             cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhhh--hhcCC---CceEEEeccccCcHHHHHHHhcCCCEE
Confidence            4579999999999999999988874 66  8999998653111  11110   11221111  1  11 34568899999


Q ss_pred             EEcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH----HHHHHHHHH--hCCC-CCCcEE
Q 025075           93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV----PIAAEVFKK--AGTY-DPKKLL  163 (258)
Q Consensus        93 Ii~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~----~i~t~~~~~--~~~~-~~~kvi  163 (258)
                      |++|+....  ......+++..|+.....+.+.+.++++  .+|.+|.. .+..    ..+++-...  .... ++....
T Consensus       387 iHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~--~~V~~SS~-~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Y  463 (660)
T PRK08125        387 LPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNK--RIIFPSTS-EVYGMCTDKYFDEDTSNLIVGPINKQRWIY  463 (660)
T ss_pred             EECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCC--eEEEEcch-hhcCCCCCCCcCccccccccCCCCCCccch
Confidence            999875431  2223456778899999999999998763  44444431 1000    001110000  0000 122356


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      |.+.+...++....++..+++...++. .|+|.+
T Consensus       464 g~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~  497 (660)
T PRK08125        464 SVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR  497 (660)
T ss_pred             HHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence            666665666666667778888888884 588875

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.24  E-value=2.2e-05  Score=71.77  Aligned_cols=120  Identities=14%  Similarity=0.130  Sum_probs=74.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC--C-------CCCeEEEEeCCCchHhhhCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D-------TGAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~--~-------~~~~v~~~~~~~d~~~a~~~   88 (258)
                      .++|||+|||+ |.+|++++..|...+   ++++|.++++....+.-.+.  .       .+..+.   .++|+.+++++
T Consensus         5 ~~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~---~t~d~~~a~~~   77 (341)
T PRK12439          5 KREPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLR---ATTDFAEAANC   77 (341)
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeE---EECCHHHHHhc
Confidence            45689999998 999999999999877   47888876542222111111  0       011222   24677788999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCc-HHHHHHHHHHhCCCCCCcE
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST-VPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~-~~i~t~~~~~~~~~~~~kv  162 (258)
                      +|+||++.-                ...++++++.+..+ .++..++.++|-++.- ...+++.+++.  +|..++
T Consensus        78 aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~--l~~~~~  135 (341)
T PRK12439         78 ADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEV--LPGHPA  135 (341)
T ss_pred             CCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHH--cCCCCe
Confidence            999999862                22345666666655 4677888899876631 11244555543  444444

>PLN02650 dihydroflavonol-4-reductase

Probab=98.24  E-value=1.9e-05  Score=71.94  Aligned_cols=176  Identities=15%  Similarity=0.023  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhc-CCCCCeEEEE----eCCCchHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISH-MDTGAVVRGF----LGQPQLENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiV   92 (258)
                      ..++|.|+||+|++|++++..|+..|.  +|++++++.... ...++.. ......+..+    .....+.+.++++|.|
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~V   81 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGV   81 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEE
Confidence            345899999999999999999999887  888888765321 1112211 1000112211    1123456778899999


Q ss_pred             EEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC-----cHHHHHHHHH---Hh--CCCCCCc
Q 025075           93 IIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-----TVPIAAEVFK---KA--GTYDPKK  161 (258)
Q Consensus        93 Ii~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~-----~~~i~t~~~~---~~--~~~~~~k  161 (258)
                      |++|+.......+ ..+.+..|+.....+++.+.+.+.-..|+.+|.....     ..+...+-.+   ..  ...++..
T Consensus        82 iH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~  161 (351)
T PLN02650         82 FHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGW  161 (351)
T ss_pred             EEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccc
Confidence            9998753211111 2356788999999999998876532345555432110     0000000000   00  0000112


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+|.+.+....+....++..|++..-++ +.++|+.
T Consensus       162 ~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~  197 (351)
T PLN02650        162 MYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPF  197 (351)
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCC
Confidence            3444544444555556677788777777 5688875

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.23  E-value=9.8e-06  Score=75.32  Aligned_cols=111  Identities=19%  Similarity=0.264  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC------------CCeEEEEeCCCchHhhhCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~------------~~~v~~~~~~~d~~~a~~~   88 (258)
                      |||+|||+ |.||..++..++. |+  +|+.||+++++-.  .+.....            ....+ +..+++..++.++
T Consensus         1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~kv~--~l~~g~~~~~e~~l~~~l~~~~~~-l~~t~~~~~~~~~   73 (388)
T PRK15057          1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSRVA--MLNDRISPIVDKEIQQFLQSDKIH-FNATLDKNEAYRD   73 (388)
T ss_pred             CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHHHH--HHHcCCCCCCCcCHHHHHHhCCCc-EEEecchhhhhcC
Confidence            58999998 9999999977774 76  8999999875211  1111100            01111 2234556678899


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCc
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNST  143 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~  143 (258)
                      ||+||++.+.|......     ..++..+++.++.|.+..|+.++++ .|-|..+.
T Consensus        74 ad~vii~Vpt~~~~k~~-----~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt  124 (388)
T PRK15057         74 ADYVIIATPTDYDPKTN-----YFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFT  124 (388)
T ss_pred             CCEEEEeCCCCCccCCC-----CcChHHHHHHHHHHHhcCCCCEEEEeeecCCchH
Confidence            99999998765322111     1234455555566655445555443 45676643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.21  E-value=3.7e-05  Score=68.49  Aligned_cols=121  Identities=21%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-CCeEEE-EeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRG-FLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-~~~v~~-~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+|||+ |.+|+.++..|...|+  +|.++|++.+....+.-..... ...... .....+..+ ++++|+||++.. 
T Consensus         1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~k-   75 (304)
T PRK06522          1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAVK-   75 (304)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEecc-
Confidence            58999998 9999999999998886  8999998654211111111000 001110 011334444 489999999963 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EEeec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML  168 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi-G~t~l  168 (258)
                         +..            +.++++.+..+ .++..|+...|.++..-     .+.+.  +++.+++ |++..
T Consensus        76 ---~~~------------~~~~~~~l~~~l~~~~~iv~~~nG~~~~~-----~l~~~--~~~~~i~~~~~~~  125 (304)
T PRK06522         76 ---AYQ------------LPAALPSLAPLLGPDTPVLFLQNGVGHLE-----ELAAY--IGPERVLGGVVTH  125 (304)
T ss_pred             ---ccc------------HHHHHHHHhhhcCCCCEEEEecCCCCcHH-----HHHHh--cCcccEEEEEEEE
Confidence               111            23444555543 46778888999987432     22222  5566666 34433

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=98.20  E-value=3.7e-07  Score=81.16  Aligned_cols=118  Identities=20%  Similarity=0.232  Sum_probs=70.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEE----EEeC----CCchHhhhC--CCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD   90 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~----~~~~----~~d~~~a~~--~aD   90 (258)
                      |.|+||+|++|+.++..|+..+. .+|+++|+++..  ....++........++    .+.+    ...+..+++  +.|
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd   79 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD   79 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred             CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence            68999999999999999988765 589999998752  2223332111111121    1111    123456677  999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec----CCCC
Q 025075           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVN  141 (258)
Q Consensus        91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NPvd  141 (258)
                      +|+++|..-.-|  ...-.+.+..|+--.+.+++...+++-+-+|.+-|    ||++
T Consensus        80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~Ptn  136 (293)
T PF02719_consen   80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTN  136 (293)
T ss_dssp             EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--S
T ss_pred             EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCc
Confidence            999998642211  12346678899999999999999998776666654    5666

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=98.20  E-value=1.6e-05  Score=71.06  Aligned_cols=112  Identities=17%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||.|+||+|++|++++..|...|.  +|+.+|++.....  ++.+........++....++.++++++|+||.+++...
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~   76 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDRR--NLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYR   76 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCcccc--ccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecc
Confidence            4899999999999999999999886  8999998654211  11111110001111112245677889999999986432


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ....+..+....|+.....+++.+.+.+-. .++.+|
T Consensus        77 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  112 (328)
T TIGR03466        77 LWAPDPEEMYAANVEGTRNLLRAALEAGVE-RVVYTS  112 (328)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            223344566788998889999888876533 344444

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.20  E-value=2.7e-05  Score=69.45  Aligned_cols=119  Identities=12%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-----CCeEE-EEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVR-GFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-----~~~v~-~~~~~~d~~~a~~~aDiVIi   94 (258)
                      |||+|+|+ |.+|..++..|...|+  +|.++++ +++-..  +.+...     ..... .....++.++..+++|+||+
T Consensus         1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r-~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vil   74 (305)
T PRK12921          1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVR-PKRAKA--LRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVIL   74 (305)
T ss_pred             CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEec-HHHHHH--HHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEE
Confidence            68999998 9999999999999887  8999998 432111  111110     00100 00112355555689999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE-Eeec
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML  168 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG-~t~l  168 (258)
                      +...+    .            +.++++.+..+ .++.+|+.+.|.++..-     .+...  +|++++++ ++..
T Consensus        75 avk~~----~------------~~~~~~~l~~~~~~~~~ii~~~nG~~~~~-----~l~~~--~~~~~v~~g~~~~  127 (305)
T PRK12921         75 AVKAY----Q------------LDAAIPDLKPLVGEDTVIIPLQNGIGQLE-----QLEPY--FGRERVLGGVVFI  127 (305)
T ss_pred             Eeccc----C------------HHHHHHHHHhhcCCCCEEEEeeCCCChHH-----HHHHh--CCcccEEEEEEEE
Confidence            86321    1            24445555554 35677888899987322     22222  67777774 4433

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=98.19  E-value=1.1e-05  Score=73.34  Aligned_cols=167  Identities=14%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-----CchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVI   93 (258)
                      ||||.|+||+|++|++++..|... +.  +|+.+|+....  ..++...   ..+..+.+.     ..+.++++++|+||
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~~--~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi   73 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTDR--LGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL   73 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHHH--HHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence            479999999999999999998865 55  89999975421  1112111   112222111     12345678999999


Q ss_pred             EcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH----HHHHHHHHHh---CCCCCCcEEE
Q 025075           94 IPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV----PIAAEVFKKA---GTYDPKKLLG  164 (258)
Q Consensus        94 i~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~----~i~t~~~~~~---~~~~~~kviG  164 (258)
                      .+++....  ...+.......|+.....+++.+++..  ..+|.+|... +..    ..+.+-....   ...++....|
T Consensus        74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~--~~~v~~SS~~-vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~  150 (347)
T PRK11908         74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPSTSE-VYGMCPDEEFDPEASPLVYGPINKPRWIYA  150 (347)
T ss_pred             ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC--CeEEEEecce-eeccCCCcCcCccccccccCcCCCccchHH
Confidence            99875321  122334456678888888888888764  3555444321 000    0000000000   0001122344


Q ss_pred             EeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+.....+.....++..+++..-++ +.++|.+
T Consensus       151 ~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~  183 (347)
T PRK11908        151 CSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPG  183 (347)
T ss_pred             HHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCC
Confidence            4444344444445566677777777 4578864

>PLN02214 cinnamoyl-CoA reductase

Probab=98.17  E-value=2e-05  Score=71.80  Aligned_cols=170  Identities=15%  Similarity=0.034  Sum_probs=97.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGF----LGQPQLENALTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDi   91 (258)
                      ++++|.|+||+|++|++++..|..+|.  +|+.++++.....   ...+....  ..+..+    ....++.++++++|+
T Consensus         9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~d~   84 (342)
T PLN02214          9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGGK--ERLILCKADLQDYEALKAAIDGCDG   84 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCCC--CcEEEEecCcCChHHHHHHHhcCCE
Confidence            346899999999999999999999887  8888887653211   11221110  112211    112346678899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCc-------HHHHHHHHHHhC--CCCCCcE
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-------VPIAAEVFKKAG--TYDPKKL  162 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~-------~~i~t~~~~~~~--~~~~~kv  162 (258)
                      ||++|+...   ....+.+..|+.....+++.+.+.+.+ .++.+|.-...-       ...+++-.+...  ...+...
T Consensus        85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~  160 (342)
T PLN02214         85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNW  160 (342)
T ss_pred             EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCCcccCcccCCChhhccccccH
Confidence            999997532   233556788999999999998877544 344343211100       000111000000  0001112


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +|.+.....++....++..+++..-++ ..|+|.+
T Consensus       161 Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~  195 (342)
T PLN02214        161 YCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPP  195 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence            233333344455555666788777777 5688975

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.17  E-value=2.7e-05  Score=65.83  Aligned_cols=96  Identities=19%  Similarity=0.289  Sum_probs=63.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      ||+++|+|+ |++|+.++..+...|+  ||.+-.++.++.....-....  ..+.   + .+.++|.+.+|+||++.-  
T Consensus         1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~l~--~~i~---~-~~~~dA~~~aDVVvLAVP--   69 (211)
T COG2085           1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAALG--PLIT---G-GSNEDAAALADVVVLAVP--   69 (211)
T ss_pred             CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHhhc--cccc---c-CChHHHHhcCCEEEEecc--
Confidence            679999997 9999999999999998  888886665432221111111  1222   2 234689999999999962  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                                +..    +.++.+.+...-.+-++|-.|||.
T Consensus        70 ----------~~a----~~~v~~~l~~~~~~KIvID~tnp~   96 (211)
T COG2085          70 ----------FEA----IPDVLAELRDALGGKIVIDATNPI   96 (211)
T ss_pred             ----------HHH----HHhHHHHHHHHhCCeEEEecCCCc
Confidence                      122    344444454433366788899995

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=98.17  E-value=3e-05  Score=70.39  Aligned_cols=156  Identities=13%  Similarity=0.028  Sum_probs=87.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhc---CCCCCeEEE----EeCCCchHhhhCC--
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH---MDTGAVVRG----FLGQPQLENALTG--   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~---~~~~~~v~~----~~~~~d~~~a~~~--   88 (258)
                      +||.|+||+|++|++++..|...|.  +|+++|++...   .....+..   ......+..    +....++.+++++  
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   78 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK   78 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence            3899999999999999999999887  89999986531   11111110   000011211    1111234556664  


Q ss_pred             CCEEEEcCCCCCCC-C-CchhhHHHHhHHHHHHHHHHhhhhC-CC-cEEEEecC------CCCCcHHHHHHHHHHhCCCC
Q 025075           89 MDLVIIPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCC-PN-ATVNLISN------PVNSTVPIAAEVFKKAGTYD  158 (258)
Q Consensus        89 aDiVIi~ag~~~~~-g-~~r~d~~~~n~~i~~~i~~~i~~~~-p~-a~viv~tN------Pvd~~~~i~t~~~~~~~~~~  158 (258)
                      .|+||++|+..... . ......+..|+.-...+++.+.+++ .+ ..++.+|.      +.+.  + ++    ....++
T Consensus        79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~--~-~~----E~~~~~  151 (343)
T TIGR01472        79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEI--P-QN----ETTPFY  151 (343)
T ss_pred             CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCC--C-CC----CCCCCC
Confidence            59999999864321 1 1123344567777788888888765 22 24444332      1110  0 00    111233


Q ss_pred             CCcEEEEeeccHHHHHHHHHHHhCCCC
Q 025075          159 PKKLLGVTMLDVVRANTFVAEVLGLDP  185 (258)
Q Consensus       159 ~~kviG~t~lds~R~~~~la~~l~v~~  185 (258)
                      |....|.+.+...++....++..+++.
T Consensus       152 p~~~Y~~sK~~~e~~~~~~~~~~~~~~  178 (343)
T TIGR01472       152 PRSPYAAAKLYAHWITVNYREAYGLFA  178 (343)
T ss_pred             CCChhHHHHHHHHHHHHHHHHHhCCce
Confidence            455566666666666666677766653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=98.17  E-value=1.8e-05  Score=70.16  Aligned_cols=164  Identities=15%  Similarity=0.058  Sum_probs=110.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCC-CCeEEEEeCCCchHhhh--CCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENAL--TGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~--~~aDiVIi~a   96 (258)
                      |+|.|+|++|+|||+.+..|++.|+  +++.+|.-.. ...+++-....+ ...+.+   ..-+.+.+  ...|.||..|
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D---~~~L~~vf~~~~idaViHFA   75 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQFKFYEGDLLD---RALLTAVFEENKIDAVVHFA   75 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhccCceEEecccc---HHHHHHHHHhcCCCEEEECc
Confidence            6899999999999999999999998  9999998653 222221111111 011111   11123333  3789999988


Q ss_pred             CCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-----cCCCCCcHHHHHHHHHHhCCCCCCcEEEEeecc
Q 025075           97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-----SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLD  169 (258)
Q Consensus        97 g~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-----tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~ld  169 (258)
                      +...-+  -+.-+.++..|+--...+.+.+.+++.+-+|..-     .+|...   -++|    .....|.+..|-|.|.
T Consensus        76 a~~~VgESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~---PI~E----~~~~~p~NPYG~sKlm  148 (329)
T COG1087          76 ASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTS---PISE----TSPLAPINPYGRSKLM  148 (329)
T ss_pred             cccccchhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCc---ccCC----CCCCCCCCcchhHHHH
Confidence            743211  1234678899999999999999999987666432     355542   1222    2235577889999998


Q ss_pred             HHHHHHHHHHHhCCCCCceeEE-EEecC
Q 025075          170 VVRANTFVAEVLGLDPRDVDVP-VVGGH  196 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~~~-v~G~h  196 (258)
                      +.++.+-+++..+....-++-+ +.|-|
T Consensus       149 ~E~iL~d~~~a~~~~~v~LRYFN~aGA~  176 (329)
T COG1087         149 SEEILRDAAKANPFKVVILRYFNVAGAC  176 (329)
T ss_pred             HHHHHHHHHHhCCCcEEEEEecccccCC
Confidence            9999999999988766666643 77866

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.17  E-value=2.8e-05  Score=70.69  Aligned_cols=103  Identities=19%  Similarity=0.163  Sum_probs=63.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC---CC-eE----EEEeCCCchHhhhCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GA-VV----RGFLGQPQLENALTGMD   90 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~---~~-~v----~~~~~~~d~~~a~~~aD   90 (258)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|+++.. ..+.-.....   .. ..    ..+..+++. ++++++|
T Consensus         1 ~~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D   75 (341)
T PRK08229          1 MMARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATAD   75 (341)
T ss_pred             CCceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccCh-hhccCCC
Confidence            3579999998 9999999999999887  89999985421 1111011000   00 00    011123454 5789999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS  142 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~  142 (258)
                      +||++...+    .            ..++++.+..+ .++.+++..+|..+.
T Consensus        76 ~vil~vk~~----~------------~~~~~~~l~~~~~~~~iii~~~nG~~~  112 (341)
T PRK08229         76 LVLVTVKSA----A------------TADAAAALAGHARPGAVVVSFQNGVRN  112 (341)
T ss_pred             EEEEEecCc----c------------hHHHHHHHHhhCCCCCEEEEeCCCCCc
Confidence            999997321    1            12334455554 466777778998873

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=98.15  E-value=2.1e-05  Score=70.97  Aligned_cols=120  Identities=16%  Similarity=0.207  Sum_probs=72.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-----CCCCCeEEEEeCCCchHhhhCCCCE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-----MDTGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-----~~~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ++.+|||+|+|+ |.+|..++..|...|+  +|.+++++...  ......     ......+......++. ++...+|+
T Consensus         2 ~~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~   75 (313)
T PRK06249          2 DSETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYE--AVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDW   75 (313)
T ss_pred             CCcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHH--HHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCE
Confidence            456689999998 9999999999999887  89999986521  111110     0000011000111222 35788999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ||++.-    ..+            ..+.++.+... .|++.++...|-++.    . +.+.+.  +|+++|++-
T Consensus        76 vilavK----~~~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~----~-e~l~~~--~~~~~v~~g  127 (313)
T PRK06249         76 VLVGLK----TTA------------NALLAPLIPQVAAPDAKVLLLQNGLGV----E-EQLREI--LPAEHLLGG  127 (313)
T ss_pred             EEEEec----CCC------------hHhHHHHHhhhcCCCCEEEEecCCCCc----H-HHHHHH--CCCCcEEEE
Confidence            999962    111            12344444443 478888889999873    1 223332  788887754

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=98.14  E-value=1.6e-05  Score=75.83  Aligned_cols=120  Identities=18%  Similarity=0.232  Sum_probs=83.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhhCC--CCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~--aDiV   92 (258)
                      ++|.|+||+|++|+.+...++..+. .+|+++|+++.+  ....++.+.....++..+.    ....++.++++  .|+|
T Consensus       251 K~vLVTGagGSiGsel~~qil~~~p-~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd~V  329 (588)
T COG1086         251 KTVLVTGGGGSIGSELCRQILKFNP-KEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVDIV  329 (588)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhcCC-CEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCceE
Confidence            3799999999999999998887754 699999998852  2223444421112222222    12235678888  9999


Q ss_pred             EEcCCCCCCCCC--chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec----CCCC
Q 025075           93 IIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVN  141 (258)
Q Consensus        93 Ii~ag~~~~~g~--~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t----NPvd  141 (258)
                      +++|..-.-|-.  .-.+-...|+--.+++++...+++=+..+++-|    ||++
T Consensus       330 fHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtN  384 (588)
T COG1086         330 FHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTN  384 (588)
T ss_pred             EEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCch
Confidence            999875444432  335667889999999999999998776776655    5655

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=98.14  E-value=3.6e-05  Score=69.89  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=97.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE----EEeCCCchHhhhC--CCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR----GFLGQPQLENALT--GMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~----~~~~~~d~~~a~~--~aDiVIi   94 (258)
                      |||.|+||+|++|++++..|...|. ..++.+|.....+....+........+.    ++....++.++++  ++|+||.
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   79 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH   79 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence            5899999999999999999988775 2466677543211111111110011111    1111123445565  4899999


Q ss_pred             cCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhC-------CC-cEEEEecCCCCCcH--------------HHHHHH
Q 025075           95 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVNSTV--------------PIAAEV  150 (258)
Q Consensus        95 ~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~-------p~-a~viv~tNPvd~~~--------------~i~t~~  150 (258)
                      +|+....  +.....+.+..|+.....+++.+.++.       .. ..++.+|-.. +..              +.++  
T Consensus        80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~--  156 (352)
T PRK10084         80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFT--  156 (352)
T ss_pred             CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcc--
Confidence            9986421  112235678889999999999888751       12 2344443211 000              0001  


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                        +...+.|....|.+.....++-..+++..+++...++ ..|+|.+
T Consensus       157 --E~~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~  201 (352)
T PRK10084        157 --ETTAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPY  201 (352)
T ss_pred             --ccCCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCC
Confidence              1112344566777766666666667788888777677 4588876

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.13  E-value=3.2e-05  Score=70.11  Aligned_cols=97  Identities=21%  Similarity=0.266  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC------C--CCCeEEEEeCCCchHhhhCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------D--TGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~------~--~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      +|||+|||+ |.+|+.++..|...|+  +|.+||+++++.+.+.-.+.      .  .+..+.   .++++.++++++|+
T Consensus         4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~---~~~~~~e~~~~aD~   77 (328)
T PRK14618          4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAAALAAERENREYLPGVALPAELY---PTADPEEALAGADF   77 (328)
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeE---EeCCHHHHHcCCCE
Confidence            579999998 9999999999998887  89999997643222211110      0  011122   23467778899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ||++..    +..            ++++.+.+   .|+.+++.++|.++
T Consensus        78 Vi~~v~----~~~------------~~~v~~~l---~~~~~vi~~~~Gi~  108 (328)
T PRK14618         78 AVVAVP----SKA------------LRETLAGL---PRALGYVSCAKGLA  108 (328)
T ss_pred             EEEECc----hHH------------HHHHHHhc---CcCCEEEEEeeccc
Confidence            999862    110            23333333   36667777888643

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=98.11  E-value=2.5e-05  Score=71.38  Aligned_cols=71  Identities=23%  Similarity=0.396  Sum_probs=48.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---ChhHHHHHh--cCCC--------CCeEEEEeCCCch
Q 025075           22 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------GAVVRGFLGQPQL   82 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~------~~~ei~L~D~~~---~~g~~~dl~--~~~~--------~~~v~~~~~~~d~   82 (258)
                      ||+|||+ |..|.++|..|...+      +..+|.||.+++   .......+.  |...        +..+.   .++|+
T Consensus         1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~---at~dl   76 (342)
T TIGR03376         1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLV---AVPDL   76 (342)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeE---EECCH
Confidence            6999998 999999999998877      123999999854   122222222  2111        11222   35688


Q ss_pred             HhhhCCCCEEEEcC
Q 025075           83 ENALTGMDLVIIPA   96 (258)
Q Consensus        83 ~~a~~~aDiVIi~a   96 (258)
                      ++++++||+||++.
T Consensus        77 ~eal~~ADiIIlAV   90 (342)
T TIGR03376        77 VEAAKGADILVFVI   90 (342)
T ss_pred             HHHHhcCCEEEEEC
Confidence            89999999999985

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=98.11  E-value=3.5e-05  Score=69.73  Aligned_cols=111  Identities=15%  Similarity=-0.023  Sum_probs=67.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcC--CCCCeEEEE----eCCCchHhhhC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTGAVVRGF----LGQPQLENALT   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~--~~~~~v~~~----~~~~d~~~a~~   87 (258)
                      ..+.++|.|+||+|++|++++..|...|.  +|+++|++...   .....+...  .....+..+    ....++.++++
T Consensus         3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~   80 (340)
T PLN02653          3 DPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLD   80 (340)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHH
Confidence            34457999999999999999999999887  89999875421   111111100  000112111    11123445566


Q ss_pred             C--CCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCC
Q 025075           88 G--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  129 (258)
Q Consensus        88 ~--aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p  129 (258)
                      +  .|+||++|+......  ......+..|+.....+++.+.++..
T Consensus        81 ~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~  126 (340)
T PLN02653         81 DIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ  126 (340)
T ss_pred             HcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence            4  599999998643211  11233456788888888888887764

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=98.11  E-value=1.3e-05  Score=65.87  Aligned_cols=93  Identities=25%  Similarity=0.288  Sum_probs=65.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEEcCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |+|+||+|++|+.++..|..++.  +|.++-+++.+..  +  +.    .+..+.+    ..++.++++++|.||.++|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~~~--~--~~----~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSKAE--D--SP----GVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGGHH--H--CT----TEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchhcc--c--cc----ccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            78999999999999999999996  9999988764222  1  11    2222222    12457889999999999875


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.+           ..+.++.+++.+++.+.. .++.+|
T Consensus        71 ~~~-----------~~~~~~~~~~a~~~~~~~-~~v~~s   97 (183)
T PF13460_consen   71 PPK-----------DVDAAKNIIEAAKKAGVK-RVVYLS   97 (183)
T ss_dssp             TTT-----------HHHHHHHHHHHHHHTTSS-EEEEEE
T ss_pred             hcc-----------cccccccccccccccccc-cceeee
Confidence            433           167778888888887644 444443

...

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.11  E-value=3e-05  Score=70.23  Aligned_cols=99  Identities=17%  Similarity=0.357  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc--CC------CCCeEEEEeCCCchHhhh-CCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH--MD------TGAVVRGFLGQPQLENAL-TGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~--~~------~~~~v~~~~~~~d~~~a~-~~aDi   91 (258)
                      |||+|||| |.+|+.++..|...|.  +|.+|+++++..+.+.-.+  ..      .+..++.   ++|+.+++ .++|+
T Consensus         1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~Dl   74 (326)
T PRK14620          1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNATC   74 (326)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCCCE
Confidence            58999998 9999999999998886  8999999764222221111  11      1112222   35666676 58999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh-h-CCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~-~-~p~a~viv~tNPvd  141 (258)
                      ||++.-                ..-+.++++.+.. + .++..++..+|-.+
T Consensus        75 iiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~  110 (326)
T PRK14620         75 IILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIE  110 (326)
T ss_pred             EEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence            999862                1123455555654 3 46777888888764

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.09  E-value=5.4e-05  Score=71.24  Aligned_cols=121  Identities=15%  Similarity=0.115  Sum_probs=70.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCC---------eEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA---------VVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~---------~v~~~~~~~d~~~a~~~a   89 (258)
                      ++|||+|||. |+||..++..|+. ++  +|+.||+++.+-  .+|.....+.         .......+++. +++++|
T Consensus         5 ~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~~v--e~l~~G~~~~~e~~~~~l~~~g~l~~t~~~-~~~~~a   77 (425)
T PRK15182          5 DEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKKRI--LELKNGVDVNLETTEEELREARYLKFTSEI-EKIKEC   77 (425)
T ss_pred             CCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHHHH--HHHHCcCCCCCCCCHHHHHhhCCeeEEeCH-HHHcCC
Confidence            4589999997 9999999999877 45  999999987532  2233221100         00011123454 579999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEE-ecCCCCCcHHHHHHHHH
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNL-ISNPVNSTVPIAAEVFK  152 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv-~tNPvd~~~~i~t~~~~  152 (258)
                      |++|++.+.|.+... .     .++..+....+.|.++.+ ..++|+ .|-|..+.-.++...+.
T Consensus        78 dvvii~Vptp~~~~~-~-----~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~  136 (425)
T PRK15182         78 NFYIITVPTPINTYK-Q-----PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA  136 (425)
T ss_pred             CEEEEEcCCCCCCCC-C-----cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence            999999988754321 1     123334444555555543 444443 45666644333333333

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.06  E-value=4.9e-05  Score=70.05  Aligned_cols=98  Identities=14%  Similarity=0.239  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCC---hhHHHHHhc--CC--------CCCeEEEEeCCCch
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISH--MD--------TGAVVRGFLGQPQL   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~-----~~ei~L~D~~~~---~g~~~dl~~--~~--------~~~~v~~~~~~~d~   82 (258)
                      +||+|||+ |..|+++|..|...+.     ..+|.||.++++   +....++.+  ..        .+..+.   .++|+
T Consensus        12 ~ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~---~tsdl   87 (365)
T PTZ00345         12 LKVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIV---AVSDL   87 (365)
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceE---EecCH
Confidence            69999998 9999999999998762     138999998874   122333432  21        122333   35688


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh--hC-CCcEEEEecC
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK--CC-PNATVNLISN  138 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~--~~-p~a~viv~tN  138 (258)
                      .+++++||+||++.-                ...++++++.+..  +- +++++|.++-
T Consensus        88 ~eav~~aDiIvlAVP----------------sq~l~~vl~~l~~~~~l~~~~~iIS~aK  130 (365)
T PTZ00345         88 KEAVEDADLLIFVIP----------------HQFLESVLSQIKENNNLKKHARAISLTK  130 (365)
T ss_pred             HHHHhcCCEEEEEcC----------------hHHHHHHHHHhccccccCCCCEEEEEeC
Confidence            889999999999851                2234666666665  32 3445555543

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=98.04  E-value=6.5e-05  Score=67.70  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHH-HHHhcCC-CCCe-EE-EEeCCCchHhhhC--CCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMD-TGAV-VR-GFLGQPQLENALT--GMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~-~dl~~~~-~~~~-v~-~~~~~~d~~~a~~--~aDiVI   93 (258)
                      |||.|+||+|++|++++..|...|.  +|+++|+... .... ..+.+.. .... +. .+....++.++++  ++|+||
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vv   78 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVI   78 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEE
Confidence            6899999999999999999998887  8999986432 1111 1111110 0011 11 1111112334454  689999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++++.....  .....+.+..|+.....+++.+++.+.. .++.+|
T Consensus        79 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  123 (338)
T PRK10675         79 HFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NLIFSS  123 (338)
T ss_pred             ECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            998754211  1233567788999999999988876533 344444

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=98.00  E-value=7.1e-05  Score=72.40  Aligned_cols=116  Identities=13%  Similarity=0.064  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhc-----CC--CCCeEEEE----eCCCchHhh
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISH-----MD--TGAVVRGF----LGQPQLENA   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~-----~~--~~~~v~~~----~~~~d~~~a   85 (258)
                      +.+.|.|+||+|++|..++..|+..|.  +|++++++..+...  .++.+     ..  ....+..+    ....++.++
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            345799999999999999999998887  89999987653221  11111     00  00112211    111245567


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.++|+||+++|........-...+..|......+++.+.+.+-. .||++|
T Consensus       157 LggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VS  207 (576)
T PLN03209        157 LGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVT  207 (576)
T ss_pred             hcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEc
Confidence            899999999998653321111233556777788888888776543 455444

>PLN02583 cinnamoyl-CoA reductase

Probab=97.99  E-value=0.00012  Score=65.37  Aligned_cols=113  Identities=16%  Similarity=0.121  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH----HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV----TADISHMDTGAVVRGF----LGQPQLENALTGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~----~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDiV   92 (258)
                      ++|.|+||+|++|++++..|+.+|+  +|++.+++.....    ..++...  ...+..+    ....++.+++.++|.|
T Consensus         7 k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~v   82 (297)
T PLN02583          7 KSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSGL   82 (297)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCEE
Confidence            4799999999999999999999997  8888877532111    1122110  1112211    1123456789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.+++.+........+++..|+.....+.+.+.+..--..||++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~S  127 (297)
T PLN02583         83 FCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTS  127 (297)
T ss_pred             EEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            887654322111234577889999999999887763112444443

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=97.99  E-value=4.7e-05  Score=66.80  Aligned_cols=99  Identities=21%  Similarity=0.251  Sum_probs=68.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  102 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~  102 (258)
                      |.|+||+|++|++++..|...|.  +|+.++++.......  ...    .+..... .+..++++++|+||++++.+...
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~~----~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~   71 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KWE----GYKPWAP-LAESEALEGADAVINLAGEPIAD   71 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cce----eeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence            57999999999999999998887  899999876421110  000    1111111 23356789999999999865432


Q ss_pred             C-C---chhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075          103 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus       103 g-~---~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      + .   ...++...|+...+.+++.+.+++..
T Consensus        72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~  103 (292)
T TIGR01777        72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK  103 (292)
T ss_pred             ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence            2 1   22346677999999999999987643

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=97.97  E-value=8.8e-05  Score=66.08  Aligned_cols=160  Identities=9%  Similarity=0.099  Sum_probs=85.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc-hHhhh-----CCCCEEEEcC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA   96 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aDiVIi~a   96 (258)
                      |.|+||+|++|++++..|...|. ..+.++|..........+.+.    .+.......+ +++.+     .++|+||++|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~----~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDL----DIADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhh----hhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            78999999999999999998885 357778875421111111111    1100000011 12222     3699999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCCcEEEEeeccH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP------vd~~~~i~t~~~~~~~~~~~~kviG~t~lds  170 (258)
                      +.+..........+..|+.....+.+.+.+.+-  .++..|..      .+.   .+    .......|...+|.+....
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~SS~~vyg~~~~~---~~----~E~~~~~p~~~Y~~sK~~~  147 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTDD---FI----EEREYEKPLNVYGYSKFLF  147 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEcchHHhCcCCCC---CC----ccCCCCCCCCHHHHHHHHH
Confidence            754333333445678899999999999887653  34444321      110   00    0001112223344443333


Q ss_pred             HHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          171 VRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       171 ~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .++....++..+++...++ ..++|.+
T Consensus       148 E~~~~~~~~~~~~~~~~lR~~~vyG~~  174 (308)
T PRK11150        148 DEYVRQILPEANSQICGFRYFNVYGPR  174 (308)
T ss_pred             HHHHHHHHHHcCCCEEEEeeeeecCCC
Confidence            3443444444566666666 4578865

>PLN02778 3,5-epimerase/4-reductase

Probab=97.97  E-value=0.00016  Score=64.67  Aligned_cols=90  Identities=22%  Similarity=0.172  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~a   96 (258)
                      +.|||.|+||+|++|++++..|..+|.  +|++...+..        +.            ..+..+++  +.|+||++|
T Consensus         8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~~~--------~~------------~~v~~~l~~~~~D~ViH~A   65 (298)
T PLN02778          8 ATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGRLE--------NR------------ASLEADIDAVKPTHVFNAA   65 (298)
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCccC--------CH------------HHHHHHHHhcCCCEEEECC
Confidence            447999999999999999999998887  7765432211        10            00112222  689999999


Q ss_pred             CCCCCCC-----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075           97 GVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus        97 g~~~~~g-----~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      +....+.     ....+.+..|+.....+++.+++.+..
T Consensus        66 a~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~  104 (298)
T PLN02778         66 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV  104 (298)
T ss_pred             cccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            8643222     234567788999999999999887644

>PRK06194 hypothetical protein; Provisional

Probab=97.96  E-value=0.00046  Score=60.70  Aligned_cols=159  Identities=20%  Similarity=0.157  Sum_probs=87.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QP---QLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~------   87 (258)
                      +++|.|+||+|++|++++..|..+|.  +|+++|++...  ....++....  ..+..+.+ -+   ++++.++      
T Consensus         6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~   81 (287)
T PRK06194          6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERF   81 (287)
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999987  89999987542  2222332211  12221211 11   2333333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCC-----cEEEEecCCCCCcHHHHHHHH
Q 025075           88 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF  151 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~-----a~viv~tNPvd~~~~i~t~~~  151 (258)
                       ..|+||.++|.....   ..+..   ..+..|+.    ..+.+.+.+.+.+.+     +.++++|.....         
T Consensus        82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~---------  152 (287)
T PRK06194         82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL---------  152 (287)
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence             479999999874321   11111   23445544    444455556555432     566665543221         


Q ss_pred             HHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       152 ~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                        . +.+..-.++.+..-...+...+++.++.....+++..+.
T Consensus       153 --~-~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~  192 (287)
T PRK06194        153 --L-APPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLC  192 (287)
T ss_pred             --c-CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEE
Confidence              1 123333445544444455666777777666666654443

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.96  E-value=8.2e-05  Score=57.69  Aligned_cols=72  Identities=21%  Similarity=0.255  Sum_probs=47.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||+|+||+|.+|+.++..|...+.++-+.+++.....++.+.-.+..  ....+....  .+ .+.+.++|+||++.
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence            79999999999999999999887777777787766333332222211  111222211  23 35689999999986

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=97.95  E-value=0.00025  Score=70.32  Aligned_cols=175  Identities=14%  Similarity=0.037  Sum_probs=95.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhhh--CCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~--~~aDiV   92 (258)
                      +++||.|+||+|++|++++..|...+.--+|+.+|+.........+........+..+.+ -.|   +...+  .++|+|
T Consensus         5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~V   84 (668)
T PLN02260          5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDTI   84 (668)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCEE
Confidence            457999999999999999999987643238999987431111111111000112222211 112   22222  689999


Q ss_pred             EEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-----CCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-----VNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        93 Ii~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-----vd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.+|+......  ....++...|+.....+++.+++.+.-..+|.+|.-     .... +...  ........|....|.
T Consensus        85 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~-~~~~--~~E~~~~~p~~~Y~~  161 (668)
T PLN02260         85 MHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDED-ADVG--NHEASQLLPTNPYSA  161 (668)
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccc-cccC--ccccCCCCCCCCcHH
Confidence            99998643211  122456678999899999998887632345545431     0000 0000  000001123344555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.+...++-...++..+++..-++ ..|+|.+
T Consensus       162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~  193 (668)
T PLN02260        162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPN  193 (668)
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECcccccCcC
Confidence            555555555555666677766667 4588876

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=97.95  E-value=0.00015  Score=65.19  Aligned_cols=171  Identities=16%  Similarity=0.055  Sum_probs=96.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhc-CCCCCeEEEE----eCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~-~~~~~~v~~~----~~~~d~~~a~~~aDiVI   93 (258)
                      .++|.|+||+|++|++++..|...|.  +|++.+++..... ...+.. ......+..+    ....++.++++++|+||
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            35899999999999999999999887  8888877654211 111111 0001122211    11234566788999999


Q ss_pred             EcCCCCCCC-C-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH--------HHHHHHHHHhCCCC-----
Q 025075           94 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVFKKAGTYD-----  158 (258)
Q Consensus        94 i~ag~~~~~-g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~--------~i~t~~~~~~~~~~-----  158 (258)
                      ++||..... . ..-.+.+..|+.....+.+.+.++.....|+++|.-.....        ..+++    ....+     
T Consensus        83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E----~~~~~p~~~~  158 (325)
T PLN02989         83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDE----TFFTNPSFAE  158 (325)
T ss_pred             EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCc----CCCCchhHhc
Confidence            999853211 1 11234567888888888888877532234554443111000        00011    00011     


Q ss_pred             -CCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          159 -PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       159 -~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                       +....|.+.+...++...+++..+++..-++ +.++|..
T Consensus       159 ~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~  198 (325)
T PLN02989        159 ERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPI  198 (325)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCC
Confidence             1234555555555555556677787776677 5688865

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=97.95  E-value=0.00023  Score=64.91  Aligned_cols=173  Identities=18%  Similarity=0.090  Sum_probs=94.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeC----CCchHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLG----QPQLENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiV   92 (258)
                      ..|||.|+||+|++|++++..|...|.  +|++.+++......  .++..   ...+..+.+    ..++.+++++.|+|
T Consensus         9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V   83 (353)
T PLN02896          9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV   83 (353)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence            346999999999999999999998887  88888876532211  11211   112222211    12345667889999


Q ss_pred             EEcCCCCCCC---C-Cchhh-----HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH--------HHHHHHH----
Q 025075           93 IIPAGVPRKP---G-MTRDD-----LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVF----  151 (258)
Q Consensus        93 Ii~ag~~~~~---g-~~r~d-----~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~--------~i~t~~~----  151 (258)
                      |++|+.....   . .+-.+     .+..|+.....+++.+.++..-..++++|.-.-...        ..+.+-.    
T Consensus        84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~  163 (353)
T PLN02896         84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI  163 (353)
T ss_pred             EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence            9999864211   1 11122     233345667778888776532234554443110000        0001100    


Q ss_pred             H-HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          152 K-KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       152 ~-~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      . .....++.-..|.+.+...++....++..+++..-++ ..|+|.+
T Consensus       164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  210 (353)
T PLN02896        164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPF  210 (353)
T ss_pred             HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCC
Confidence            0 0000112225566666666666667777788777777 4588875

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.94  E-value=0.00015  Score=67.06  Aligned_cols=149  Identities=21%  Similarity=0.162  Sum_probs=84.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ||||.|||| |+||+.++..|++.+- .+|.+-|+..++ ..+.+..+.......-+......+.+.+++.|+||.++..
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~   78 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPP   78 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCc
Confidence            579999998 9999999999999885 599999998652 2222222211111111112223567889999999999742


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE--e----eccHHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV--T----MLDVVR  172 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~--t----~lds~R  172 (258)
                      ..            +    ..+++.+.+.+-  -++-.|+-.+.. +-+-+.+++++      +.++  |    -++. =
T Consensus        79 ~~------------~----~~i~ka~i~~gv--~yvDts~~~~~~-~~~~~~a~~Ag------it~v~~~G~dPGi~n-v  132 (389)
T COG1748          79 FV------------D----LTILKACIKTGV--DYVDTSYYEEPP-WKLDEEAKKAG------ITAVLGCGFDPGITN-V  132 (389)
T ss_pred             hh------------h----HHHHHHHHHhCC--CEEEcccCCchh-hhhhHHHHHcC------eEEEcccCcCcchHH-H
Confidence            21            1    234444444332  355566655542 33344444433      3333  1    2332 2


Q ss_pred             HHHHHHHHhCCCCCceeEEE--EecC
Q 025075          173 ANTFVAEVLGLDPRDVDVPV--VGGH  196 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v--~G~h  196 (258)
                      +-...++++.-..++++.++  +|+|
T Consensus       133 ~a~~a~~~~~~~i~si~iy~g~~g~~  158 (389)
T COG1748         133 LAAYAAKELFDEIESIDIYVGGLGEH  158 (389)
T ss_pred             HHHHHHHHhhccccEEEEEEecCCCC
Confidence            34445555554666777664  4566

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.94  E-value=8.6e-05  Score=65.16  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ||||+|||+ |.+|..++..|...+. ..++.++|++++....  +.+. .  .+..   ..+..+.++++|+||++.. 
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~--~~~~-~--g~~~---~~~~~~~~~~advVil~v~-   71 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEKRAA--LAEE-Y--GVRA---ATDNQEAAQEADVVVLAVK-   71 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHH--HHHh-c--CCee---cCChHHHHhcCCEEEEEcC-
Confidence            679999998 9999999999887762 1379999987643221  2221 0  1111   2345567899999999861 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                         +            ..++++++.+..+. +..|+.++|.+.
T Consensus        72 ---~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~   98 (267)
T PRK11880         72 ---P------------QVMEEVLSELKGQL-DKLVVSIAAGVT   98 (267)
T ss_pred             ---H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence               1            12344555554443 457777888765

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=97.93  E-value=0.00019  Score=64.36  Aligned_cols=105  Identities=15%  Similarity=0.092  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcC-CCCCeEEEEe----CCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~-~~~~~v~~~~----~~~d~~~a~~~aDiVIi   94 (258)
                      ++|.|+||+|++|++++..|...|.  +|++..++... .....+... .....+..+.    ...++.++++++|+||+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            5899999999999999999998887  78766555432 111222111 0111222211    12345677889999999


Q ss_pred             cCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhh
Q 025075           95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC  127 (258)
Q Consensus        95 ~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~  127 (258)
                      +|+..... .....+++..|+.....+++.+.+.
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~  117 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKET  117 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence            99753211 1122345677898888898888765

>PRK07680 late competence protein ComER; Validated

Probab=97.87  E-value=0.00017  Score=63.78  Aligned_cols=97  Identities=19%  Similarity=0.258  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+|||+ |.+|.+++..|...+.+  .+|.++|++.+....  +.+.. . .+..   ..+..+.++++|+||++.  
T Consensus         1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~--~~~~~-~-g~~~---~~~~~~~~~~aDiVilav--   70 (273)
T PRK07680          1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAKAYH--IKERY-P-GIHV---AKTIEEVISQSDLIFICV--   70 (273)
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHH--HHHHc-C-CeEE---ECCHHHHHHhCCEEEEec--
Confidence            58999998 99999999998887742  479999987643222  22211 1 1221   234567789999999996  


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd  141 (258)
                        +|.            .+.++++.+..+ .++.+++.++|++.
T Consensus        71 --~p~------------~~~~vl~~l~~~l~~~~~iis~~ag~~  100 (273)
T PRK07680         71 --KPL------------DIYPLLQKLAPHLTDEHCLVSITSPIS  100 (273)
T ss_pred             --CHH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence              111            134444555544 35678888999876

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.87  E-value=0.00012  Score=65.19  Aligned_cols=86  Identities=21%  Similarity=0.240  Sum_probs=57.5

Q ss_pred             HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchH
Q 025075            6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLE   83 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~   83 (258)
                      =|.+..++.....+..||+|+|+ |.+|.++++.|...|. .+|.++|++.++++  +.++.+...  ..... ...++.
T Consensus       113 G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G~-~~I~I~nR~~~ka~~la~~l~~~~~--~~~~~-~~~~~~  187 (284)
T PRK12549        113 GFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLGV-ERLTIFDVDPARAAALADELNARFP--AARAT-AGSDLA  187 (284)
T ss_pred             HHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHhhCC--CeEEE-eccchH
Confidence            36666655432334468999998 9999999999998885 58999999876433  334433221  12211 123445


Q ss_pred             hhhCCCCEEEEcC
Q 025075           84 NALTGMDLVIIPA   96 (258)
Q Consensus        84 ~a~~~aDiVIi~a   96 (258)
                      +.++++|+||.+.
T Consensus       188 ~~~~~aDiVInaT  200 (284)
T PRK12549        188 AALAAADGLVHAT  200 (284)
T ss_pred             hhhCCCCEEEECC
Confidence            6789999999983

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.87  E-value=0.00042  Score=61.44  Aligned_cols=99  Identities=18%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||+|||+ |.+|.+++..|...+..  .+|.+++++... ....+... .. .+..   +.+..+.++++|+||++..
T Consensus         1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~-~~-~~~~---~~~~~e~~~~aDvVilavp   73 (277)
T PRK06928          1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK-YP-TVEL---ADNEAEIFTKCDHSFICVP   73 (277)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH-cC-CeEE---eCCHHHHHhhCCEEEEecC
Confidence            469999998 99999999999887732  489999986531 11122211 11 1221   2355677899999999862


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                          |            ..+.++++.+..+- ++..++.+.|-++
T Consensus        74 ----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~  102 (277)
T PRK06928         74 ----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVS  102 (277)
T ss_pred             ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                1            12445566665543 4567887888877

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=97.85  E-value=8.6e-05  Score=66.31  Aligned_cols=99  Identities=17%  Similarity=0.159  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~   98 (258)
                      |||.|+||+|++|++++..|...|   +|+.+|+.... ...|+.+            ...+.+.++  +.|+||++|+.
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~~-~~~Dl~d------------~~~~~~~~~~~~~D~Vih~Aa~   64 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHSTD-YCGDFSN------------PEGVAETVRKIRPDVIVNAAAH   64 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC---CEEEecccccc-ccCCCCC------------HHHHHHHHHhcCCCEEEECCcc
Confidence            589999999999999999988877   47777764310 0011111            112345565  58999999875


Q ss_pred             CCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ....  ..........|+.....+++.+.+.+.  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S  103 (299)
T PRK09987         65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS  103 (299)
T ss_pred             CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            3211  112233456799999999999988753  444443

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.84  E-value=0.0004  Score=65.64  Aligned_cols=66  Identities=23%  Similarity=0.317  Sum_probs=47.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+.|.+|..++..|...|+  +|.++|+++....  ++....   .+.   .+.++.+++++||+||++.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~~--~~a~~~---gv~---~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKGK--EVAKEL---GVE---YANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHHH--HHHHHc---CCe---eccCHHHHhccCCEEEEec
Confidence            5899998559999999999998887  8999998764321  111110   111   1345667899999999986

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.84  E-value=0.00014  Score=64.48  Aligned_cols=64  Identities=22%  Similarity=0.264  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||. |.+|.+++..|...|+  +|.+||+++... .+.+.   .   .+.  ..+++. +++++||+||++.
T Consensus         1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~---g---~~~--~~~~~~-~~~~~aDlVilav   65 (279)
T PRK07417          1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIER---G---LVD--EASTDL-SLLKDCDLVILAL   65 (279)
T ss_pred             CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHC---C---Ccc--cccCCH-hHhcCCCEEEEcC
Confidence            58999997 9999999999998887  899999876421 12111   1   011  112343 5689999999996

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.83  E-value=0.0002  Score=64.15  Aligned_cols=95  Identities=17%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+|||. |.+|.+++..|...|+  +|.+||+++++...  +...... .   .....++.+.++++|+||++..   
T Consensus         1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~~~~--l~~~g~~-~---~~s~~~~~~~~~~~dvIi~~vp---   68 (298)
T TIGR00872         1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDAVKA--MKEDRTT-G---VANLRELSQRLSAPRVVWVMVP---   68 (298)
T ss_pred             CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHcCCc-c---cCCHHHHHhhcCCCCEEEEEcC---
Confidence            58999998 9999999999999887  89999998753222  2221110 0   1111233345678999999852   


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                       ++            .++++++.+.... |+.+++..||..
T Consensus        69 -~~------------~~~~v~~~l~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        69 -HG------------IVDAVLEELAPTLEKGDIVIDGGNSY   96 (298)
T ss_pred             -ch------------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence             11            2344445555543 566777777753

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.83  E-value=0.00013  Score=67.63  Aligned_cols=54  Identities=19%  Similarity=0.345  Sum_probs=44.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++||+|||+.|.+|.+++..|...|+  +|.+||++..                      .+.++++++||+||++.
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~----------------------~~~~~~~~~aDlVilav  150 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW----------------------DRAEDILADAGMVIVSV  150 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc----------------------hhHHHHHhcCCEEEEeC
Confidence            447999999459999999999999887  8999997420                      12356789999999996

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=97.83  E-value=0.00024  Score=66.05  Aligned_cols=115  Identities=16%  Similarity=0.100  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh----HHHHHhcCCCCCeEE--EEeCCCchHhhhC---
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG----VTADISHMDTGAVVR--GFLGQPQLENALT---   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g----~~~dl~~~~~~~~v~--~~~~~~d~~~a~~---   87 (258)
                      ..+++||.|+||+|++|++++..|..+|.  +|++++++....    ...++........+.  ++....++.++++   
T Consensus        57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~  134 (390)
T PLN02657         57 EPKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEG  134 (390)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhC
Confidence            34557999999999999999999998887  899999875311    011111110111111  1111223555566   


Q ss_pred             -CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           88 -GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                       ++|+||.+++.+...   ..+....|......+++.+++.+-. .++.+|
T Consensus       135 ~~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iS  181 (390)
T PLN02657        135 DPVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAK-HFVLLS  181 (390)
T ss_pred             CCCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence             599999988743211   1233456777777888888776543 344444

>PLN02240 UDP-glucose 4-epimerase

Probab=97.80  E-value=0.0003  Score=63.70  Aligned_cols=115  Identities=18%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hh---HHHHHhcCCCCCeEEEE----eCCCchHhhhC--
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTGAVVRGF----LGQPQLENALT--   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g---~~~dl~~~~~~~~v~~~----~~~~d~~~a~~--   87 (258)
                      +++||.|+||+|++|++++..|...|.  +|+++|+...  ..   ...++.... ...+..+    ....++.++++  
T Consensus         4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~l~~~~~~~   80 (352)
T PLN02240          4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDL-GDNLVFHKVDLRDKEALEKVFAST   80 (352)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhccc-CccceEEecCcCCHHHHHHHHHhC
Confidence            446999999999999999999998886  8999986432  11   111111100 0111111    11123334444  


Q ss_pred             CCCEEEEcCCCCCC-CC-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           88 GMDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-~g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++|+||++++.... .. ....+.+..|+.....+++.+.+.+.. .++.+|
T Consensus        81 ~~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  131 (352)
T PLN02240         81 RFDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSS  131 (352)
T ss_pred             CCCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            68999999886421 11 233557788999899999888776533 344444

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.79  E-value=0.00025  Score=63.69  Aligned_cols=70  Identities=24%  Similarity=0.223  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+||+|||+ |.+|.+++..|...|...+|.+||++++....  +.....  ... .  ..++++++++||+||++..
T Consensus         6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~--a~~~g~--~~~-~--~~~~~~~~~~aDvViiavp   75 (307)
T PRK07502          6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRAR--ARELGL--GDR-V--TTSAAEAVKGADLVILCVP   75 (307)
T ss_pred             CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHH--HHhCCC--Cce-e--cCCHHHHhcCCCEEEECCC
Confidence            368999997 99999999999888765589999997642111  111111  111 1  2345678899999999973

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.79  E-value=0.00018  Score=63.05  Aligned_cols=95  Identities=15%  Similarity=0.253  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~-D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||++||. |.+|.+++..|...++  ..+|+.+ |+++++..  .+...    .+..   ..+..++++++|+||++. 
T Consensus         1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~--~~~~~----g~~~---~~~~~e~~~~aDvVil~v-   69 (266)
T PLN02688          1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPARRD--VFQSL----GVKT---AASNTEVVKSSDVIILAV-   69 (266)
T ss_pred             CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHH--HHHHc----CCEE---eCChHHHHhcCCEEEEEE-
Confidence            68999997 9999999999988775  3478888 77654322  22221    1221   234567789999999997 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd  141 (258)
                         +|.            .++++.+.+..+ .|+.++|..++...
T Consensus        70 ---~~~------------~~~~vl~~l~~~~~~~~~iIs~~~g~~   99 (266)
T PLN02688         70 ---KPQ------------VVKDVLTELRPLLSKDKLLVSVAAGIT   99 (266)
T ss_pred             ---CcH------------HHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence               121            133444455444 35666776666665

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=97.78  E-value=0.00018  Score=65.86  Aligned_cols=110  Identities=21%  Similarity=0.242  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEE----EeCCCchHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRG----FLGQPQLENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~----~~~~~d~~~a~~~aDiVI   93 (258)
                      ++.++.|+||+|++|.+++..|.+.+...+|.++|..... ....|.... ....+..    +....++..+++++ .|+
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv   80 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV   80 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence            4568999999999999999999988866699999987641 111111110 0112221    12234567889999 666


Q ss_pred             EcCCC--CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075           94 IPAGV--PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus        94 i~ag~--~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      +++..  +......|.....-|++-.+.+.+.+.+.+-+
T Consensus        81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~  119 (361)
T KOG1430|consen   81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVK  119 (361)
T ss_pred             EeccccCccccccchhhheeecchhHHHHHHHHHHhCCC
Confidence            65432  22222236666778999999999999987643

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.78  E-value=0.00023  Score=59.08  Aligned_cols=105  Identities=15%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+||||+|.+|+.++..+..+|+  |++.+-+++.+-.+.  ....  ..-.++...+.+.+++.|-|+||.+.|.+.
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~--~~~~--i~q~Difd~~~~a~~l~g~DaVIsA~~~~~   74 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAAR--QGVT--ILQKDIFDLTSLASDLAGHDAVISAFGAGA   74 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhcccc--ccce--eecccccChhhhHhhhcCCceEEEeccCCC
Confidence            7999999999999999999999999  999998876532110  1100  011111112334578999999999987553


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ++..     ..-.+-...+...++... ...++++..
T Consensus        75 -~~~~-----~~~~k~~~~li~~l~~ag-v~RllVVGG  105 (211)
T COG2910          75 -SDND-----ELHSKSIEALIEALKGAG-VPRLLVVGG  105 (211)
T ss_pred             -CChh-----HHHHHHHHHHHHHHhhcC-CeeEEEEcC
Confidence             2221     111233455555555433 456776754

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=97.78  E-value=5.5e-05  Score=64.14  Aligned_cols=165  Identities=17%  Similarity=0.127  Sum_probs=95.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhCCC--CEEEEcCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALTGM--DLVIIPAGV   98 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~~a--DiVIi~ag~   98 (258)
                      |.|+||+|++|++++..|..+|.  +++.+.............. ..  ...  .+....++.+.+++.  |.||.+++.
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~-~~--~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~   75 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKL-NV--EFVIGDLTDKEQLEKLLEKANIDVVIHLAAF   75 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHT-TE--EEEESETTSHHHHHHHHHHHTESEEEEEBSS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccc-eE--EEEEeeccccccccccccccCceEEEEeecc
Confidence            78999999999999999999987  6555555443221111111 00  110  011122455677777  999999976


Q ss_pred             CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH--HHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075           99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA--EVFKKAGTYDPKKLLGVTMLDVVRAN  174 (258)
Q Consensus        99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t--~~~~~~~~~~~~kviG~t~lds~R~~  174 (258)
                      ..  .......+....|+...+.+.+.+.+.+. ..++.++. ..+  +-..  .-+.....+.+....|.+.....++.
T Consensus        76 ~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~~i~~sS-~~~--y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~  151 (236)
T PF01370_consen   76 SSNPESFEDPEEIIEANVQGTRNLLEAAREAGV-KRFIFLSS-ASV--YGDPDGEPIDEDSPINPLSPYGASKRAAEELL  151 (236)
T ss_dssp             SSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT-SEEEEEEE-GGG--GTSSSSSSBETTSGCCHSSHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-cccccccc-ccc--cccccccccccccccccccccccccccccccc
Confidence            42  11124456788899999999999999877 34444443 210  0000  00000000111122333444445566


Q ss_pred             HHHHHHhCCCCCcee-EEEEecC
Q 025075          175 TFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       175 ~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..++++.+++...++ ..++|.+
T Consensus       152 ~~~~~~~~~~~~~~R~~~vyG~~  174 (236)
T PF01370_consen  152 RDYAKKYGLRVTILRPPNVYGPG  174 (236)
T ss_dssp             HHHHHHHTSEEEEEEESEEESTT
T ss_pred             ccccccccccccccccccccccc
Confidence            666777788888888 4688877

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.77  E-value=0.0003  Score=62.34  Aligned_cols=99  Identities=15%  Similarity=0.168  Sum_probs=62.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +.|||+|||+ |.+|.+++..|...+.  ..+|..+|++..+ ...++... +  .+..   +.+..+.+++||+||++.
T Consensus         2 ~~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~-~~~~l~~~-~--g~~~---~~~~~e~~~~aDvVilav   73 (279)
T PRK07679          2 SIQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNET-RLQELHQK-Y--GVKG---THNKKELLTDANILFLAM   73 (279)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCHH-HHHHHHHh-c--CceE---eCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999988762  2488999875421 12222221 1  1221   234567789999999996


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd  141 (258)
                          +|..            +.++++.+..+ .++.++|.+.+.+.
T Consensus        74 ----~p~~------------~~~vl~~l~~~~~~~~liIs~~aGi~  103 (279)
T PRK07679         74 ----KPKD------------VAEALIPFKEYIHNNQLIISLLAGVS  103 (279)
T ss_pred             ----CHHH------------HHHHHHHHHhhcCCCCEEEEECCCCC
Confidence                2221            22333444443 35667777667665

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.77  E-value=0.00026  Score=65.10  Aligned_cols=68  Identities=21%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||. |.+|.+++..|...|+  ++.++|.+........-.....   ..  ..++++.+++++||+||++.
T Consensus         1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~---~~--~~~~~~~~~~~~aDlVilav   68 (359)
T PRK06545          1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV---ID--ELAADLQRAAAEADLIVLAV   68 (359)
T ss_pred             CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC---Cc--ccccCHHHHhcCCCEEEEeC
Confidence            37999998 9999999999999887  7888998775322111111111   11  11346678899999999996

>PLN02256 arogenate dehydrogenase

Probab=97.76  E-value=0.0008  Score=60.60  Aligned_cols=69  Identities=17%  Similarity=0.162  Sum_probs=48.2

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEE
Q 025075           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVI   93 (258)
Q Consensus        15 ~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVI   93 (258)
                      .++.+++||+|||+ |.+|..++..|...|.  +|..+|.+.....+.++       .+..   ..+.++.+ .++|+||
T Consensus        31 ~~~~~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~-------gv~~---~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         31 LEKSRKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL-------GVSF---FRDPDDFCEEHPDVVL   97 (304)
T ss_pred             hccCCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc-------CCee---eCCHHHHhhCCCCEEE
Confidence            34667789999997 9999999999988775  89999987532112111       1111   23455555 4799999


Q ss_pred             EcC
Q 025075           94 IPA   96 (258)
Q Consensus        94 i~a   96 (258)
                      ++.
T Consensus        98 lav  100 (304)
T PLN02256         98 LCT  100 (304)
T ss_pred             Eec
Confidence            986

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=97.76  E-value=0.00017  Score=63.45  Aligned_cols=95  Identities=23%  Similarity=0.305  Sum_probs=66.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC--CEEEEcCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP   99 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a--DiVIi~ag~~   99 (258)
                      ||.|+||+|++|++++..|...|.  +|+++++..     .|+.+            ..++.++++++  |+||.+++..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~------------~~~~~~~~~~~~~d~vi~~a~~~   61 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTD------------PEALERLLRAIRPDAVVNTAAYT   61 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCC------------HHHHHHHHHhCCCCEEEECCccc
Confidence            689999999999999999998887  899887641     12221            12345667766  9999999754


Q ss_pred             CCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075          100 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus       100 ~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ....  ......+..|+.....+++.+.+...  .++.+|
T Consensus        62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S   99 (287)
T TIGR01214        62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS   99 (287)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            3221  22345677888889999988877653  344444

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK07201 short chain dehydrogenase; Provisional

Probab=97.76  E-value=0.00042  Score=68.26  Aligned_cols=108  Identities=14%  Similarity=0.111  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--------CchHhhhCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--------PQLENALTG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~--~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--------~d~~~a~~~   88 (258)
                      |||.|+||+|++|++++..|..  .+.  +|.+++++.......++........+..+.+  +        .++ +.+++
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~-~~l~~   77 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADI-AELGD   77 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHH-HHhcC
Confidence            5899999999999999999884  554  8999998653222222211100011221111  0        112 23489


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcE
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT  132 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~  132 (258)
                      +|+||++|+.... .....+....|+.-.+.+++.+.+...+.+
T Consensus        78 ~D~Vih~Aa~~~~-~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~  120 (657)
T PRK07201         78 IDHVVHLAAIYDL-TADEEAQRAANVDGTRNVVELAERLQAATF  120 (657)
T ss_pred             CCEEEECceeecC-CCCHHHHHHHHhHHHHHHHHHHHhcCCCeE
Confidence            9999999975322 223345667899999999998887653333

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.76  E-value=0.00058  Score=59.03  Aligned_cols=98  Identities=10%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCC-CChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +.+||+|||+ |.+|.+++..|...+.  ..++..++++ .++.  .++.+..   .+..   +.|+++.++++|+||++
T Consensus         3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~---~~~~---~~~~~~~~~~~DiViia   73 (245)
T PRK07634          3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKL--DQLQARY---NVST---TTDWKQHVTSVDTIVLA   73 (245)
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHH--HHHHHHc---CcEE---eCChHHHHhcCCEEEEe
Confidence            3579999998 9999999998877652  3457778764 2222  2222211   1221   24567788999999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..    +.            ..+++++.+..+-++.+|+.++..++
T Consensus        74 vp----~~------------~~~~v~~~l~~~~~~~~vis~~~gi~  103 (245)
T PRK07634         74 MP----PS------------AHEELLAELSPLLSNQLVVTVAAGIG  103 (245)
T ss_pred             cC----HH------------HHHHHHHHHHhhccCCEEEEECCCCC
Confidence            52    11            12334444443323446776777666

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.73  E-value=0.00017  Score=56.60  Aligned_cols=101  Identities=24%  Similarity=0.268  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..+||+|||+ |.||.+++..|...|+  +|.-+-... ......+.+....  ..    ..++.+.++++|++|++.  
T Consensus         9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~~~--~~----~~~~~~~~~~aDlv~iav--   76 (127)
T PF10727_consen    9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFIGA--GA----ILDLEEILRDADLVFIAV--   76 (127)
T ss_dssp             ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC--TT-----------TTGGGCC-SEEEE-S--
T ss_pred             CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccccc--cc----ccccccccccCCEEEEEe--
Confidence            3479999998 9999999999999997  666553322 1122223332111  11    123457899999999996  


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh--C-CCcEEEEec--CCCCCcHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLIS--NPVNSTVP  145 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~-p~a~viv~t--NPvd~~~~  145 (258)
                         |+.           .+.++++.|.++  . |+-+|+=.|  -++++|.+
T Consensus        77 ---pDd-----------aI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p  114 (127)
T PF10727_consen   77 ---PDD-----------AIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP  114 (127)
T ss_dssp             ----CC-----------HHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHH
T ss_pred             ---chH-----------HHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhh
Confidence               221           256788888876  2 444444343  35665544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.73  E-value=0.00025  Score=62.79  Aligned_cols=97  Identities=13%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+||+|||+ |.+|++++..|...++  ..+|..+|++++..  ..+.+..   .+..   .++..+.+++||+||++. 
T Consensus         2 ~~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~--~~l~~~~---g~~~---~~~~~e~~~~aDiIiLav-   71 (272)
T PRK12491          2 NKQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVSNL--KNASDKY---GITI---TTNNNEVANSADILILSI-   71 (272)
T ss_pred             CCeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHHHH--HHHHHhc---CcEE---eCCcHHHHhhCCEEEEEe-
Confidence            358999998 9999999999988875  34799999875432  2222111   1221   134456789999999997 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd  141 (258)
                         +|..            +.++.+.+..+ .++.+++-+.-.++
T Consensus        72 ---kP~~------------~~~vl~~l~~~~~~~~lvISi~AGi~  101 (272)
T PRK12491         72 ---KPDL------------YSSVINQIKDQIKNDVIVVTIAAGKS  101 (272)
T ss_pred             ---ChHH------------HHHHHHHHHHhhcCCcEEEEeCCCCc
Confidence               3321            23344444443 35567776666665

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=97.72  E-value=0.00029  Score=61.12  Aligned_cols=113  Identities=16%  Similarity=0.098  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC---CchHhhh-CCCCEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENAL-TGMDLV   92 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~---~d~~~a~-~~aDiV   92 (258)
                      -.+++||.|+||+|++|+.++..|...|.  +|+.+.++....... +.. .....+.....+   .++.+.+ .++|+|
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~-~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v   89 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ-DPSLQIVRADVTEGSDKLVEAIGDDSDAV   89 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc-CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence            34567999999999999999999988887  788877665322111 111 001111111111   2344566 689999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      |+++|.....+.  .+....|..-...+++.+.+.... .++.+
T Consensus        90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~-~iV~i  130 (251)
T PLN00141         90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVT-RFILV  130 (251)
T ss_pred             EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCC-EEEEE
Confidence            998875422111  111233444456667777665543 34433

>PRK08267 short chain dehydrogenase; Provisional

Probab=97.71  E-value=0.00039  Score=60.26  Aligned_cols=118  Identities=22%  Similarity=0.250  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhC--------CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALT--------GM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~--------~a   89 (258)
                      |+++.|+||+|.+|..++..|+..|.  +|+++|++......  .++.........-++....++.+.++        ..
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            34799999999999999999999887  89999987642211  11111111000001111112233332        45


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhh---hCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~---~~p~a~viv~tNP  139 (258)
                      |+||.++|......   .+   -...+..|+.-...+.+.+.+   ..+.+.+++++..
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~  137 (260)
T PRK08267         79 DVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA  137 (260)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence            99999998753221   11   223456666644445444432   2344566666543

>PRK05865 hypothetical protein; Provisional

Probab=97.71  E-value=0.00035  Score=70.81  Aligned_cols=104  Identities=17%  Similarity=0.153  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||.|+||+|++|++++..|...|+  +|+.+|++....    +. .... .+. ++....++.++++++|+||++|+..
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~-~~v~-~v~gDL~D~~~l~~al~~vD~VVHlAa~~   72 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WP-SSAD-FIAADIRDATAVESAMTGADVVAHCAWVR   72 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----cc-cCce-EEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence            5899999999999999999998887  899999764211    10 0110 111 1111234566789999999998643


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      . +      ....|+.....+++.+.+.+.. .++.+|.+.
T Consensus        73 ~-~------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~  105 (854)
T PRK05865         73 G-R------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH  105 (854)
T ss_pred             c-c------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence            2 1      3466777778888888776533 555566654

>PRK08643 acetoin reductase; Validated

Probab=97.69  E-value=0.0034  Score=54.15  Aligned_cols=116  Identities=19%  Similarity=0.234  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.+...  .+..+. .-+|   +.+.+       .
T Consensus         3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDGG--KAIAVKADVSDRDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999887  899999876421  1223332111  111111 0111   12222       3


Q ss_pred             CCCEEEEcCCCCCC-CC-C-ch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRK-PG-M-TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-~g-~-~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      +.|+||+++|.... +- . +.   ...+..|+.-    .+.+.+.+.+..+++.++++|...
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~  141 (256)
T PRK08643         79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQA  141 (256)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccc
Confidence            68999999986432 11 1 11   1234445543    344445554444556777776543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.69  E-value=0.00044  Score=60.97  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++||++||+ |.+|++++..|...+.  ..+|...|+++++..  ++... ++...     ++|..++.+.+|+||++. 
T Consensus         1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~--~l~~~-~g~~~-----~~~~~~~~~~advv~Lav-   70 (266)
T COG0345           1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKRA--ALAAE-YGVVT-----TTDNQEAVEEADVVFLAV-   70 (266)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHH--HHHHH-cCCcc-----cCcHHHHHhhCCEEEEEe-
Confidence            479999998 9999999999998883  258888888765332  23322 11111     345568899999999997 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                         ||-            .+.++++.++...++-+||.+.=.+.
T Consensus        71 ---KPq------------~~~~vl~~l~~~~~~~lvISiaAGv~   99 (266)
T COG0345          71 ---KPQ------------DLEEVLSKLKPLTKDKLVISIAAGVS   99 (266)
T ss_pred             ---ChH------------hHHHHHHHhhcccCCCEEEEEeCCCC
Confidence               552            24667777776445667777776666

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.67  E-value=0.00043  Score=55.24  Aligned_cols=118  Identities=20%  Similarity=0.231  Sum_probs=72.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC-----CCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~-----~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+|+|+ |.+|..++..|.+.+.  +|.++++.. ....+.-...     .....+.......+..+..+.+|+||+|.-
T Consensus         1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            789998 9999999999998887  899999865 2222111111     100111111111121246789999999962


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE-Eee
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTM  167 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG-~t~  167 (258)
                          ..+            ..+.++.++.+. |++.++.+-|=++.    . +.+.+.  +|+.++++ ++.
T Consensus        77 ----a~~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~----~-~~l~~~--~~~~~v~~g~~~  125 (151)
T PF02558_consen   77 ----AYQ------------LEQALQSLKPYLDPNTTIVSLQNGMGN----E-EVLAEY--FPRPRVLGGVTT  125 (151)
T ss_dssp             ----GGG------------HHHHHHHHCTGEETTEEEEEESSSSSH----H-HHHHCH--STGSGEEEEEEE
T ss_pred             ----ccc------------hHHHHHHHhhccCCCcEEEEEeCCCCc----H-HHHHHH--cCCCcEEEEEEe
Confidence                211            245666677775 67788889999883    2 333333  66778874 444

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.67  E-value=0.00064  Score=60.49  Aligned_cols=66  Identities=20%  Similarity=0.269  Sum_probs=49.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +||++||. |.+|+.++..|...|+  ++..||+++++.. ..+.....  ..     ..++.++.+++|+||.+..
T Consensus         1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka~-~~~~~~Ga--~~-----a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKAA-ELLAAAGA--TV-----AASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhhh-HHHHHcCC--cc-----cCCHHHHHHhCCEEEEecC
Confidence            48999997 9999999999999998  9999999876532 22222111  11     1344689999999999863

>PLN02686 cinnamoyl-CoA reductase

Probab=97.65  E-value=0.00033  Score=64.54  Aligned_cols=177  Identities=13%  Similarity=0.082  Sum_probs=94.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcC---C-CCCeEEEE----eCCCchHhhhC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM---D-TGAVVRGF----LGQPQLENALT   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~---~-~~~~v~~~----~~~~d~~~a~~   87 (258)
                      ..++++|.|+||+|++|++++..|+..|.  +|+++..+.... ...++...   . ....+..+    ....++.++++
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~  127 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD  127 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence            35567899999999999999999999987  887766544321 11122100   0 00012211    11223566788


Q ss_pred             CCCEEEEcCCCCCCCCC--chhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC-CCc--------HHHHHHHHH--H
Q 025075           88 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV-NST--------VPIAAEVFK--K  153 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~--~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv-d~~--------~~i~t~~~~--~  153 (258)
                      ++|.||.+++.....+.  ....+...|+.-...+++.+.+. +.+ .+|.+|... ...        -.++++-.+  .
T Consensus       128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~  206 (367)
T PLN02686        128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVWRQNYPHDLPPVIDEESWSDE  206 (367)
T ss_pred             hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcccccCCCCCCcccCCCCCCCh
Confidence            99999998865322221  12344566888888888888775 333 344333311 000        000100000  0


Q ss_pred             hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ....++...+|.+.+...++-..+++..|++..-++ +.|+|..
T Consensus       207 ~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~  250 (367)
T PLN02686        207 SFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPG  250 (367)
T ss_pred             hhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCC
Confidence            000011112334444445555555666777777777 5688875

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.65  E-value=0.00089  Score=56.67  Aligned_cols=35  Identities=31%  Similarity=0.404  Sum_probs=31.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +..||+|+|+ |.+|+.++..|+..|+ ++|+|+|.+
T Consensus        20 ~~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGL-GGLGSNVAINLARAGI-GKLILVDFD   54 (200)
T ss_pred             hCCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCC
Confidence            3458999998 9999999999999986 689999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.65  E-value=0.00034  Score=55.97  Aligned_cols=87  Identities=22%  Similarity=0.205  Sum_probs=57.8

Q ss_pred             hHHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCch
Q 025075            5 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQL   82 (258)
Q Consensus         5 ~~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~   82 (258)
                      .=|.++.++..-..+.++|+|+|+ |.+|..++..|...+ ..++.++|++.++...  .++....  ....    ..++
T Consensus         4 ~g~~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~~--~~~~----~~~~   75 (155)
T cd01065           4 LGFVRALEEAGIELKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGELG--IAIA----YLDL   75 (155)
T ss_pred             HHHHHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhcc--ccee----ecch
Confidence            346777776543355679999998 999999999998876 3589999997653221  1222110  0011    1244


Q ss_pred             HhhhCCCCEEEEcCCCC
Q 025075           83 ENALTGMDLVIIPAGVP   99 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~   99 (258)
                      .+.++++|+||++...+
T Consensus        76 ~~~~~~~Dvvi~~~~~~   92 (155)
T cd01065          76 EELLAEADLIINTTPVG   92 (155)
T ss_pred             hhccccCCEEEeCcCCC
Confidence            56689999999997544

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.65  E-value=0.00057  Score=60.20  Aligned_cols=119  Identities=18%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEE----eCCCchHhhh---
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF----LGQPQLENAL---   86 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~---   86 (258)
                      ++++++.+.|+|||+.+|..++..|+.+|.  +|+|+.++++  ...+.++.+.. ...+..+    ....+++...   
T Consensus         2 ~~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l   78 (265)
T COG0300           2 GPMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDEL   78 (265)
T ss_pred             CCCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHH
Confidence            345667899999999999999999999998  9999999876  33444555432 1112111    1122222111   


Q ss_pred             ----CCCCEEEEcCCCCCCCC------CchhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           87 ----TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ----~~aDiVIi~ag~~~~~g------~~r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                          -..|+.|..||......      .+-.+++.-|+--+    +.+.+.+.+.+ .+.||+++.
T Consensus        79 ~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S  143 (265)
T COG0300          79 KERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS  143 (265)
T ss_pred             HhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence                26999999998753221      22345667776544    45555555543 466777653

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.64  E-value=0.00027  Score=62.10  Aligned_cols=91  Identities=14%  Similarity=0.193  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..|||+|||+ |.+|++++..|...+..  .+++.+|++...     +       ....   ..+..+.++++|+||++.
T Consensus         2 ~~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav   65 (260)
T PTZ00431          2 ENIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV   65 (260)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe
Confidence            3479999998 99999999999887643  358888876431     0       0111   134456788999999985


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                          +|.            .+.++++.+..+-++..+|.+.+-++
T Consensus        66 ----kp~------------~~~~vl~~i~~~l~~~~iIS~~aGi~   94 (260)
T PTZ00431         66 ----KPD------------LAGKVLLEIKPYLGSKLLISICGGLN   94 (260)
T ss_pred             ----CHH------------HHHHHHHHHHhhccCCEEEEEeCCcc
Confidence                222            13445555554333345666777766

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=97.64  E-value=0.00052  Score=60.92  Aligned_cols=109  Identities=11%  Similarity=0.092  Sum_probs=66.3

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh----CCCCEEEEcCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL----TGMDLVIIPAGV   98 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~----~~aDiVIi~ag~   98 (258)
                      |.|+||+|++|++++..|...|. .+|+++|..........+....   ..........++...    .++|+||++|+.
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~   76 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLV---IADYIDKEDFLDRLEKGAFGKIEAIFHQGAC   76 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhhee---eeccCcchhHHHHHHhhccCCCCEEEECccc
Confidence            57999999999999999998884 3688888654321111111100   000011111122222    479999999986


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.....+..+.+..|+.....+++.+.+...  .++.+|
T Consensus        77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S  113 (314)
T TIGR02197        77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS  113 (314)
T ss_pred             cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence            4322233445677899999999998887653  344444

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK12829 short chain dehydrogenase; Provisional

Probab=97.63  E-value=0.0019  Score=55.75  Aligned_cols=38  Identities=29%  Similarity=0.490  Sum_probs=33.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+.+++.|+||+|.+|+.++..|..+|.  +|++++++++
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~~   46 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSEA   46 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            3446999999999999999999999887  8999998764

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.63  E-value=0.00041  Score=61.82  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=48.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +|||+|||. |.+|..++..|...|+  +|..||+++.....  +....    ..   ..+++++.+++||+||++.
T Consensus         2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~~~--~~~~g----~~---~~~~~~e~~~~~d~vi~~v   66 (296)
T PRK11559          2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAVAE--VIAAG----AE---TASTAKAVAEQCDVIITML   66 (296)
T ss_pred             CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence            469999997 9999999999998887  89999987643221  22111    11   1245678889999999986

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=97.62  E-value=0.0002  Score=63.22  Aligned_cols=79  Identities=18%  Similarity=0.117  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |...+||+|+||+||||++++-.|+..|+  +|...|..... ....++|....+....+. ..-....+..+|-|+..|
T Consensus        24 p~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ftg-~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLA   99 (350)
T KOG1429|consen   24 PSQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFTG-RKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLA   99 (350)
T ss_pred             CCCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEeccccc-chhhcchhccCcceeEEE-eechhHHHHHhhhhhhhc
Confidence            66678999999999999999999999996  99999976542 122233333222222111 111245789999999987


Q ss_pred             CCC
Q 025075           97 GVP   99 (258)
Q Consensus        97 g~~   99 (258)
                      ...
T Consensus       100 apa  102 (350)
T KOG1429|consen  100 APA  102 (350)
T ss_pred             cCC
Confidence            543

>PRK06924 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.00072  Score=58.11  Aligned_cols=34  Identities=18%  Similarity=0.167  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ++|.|+||+|.+|+.++..|+.+|.  +|++.++++
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~   35 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE   35 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence            4799999999999999999999887  899999875

>PRK06180 short chain dehydrogenase; Provisional

Probab=97.61  E-value=0.0017  Score=56.94  Aligned_cols=113  Identities=12%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-------CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-------TG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~   88 (258)
                      +++|.|+||+|.+|.+++..|+..|.  +|++.+++.+...  ++..... ..+..+.    ...++.+.+       ..
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~--~l~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~~   78 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAARA--DFEALHP-DRALARLLDVTDFDAIDAVVADAEATFGP   78 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHHH--HHHhhcC-CCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35799999999999999999999887  8999998764221  1221110 0111111    111122222       25


Q ss_pred             CCEEEEcCCCCCC-C--CCchh---hHHHHhHHHHHHHHHH----hhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAGIVRTLCEG----IAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~-~--g~~r~---d~~~~n~~i~~~i~~~----i~~~~p~a~viv~tN  138 (258)
                      .|+||.++|.... +  ..+..   +.+..|+.-...+.+.    +++.. .+.+|++|.
T Consensus        79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~iSS  137 (277)
T PRK06180         79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARR-RGHIVNITS  137 (277)
T ss_pred             CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CCEEEEEec
Confidence            8999999986421 1  11222   2356676655555554    33333 345666654

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.60  E-value=0.00033  Score=62.39  Aligned_cols=63  Identities=14%  Similarity=0.217  Sum_probs=46.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||+|||. |.+|+.++..|...|+  +|.+||+++++...  +.....    .   ...+..+++++||+||++.
T Consensus         1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~~~~~--~~~~g~----~---~~~~~~~~~~~aDivi~~v   63 (291)
T TIGR01505         1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPEVADE--LLAAGA----V---TAETARQVTEQADVIFTMV   63 (291)
T ss_pred             CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCCC----c---ccCCHHHHHhcCCEEEEec
Confidence            5999998 9999999999999887  89999987643221  222211    1   1235568899999999986

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.60  E-value=0.0009  Score=57.74  Aligned_cols=115  Identities=16%  Similarity=0.226  Sum_probs=66.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.++++..  ....++.+..  ..+..+.. -+|   +++++       
T Consensus         7 ~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          7 GKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  89999988742  1222233221  12221111 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---C---CchhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g---~~r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|+||.++|.....   .   +.-.+.+..|+.-    .+.+.+.+.+..+.+.++++|.
T Consensus        83 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss  144 (262)
T PRK13394         83 GSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGS  144 (262)
T ss_pred             CCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcc
Confidence            3489999999864211   1   1122334456554    5666666633334455665553

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=97.60  E-value=0.00092  Score=60.12  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=69.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH------HhcCCCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD------ISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d------l~~~~~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      .|||+|+|+ |.||+.++..|...|.  +|.++++..+.-.++-      +........+.. ...+  .+.....|+||
T Consensus         2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~-~~~~--~~~~~~~D~vi   75 (305)
T PRK05708          2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAI-PAET--ADAAEPIHRLL   75 (305)
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeecc-CCCC--cccccccCEEE
Confidence            479999998 9999999999998886  8999998642111110      100000001111 0111  12356889999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      +|.    |.-.            ..+.++.+..+ .|++.++.+-|=++..-     .+++.  +|.+++++-
T Consensus        76 v~v----K~~~------------~~~al~~l~~~l~~~t~vv~lQNGv~~~e-----~l~~~--~~~~~v~~g  125 (305)
T PRK05708         76 LAC----KAYD------------AEPAVASLAHRLAPGAELLLLQNGLGSQD-----AVAAR--VPHARCIFA  125 (305)
T ss_pred             EEC----CHHh------------HHHHHHHHHhhCCCCCEEEEEeCCCCCHH-----HHHHh--CCCCcEEEE
Confidence            996    2111            23344455554 48888999999998422     22332  677788755

>PRK06182 short chain dehydrogenase; Validated

Probab=97.60  E-value=0.0007  Score=59.21  Aligned_cols=114  Identities=13%  Similarity=0.127  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-------CCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-------GMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-------~aDiV   92 (258)
                      +++|.|+||+|.+|.+++..|...|.  +|++.+++.++..  ++.........-++....++++.++       +.|++
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~l~--~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDKME--DLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            45899999999999999999998887  8999998754211  2221111100111111122333333       78999


Q ss_pred             EEcCCCCCCC---CCc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~---g~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |+++|.....   ..+   -...+..|+.    ..+.+.+.+++... +.+++++.
T Consensus        79 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS  133 (273)
T PRK06182         79 VNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS  133 (273)
T ss_pred             EECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence            9999864321   111   2233455553    35666666665543 45665554

>PRK06482 short chain dehydrogenase; Provisional

Probab=97.59  E-value=0.0033  Score=54.93  Aligned_cols=112  Identities=13%  Similarity=0.029  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~~a   89 (258)
                      +++.|+||+|++|++++..|+..|.  .|.+.+++.+...  ++.... ...+..+.. -+|   +.+.       +...
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   77 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPDALD--DLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI   77 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999887  8889887653211  111110 011111111 112   2222       2457


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHh----hhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i----~~~~p~a~viv~tN  138 (258)
                      |+||+++|......   .+.   ...+..|+.-...+++.+    ++.+ .+.++++|.
T Consensus        78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  135 (276)
T PRK06482         78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQG-GGRIVQVSS  135 (276)
T ss_pred             CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            99999998653221   111   234556776666666665    3333 345555553

>PRK12320 hypothetical protein; Provisional

Probab=97.55  E-value=0.00064  Score=67.54  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||.|+||+|++|++++..|..+|+  +|..+|+....     ..+.... .+. ++. ...+.++++++|+||++++..
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~ve-~v~~Dl~-d~~l~~al~~~D~VIHLAa~~   71 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPRVD-YVCASLR-NPVLQELAGEADAVIHLAPVD   71 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCCce-EEEccCC-CHHHHHHhcCCCEEEEcCccC
Confidence            5899999999999999999999887  89999975421     1111110 111 111 112456678999999998742


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .  ..    ....|+.....+++.+++.+.  .+|.+|
T Consensus        72 ~--~~----~~~vNv~Gt~nLleAA~~~Gv--RiV~~S  101 (699)
T PRK12320         72 T--SA----PGGVGITGLAHVANAAARAGA--RLLFVS  101 (699)
T ss_pred             c--cc----hhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence            1  11    124677888888888887664  444444

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.55  E-value=0.0003  Score=63.59  Aligned_cols=110  Identities=15%  Similarity=0.169  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHhCCCCcEEEEEeCCCCh----------hH--HHH----H-hcCCC--------CCeEEEEeCCCchHhhh
Q 025075           32 IGQPLAMLMKINPLVSVLHLYDVVNTP----------GV--TAD----I-SHMDT--------GAVVRGFLGQPQLENAL   86 (258)
Q Consensus        32 VG~~~a~~L~~~~~~~ei~L~D~~~~~----------g~--~~d----l-~~~~~--------~~~v~~~~~~~d~~~a~   86 (258)
                      +|..++..++..|+  +|+|+|++++.          +.  ..+    + .....        ...+... .+.|+++++
T Consensus         1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~~~a~   77 (314)
T PRK08269          1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVV-ARDGAADAL   77 (314)
T ss_pred             CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEee-cCcchHHHh
Confidence            57788888899998  99999998731          10  001    0 01000        1133321 122466889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ++||+||.++              .++.++.+++...+.+.+ |++++  .||.+..   .++++.....  .|+|++|+
T Consensus        78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~---~~~~la~~~~--~p~r~~g~  136 (314)
T PRK08269         78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTF---LVTDLQRHVA--HPERFLNA  136 (314)
T ss_pred             ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccC---CHHHHHhhcC--CcccEEEE
Confidence            9999999986              345777888888899987 45555  7777664   2344444432  45788887

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.55  E-value=0.00027  Score=63.24  Aligned_cols=65  Identities=20%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||+|||. |.+|.+++..|...|+  +|.+||+++++..  ++....    ..   ...++.+++++||+||++.
T Consensus         1 m~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~~~--~~~~~g----~~---~~~s~~~~~~~aDvVi~~v   65 (296)
T PRK15461          1 MAAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQAVD--ALVDKG----AT---PAASPAQAAAGAEFVITML   65 (296)
T ss_pred             CCeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHH--HHHHcC----Cc---ccCCHHHHHhcCCEEEEec
Confidence            358999998 9999999999999887  8999999865322  222211    11   1235567899999999986

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.54  E-value=0.0008  Score=61.91  Aligned_cols=120  Identities=18%  Similarity=0.261  Sum_probs=73.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh------hHH----HHHh----cCCCCCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GVT----ADIS----HMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~------g~~----~dl~----~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      ++|+|||- |+||..+|..++.+|.  ++.-+|+|+.+      |+.    .++.    ......+++   .|+|. +.+
T Consensus        10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~-~~l   82 (436)
T COG0677          10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP-EEL   82 (436)
T ss_pred             eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh-hhc
Confidence            79999998 9999999999999998  89999998741      110    0010    111112343   35676 468


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE--ecCCCCCcHHHHHHHHHH
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL--ISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv--~tNPvd~~~~i~t~~~~~  153 (258)
                      +.||++|+|.-.|-+...      +-.+..+.+-++.|.++=.++-+++  .|-|..++=-++--++..
T Consensus        83 ~~~dv~iI~VPTPl~~~~------~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          83 KECDVFIICVPTPLKKYR------EPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             ccCCEEEEEecCCcCCCC------CCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            899999999876654421      1123445556666666544443333  466766544343333333

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.53  E-value=0.0011  Score=59.53  Aligned_cols=64  Identities=16%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVIi~a   96 (258)
                      |||+|||. |.+|++++..|...++  +|..||+++++...  +.+..    ..   ...++++.+++   +|+||++.
T Consensus         1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~~~~--~~~~g----~~---~~~s~~~~~~~~~~advVi~~v   67 (299)
T PRK12490          1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEAVDV--AGKLG----IT---ARHSLEELVSKLEAPRTIWVMV   67 (299)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHHCC----Ce---ecCCHHHHHHhCCCCCEEEEEe
Confidence            58999998 9999999999998887  89999987643222  22211    11   12345566655   69999985

>PRK05717 oxidoreductase; Validated

Probab=97.52  E-value=0.0014  Score=56.61  Aligned_cols=147  Identities=14%  Similarity=0.139  Sum_probs=78.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhh-------hCCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENA-------LTGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a-------~~~aDi   91 (258)
                      +++.|+||+|++|++++..|...|.  +|++.|+++.+.... ..+............+  .++.++       +...|+
T Consensus        11 k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~-~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   87 (255)
T PRK05717         11 RVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKV-AKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLDA   87 (255)
T ss_pred             CEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHH-HHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            4799999999999999999998886  899999875422211 1111110011111111  111111       134799


Q ss_pred             EEEcCCCCCCCC-----Cch---hhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           92 VIIPAGVPRKPG-----MTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        92 VIi~ag~~~~~g-----~~r---~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +|.++|......     .+.   .+.+..|+.-...+.+.+.++  ...+.++++|.....           . +.+..-
T Consensus        88 li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~-----------~-~~~~~~  155 (255)
T PRK05717         88 LVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRAR-----------Q-SEPDTE  155 (255)
T ss_pred             EEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhc-----------C-CCCCCc
Confidence            999998653211     111   234566766666666665432  234566666643321           1 122223


Q ss_pred             EEEEeeccHHHHHHHHHHHhC
Q 025075          162 LLGVTMLDVVRANTFVAEVLG  182 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~  182 (258)
                      .++.+..--..+-+.++++++
T Consensus       156 ~Y~~sKaa~~~~~~~la~~~~  176 (255)
T PRK05717        156 AYAASKGGLLALTHALAISLG  176 (255)
T ss_pred             chHHHHHHHHHHHHHHHHHhc
Confidence            444443223356667777775

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.52  E-value=0.0003  Score=55.64  Aligned_cols=78  Identities=19%  Similarity=0.255  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .-+..|+.|+|| |.+|..+++.|...|. ++|.+++++.++++.  |........+.... ..++.+.+.++|+||.+.
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~--l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT   83 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPERAEA--LAEEFGGVNIEAIP-LEDLEEALQEADIVINAT   83 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHHHHHH--HHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHHHHHH--HHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence            444569999998 9999999999999875 589999987654332  22111111233322 246667889999999987


Q ss_pred             CCC
Q 025075           97 GVP   99 (258)
Q Consensus        97 g~~   99 (258)
                      +.+
T Consensus        84 ~~~   86 (135)
T PF01488_consen   84 PSG   86 (135)
T ss_dssp             STT
T ss_pred             CCC
Confidence            654

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.52  E-value=0.00068  Score=61.76  Aligned_cols=90  Identities=16%  Similarity=0.235  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++....  .+.        ..   ...++++++++||+|+++...
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~---~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT---YKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh---ccCCHHHHHhcCCEEEEeCCC
Confidence            3468999998 9999999999988887  999999875311  110        01   124678899999999998621


Q ss_pred             CCCCCCchhhHHHHhHHHH-HHHHHHhhhhCCCcEEEEecC
Q 025075           99 PRKPGMTRDDLFNINAGIV-RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~-~~i~~~i~~~~p~a~viv~tN  138 (258)
                        .+         .+..++ .+.   +....|++++|+++-
T Consensus       209 --t~---------~t~~li~~~~---l~~mk~gavlIN~aR  235 (330)
T PRK12480        209 --NK---------ESYHLFDKAM---FDHVKKGAILVNAAR  235 (330)
T ss_pred             --cH---------HHHHHHhHHH---HhcCCCCcEEEEcCC
Confidence              11         111111 222   333347889998874

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.52  E-value=0.0006  Score=64.94  Aligned_cols=98  Identities=15%  Similarity=0.153  Sum_probs=63.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--CCeEEEEeCCCchHhhhC---CCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~---~aDiVIi   94 (258)
                      |.+|+|||. |.+|++++..|+..|+  +|.+||+++++...  +.....  ...+.   ..+++++.++   ++|+||+
T Consensus         1 ~~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~~~~--l~~~~~~~g~~i~---~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          1 MSDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEKTEE--FVKKAKEGNTRVK---GYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CCEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH--HHHhhhhcCCcce---ecCCHHHHHhcCCCCCEEEE
Confidence            358999998 9999999999999998  89999998753222  221100  11121   2356777665   5898888


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  140 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  140 (258)
                      ++-    ++           +.++++++.+..+ .|+.++|..+|-.
T Consensus        73 ~v~----~~-----------~~v~~vi~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         73 LIK----AG-----------EAVDETIDNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             EeC----Ch-----------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            752    22           2234444444443 4677888887743

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.51  E-value=0.00086  Score=59.26  Aligned_cols=66  Identities=23%  Similarity=0.319  Sum_probs=44.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||. |.+|.+++..|...|+..+|..+|++++....  +.....   ...   ..++.+ +.++|+||++.
T Consensus         1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~--~~~~g~---~~~---~~~~~~-~~~aD~Vilav   66 (275)
T PRK08507          1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELHLKK--ALELGL---VDE---IVSFEE-LKKCDVIFLAI   66 (275)
T ss_pred             CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHH--HHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence            58999997 99999999999988865578999987642111  111111   100   123444 44699999996

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=97.51  E-value=0.00077  Score=60.80  Aligned_cols=119  Identities=24%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      |||+|+|+ |.||+.+++.|.+.|.  +|.++-+++. .+.     +.+.+.......... ..++ .+....+|+||++
T Consensus         1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~-~~~~-~~~~~~~Dlviv~   74 (307)
T COG1893           1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVV-AATD-AEALGPADLVIVT   74 (307)
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHH-HHHHHhCCeEEecCCCccccccc-cccC-hhhcCCCCEEEEE
Confidence            69999998 9999999999999883  6777766542 111     111111110011111 1222 3667899999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EEeec
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML  168 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi-G~t~l  168 (258)
                      .    |..+            ..+.++.+..+. |+++|+.+-|-++.    . +.+++.  +|+++|+ |+|..
T Consensus        75 v----Ka~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~----~-e~l~~~--~~~~~il~G~~~~  126 (307)
T COG1893          75 V----KAYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGH----E-EELRKI--LPKETVLGGVTTH  126 (307)
T ss_pred             e----cccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcH----H-HHHHHh--CCcceEEEEEeee
Confidence            6    3322            255667777765 67788889999983    2 334443  5666665 67543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=97.51  E-value=0.0058  Score=52.74  Aligned_cols=118  Identities=13%  Similarity=0.145  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~   87 (258)
                      ++|.|+||+|.+|.+++..|++.|.  +|+++|++....  ...++........+..+.. -+|   +..++       .
T Consensus         3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~   80 (259)
T PRK12384          3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG   80 (259)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3699999999999999999999887  899999876421  1112221110011221111 112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ..|+||.++|.+....   .+..   ..+..|+.    +.+.+.+.+.+..+++.++.+|...
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~  143 (259)
T PRK12384         81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKS  143 (259)
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcc
Confidence            5799999998654221   1222   22344543    3556666666555456777666543

>PRK07326 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0018  Score=54.98  Aligned_cols=114  Identities=18%  Similarity=0.178  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~-------~   87 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|+++++++...  ...++...   ..+..+..    ..++.+.+       .
T Consensus         7 ~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          7 KVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG   81 (237)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999988887  899999876421  11223221   11221111    11222223       3


Q ss_pred             CCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP  139 (258)
                      .+|+||.++|.....   ..+..   +.+..|+.....+.+.+.+.  ...+.++++|..
T Consensus        82 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~  141 (237)
T PRK07326         82 GLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL  141 (237)
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence            799999998764321   11222   23445555444444333322  234566666654

>PLN02253 xanthoxin dehydrogenase

Probab=97.50  E-value=0.0026  Score=55.77  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=78.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEE----EeCCCchHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRG----FLGQPQLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~----~~~~~d~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.....  ..++..   ...+..    +....+++++++      
T Consensus        18 ~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~~   92 (280)
T PLN02253         18 GKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDKF   92 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999999887  8999998754211  122211   111111    111112233333      


Q ss_pred             -CCCEEEEcCCCCCCC-C----Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHh
Q 025075           88 -GMDLVIIPAGVPRKP-G----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~-g----~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~  154 (258)
                       ..|++|+++|....+ +    .+.   ...+..|+.-.    +.+.+.+.+. ..+.+++++.....           .
T Consensus        93 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS~~~~-----------~  160 (280)
T PLN02253         93 GTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCSVASA-----------I  160 (280)
T ss_pred             CCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecChhhc-----------c
Confidence             689999999864321 1    111   23455565443    3344444332 34566666543320           1


Q ss_pred             CCCCCCcEEEEeeccHHHHHHHHHHHhCC
Q 025075          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGL  183 (258)
Q Consensus       155 ~~~~~~kviG~t~lds~R~~~~la~~l~v  183 (258)
                      + .+....++.+..-...+-+.++++++-
T Consensus       161 ~-~~~~~~Y~~sK~a~~~~~~~la~e~~~  188 (280)
T PLN02253        161 G-GLGPHAYTGSKHAVLGLTRSVAAELGK  188 (280)
T ss_pred             c-CCCCcccHHHHHHHHHHHHHHHHHhhh
Confidence            1 222234555443344566777777753

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.50  E-value=0.0049  Score=52.68  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++..
T Consensus         5 ~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~~   40 (251)
T PRK07231          5 GKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNEE   40 (251)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999887  7999999864

>PRK07856 short chain dehydrogenase; Provisional

Probab=97.50  E-value=0.0018  Score=55.81  Aligned_cols=110  Identities=12%  Similarity=0.097  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-------CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-------TG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~   88 (258)
                      .+++.|+||+|.+|..++..|+..|.  +|++.|++...    .....    .+..+.    ...++++.+       ..
T Consensus         6 ~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~----~~~~~----~~~~~~~D~~~~~~~~~~~~~~~~~~~~   75 (252)
T PRK07856          6 GRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE----TVDGR----PAEFHAADVRDPDQVAALVDAIVERHGR   75 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh----hhcCC----ceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999887  89999987532    01110    111111    111223333       34


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecCC
Q 025075           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISNP  139 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tNP  139 (258)
                      .|+||.++|......   .+   -...+..|+.-...+.+.+.    +....+.++++|.-
T Consensus        76 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~  136 (252)
T PRK07856         76 LDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSV  136 (252)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccc
Confidence            599999998642211   11   12345556655544544443    22234667766653

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.50  E-value=0.00078  Score=58.10  Aligned_cols=110  Identities=22%  Similarity=0.259  Sum_probs=68.3

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc--EEEEEeCCC----Chh-----HHHHHhcCCCCCeEEE
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTGAVVRG   75 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~--ei~L~D~~~----~~g-----~~~dl~~~~~~~~v~~   75 (258)
                      |.++.+....+.+..||.|+|| |..|..++..|...|. +  +|.++|++.    ++.     ...++.+......   
T Consensus        12 ~~~al~~~g~~l~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---   86 (226)
T cd05311          12 LLNALKLVGKKIEEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---   86 (226)
T ss_pred             HHHHHHHhCCCccCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---
Confidence            4444444333455579999998 9999999999988775 4  899999983    222     1122222110001   


Q ss_pred             EeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        76 ~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .  ..++.++++++|++|.+.+    +|+-       +    .+..+.+   +++.+++.++||..
T Consensus        87 ~--~~~l~~~l~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~  132 (226)
T cd05311          87 T--GGTLKEALKGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVP  132 (226)
T ss_pred             c--cCCHHHHHhcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCC
Confidence            1  1356688999999998864    3431       1    2333333   36677777889975

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=97.48  E-value=0.0036  Score=54.08  Aligned_cols=114  Identities=18%  Similarity=0.247  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhhh-------CCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENAL-------TGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD   90 (258)
                      +++.|+|++|.+|.+++..|+.+|.  +|++.|++.....  ..++... . ..+. ++....++++++       ...|
T Consensus         7 ~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~-~-~~~~~D~~~~~~~~~~~~~~~~~~~~id   82 (257)
T PRK07067          7 KVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGPA-A-IAVSLDVTRQDSIDRIVAAAVERFGGID   82 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCCc-e-EEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4799999999999999999999987  8999998765222  1122111 0 0111 011111222323       3689


Q ss_pred             EEEEcCCCCCC-C--CCc---hhhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecC
Q 025075           91 LVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~-~--g~~---r~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tN  138 (258)
                      ++|.++|.... +  ..+   -.+.+..|+.-...+.+.+.    +..+.+.+++++.
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  140 (257)
T PRK07067         83 ILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS  140 (257)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99999886421 1  111   12335566555544554443    3234466666665

>PRK08219 short chain dehydrogenase; Provisional

Probab=97.48  E-value=0.0012  Score=55.63  Aligned_cols=75  Identities=21%  Similarity=0.204  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE--EEeCCCchHhhhC---CCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR--GFLGQPQLENALT---GMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~--~~~~~~d~~~a~~---~aDiVIi   94 (258)
                      ++++.|+||+|++|..++..|+++ .  +|++++++.....  ++.+......+.  ++....++.++++   +.|.||+
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~   77 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAERLD--ELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH   77 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHHHH--HHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence            468999999999999999988877 4  7999998753211  121110000111  1111123344444   5999999


Q ss_pred             cCCCC
Q 025075           95 PAGVP   99 (258)
Q Consensus        95 ~ag~~   99 (258)
                      ++|..
T Consensus        78 ~ag~~   82 (227)
T PRK08219         78 NAGVA   82 (227)
T ss_pred             CCCcC
Confidence            99864

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=97.48  E-value=0.0027  Score=54.82  Aligned_cols=116  Identities=14%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe--CC--CchHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL--GQ--PQLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~--~~--~d~~~a~-------~   87 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|+++.+.  ...++....  ..+..+.  .+  .++.+.+       .
T Consensus        11 k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   86 (255)
T PRK07523         11 RRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIG   86 (255)
T ss_pred             CEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5899999999999999999999887  899999876421  111222211  1111111  11  1222222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv  140 (258)
                      ..|+||+++|......   .+   -.+.+..|+.-...+.+.+.++   ...+.++++|...
T Consensus        87 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~  148 (255)
T PRK07523         87 PIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQ  148 (255)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccch
Confidence            5799999998643111   11   1234556665554455544443   2345666666543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.47  E-value=0.0013  Score=58.89  Aligned_cols=64  Identities=16%  Similarity=0.210  Sum_probs=44.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVIi~a   96 (258)
                      |||+|||. |.+|++++..|...|+  +|.+||+++++...  +.+..    ...   ..++++.++.   +|+||++.
T Consensus         1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~~~~--~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v   67 (301)
T PRK09599          1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEAVEA--LAEEG----ATG---ADSLEELVAKLPAPRVVWLMV   67 (301)
T ss_pred             CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHHHHH--HHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence            58999998 9999999999999887  89999998653222  22211    111   2344555554   69999985

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=97.46  E-value=0.0033  Score=54.08  Aligned_cols=35  Identities=14%  Similarity=0.118  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |+|.|+||+|.+|..++..|...|.  +|+++++++.
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~   35 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQE   35 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            5899999999999999999998887  8999998764

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=97.46  E-value=0.0023  Score=59.96  Aligned_cols=106  Identities=18%  Similarity=0.219  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EE-EEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ++++|.|+||+|.+|.+++..|...|.  +|+++|++.++.. ..+.+...... +. +.....++.+.+.+.|++|+.+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~l~-~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnA  253 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDKIT-LEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINH  253 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHH-HHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECC
Confidence            456899999999999999999999887  8999998653211 11211111111 11 1111123445578899999999


Q ss_pred             CCCCCCCCch---hhHHHHhHH----HHHHHHHHhhhh
Q 025075           97 GVPRKPGMTR---DDLFNINAG----IVRTLCEGIAKC  127 (258)
Q Consensus        97 g~~~~~g~~r---~d~~~~n~~----i~~~i~~~i~~~  127 (258)
                      |.......+.   .+.++.|..    +++.+.+.+++.
T Consensus       254 Gi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~  291 (406)
T PRK07424        254 GINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN  291 (406)
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8653322222   234555655    445555555543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.46  E-value=0.00065  Score=58.51  Aligned_cols=72  Identities=22%  Similarity=0.202  Sum_probs=47.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCC--chHhh-hCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP--QLENA-LTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~--d~~~a-~~~aDiVIi~ag   97 (258)
                      |+++|+|+ |.+|+++|..|...|+  +++++|.+++..... +.+.. ...+-.-.+++  -|+++ +.++|++|.+.|
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~~~~~-~~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEERVEEF-LADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHHHHHH-hhhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            68999998 9999999999999998  999999987532210 11111 11111111111  23444 689999999864

>PRK08278 short chain dehydrogenase; Provisional

Probab=97.46  E-value=0.0089  Score=52.41  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---------hHHHHHhcCCCCCeEEEE----eCCCchHhhh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGF----LGQPQLENAL   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---------g~~~dl~~~~~~~~v~~~----~~~~d~~~a~   86 (258)
                      .+++.|+||+|.+|..++..|++.|.  +|++++++...         ....++.....  .+..+    ....++.+.+
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~D~~~~~~i~~~~   81 (273)
T PRK08278          6 GKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG--QALPLVGDVRDEDQVAAAV   81 (273)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHH
Confidence            35799999999999999999999887  89999986531         01112221111  11111    1111222233


Q ss_pred             -------CCCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCCCcHHHHHHH
Q 025075           87 -------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        87 -------~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                             ...|++|+++|.....   ..+..   ..+..|+.-...+.+.+..+   ...+.++++|.+...        
T Consensus        82 ~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~--------  153 (273)
T PRK08278         82 AKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNL--------  153 (273)
T ss_pred             HHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhc--------
Confidence                   2689999999863211   12222   23444554333343333322   234677766654321        


Q ss_pred             HHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          151 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       151 ~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                        ....++....++.+.....++-..++++++  +..|++..+.
T Consensus       154 --~~~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i~  193 (273)
T PRK08278        154 --DPKWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNALW  193 (273)
T ss_pred             --cccccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEEe
Confidence              000123334555554444566777777775  4556655444

>PRK12828 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.0016  Score=55.13  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeCCCchHhhh-------CCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENAL-------TGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aD   90 (258)
                      .++|.|+||+|.+|+.++..|+++|.  +|+++|++..+  ....++.........-++....++.+++       ...|
T Consensus         7 ~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          7 GKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            35899999999999999999998887  79999997642  1122232221110001111111222223       3689


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           91 LVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      +||.++|......   .+.   .+.+..|......+++.+.+.   .+...+++++.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  141 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGA  141 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECc
Confidence            9999987542111   111   123445555444444444321   23445665554

>PRK07806 short chain dehydrogenase; Provisional

Probab=97.45  E-value=0.002  Score=55.17  Aligned_cols=115  Identities=17%  Similarity=0.225  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (258)
                      .+++.|+||+|++|.+++..|...|.  +|++++++.. ..  ...++....  ..+..+. .-+|   +...+      
T Consensus         6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   81 (248)
T PRK07806          6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE   81 (248)
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999998887  8888887643 11  112232211  1111111 1112   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       .+.|+||.++|.......+..+.+..|......+++.+.++. .++.++++|.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence             368999999875322111222334456665566666666543 2455665553

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=97.44  E-value=0.0027  Score=54.86  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhh-------hC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENA-------LT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~   87 (258)
                      +++.|+||+|.+|++++..|...|.  +|++.+++..+..  ..++....  ..+..+.+ -+|   +.+.       +.
T Consensus        13 k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~   88 (259)
T PRK08213         13 KTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFG   88 (259)
T ss_pred             CEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            5899999999999999999998887  8999998654211  11222111  11111111 112   2111       23


Q ss_pred             CCCEEEEcCCCCCCCC---C---chhhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---M---TRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~---~r~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN  138 (258)
                      ..|.||+++|......   .   .-.+.+..|+.-...+.+.+.++    .+.+.++++|.
T Consensus        89 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS  149 (259)
T PRK08213         89 HVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS  149 (259)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            6799999998532111   1   11234567777666666665543    23456666665

>PRK06101 short chain dehydrogenase; Provisional

Probab=97.44  E-value=0.0032  Score=53.95  Aligned_cols=114  Identities=21%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EE-EEeCCCchHhhhCC----CCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VR-GFLGQPQLENALTG----MDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a~~~----aDiVIi   94 (258)
                      .++.|+||+|.+|..++..|+.+|.  +|++.|++++....  +........ +. ++....+++++++.    .|.+|+
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVLDE--LHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence            4799999999999999999999887  89999987642211  111110001 11 11111233334433    478888


Q ss_pred             cCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           95 PAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        95 ~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                      .+|......   .+.   .+.+..|+.-...+.+.+..+ .+.+.+++++.
T Consensus        78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS  128 (240)
T PRK06101         78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS  128 (240)
T ss_pred             cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence            887432111   122   234666776666666666543 23455666654

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=97.44  E-value=0.0035  Score=54.36  Aligned_cols=35  Identities=14%  Similarity=0.134  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |++.|+||+|.+|..++..|+..|.  +|++.|+++.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~   35 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEE   35 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            5899999999999999999999987  8999998764

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.43  E-value=0.0014  Score=56.00  Aligned_cols=96  Identities=21%  Similarity=0.282  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||+|||. |.+|..+.-.+.... -++-+.+||.+.++...  +......+.      .+++++.+++.|+++-+|+  
T Consensus         1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~--~~~~~~~~~------~s~ide~~~~~DlvVEaAS--   69 (255)
T COG1712           1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEEKAKE--LEASVGRRC------VSDIDELIAEVDLVVEAAS--   69 (255)
T ss_pred             CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHHHHHH--HHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence            58999998 999999987776542 35678899998764332  222211111      1456677799999999985  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                                    .+.+++++.++-+.+.|.+++.++-=+|
T Consensus        70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad   97 (255)
T COG1712          70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD   97 (255)
T ss_pred             --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence                          4457888888888888877776554444

>PRK07102 short chain dehydrogenase; Provisional

Probab=97.42  E-value=0.0016  Score=55.78  Aligned_cols=117  Identities=19%  Similarity=0.054  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh----CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL----TGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~----~~a   89 (258)
                      |++|.|+||+|.+|..++..|+..|.  +|++.|++++..  ...++.... ...+..+..    ..++++.+    +..
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   77 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP   77 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence            45899999999999999999999887  899999876421  122222211 112221111    11222222    245


Q ss_pred             CEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP  139 (258)
                      |++|+++|.....   ..+..   +.+..|+.-...+.+.+.++   ...+.++++|-.
T Consensus        78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~  136 (243)
T PRK07102         78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSV  136 (243)
T ss_pred             CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecc
Confidence            9999998753211   12222   34556666555555554433   234566666543

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=97.42  E-value=0.0006  Score=60.31  Aligned_cols=152  Identities=13%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCCCCC
Q 025075           24 AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK  101 (258)
Q Consensus        24 ~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~~~~  101 (258)
                      .|+||+|++|++++..|...|.  ++++.....    ..|+.+            ..++.+.++  +.|+||++|+....
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~------------~~~l~~~~~~~~~d~Vih~A~~~~~   62 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTR------------QADVEAFFAKEKPTYVILAAAKVGG   62 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCC------------HHHHHHHHhccCCCEEEEeeeeecc
Confidence            3789999999999999988876  444443211    122221            123344444  57999999975321


Q ss_pred             ---CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-----CCCcHHHHHHHHHHhCCCCCCc-EEEEeeccHHH
Q 025075          102 ---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-----VNSTVPIAAEVFKKAGTYDPKK-LLGVTMLDVVR  172 (258)
Q Consensus       102 ---~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-----vd~~~~i~t~~~~~~~~~~~~k-viG~t~lds~R  172 (258)
                         ......+....|+.....+++.+++.+.. .+|.+|.-     .+. . .+.|-....+...|.. ..|.+.....+
T Consensus        63 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~-~-~~~E~~~~~~~~~p~~~~Y~~sK~~~e~  139 (306)
T PLN02725         63 IHANMTYPADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAP-Q-PIPETALLTGPPEPTNEWYAIAKIAGIK  139 (306)
T ss_pred             cchhhhCcHHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCC-C-CCCHHHhccCCCCCCcchHHHHHHHHHH
Confidence               11234567788999999999999987643 33333321     000 0 0111000000011111 24444333333


Q ss_pred             HHHHHHHHhCCCCCcee-EEEEecC
Q 025075          173 ANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.....+..+++...++ ..++|.+
T Consensus       140 ~~~~~~~~~~~~~~~~R~~~vyG~~  164 (306)
T PLN02725        140 MCQAYRIQYGWDAISGMPTNLYGPH  164 (306)
T ss_pred             HHHHHHHHhCCCEEEEEecceeCCC
Confidence            43444566677776777 4588875

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=97.41  E-value=0.0012  Score=58.64  Aligned_cols=104  Identities=16%  Similarity=0.088  Sum_probs=64.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhH-HHHHhcCCCCCeEEEEe----CCCchHhhhC--CCCEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TADISHMDTGAVVRGFL----GQPQLENALT--GMDLVI   93 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~-~~dl~~~~~~~~v~~~~----~~~d~~~a~~--~aDiVI   93 (258)
                      ||.|+||+|++|..++..|...|.  +|+++|.... ... ...+....   .+..+.    ...+++++++  +.|+||
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~d~vv   75 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERIT---RVTFVEGDLRDRELLDRLFEEHKIDAVI   75 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhcccc---ceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence            689999999999999999998887  7888876432 111 11111100   111111    1123344444  699999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      .++|....+  .....+.+..|+.....+++.+.+.+..
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~  114 (328)
T TIGR01179        76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVK  114 (328)
T ss_pred             ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCC
Confidence            999864322  1223445678888888888888876544

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=97.41  E-value=0.0091  Score=51.10  Aligned_cols=115  Identities=17%  Similarity=0.217  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CC---chH-------hhhCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLE-------NALTG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~---d~~-------~a~~~   88 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++........+....  ..+..+.. -+   ++.       +....
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         5 GKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999765322112222211  11111111 11   121       12246


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHH----HhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~----~i~~~~p~a~viv~tN  138 (258)
                      .|++|.++|......   .+   -.+.+..|+.-...+++    .+.+.+..+.+++++.
T Consensus        81 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS  140 (248)
T TIGR01832        81 IDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS  140 (248)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence            899999998643211   11   12335556554444444    4433333466666654

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.40  E-value=0.0016  Score=57.04  Aligned_cols=68  Identities=16%  Similarity=0.217  Sum_probs=46.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+ |.+|++++..|...++ ..++.++|++.++..  ++.... . ....   ..+..+.++++|+||++.
T Consensus         1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~--~l~~~~-~-~~~~---~~~~~~~~~~aDvVilav   69 (258)
T PRK06476          1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQIAA--RLAERF-P-KVRI---AKDNQAVVDRSDVVFLAV   69 (258)
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHHHH--HHHHHc-C-CceE---eCCHHHHHHhCCEEEEEe
Confidence            58999997 9999999999988764 346788887654322  222211 0 1111   235567789999999986

>PRK09135 pteridine reductase; Provisional

Probab=97.40  E-value=0.0036  Score=53.35  Aligned_cols=103  Identities=19%  Similarity=0.204  Sum_probs=58.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      ++|.|+||+|++|++++..|+..|.  +|+++++... .  ....++.+.... .+..+. .-+|   +..+++      
T Consensus         7 ~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   83 (249)
T PRK09135          7 KVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRPG-SAAALQADLLDPDALPELVAACVAAF   83 (249)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999887  8999987542 1  111223221110 111111 1112   222233      


Q ss_pred             -CCCEEEEcCCCCCC--CC-Cc---hhhHHHHhHHHHHHHHHHhhh
Q 025075           88 -GMDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEGIAK  126 (258)
Q Consensus        88 -~aDiVIi~ag~~~~--~g-~~---r~d~~~~n~~i~~~i~~~i~~  126 (258)
                       +.|+||.++|....  .. .+   -.+.+..|+.-...+.+.+.+
T Consensus        84 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~  129 (249)
T PRK09135         84 GRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP  129 (249)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence             57999999985321  11 11   233555676655555555543

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=97.40  E-value=0.0021  Score=54.79  Aligned_cols=114  Identities=22%  Similarity=0.333  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeC-CC---chHhh-------h
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLG-QP---QLENA-------L   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~-~~---d~~~a-------~   86 (258)
                      .+++.|+||+|.+|+.++..|..+|.  .|.+.+++..+...  .++.   .  .+..+.. -.   ++++.       +
T Consensus         6 ~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~---~--~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (245)
T PRK12936          6 GRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG---E--RVKIFPANLSDRDEVKALGQKAEADL   78 (245)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC---C--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999886  78888876532111  1111   1  1111111 11   12221       3


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv  140 (258)
                      ...|+||.++|.....   ..+   -.+.+..|+.....+++.+.+.   .+.+.+++++...
T Consensus        79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~  141 (245)
T PRK12936         79 EGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVV  141 (245)
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHH
Confidence            4689999999864321   111   1234555665544444443322   2345666666543

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=97.40  E-value=0.00024  Score=63.41  Aligned_cols=81  Identities=21%  Similarity=0.288  Sum_probs=51.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhH-----HHHHhcCCC-----CCeEEEEeCCCchHhhhCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGV-----TADISHMDT-----GAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~-----~~dl~~~~~-----~~~v~~~~~~~d~~~a~~~   88 (258)
                      ++||+-||| |+||......++ .++.+ +|.++|++..+-.     .+.+.....     .++-+....++|.+.+++.
T Consensus         1 ~~kicciga-gyvggptcavia~kcp~i-~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~e   78 (481)
T KOG2666|consen    1 MVKICCIGA-GYVGGPTCAVIALKCPDI-EVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKE   78 (481)
T ss_pred             CceEEEecC-cccCCcchheeeecCCce-EEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhh
Confidence            469999998 999988765443 34443 8999999764211     111111110     1111112235789999999


Q ss_pred             CCEEEEcCCCCCCC
Q 025075           89 MDLVIIPAGVPRKP  102 (258)
Q Consensus        89 aDiVIi~ag~~~~~  102 (258)
                      ||+|+++...|.|.
T Consensus        79 adlvfisvntptkt   92 (481)
T KOG2666|consen   79 ADLVFISVNTPTKT   92 (481)
T ss_pred             cceEEEEecCCccc
Confidence            99999998777653

>PRK05875 short chain dehydrogenase; Provisional

Probab=97.39  E-value=0.011  Score=51.56  Aligned_cols=159  Identities=18%  Similarity=0.135  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC----CCchHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~------   87 (258)
                      .+++.|+||+|.+|++++..|...|.  +|++++++...  ....++........+..+..    ..++.+.++      
T Consensus         7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999987  89999987542  11222221110112221111    112222333      


Q ss_pred             -CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                       ..|++|.++|.....+    .+.   .+.+..|+.-...+.+.+.++   ...+.++++|....           .. .
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~-----------~~-~  152 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAA-----------SN-T  152 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhh-----------cC-C
Confidence             6899999998542211    121   123444555554454443332   23456666654221           00 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .|+.-.++.+......+.+.+++.++  +..+++.++.
T Consensus       153 ~~~~~~Y~~sK~a~~~~~~~~~~~~~--~~~i~v~~i~  188 (276)
T PRK05875        153 HRWFGAYGVTKSAVDHLMKLAADELG--PSWVRVNSIR  188 (276)
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            22222333333333345556666664  4456655554

>PRK06172 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0059  Score=52.50  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|..++..|...|.  +|++++++..
T Consensus         8 k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~   42 (253)
T PRK06172          8 KVALVTGGAAGIGRATALAFAREGA--KVVVADRDAA   42 (253)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            5899999999999999999998886  8999998764

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.38  E-value=0.0014  Score=59.79  Aligned_cols=99  Identities=22%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+.++|.|+||+|++|+.++..|....-+.+|+++++++.+...  +........+      .++++++.++|+||.+++
T Consensus       153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~--La~el~~~~i------~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQE--LQAELGGGKI------LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             cCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHH--HHHHhccccH------HhHHHHHccCCEEEECCc
Confidence            34568999999899999999999754224589999986542222  2211100011      246789999999999988


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~  142 (258)
                      .+...-.+..++                  .+..+++=++-|=|+
T Consensus       225 ~~~~~~I~~~~l------------------~~~~~viDiAvPRDV  251 (340)
T PRK14982        225 MPKGVEIDPETL------------------KKPCLMIDGGYPKNL  251 (340)
T ss_pred             CCcCCcCCHHHh------------------CCCeEEEEecCCCCC
Confidence            764211221111                  356777778999773

>PRK08265 short chain dehydrogenase; Provisional

Probab=97.38  E-value=0.0049  Score=53.56  Aligned_cols=36  Identities=19%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..
T Consensus         6 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   41 (261)
T PRK08265          6 GKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDAD   41 (261)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999987  8999998764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=97.36  E-value=0.0039  Score=53.36  Aligned_cols=114  Identities=16%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .+++.|+||+|++|+.++..|+..|.  +|+++|++.....  ..++.....  .+..+.. -.|   +++.+       
T Consensus         3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKGG--NAQAFACDITDRDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45899999999999999999999887  8999998764221  122322111  1221111 111   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tN  138 (258)
                      ...|+||+++|......   .+.   ...+..|+.....+.+.+.    +. +.+.+++++.
T Consensus        79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss  139 (250)
T TIGR03206        79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS  139 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence            35899999998532211   112   2235566665555444443    33 2345555554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK05993 short chain dehydrogenase; Provisional

Probab=97.35  E-value=0.0016  Score=57.21  Aligned_cols=112  Identities=11%  Similarity=0.067  Sum_probs=64.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh--------CCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL--------TGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~--------~~aDi   91 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+++.+...  ++...... .+. ++....++++++        ...|+
T Consensus         5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~~--~l~~~~~~-~~~~Dl~d~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDVA--ALEAEGLE-AFQLDYAEPESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHCCce-EEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence            4799999999999999999999887  8999998764221  12221110 111 111111122222        24699


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           92 VIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|.++|......   .+.   .+.+..|+.-    .+.+.+.+.+.+ .+.|+++|.
T Consensus        80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~-~g~iv~isS  135 (277)
T PRK05993         80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQG-QGRIVQCSS  135 (277)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcC-CCEEEEECC
Confidence            999998643211   111   2345556544    566666666554 345666654

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.35  E-value=0.00069  Score=57.94  Aligned_cols=94  Identities=13%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |+|+||+|.+|++++..|...++  +|..+=++........+.+...  .+..  +....++.++++|+|.||++.+...
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~--~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA--EVVEADYDDPESLVAALKGVDAVFSVTPPSH   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT--EEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc--eEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence            78999999999999999988776  7888877664333333443321  1111  1112346778999999999875432


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                         ..+       .+..+.+++...+.+-+
T Consensus        77 ---~~~-------~~~~~~li~Aa~~agVk   96 (233)
T PF05368_consen   77 ---PSE-------LEQQKNLIDAAKAAGVK   96 (233)
T ss_dssp             ---CCH-------HHHHHHHHHHHHHHT-S
T ss_pred             ---hhh-------hhhhhhHHHhhhccccc
Confidence               111       33345666667666633

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.35  E-value=0.0013  Score=60.72  Aligned_cols=72  Identities=18%  Similarity=0.209  Sum_probs=44.7

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~-~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||+|+||+|.+|..+.. .|.+..+ ..++.++......+....+...    ...... ..|. +.++++|+||++++
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~~-~~~~~~Divf~a~~   74 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFDI-DALKKLDIIITCQG   74 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCCh-hHhcCCCEEEECCC
Confidence            4799999999999999997 5555554 3568887654322222222221    111111 1222 46789999999875

>TIGR01746 Thioester-redct thioester reductase domain

Probab=97.35  E-value=0.0028  Score=57.04  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=67.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-H----HhcC-----CCC-CeEEEEeCC----------C
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-D----ISHM-----DTG-AVVRGFLGQ----------P   80 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-d----l~~~-----~~~-~~v~~~~~~----------~   80 (258)
                      +|.|+||+|++|++++..|...|...+|+++.+........ .    +...     ... ..+..+.+.          .
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58899999999999999999887534788888765421110 1    1100     000 123322221          1


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCc
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA  131 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a  131 (258)
                      ++.+..+++|+||.+++.... .....++...|+.-...+++...+.....
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~  130 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKP  130 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCce
Confidence            234456789999999875321 22334556678888888888887765543

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.34  E-value=0.0012  Score=60.10  Aligned_cols=95  Identities=22%  Similarity=0.266  Sum_probs=61.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+......  +....     .. .   .++++.+++||+|+++... 
T Consensus       150 gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--~~~~~-----~~-~---~~l~ell~~aDiV~l~lP~-  214 (333)
T PRK13243        150 GKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEA--EKELG-----AE-Y---RPLEELLRESDFVSLHVPL-  214 (333)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhh--HHHcC-----CE-e---cCHHHHHhhCCEEEEeCCC-
Confidence            469999998 9999999999988887  8999998653211  11111     11 1   2567889999999998621 


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                       .+ ++        ..++.  .+.+....|++++|+++  ..+|
T Consensus       215 -t~-~T--------~~~i~--~~~~~~mk~ga~lIN~aRg~~vd  246 (333)
T PRK13243        215 -TK-ET--------YHMIN--EERLKLMKPTAILVNTARGKVVD  246 (333)
T ss_pred             -Ch-HH--------hhccC--HHHHhcCCCCeEEEECcCchhcC
Confidence             11 11        11111  02333345889999986  4566

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=97.33  E-value=0.0034  Score=53.94  Aligned_cols=114  Identities=13%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   86 (258)
                      .++|.|+|++|.+|.+++..|...|.  +|++++++....  ...++....  ..+..+.    ...++.+++       
T Consensus         4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   79 (258)
T PRK12429          4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETF   79 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999998887  899999876422  122332111  1121111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .+.|+||.++|......   .+.   .+.+..|+.-    .+.+.+.+++... ..++++|.
T Consensus        80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~iv~iss  140 (258)
T PRK12429         80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGG-GRIINMAS  140 (258)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCC-eEEEEEcc
Confidence            36899999998642211   111   1233344443    5666666665443 34555554

>PRK07069 short chain dehydrogenase; Validated

Probab=97.32  E-value=0.015  Score=49.77  Aligned_cols=115  Identities=23%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-CCh--hHHHHHhcCCCCCe---EE-EEeCCCchHh-------hhC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP--GVTADISHMDTGAV---VR-GFLGQPQLEN-------ALT   87 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~-~~~--g~~~dl~~~~~~~~---v~-~~~~~~d~~~-------a~~   87 (258)
                      ||.|+||+|.+|.+++..|...|.  +|++.+++ ...  ....++........   +. ++....++.+       .+.
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   78 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG   78 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            489999999999999999998887  89999987 331  11112221110001   11 1111111211       234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ..|+||.++|......   .+.   ...+..|+.    ..+.+.+.+.+... +.++++|..
T Consensus        79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss~  139 (251)
T PRK07069         79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISSV  139 (251)
T ss_pred             CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecCh
Confidence            6899999998643211   111   234556665    66777777776543 455555543

>PRK07774 short chain dehydrogenase; Provisional

Probab=97.32  E-value=0.011  Score=50.63  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|...|.  +|+++|+++.
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~   41 (250)
T PRK07774          6 DKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAE   41 (250)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999886  8999998764

>PRK08263 short chain dehydrogenase; Provisional

Probab=97.31  E-value=0.0014  Score=57.32  Aligned_cols=111  Identities=14%  Similarity=0.011  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe--C--CCchHhh-------hCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--G--QPQLENA-------LTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~--~~d~~~a-------~~~a   89 (258)
                      ++|.|+||+|.+|++++..|+.+|.  +|++.+++.....  ++.+.. ...+..+.  .  ..++.+.       +...
T Consensus         4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   78 (275)
T PRK08263          4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATLA--DLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL   78 (275)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999998886  8999998754211  111110 00111111  1  1112122       2467


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEec
Q 025075           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~t  137 (258)
                      |.||+++|......   .+   -.+.+..|+.-    .+.+.+.+++.... .++++|
T Consensus        79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs  135 (275)
T PRK08263         79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS  135 (275)
T ss_pred             CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence            99999998753211   11   12334556554    45555555554433 455554

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.30  E-value=0.0038  Score=56.32  Aligned_cols=102  Identities=20%  Similarity=0.235  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...+||+|||+ |.+|..++..|...+. .+|.++|++.++...  +.... ....  .. ..++.+.+.++|+||.+.+
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~-~~V~v~~r~~~ra~~--la~~~-g~~~--~~-~~~~~~~l~~aDvVi~at~  247 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGV-AEITIANRTYERAEE--LAKEL-GGNA--VP-LDELLELLNEADVVISATG  247 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHH--HHHHc-CCeE--Ee-HHHHHHHHhcCCEEEECCC
Confidence            34579999998 9999999988887553 489999987653322  22111 1111  11 1356778899999999976


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .+..            ..++.+..+..  .....+++-+++|-|
T Consensus       248 ~~~~------------~~~~~~~~~~~--~~~~~~viDlavPrd  277 (311)
T cd05213         248 APHY------------AKIVERAMKKR--SGKPRLIVDLAVPRD  277 (311)
T ss_pred             CCch------------HHHHHHHHhhC--CCCCeEEEEeCCCCC
Confidence            5421            11112221111  124567888999988

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.30  E-value=0.015  Score=49.89  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ++|.|+||+|++|++++..|+..|.  +|+++|+..
T Consensus         3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~   36 (256)
T PRK12745          3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD   36 (256)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence            4689999999999999999999887  899999754

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=97.29  E-value=0.0025  Score=56.12  Aligned_cols=97  Identities=24%  Similarity=0.277  Sum_probs=63.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcCCCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK  101 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~ag~~~~  101 (258)
                      |+|.|++|+||+++...|...|+  +|.++-++..+...  ..+..    +...   +.+.+... ++|+||..||.|--
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~~~----v~~~---~~~~~~~~~~~DavINLAG~~I~   69 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLHPN----VTLW---EGLADALTLGIDAVINLAGEPIA   69 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcCcc----cccc---chhhhcccCCCCEEEECCCCccc
Confidence            68999999999999999999988  89999887643221  12211    1111   11223333 79999999997643


Q ss_pred             CC----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075          102 PG----MTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus       102 ~g----~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      ..    +....+...-+...+.+.+.|.+....
T Consensus        70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~  102 (297)
T COG1090          70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETK  102 (297)
T ss_pred             cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCC
Confidence            22    112334455567778888888866533

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.29  E-value=0.003  Score=57.12  Aligned_cols=92  Identities=20%  Similarity=0.244  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.+|+.++..|..-|.  +|..||.......     .      +..+....++++.+++||+|+++...
T Consensus       135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~~-----~------~~~~~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSWP-----G------VQSFAGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCCC-----C------ceeecccccHHHHHhcCCEEEECCCC
Confidence            3469999998 9999999999998887  8999997542110     0      00011123678999999999998621


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                        .         ..+..++.  .+.+.+..|++++|+++
T Consensus       201 --t---------~~T~~li~--~~~l~~mk~ga~lIN~a  226 (312)
T PRK15469        201 --T---------PETVGIIN--QQLLEQLPDGAYLLNLA  226 (312)
T ss_pred             --C---------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence              1         11222221  23344556889999987

>PLN02712 arogenate dehydrogenase

Probab=97.28  E-value=0.0019  Score=64.10  Aligned_cols=67  Identities=16%  Similarity=0.133  Sum_probs=46.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVIi~   95 (258)
                      ..+++||+|||. |.+|..++..|...|+  +|..+|++.....+.++       .+..   ..++++.+ +++|+||++
T Consensus        49 ~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~-------Gv~~---~~d~~e~~~~~aDvViLa  115 (667)
T PLN02712         49 NTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL-------GVSF---FLDPHDLCERHPDVILLC  115 (667)
T ss_pred             cCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc-------CCEE---eCCHHHHhhcCCCEEEEc
Confidence            345579999997 9999999999998886  89999987432222111       1111   23455544 579999999


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus       116 v  116 (667)
T PLN02712        116 T  116 (667)
T ss_pred             C
Confidence            6

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.28  E-value=0.015  Score=49.52  Aligned_cols=75  Identities=21%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC----CCchHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~----~~d~~~a~-------~   87 (258)
                      +++.|+|++|.+|.+++..|+.+|.  +|++.+++....  ...++...  ...+..+..    ..++.+++       .
T Consensus         8 ~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          8 KNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999887  899999876421  11223211  112222111    11222233       3


Q ss_pred             CCCEEEEcCCCC
Q 025075           88 GMDLVIIPAGVP   99 (258)
Q Consensus        88 ~aDiVIi~ag~~   99 (258)
                      +.|+||.++|..
T Consensus        84 ~id~vi~~ag~~   95 (239)
T PRK07666         84 SIDILINNAGIS   95 (239)
T ss_pred             CccEEEEcCccc
Confidence            799999999864

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.28  E-value=0.0021  Score=58.98  Aligned_cols=74  Identities=24%  Similarity=0.271  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCCCCC--eEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~--~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|+||+|.+|..++..|...+.. +++ +++.+...++.+.-.+.....  ... +. ..|.++.++++|+||++.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~-~~-~~~~~~~~~~~DvVf~alP   77 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLN-LE-PIDEEEIAEDADVVFLALP   77 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCce-ee-cCCHHHhhcCCCEEEECCC
Confidence            58999999999999999988876554 666 667655333322111211111  111 11 1234444469999999863

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12367 short chain dehydrogenase; Provisional

Probab=97.28  E-value=0.0068  Score=52.64  Aligned_cols=102  Identities=14%  Similarity=0.208  Sum_probs=59.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++++++......... +.. ...+. +.....++.+.+...|++|++||..
T Consensus        15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~~-~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESND-ESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhhc-cCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            4799999999999999999999987  89999987521111111 110 10111 1111123445567899999999874


Q ss_pred             CCCCCch---hhHHHHhHH----HHHHHHHHhhh
Q 025075          100 RKPGMTR---DDLFNINAG----IVRTLCEGIAK  126 (258)
Q Consensus       100 ~~~g~~r---~d~~~~n~~----i~~~i~~~i~~  126 (258)
                      .....+.   .+.+..|+.    +.+.+.+.+.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~  124 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELFEDIALN  124 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            3222222   234556665    44444444543

>PRK06179 short chain dehydrogenase; Provisional

Probab=97.27  E-value=0.0024  Score=55.57  Aligned_cols=111  Identities=16%  Similarity=0.194  Sum_probs=62.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC-------CCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT-------GMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aDiV   92 (258)
                      ++|.|+||+|.+|++++..|..+|.  +|++.+++......  ..+..   .+. ++....+++++++       ..|++
T Consensus         5 ~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~~~--~~~~~---~~~~D~~d~~~~~~~~~~~~~~~g~~d~l   77 (270)
T PRK06179          5 KVALVTGASSGIGRATAEKLARAGY--RVFGTSRNPARAAP--IPGVE---LLELDVTDDASVQAAVDEVIARAGRIDVL   77 (270)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCChhhccc--cCCCe---eEEeecCCHHHHHHHHHHHHHhCCCCCEE
Confidence            4799999999999999999999887  89999987532111  01110   011 1111122334443       46999


Q ss_pred             EEcCCCCCCCCC---c---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           93 IIPAGVPRKPGM---T---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        93 Ii~ag~~~~~g~---~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |.++|.......   +   -.+.+..|..    ..+.+.+.+.+.+ .+.|+++|..
T Consensus        78 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  133 (270)
T PRK06179         78 VNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQG-SGRIINISSV  133 (270)
T ss_pred             EECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEECCc
Confidence            999987432211   1   1234455543    3444444455444 3456666543

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.007  Score=53.84  Aligned_cols=65  Identities=28%  Similarity=0.338  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---H--HHHhcCCCCCeEEEEeCCCc-hHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---T--ADISHMDTGAVVRGFLGQPQ-LENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~--~dl~~~~~~~~v~~~~~~~d-~~~a~~~aDiV   92 (258)
                      .+++|+|+|. |.+|..++..|...|+  .+.+++.+...+.   +  +++.+.          .+.+ ..++.++||+|
T Consensus         2 ~~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~----------~~~~~~~~~~~~aD~V   68 (279)
T COG0287           2 ASMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDE----------LTVAGLAEAAAEADLV   68 (279)
T ss_pred             CCcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCcccc----------cccchhhhhcccCCEE
Confidence            3579999997 9999999999999998  5566666553221   1  111111          0112 14678899999


Q ss_pred             EEcC
Q 025075           93 IIPA   96 (258)
Q Consensus        93 Ii~a   96 (258)
                      |++.
T Consensus        69 ivav   72 (279)
T COG0287          69 IVAV   72 (279)
T ss_pred             EEec
Confidence            9996

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=97.27  E-value=0.0014  Score=59.21  Aligned_cols=73  Identities=25%  Similarity=0.352  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++||+|+||+|.||+.+...|.++. .++++.++-..+..|+. .++..-..  .+..  ...|. .+++++|+|++++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~--~~~~~-~~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPE--DAADE-FVFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCcc--ccccc-cccccCCEEEEeCc
Confidence            4699999999999999999999843 45677887665544443 33333211  1110  01222 45779999999986

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.26  E-value=0.0022  Score=59.51  Aligned_cols=77  Identities=13%  Similarity=0.171  Sum_probs=47.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+++||+|+||+|.+|..+...|..++.. +|.++..+...++.....+... ......+. ..+ .+.++++|+||++.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~-el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al  112 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDF-EITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL  112 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCC-eEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence            35679999999999999999988887543 8888876544343221112110 00111011 112 23479999999986


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      +
T Consensus       113 p  113 (381)
T PLN02968        113 P  113 (381)
T ss_pred             C
Confidence            4

>PRK07814 short chain dehydrogenase; Provisional

Probab=97.26  E-value=0.0045  Score=53.81  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch---Hhh-------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL---ENA-------   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------   85 (258)
                      +.+++.|+||+|.+|.+++..|..+|.  +|++.|++.+..  ...++....  ..+..+. .-++.   .++       
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   84 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA   84 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999998887  899999876421  122222211  1222111 11122   122       


Q ss_pred             hCCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHH----hhhhCCCcEEEEecCC
Q 025075           86 LTGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISNP  139 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~----i~~~~p~a~viv~tNP  139 (258)
                      +...|+||.++|......   .+   -.+.+..|+.....+.+.    +.+..+.+.+++++.-
T Consensus        85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~  148 (263)
T PRK07814         85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISST  148 (263)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccc
Confidence            236899999998532211   11   122344555544444444    4343455667766653

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.26  E-value=0.0014  Score=58.62  Aligned_cols=63  Identities=16%  Similarity=0.304  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||. |.+|++++..|...|+  ++.+||+++. .  .++....    ...   ..+..++.++||+||++.
T Consensus         1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~-~--~~~~~~g----~~~---~~s~~~~~~~advVi~~v   63 (292)
T PRK15059          1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV-A--DELLSLG----AVS---VETARQVTEASDIIFIMV   63 (292)
T ss_pred             CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh-H--HHHHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            48999997 9999999999999997  8999998753 1  2222211    111   134567789999999986

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=97.24  E-value=0.00043  Score=61.59  Aligned_cols=95  Identities=21%  Similarity=0.255  Sum_probs=58.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~   98 (258)
                      |||.|+|++|++|+++...|..+++  +++.+++..     .|+.+..            .+.+.++  .-|+||++|+.
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~------------~~~~~~~~~~pd~Vin~aa~   61 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPE------------AVAKLLEAFKPDVVINCAAY   61 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHH------------HHHHHHHHH--SEEEE----
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHH------------HHHHHHHHhCCCeEecccee
Confidence            7999999999999999999998876  788886542     2333211            1112222  58999999875


Q ss_pred             CCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           99 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        99 ~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      ....  .....+....|+.....+++.+.+.+  +.+|-+
T Consensus        62 ~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~   99 (286)
T PF04321_consen   62 TNVDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI   99 (286)
T ss_dssp             --HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred             ecHHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence            3211  12344566788899999999888764  344444

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK09291 short chain dehydrogenase; Provisional

Probab=97.23  E-value=0.011  Score=50.87  Aligned_cols=115  Identities=14%  Similarity=0.159  Sum_probs=62.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHH-HhcCCCCCeEE--EEeCCCchHhhhC-CCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-ISHMDTGAVVR--GFLGQPQLENALT-GMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~d-l~~~~~~~~v~--~~~~~~d~~~a~~-~aDiVIi~   95 (258)
                      ++|.|+||+|.+|..++..|+..|.  ++++.+++..... ..+ .........+.  ++....++..++. +.|+||.+
T Consensus         3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~   80 (257)
T PRK09291          3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNN   80 (257)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEEC
Confidence            4799999999999999999999886  8888887653211 111 11111111111  1111123334444 89999999


Q ss_pred             CCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           96 AGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|......   .+..   ..+..|+.    +.+.+.+.+.+... +.++++|.
T Consensus        81 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS  132 (257)
T PRK09291         81 AGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS  132 (257)
T ss_pred             CCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence            98653211   1111   12333443    33444455544443 56666653

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=97.23  E-value=0.0046  Score=52.46  Aligned_cols=36  Identities=25%  Similarity=0.464  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++|.|+||+|.+|..++..|..+|.  +|.++++++.
T Consensus         5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~~   40 (246)
T PRK05653          5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNEE   40 (246)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChh
Confidence            35899999999999999999999887  7999998764

>PRK08264 short chain dehydrogenase; Validated

Probab=97.23  E-value=0.0045  Score=52.66  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC---CCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT---GMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~---~aDiVIi~a   96 (258)
                      ++|.|+||+|.+|+.++..|+.+|. .+|++++++..+...   ...... .+. ++....++.+.++   ..|+||.++
T Consensus         7 ~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~---~~~~~~-~~~~D~~~~~~~~~~~~~~~~id~vi~~a   81 (238)
T PRK08264          7 KVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD---LGPRVV-PLQLDVTDPASVAAAAEAASDVTILVNNA   81 (238)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh---cCCceE-EEEecCCCHHHHHHHHHhcCCCCEEEECC
Confidence            4799999999999999999998874 478999887542211   111100 111 1111122333333   589999999


Q ss_pred             CCCCCCC----Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075           97 GVPRKPG----MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (258)
Q Consensus        97 g~~~~~g----~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv  140 (258)
                      |....++    .+.   .+.+..|+.-...+.+.+.+.   ...+.++++|...
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  135 (238)
T PRK08264         82 GIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL  135 (238)
T ss_pred             CcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence            8732211    111   223445555444455444322   2345666666543

>PRK06914 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.0065  Score=53.14  Aligned_cols=35  Identities=11%  Similarity=0.054  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.+.|+||+|.+|.+++..|+.+|.  +|++++++..
T Consensus         4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~~   38 (280)
T PRK06914          4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNPE   38 (280)
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCHH
Confidence            4689999999999999999999887  8999998764

>PRK12937 short chain dehydrogenase; Provisional

Probab=97.22  E-value=0.012  Score=50.22  Aligned_cols=114  Identities=14%  Similarity=0.136  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEeC----CCchHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLG----QPQLENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~------   87 (258)
                      ++|.|+||+|.+|++++..|..+|.  ++++...+.. .  ....++....  ..+..+..    ..+++++++      
T Consensus         6 ~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (245)
T PRK12937          6 KVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAF   81 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5899999999999999999999987  7777765442 1  1111222211  12221111    112233333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                       +.|+||.++|......   .+   -...+..|+.-...+.+.+.+. .+.+.++++|.
T Consensus        82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss  140 (245)
T PRK12937         82 GRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST  140 (245)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence             6899999998642111   11   1223456655444445444433 24566776653

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.21  E-value=0.019  Score=49.83  Aligned_cols=156  Identities=16%  Similarity=0.192  Sum_probs=92.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCC-------CchHhhhCCCCEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQ-------PQLENALTGMDLV   92 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~-------~d~~~a~~~aDiV   92 (258)
                      -+.|+||++.+|.+++..|.+.|.  .|+|..++.+  +..+.++.+.......-++...       ..+.+.+...|++
T Consensus         8 v~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iDiL   85 (246)
T COG4221           8 VALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRIDIL   85 (246)
T ss_pred             EEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCcccEE
Confidence            477899999999999999999998  9999999876  3334444431110011111111       1123456789999


Q ss_pred             EEcCCCCCCCCC------chhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           93 IIPAGVPRKPGM------TRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        93 Ii~ag~~~~~g~------~r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      |..||..+-...      +-.+++..|++-+    +.+.+.+.+. ..+.||+++.=..           +.. ||...+
T Consensus        86 vNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG-----------~~~-y~~~~v  152 (246)
T COG4221          86 VNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAG-----------RYP-YPGGAV  152 (246)
T ss_pred             EecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccc-----------ccc-CCCCcc
Confidence            999997543211      2234667787655    4445555544 3568888876444           122 778888


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ++-|.--..-|-.-|-+.+  ..+.|++..|=
T Consensus       153 Y~ATK~aV~~fs~~LR~e~--~g~~IRVt~I~  182 (246)
T COG4221         153 YGATKAAVRAFSLGLRQEL--AGTGIRVTVIS  182 (246)
T ss_pred             chhhHHHHHHHHHHHHHHh--cCCCeeEEEec
Confidence            8765332222322332332  24677766553

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.21  E-value=0.0032  Score=55.56  Aligned_cols=69  Identities=19%  Similarity=0.307  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ||||+|||. |.+|..++..+...+ -..-+.++|++.++..  ++... +.  ...   .+|+++.+.++|+|+++++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~--~~a~~-~~--~~~---~~~~~ell~~~DvVvi~a~   70 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAE--NLASK-TG--AKA---CLSIDELVEDVDLVVECAS   70 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHH--HHHHh-cC--Cee---ECCHHHHhcCCCEEEEcCC
Confidence            479999997 999999998887653 2334668888764322  22221 11  111   2456677799999999973

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.21  E-value=0.0042  Score=56.50  Aligned_cols=66  Identities=20%  Similarity=0.165  Sum_probs=46.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +.+||+|||. |.+|.+++..|...|+  +|+.++.+..+...  .....   .+..    .+..++++.||+|+++.
T Consensus        16 ~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s~~--~A~~~---G~~~----~s~~eaa~~ADVVvLaV   81 (330)
T PRK05479         16 KGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKSWK--KAEAD---GFEV----LTVAEAAKWADVIMILL   81 (330)
T ss_pred             CCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhhHH--HHHHC---CCee----CCHHHHHhcCCEEEEcC
Confidence            3468999998 9999999999999887  88888775432211  11111   1111    25678999999999986

>PRK12939 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.0094  Score=50.86  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|+.++..|...|.  +|+++++++++.  ...++.....  .+..+. .-.|   +.+.+       
T Consensus         7 ~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          7 GKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAGG--RAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            46899999999999999999999887  899998876421  2223322111  222111 1112   21222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      .+.|+||.++|......   .+.   ...+..|..-...+.+.+.++   ...+.++++|.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS  143 (250)
T PRK12939         83 GGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS  143 (250)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence            47899999998643211   111   122445555444444444332   22456666654

>PRK06198 short chain dehydrogenase; Provisional

Probab=97.19  E-value=0.026  Score=48.59  Aligned_cols=116  Identities=15%  Similarity=0.203  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      .++|.|+||+|.+|..++..|...|. ..|++++++....  ...++...  ...+..+. .-.+   +.+.+       
T Consensus         6 ~k~vlItGa~g~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (260)
T PRK06198          6 GKVALVTGGTQGLGAAIARAFAERGA-AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADEAF   82 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999998886 2399999875421  11122211  11221111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .+.|++|.++|......   .+..   ..+..|+.-    ++...+.+.+....+.++++|.
T Consensus        83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss  144 (260)
T PRK06198         83 GRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS  144 (260)
T ss_pred             CCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            36899999998653221   1222   224445443    3444455544433456666654

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=97.19  E-value=0.0019  Score=59.46  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=46.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCC-cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMK-INPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~-~~~~~-~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +||+|+||+|.||+.+...|. ++.+- .+++++......+....+....  ..+..   .++ .+++++.|++++++|
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~--~~v~~---~~~-~~~~~~vDivffa~g   73 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTT--GTLQD---AFD-IDALKALDIIITCQG   73 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCc--ceEEc---Ccc-cccccCCCEEEEcCC
Confidence            489999999999999999888 55553 6888887654333322222111  12221   112 136899999999986

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.18  E-value=0.0037  Score=57.82  Aligned_cols=56  Identities=25%  Similarity=0.249  Sum_probs=42.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||.+|.+|..++..|.+.. ..+|..+|++          +.          ...++++.+++||+||++.
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~----------~~~~~~~~v~~aDlVilav   59 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DP----------GSLDPATLLQRADVLIFSA   59 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------cc----------ccCCHHHHhcCCCEEEEeC
Confidence            3599999988999999999998652 2388999873          10          1134567899999999996

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.18  E-value=0.0029  Score=52.35  Aligned_cols=93  Identities=26%  Similarity=0.368  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC-
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV-   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~-   98 (258)
                      ..+|+|+|. |.+|+.++..|..-|.  +|..||+......  ...+.    ...    ..++++.++.||+|+++... 
T Consensus        36 g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~----~~~----~~~l~ell~~aDiv~~~~plt  102 (178)
T PF02826_consen   36 GKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEF----GVE----YVSLDELLAQADIVSLHLPLT  102 (178)
T ss_dssp             TSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHT----TEE----ESSHHHHHHH-SEEEE-SSSS
T ss_pred             CCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hcccc----cce----eeehhhhcchhhhhhhhhccc
Confidence            469999998 9999999999998887  9999999764222  11111    111    13678999999999998632 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +...+.     +  |    ++.   +.+..|++++||++-.
T Consensus       103 ~~T~~l-----i--~----~~~---l~~mk~ga~lvN~aRG  129 (178)
T PF02826_consen  103 PETRGL-----I--N----AEF---LAKMKPGAVLVNVARG  129 (178)
T ss_dssp             TTTTTS-----B--S----HHH---HHTSTTTEEEEESSSG
T ss_pred             ccccee-----e--e----eee---eeccccceEEEeccch
Confidence            211121     1  1    122   3344578899998743

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK07576 short chain dehydrogenase; Provisional

Probab=97.18  E-value=0.0088  Score=52.10  Aligned_cols=118  Identities=15%  Similarity=0.135  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC--CCchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG--QPQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~--~~d~~~a~-------~~a   89 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.+..  ...++..............  ..++.+.+       ...
T Consensus        10 k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i   87 (264)
T PRK07576         10 KNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI   87 (264)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4899999999999999999998887  899999876421  1122222111101111111  11222222       357


Q ss_pred             CEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCCC
Q 025075           90 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV  140 (258)
Q Consensus        90 DiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNPv  140 (258)
                      |++|.++|.....   ..+..   ..+..|+.-...+.+.+.++  .+++.++++|.+.
T Consensus        88 D~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~  146 (264)
T PRK07576         88 DVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ  146 (264)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence            9999998753211   11221   23445555444444443322  1346777777643

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.18  E-value=0.0035  Score=57.15  Aligned_cols=71  Identities=21%  Similarity=0.418  Sum_probs=47.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++||+|+||+|.+|..++..|..+++ .-+|..+-.+...++.+++..    ..+....  .+ ..+++++|+||++.|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d--~~-~~~~~~vDvVf~A~g   72 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED--LT-TFDFSGVDIALFSAG   72 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee--CC-HHHHcCCCEEEECCC
Confidence            46999999999999999999988654 237777765544444443322    1222211  12 245689999999875

>PRK06181 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.013  Score=50.63  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~   87 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++.....  ..++....  ..+..+.. -.|   +.+++       .
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   77 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG   77 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999998886  8999998754221  22232221  12221111 112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---C-ch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~-~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tNPv  140 (258)
                      +.|+||.++|......   . +.   .+.+..|+.-...+.+.+.++-  ..+.++++|...
T Consensus        78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~  139 (263)
T PRK06181         78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLA  139 (263)
T ss_pred             CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEeccc
Confidence            6899999998643221   1 11   1234556655555555543321  235666665543

>PRK07074 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0055  Score=52.84  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|..++..|+.+|.  +|+++|++..
T Consensus         3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~~   37 (257)
T PRK07074          3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDAA   37 (257)
T ss_pred             CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            3799999999999999999998886  8999998764

>PRK05876 short chain dehydrogenase; Provisional

Probab=97.17  E-value=0.0081  Score=52.84  Aligned_cols=115  Identities=17%  Similarity=0.167  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   86 (258)
                      .+.+.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.....  .+..+.    ...++.+.+       
T Consensus         6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~   81 (275)
T PRK05876          6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEGF--DVHGVMCDVRHREEVTHLADEAFRLL   81 (275)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            34699999999999999999999987  899999876421  1222322111  121111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|..+|.....   ..+.   ...+..|+.    +.+.+.+.+.+.+..+.+++++.
T Consensus        82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS  143 (275)
T PRK05876         82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS  143 (275)
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            3579999999864211   1122   223445544    44455555555544566766654

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=97.17  E-value=0.027  Score=48.54  Aligned_cols=37  Identities=32%  Similarity=0.351  Sum_probs=32.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|+++|+++
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~   42 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE   42 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            3446899999999999999999999987  899999875

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.17  E-value=0.013  Score=50.54  Aligned_cols=155  Identities=17%  Similarity=0.219  Sum_probs=82.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE----eCCCchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~----~~~~d~~~a~-------~~a   89 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++++++........+....  ..+..+    ....+..+.+       ...
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   84 (251)
T PRK12481          9 KVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGHI   84 (251)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999987  899988754322111222111  111111    1111222222       357


Q ss_pred             CEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           90 DLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |++|.++|......   .+..   ..+..|+.    +.+.+.+.+.+....+.|++++.....           .+ .+.
T Consensus        85 D~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~-----------~~-~~~  152 (251)
T PRK12481         85 DILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSF-----------QG-GIR  152 (251)
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhc-----------CC-CCC
Confidence            99999998743211   1112   23444543    455556666554444677766653321           11 222


Q ss_pred             CcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .-.++.+..--..+-+.+|.++.  +..|++..+
T Consensus       153 ~~~Y~asK~a~~~l~~~la~e~~--~~girvn~v  184 (251)
T PRK12481        153 VPSYTASKSAVMGLTRALATELS--QYNINVNAI  184 (251)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence            22334433333445566677663  445554433

>PRK06841 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.004  Score=53.60  Aligned_cols=36  Identities=28%  Similarity=0.403  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|.+++..|+++|.  +|++.+++..
T Consensus        15 ~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~   50 (255)
T PRK06841         15 GKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSED   50 (255)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999887  8999998764

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.16  E-value=0.0097  Score=59.77  Aligned_cols=93  Identities=17%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      .||+|||+ |.+|.+++..|...|+..+|..+|+++++...  ......  ..   ....++.++++++|+||++...  
T Consensus         4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~--a~~~g~--~~---~~~~~~~~~~~~aDvVilavp~--   73 (735)
T PRK14806          4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLEL--AVSLGV--ID---RGEEDLAEAVSGADVIVLAVPV--   73 (735)
T ss_pred             cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHH--HHHCCC--CC---cccCCHHHHhcCCCEEEECCCH--
Confidence            58999997 99999999999988854479999998653211  111111  00   1124566789999999998631  


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t  137 (258)
                                    ..+.++++.+.++. ++.+++.++
T Consensus        74 --------------~~~~~vl~~l~~~~~~~~ii~d~~   97 (735)
T PRK14806         74 --------------LAMEKVLADLKPLLSEHAIVTDVG   97 (735)
T ss_pred             --------------HHHHHHHHHHHHhcCCCcEEEEcC
Confidence                          12355555665553 455555444

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=97.16  E-value=0.053  Score=46.39  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.++|.|+|++|++|.+++..|+..|.  +|+++|++..
T Consensus        11 ~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~   47 (247)
T PRK08945         11 KDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEE   47 (247)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHH
Confidence            345899999999999999999998886  8999998764

>PRK05650 short chain dehydrogenase; Provisional

Probab=97.16  E-value=0.01  Score=51.68  Aligned_cols=113  Identities=19%  Similarity=0.158  Sum_probs=63.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      ++|.|+||+|.+|..++..|...|.  +|++.+++.+...  ..++.....  .+..+. .-.|   +.+.+       .
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~i~~~~~   76 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAGG--DGFYQRCDVRDYSQLTALAQACEEKWG   76 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3799999999999999999999987  8999998764221  122322111  111111 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.++|.....   ..+..   ..+..|+    .+.+.+.+.+++.. .+.++++|.
T Consensus        77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS  136 (270)
T PRK05650         77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS  136 (270)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            689999999864321   11111   2344554    34455555555543 345665654

>PRK06196 oxidoreductase; Provisional

Probab=97.15  E-value=0.0056  Score=54.87  Aligned_cols=114  Identities=19%  Similarity=0.180  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhh-------hCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENA-------LTG   88 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~   88 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.+++..+..  ..++....   .+. ++....++++.       +..
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~Dl~d~~~v~~~~~~~~~~~~~   99 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVMLDLADLESVRAFAERFLDSGRR   99 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEccCCCHHHHHHHHHHHHhcCCC
Confidence            345799999999999999999999987  8999998764221  11222111   011 01111112121       246


Q ss_pred             CCEEEEcCCCCCCCCC----chhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPGM----TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~----~r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|++||....+..    .-...+..|..    +.+.+.+.+.+.. .+.|+++|.
T Consensus       100 iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  156 (315)
T PRK06196        100 IDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALSS  156 (315)
T ss_pred             CCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEECC
Confidence            8999999986432211    11223444544    4566666666543 356666653

>PRK07060 short chain dehydrogenase; Provisional

Probab=97.15  E-value=0.0062  Score=51.92  Aligned_cols=115  Identities=18%  Similarity=0.195  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh---CCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL---TGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~---~~aDiVIi~   95 (258)
                      .+++.|+||+|.+|.+++..|...|.  +|++++++.+...  ++........+. .+....++.+.+   ...|+||.+
T Consensus         9 ~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~~~--~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          9 GKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAALD--RLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            35899999999999999999999887  8999998754221  121110000111 111111223333   347999999


Q ss_pred             CCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecC
Q 025075           96 AGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tN  138 (258)
                      +|.....   ..+.   .+.+..|+.-...+++.+.+.    +..+.++++|.
T Consensus        85 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  137 (245)
T PRK07060         85 AGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS  137 (245)
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence            9864321   1111   223445655554455444432    22356666653

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.14  E-value=0.0028  Score=49.41  Aligned_cols=72  Identities=25%  Similarity=0.313  Sum_probs=43.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHH---hcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI---SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl---~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|+|++|.+|+.++..+.+.+-..=+..+|++.....-.|+   .... ...+.   .++|+++.++.+|++|-..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~-~~~~~---v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG-PLGVP---VTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS-T-SSB---EBS-HHHHTTH-SEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC-Ccccc---cchhHHHhcccCCEEEEcC
Confidence            69999998899999999988884433335667776521111122   1111 11222   1367888899999887753

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK07024 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.0032  Score=54.48  Aligned_cols=36  Identities=36%  Similarity=0.340  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++|.|+||+|.+|..++..|+..|.  +|++.|++.+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~~   37 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRTD   37 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999887  8999998754

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.14  E-value=0.0031  Score=52.66  Aligned_cols=78  Identities=19%  Similarity=0.224  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEe--CCCchHhhhCCCCEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFL--GQPQLENALTGMDLV   92 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiV   92 (258)
                      ..+.+++.|+|++|.+|..++..|...+.  +|.+++++.++...  .++.+. ....+....  ...++.++++++|+|
T Consensus        25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~diV  101 (194)
T cd01078          25 DLKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRAR-FGEGVGAVETSDDAARAAAIKGADVV  101 (194)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhh-cCCcEEEeeCCCHHHHHHHHhcCCEE
Confidence            33456999999889999999999988775  89999987643222  122211 111222111  112345788999998


Q ss_pred             EEcCC
Q 025075           93 IIPAG   97 (258)
Q Consensus        93 Ii~ag   97 (258)
                      |.+..
T Consensus       102 i~at~  106 (194)
T cd01078         102 FAAGA  106 (194)
T ss_pred             EECCC
Confidence            88753

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07063 short chain dehydrogenase; Provisional

Probab=97.14  E-value=0.019  Score=49.63  Aligned_cols=116  Identities=22%  Similarity=0.260  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++++.  ....++........+..+.    ...++.+.+       
T Consensus         7 ~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          7 GKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            34799999999999999999999987  89999987642  1222332210111221111    111222222       


Q ss_pred             CCCCEEEEcCCCCCCC--C-Cchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP--G-MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~--g-~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.++|.....  . .+..   ..+..|+.-    .+.+.+.+.+. ..+.|+++|.
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~g~iv~isS  145 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVER-GRGSIVNIAS  145 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-CCeEEEEECC
Confidence            3689999999864211  1 1111   223445443    34445545443 3456666654

>PRK07574 formate dehydrogenase; Provisional

Probab=97.14  E-value=0.004  Score=57.86  Aligned_cols=98  Identities=18%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.||+.++..|...|.  +|..||+........   .. .  .+..   ..++++.++.||+|+++...
T Consensus       191 ~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~~~---~~-~--g~~~---~~~l~ell~~aDvV~l~lPl  258 (385)
T PRK07574        191 EGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEEVE---QE-L--GLTY---HVSFDSLVSVCDVVTIHCPL  258 (385)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchhhH---hh-c--Ccee---cCCHHHHhhcCCEEEEcCCC
Confidence            3468999998 9999999999988777  899999865211111   10 0  1111   13578899999999998631


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                      .  +         .+..++.  .+.+....|.+++|+++  ..+|
T Consensus       259 t--~---------~T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  290 (385)
T PRK07574        259 H--P---------ETEHLFD--ADVLSRMKRGSYLVNTARGKIVD  290 (385)
T ss_pred             C--H---------HHHHHhC--HHHHhcCCCCcEEEECCCCchhh
Confidence            1  1         1111111  12333445788999886  4455

>PRK12742 oxidoreductase; Provisional

Probab=97.13  E-value=0.013  Score=49.72  Aligned_cols=155  Identities=16%  Similarity=0.212  Sum_probs=76.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhh---hCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA---LTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a---~~~aDiVI   93 (258)
                      .++|.|+||+|.+|..++..|...|.  ++++.+..... ...++.... ........ .+|   +.+.   ....|++|
T Consensus         6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~-~~~~~~~D-~~~~~~~~~~~~~~~~id~li   80 (237)
T PRK12742          6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAGSKD-AAERLAQET-GATAVQTD-SADRDAVIDVVRKSGALDILV   80 (237)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCCHH-HHHHHHHHh-CCeEEecC-CCCHHHHHHHHHHhCCCcEEE
Confidence            45899999999999999999998887  78777653321 111111100 00111111 112   2222   23489999


Q ss_pred             EcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075           94 IPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (258)
Q Consensus        94 i~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t  166 (258)
                      .++|......   .+.   ...+..|+.-...++..+.++ .+.+.+++++.-...          .. ..+....++.+
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~----------~~-~~~~~~~Y~~s  149 (237)
T PRK12742         81 VNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGD----------RM-PVAGMAAYAAS  149 (237)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccc----------cC-CCCCCcchHHh
Confidence            9998643211   111   223444554333333232222 234566655542210          01 13334445554


Q ss_pred             eccHHHHHHHHHHHhCCCCCceeEEE
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDVPV  192 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~~v  192 (258)
                      ......+-..++++++  +..+++.+
T Consensus       150 Kaa~~~~~~~la~~~~--~~gi~v~~  173 (237)
T PRK12742        150 KSALQGMARGLARDFG--PRGITINV  173 (237)
T ss_pred             HHHHHHHHHHHHHHHh--hhCeEEEE
Confidence            3333455666777764  33455433

>PLN00016 RNA-binding protein; Provisional

Probab=97.13  E-value=0.0037  Score=57.64  Aligned_cols=38  Identities=24%  Similarity=0.133  Sum_probs=33.2

Q ss_pred             CCCCeEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           18 AAGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        18 ~~~~KI~II----Ga~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++||.|+    ||+|++|++++..|...|+  +|.+++++..
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~~   91 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGKE   91 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCCc
Confidence            344689999    9999999999999999987  9999998764

>PRK07985 oxidoreductase; Provisional

Probab=97.13  E-value=0.025  Score=50.24  Aligned_cols=116  Identities=18%  Similarity=0.134  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hh-HHHHHhcCCCCCeEEEEe-CCCch---H-------hhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG-VTADISHMDTGAVVRGFL-GQPQL---E-------NAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g-~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~   86 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.+++..  .. ...++.... ...+..+. .-+|.   .       +.+
T Consensus        50 k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         50 RKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5799999999999999999999987  8888876542  11 111111111 11111111 11121   1       223


Q ss_pred             CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075           87 TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  139 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  139 (258)
                      ...|++|+.+|....  +  ..+.   ...+..|+.-...+++.+.++ ...+.||++|..
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~  187 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSI  187 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCc
Confidence            467999999986321  1  1122   234556665544455444433 134667776653

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.12  E-value=0.012  Score=50.14  Aligned_cols=37  Identities=27%  Similarity=0.437  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~   57 (258)
                      ++++|.|+||+|.+|..++..|+..|.  ++++. +++..
T Consensus         4 ~~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~~   41 (247)
T PRK05565          4 MGKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINEE   41 (247)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCHH
Confidence            345899999999999999999988886  77777 88754

>PRK06398 aldose dehydrogenase; Validated

Probab=97.12  E-value=0.0049  Score=53.56  Aligned_cols=149  Identities=14%  Similarity=0.143  Sum_probs=78.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-------hCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aDiV   92 (258)
                      .+++.|+||+|.+|.+++..|...|.  +|++.+++...........    ++   +....+++++       +...|++
T Consensus         6 gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~----~D---~~~~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          6 DKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFK----VD---VSNKEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEE----cc---CCCHHHHHHHHHHHHHHcCCCCEE
Confidence            35899999999999999999999887  8999998653211000000    00   0011122222       2468999


Q ss_pred             EEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           93 IIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        93 Ii~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      |.++|.+...   ..+..   ..+..|+.    +.+.+.+.+.+. ..+.++++|.-...           . ..+..-.
T Consensus        77 i~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-~~~~~~~  143 (258)
T PRK06398         77 VNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIASVQSF-----------A-VTRNAAA  143 (258)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCcchhc-----------c-CCCCCch
Confidence            9999864321   11222   23455554    344445555433 34666666542220           1 1233334


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      ++.+...-..+-+.++.+++  +. |++..+
T Consensus       144 Y~~sKaal~~~~~~la~e~~--~~-i~vn~i  171 (258)
T PRK06398        144 YVTSKHAVLGLTRSIAVDYA--PT-IRCVAV  171 (258)
T ss_pred             hhhhHHHHHHHHHHHHHHhC--CC-CEEEEE
Confidence            44433223345566677764  22 554444

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.11  E-value=0.003  Score=57.80  Aligned_cols=72  Identities=24%  Similarity=0.439  Sum_probs=48.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +.+||+||||+|.+|+.+...|...+.+  .+|.++......|+.+.+...    .+....  .|. +.++++|+||+++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~~-~~~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AKI-NSFEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CCH-HHhcCCCEEEECC
Confidence            3479999999999999999999854432  468888766544554433221    222211  232 4578999999987


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      +
T Consensus        77 ~   77 (347)
T PRK06728         77 G   77 (347)
T ss_pred             C
Confidence            5

>PRK05855 short chain dehydrogenase; Validated

Probab=97.11  E-value=0.014  Score=56.21  Aligned_cols=119  Identities=16%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh----
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL----   86 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~----   86 (258)
                      +.+.+++.|+||+|.+|.+++..|+..|.  +|++.+++.....  ..++.....  .+..+. .-+|   +.+.+    
T Consensus       312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~  387 (582)
T PRK05855        312 PFSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAGA--VAHAYRVDVSDADAMEAFAEWVR  387 (582)
T ss_pred             cCCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHH
Confidence            34446899999999999999999999987  7999998764221  122222111  111111 1112   22222    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           87 ---TGMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        87 ---~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                         ...|++|.+||......   .+..   ..+..|+    ...+.+.+.+.+.+..+.|+++|.-
T Consensus       388 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~  453 (582)
T PRK05855        388 AEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASA  453 (582)
T ss_pred             HhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence               24799999999753221   1221   2344554    3445555666665556777777653

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=97.11  E-value=0.0053  Score=53.26  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+
T Consensus         5 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   40 (262)
T TIGR03325         5 GEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSAA   40 (262)
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999987  8999998754

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK07832 short chain dehydrogenase; Provisional

Probab=97.10  E-value=0.036  Score=48.32  Aligned_cols=118  Identities=19%  Similarity=0.175  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCC-e-EE-EEeCCCch-------HhhhCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGA-V-VR-GFLGQPQL-------ENALTG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~-~-v~-~~~~~~d~-------~~a~~~   88 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++++++.+.  ....++....... . +. ++....++       .+.+..
T Consensus         1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS   78 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            3799999999999999999999886  79999987642  1122222211110 1 11 11100111       122346


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      .|++|.++|......   .+.   ...+..|+.-.    +.+.+.+.+....+.+++++...
T Consensus        79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~  140 (272)
T PRK07832         79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA  140 (272)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence            899999998643211   121   22345555543    33444444333346677666543

>PLN02712 arogenate dehydrogenase

Probab=97.09  E-value=0.0092  Score=59.33  Aligned_cols=66  Identities=18%  Similarity=0.247  Sum_probs=46.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~a   96 (258)
                      .+++||+|||. |.+|.+++..|...|.  +|..||++.....+.++   .    +..   ..++++.++ ++|+||++.
T Consensus       367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav  433 (667)
T PLN02712        367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT  433 (667)
T ss_pred             CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence            35679999997 9999999999988886  89999987532111111   1    111   235556565 599999996

>PRK07109 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.018  Score=52.27  Aligned_cols=114  Identities=14%  Similarity=0.092  Sum_probs=64.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhh-------h
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++++++++.  ....++.....  .+..+. .-+|   ++++       +
T Consensus         8 ~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g~--~~~~v~~Dv~d~~~v~~~~~~~~~~~   83 (334)
T PRK07109          8 RQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAGG--EALAVVADVADAEAVQAAADRAEEEL   83 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEecCCCHHHHHHHHHHHHHHC
Confidence            45799999999999999999999987  89999987642  11222322111  111111 1112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC--C-Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP--G-MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~--g-~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.++|.....  . .+..   ..+..|    +...+.+.+.+.+.. .+.+|+++.
T Consensus        84 g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS  144 (334)
T PRK07109         84 GPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS  144 (334)
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence            3689999999864211  1 1111   122333    445556666665543 356666654

>PRK07890 short chain dehydrogenase; Provisional

Probab=97.09  E-value=0.017  Score=49.57  Aligned_cols=115  Identities=16%  Similarity=0.147  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHh-------hh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LEN-------AL   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~-------a~   86 (258)
                      .++|.|+||+|.+|.+++..|+.+|.  +|++.|+++...  ...++.....  .+..+. .-+|   ++.       .+
T Consensus         5 ~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (258)
T PRK07890          5 GKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLGR--RALAVPTDITDEDQCANLVALALERF   80 (258)
T ss_pred             CCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhCC--ceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999997  899999876421  1122221111  111111 1112   222       12


Q ss_pred             CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tN  138 (258)
                      ...|+||+++|....  +  ..+.   .+.+..|+.-...+.+.+.++-  ..+.++++|.
T Consensus        81 g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS  141 (258)
T PRK07890         81 GRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS  141 (258)
T ss_pred             CCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence            468999999986422  1  1122   2234555554445555544321  1246666654

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=97.08  E-value=0.012  Score=50.14  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=32.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.++|.|+||+|.+|.+++..|..+|.  +|++++++..
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~   41 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGD   41 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            345899999999999999999998887  8999998754

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.06  E-value=0.014  Score=49.46  Aligned_cols=37  Identities=19%  Similarity=0.221  Sum_probs=30.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .++++|.|+||+|.+|+.++..|.++|.  ++.+.....
T Consensus         4 ~~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~   40 (249)
T PRK12825          4 LMGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD   40 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence            3456899999999999999999999887  666655443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.06  E-value=0.0032  Score=57.38  Aligned_cols=63  Identities=25%  Similarity=0.369  Sum_probs=45.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++|+|||. |.+|+.++..|. ..|.  +|..+|.......    ..     .+.   ...++++++++||+|+++.
T Consensus       145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~l  208 (332)
T PRK08605        145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHM  208 (332)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeC
Confidence            3469999998 999999999884 3454  8999997653211    11     011   1246788999999999986

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=97.06  E-value=0.011  Score=50.68  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|++|+.++..|..+|.  +|++++++..
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~~   36 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGEA   36 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4799999999999999999998887  8999998764

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=97.05  E-value=0.011  Score=53.19  Aligned_cols=115  Identities=14%  Similarity=0.071  Sum_probs=64.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (258)
                      ++++|.|+||+|.+|.+++..|+..|.  +|++.+++..+..  ..++...  ...+..+. .-.|   +.+.++     
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~   80 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL   80 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999886  8999998764221  2223211  11122111 1112   222232     


Q ss_pred             --CCCEEEEcCCCCCC----CCCch---hhHHHHhHH----HHHHHHHHhhhhCC-CcEEEEec
Q 025075           88 --GMDLVIIPAGVPRK----PGMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLIS  137 (258)
Q Consensus        88 --~aDiVIi~ag~~~~----~g~~r---~d~~~~n~~----i~~~i~~~i~~~~p-~a~viv~t  137 (258)
                        ..|++|..||....    ...+.   ...+..|+.    +.+.+.+.+.+... .+.|+++|
T Consensus        81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs  144 (322)
T PRK07453         81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG  144 (322)
T ss_pred             CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence              48999999986321    11121   233455654    44555555555432 34566555

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.04  E-value=0.0032  Score=61.92  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=84.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCch---H-hhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~---~-~a~~~aDiVIi~   95 (258)
                      ..+|.|+|. |.+|+.++..|...++  +++.+|.|+++-+  .+.+...+  +- +-..++.   + ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~--~~~~~g~~--v~-~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISAVN--LMRKYGYK--VY-YGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHHHH--HHHhCCCe--EE-EeeCCCHHHHHhcCCccCCEEEEE
Confidence            368999998 9999999999998887  8999999875322  22222211  11 1111221   1 236799999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~  174 (258)
                      .+..           +.|.    .++..+++..|+..++. +.||.+      .+.+++.+   .+.++-=+..-+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~~r~~~p~~~IiaRa~~~~~------~~~L~~~G---a~~vv~e~~es~l~l~  527 (601)
T PRK03659        472 CNEP-----------EDTM----KIVELCQQHFPHLHILARARGRVE------AHELLQAG---VTQFSRETFSSALELG  527 (601)
T ss_pred             eCCH-----------HHHH----HHHHHHHHHCCCCeEEEEeCCHHH------HHHHHhCC---CCEEEccHHHHHHHHH
Confidence            5311           2333    35566778889976554 567765      23445543   3455433433345555


Q ss_pred             HHHHHHhCCCCCcee
Q 025075          175 TFVAEVLGLDPRDVD  189 (258)
Q Consensus       175 ~~la~~l~v~~~~v~  189 (258)
                      ...=..+|+++++++
T Consensus       528 ~~~L~~lg~~~~~~~  542 (601)
T PRK03659        528 RKTLVSLGMHPHQAQ  542 (601)
T ss_pred             HHHHHHcCCCHHHHH
Confidence            556677788877763

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.04  E-value=0.0033  Score=60.23  Aligned_cols=99  Identities=17%  Similarity=0.158  Sum_probs=62.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC----CCCCeEEEEeCCCchHhhhCC---C
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTGAVVRGFLGQPQLENALTG---M   89 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~----~~~~~v~~~~~~~d~~~a~~~---a   89 (258)
                      +..+++|++||- |.+|+.++..|+..|+  +|..||++.++...  +.+.    ... .+   ....++++.++.   +
T Consensus         3 ~~~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k~~~--l~~~~~~~Ga~-~~---~~a~s~~e~v~~l~~~   73 (493)
T PLN02350          3 SAALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSKVDE--TVERAKKEGNL-PL---YGFKDPEDFVLSIQKP   73 (493)
T ss_pred             CCCCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHHHHH--HHHhhhhcCCc-cc---ccCCCHHHHHhcCCCC
Confidence            345679999997 9999999999999998  99999997653322  2211    110 11   112355666654   9


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  139 (258)
                      |+||++...    +           +.++++...+... .|..++|..||-
T Consensus        74 dvIi~~v~~----~-----------~aV~~Vi~gl~~~l~~G~iiID~sT~  109 (493)
T PLN02350         74 RSVIILVKA----G-----------APVDQTIKALSEYMEPGDCIIDGGNE  109 (493)
T ss_pred             CEEEEECCC----c-----------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence            999998621    1           1223333334443 466677777664

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.04  E-value=0.0067  Score=53.71  Aligned_cols=72  Identities=22%  Similarity=0.196  Sum_probs=46.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +++++||+|||. |.+|..++..|... +-. +|+ ++|+++++..  ++.... . ...   ..+++++.++++|+|++
T Consensus         3 ~m~~irIGIIG~-G~IG~~~a~~L~~~~~~~-el~aV~dr~~~~a~--~~a~~~-g-~~~---~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          3 SRPELRVAIAGL-GAIGKAIAQALDRGLPGL-TLSAVAVRDPQRHA--DFIWGL-R-RPP---PVVPLDQLATHADIVVE   73 (271)
T ss_pred             CCCeeEEEEECc-cHHHHHHHHHHHhcCCCe-EEEEEECCCHHHHH--HHHHhc-C-CCc---ccCCHHHHhcCCCEEEE
Confidence            356689999998 99999999888763 222 554 8888764322  222111 0 001   12456777899999999


Q ss_pred             cCC
Q 025075           95 PAG   97 (258)
Q Consensus        95 ~ag   97 (258)
                      +++
T Consensus        74 ~tp   76 (271)
T PRK13302         74 AAP   76 (271)
T ss_pred             CCC
Confidence            974

>PRK07023 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.0025  Score=54.56  Aligned_cols=36  Identities=14%  Similarity=0.183  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ||+|.|+||+|.+|..++..|+..|.  +|++++++..
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~~   36 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSRH   36 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCcc
Confidence            56999999999999999999998887  8999998754

>PRK08251 short chain dehydrogenase; Provisional

Probab=97.04  E-value=0.018  Score=49.22  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|.+++..|...|.  +|++.+++..
T Consensus         3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~   37 (248)
T PRK08251          3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTD   37 (248)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            4799999999999999999998886  8999998764

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.03  E-value=0.012  Score=50.38  Aligned_cols=33  Identities=15%  Similarity=0.163  Sum_probs=28.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      ++|.|+||+|.+|++++..|...|.  +|++.+.+
T Consensus         6 k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~   38 (253)
T PRK08642          6 QTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ   38 (253)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence            4799999999999999999998886  77776543

>PRK05866 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.016  Score=51.52  Aligned_cols=35  Identities=17%  Similarity=0.197  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|++.+++.+
T Consensus        41 k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~~   75 (293)
T PRK05866         41 KRILLTGASSGIGEAAAEQFARRGA--TVVAVARRED   75 (293)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            5799999999999999999999887  8999998764

>PRK05693 short chain dehydrogenase; Provisional

Probab=97.03  E-value=0.0059  Score=53.34  Aligned_cols=36  Identities=25%  Similarity=0.182  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |+++.|+||+|.+|..++..|...|.  +|++.+++..
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~   36 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGY--EVWATARKAE   36 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35799999999999999999998887  8999998753

>PRK07825 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.0044  Score=54.07  Aligned_cols=114  Identities=18%  Similarity=0.138  Sum_probs=64.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCch-------HhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQL-------ENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~-------~~a~~~a   89 (258)
                      .++|.|+||+|.+|..++..|+..|.  .|++.+++++...  ..++....   .+. ++....++       .+.+.+.
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLVV---GGPLDVTDPASFAAFLDAVEADLGPI   79 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccce---EEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            35899999999999999999999887  7999998764221  11221110   000 01111111       1223568


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |++|.++|......   .+   -...+..|+.    ..+.+.+.+.+.+ .+.|+++|.-
T Consensus        80 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  138 (273)
T PRK07825         80 DVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRG-RGHVVNVASL  138 (273)
T ss_pred             CEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEEcCc
Confidence            99999998743211   11   1223455554    4445555555433 4567666643

>PRK06701 short chain dehydrogenase; Provisional

Probab=97.02  E-value=0.023  Score=50.40  Aligned_cols=116  Identities=14%  Similarity=0.145  Sum_probs=67.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEeC----CCchHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG----QPQLENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~----~~d~~~a~------   86 (258)
                      .++|.|+||+|.+|++++..|+..|.  +|++++++...   .....+....  ..+..+..    ..++.+.+      
T Consensus        46 ~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~  121 (290)
T PRK06701         46 GKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRE  121 (290)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHH
Confidence            45899999999999999999999887  89999987531   1111222111  11211111    11222222      


Q ss_pred             -CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075           87 -TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  139 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  139 (258)
                       ...|+||.++|....  +  ..+.   ...+..|+.-...+.+.+.++ .+.+.+|++|.-
T Consensus       122 ~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~  183 (290)
T PRK06701        122 LGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSI  183 (290)
T ss_pred             cCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecc
Confidence             357999999986321  1  1111   234667777666666666553 345566666653

>PRK06057 short chain dehydrogenase; Provisional

Probab=97.01  E-value=0.009  Score=51.56  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|+++|++..
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~~   42 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDPE   42 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            345899999999999999999999887  8999998764

>PLN02780 ketoreductase/ oxidoreductase

Probab=97.01  E-value=0.0086  Score=54.14  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ..+.|+||+|.+|.+++..|+.+|.  +|++++++++
T Consensus        54 ~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~   88 (320)
T PLN02780         54 SWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPD   88 (320)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHH
Confidence            4789999999999999999999987  8999999875

>PRK06128 oxidoreductase; Provisional

Probab=97.01  E-value=0.044  Score=48.74  Aligned_cols=115  Identities=22%  Similarity=0.222  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHHHHHhcCCCCCeEEEEe-CCC---chHhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL-GQP---QLENA------   85 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~~dl~~~~~~~~v~~~~-~~~---d~~~a------   85 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++...    .....+.....  ....+. .-.   +++++      
T Consensus        55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~  130 (300)
T PRK06128         55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEGR--KAVALPGDLKDEAFCRQLVERAVK  130 (300)
T ss_pred             CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcCC--eEEEEecCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999999887  78887765421    11112222111  111111 011   12222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC----Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           86 -LTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        86 -~~~aDiVIi~ag~~~~~g----~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       +...|++|.++|.....+    .+   -...+..|+.-...+++.+.++- +.+.|++++.
T Consensus       131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS  192 (300)
T PRK06128        131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS  192 (300)
T ss_pred             HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence             346899999998642111    12   23356667766666666665542 3456766654

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=97.01  E-value=0.012  Score=50.52  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+++.|+||+|.+|+.++..|...|.  +++++|++.
T Consensus         8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~   42 (252)
T PRK08220          8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF   42 (252)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence            35899999999999999999999887  899998865

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.00  E-value=0.0056  Score=56.09  Aligned_cols=72  Identities=22%  Similarity=0.381  Sum_probs=46.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++||+|+||+|.+|..+...|..+++ ..+|..+......++..+...    ..+.. . ..+ .++++++|+||++++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v-~-~~~-~~~~~~~D~vf~a~p   78 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTV-E-ELT-EDSFDGVDIALFSAG   78 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEE-E-eCC-HHHHcCCCEEEECCC
Confidence            457999999999999999988887543 347776655443344332221    12221 1 122 256799999999875

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=97.00  E-value=0.021  Score=49.27  Aligned_cols=35  Identities=17%  Similarity=0.186  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .++|.|+||+|.+|..++..|+..|.  .|++++++.
T Consensus        15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~   49 (258)
T PRK06935         15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT   49 (258)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence            35899999999999999999999887  899998873

>PRK12746 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.027  Score=48.34  Aligned_cols=114  Identities=16%  Similarity=0.176  Sum_probs=61.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      ++|.|+||+|.+|++++..|..+|.  ++.+. +++.+.  ....++....  ..+..+. .-.|   +.++++      
T Consensus         7 ~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~~   82 (254)
T PRK12746          7 KVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNEL   82 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999998886  67665 444321  1111222111  1111111 1112   222222      


Q ss_pred             -------CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 -------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 -------~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                             +.|++|+++|......   .+.   ...+..|+.-...+.+.+.++. ..+.++++|.
T Consensus        83 ~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS  147 (254)
T PRK12746         83 QIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS  147 (254)
T ss_pred             ccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence                   5899999998643211   111   2234566666555656555442 2345665554

>PRK07454 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.012  Score=50.26  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++++.|+|++|.+|..++..|+.+|.  +|+++++++.
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~   41 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQD   41 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            456899999999999999999999887  8999998764

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.99  E-value=0.0079  Score=53.94  Aligned_cols=70  Identities=20%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +....||+|+|+ |.+|..++..|...|.  +|..+|++......  ......  ..  . ...++.+.++++|+||.+.
T Consensus       149 ~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~--~~~~G~--~~--~-~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        149 TIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLAR--ITEMGL--SP--F-HLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHcCC--ee--e-cHHHHHHHhCCCCEEEECC
Confidence            334579999998 9999999999998885  89999997642111  111111  11  1 1135667889999999986

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.019  Score=49.43  Aligned_cols=113  Identities=18%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENA-------LT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.+++.+..  ...++.+..  ..+..+.. -+|   +.++       +.
T Consensus        10 k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867         10 KRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999876422  122232211  11211111 111   2222       24


Q ss_pred             CCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075           88 GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..|++|.++|.....   ..+..   +.+..|+.    +.+.+.+.+.+....+.+++++
T Consensus        86 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s  145 (253)
T PRK05867         86 GIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA  145 (253)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence            789999999864321   11211   23345544    3444445554444345666554

>PRK12743 oxidoreductase; Provisional

Probab=96.99  E-value=0.052  Score=46.82  Aligned_cols=33  Identities=15%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      .+|.|+||+|.+|.+++..|+..|.  +|++.+..
T Consensus         3 k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~   35 (256)
T PRK12743          3 QVAIVTASDSGIGKACALLLAQQGF--DIGITWHS   35 (256)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCC
Confidence            4799999999999999999999987  78777543

>PLN03139 formate dehydrogenase; Provisional

Probab=96.98  E-value=0.0061  Score=56.67  Aligned_cols=98  Identities=21%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.||+.++..|..-|.  +|..||+........  .+.    .+..   ..++++.+++||+|+++.. 
T Consensus       198 ~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lP-  264 (386)
T PLN03139        198 EGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTP-  264 (386)
T ss_pred             CCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCC-
Confidence            3468999998 9999999999987776  899999864211111  111    1111   2367889999999999852 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                       ..+ +        +..++.  .+.+....|.+++|+++  ..+|
T Consensus       265 -lt~-~--------T~~li~--~~~l~~mk~ga~lIN~aRG~iVD  297 (386)
T PLN03139        265 -LTE-K--------TRGMFN--KERIAKMKKGVLIVNNARGAIMD  297 (386)
T ss_pred             -CCH-H--------HHHHhC--HHHHhhCCCCeEEEECCCCchhh
Confidence             111 1        111221  13344445889999886  4455

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.98  E-value=0.0099  Score=50.72  Aligned_cols=35  Identities=34%  Similarity=0.472  Sum_probs=31.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus        28 ~~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   62 (212)
T PRK08644         28 KAKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV   62 (212)
T ss_pred             CCCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            348999998 9999999999999886 6899999883

>PRK06197 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.015  Score=51.71  Aligned_cols=116  Identities=23%  Similarity=0.156  Sum_probs=65.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhh-------h
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENA-------L   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~   86 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++.+...  ..++........+..+.. -.|   +.+.       +
T Consensus        16 ~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         16 GRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999887  8999998764221  122321110112221111 112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC-Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g-~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|++||....+. .+   -...+..|+.-    .+.+.+.+++.. .+.|+++|.
T Consensus        94 ~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vSS  152 (306)
T PRK06197         94 PRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVSS  152 (306)
T ss_pred             CCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEECC
Confidence            35899999998632221 11   12234455443    666666666543 356666653

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=96.98  E-value=0.0065  Score=53.20  Aligned_cols=123  Identities=18%  Similarity=0.216  Sum_probs=77.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC--h------hHHHHHhcCCCCCeEEEEeCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT--P------GVTADISHMDTGAVVRGFLGQ   79 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~--~------g~~~dl~~~~~~~~v~~~~~~   79 (258)
                      +-+..||.+.|| |..|..++.+|...    |+-     +++.|+|.+.-  .      .....+.+...+...     .
T Consensus        22 ~l~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~-----~   95 (255)
T PF03949_consen   22 KLSDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKD-----W   95 (255)
T ss_dssp             -GGG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT-------
T ss_pred             CHHHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCccccc-----c
Confidence            344469999998 99999998877654    773     68999998641  1      112223333221111     1


Q ss_pred             CchHhhhCCC--CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC--CcHHHHHHHHHHhC
Q 025075           80 PQLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG  155 (258)
Q Consensus        80 ~d~~~a~~~a--DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd--~~~~i~t~~~~~~~  155 (258)
                      .++.|+++++  |++|=+.|.+   |-           +-+++++.|.+++++.+|+-.|||..  -.++   +-+++  
T Consensus        96 ~~L~eav~~~kPtvLIG~S~~~---g~-----------ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p---eda~~--  156 (255)
T PF03949_consen   96 GSLLEAVKGAKPTVLIGLSGQG---GA-----------FTEEVVRAMAKHNERPIIFPLSNPTPKAECTP---EDAYE--  156 (255)
T ss_dssp             SSHHHHHHCH--SEEEECSSST---TS-----------S-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H---HHHHH--
T ss_pred             cCHHHHHHhcCCCEEEEecCCC---Cc-----------CCHHHHHHHhccCCCCEEEECCCCCCcccCCH---HHHHh--
Confidence            4789999999  9988776533   31           13789999999999999999999987  5443   33444  


Q ss_pred             CCCCCcE-EEE
Q 025075          156 TYDPKKL-LGV  165 (258)
Q Consensus       156 ~~~~~kv-iG~  165 (258)
                       +...++ |++
T Consensus       157 -~t~g~ai~At  166 (255)
T PF03949_consen  157 -WTDGRAIFAT  166 (255)
T ss_dssp             -TTTSEEEEEE
T ss_pred             -hCCceEEEec
Confidence             334454 465

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>PRK12827 short chain dehydrogenase; Provisional

Probab=96.98  E-value=0.027  Score=47.92  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=65.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHH----HHHhcCCCCCeEEEEeC----CCchHhhh--
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT----ADISHMDTGAVVRGFLG----QPQLENAL--   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~----~dl~~~~~~~~v~~~~~----~~d~~~a~--   86 (258)
                      +.++|.|+||+|++|..++..|+.+|.  ++++++....  ....    .++....  ..+..+..    ..++.+.+  
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~   80 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAAG--GKALGLAFDVRDFAATRAALDA   80 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHH
Confidence            346899999999999999999999887  8888876432  1111    1121111  11211111    11122222  


Q ss_pred             -----CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhh----hhCCCcEEEEecCC
Q 025075           87 -----TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISNP  139 (258)
Q Consensus        87 -----~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~----~~~p~a~viv~tNP  139 (258)
                           ...|.||.++|......   .+.   ...+..|..-...+++.+.    +......+++++..
T Consensus        81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~  148 (249)
T PRK12827         81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASV  148 (249)
T ss_pred             HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence                 46899999998643211   111   2245667776666666665    12223445555543

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.97  E-value=0.015  Score=50.09  Aligned_cols=35  Identities=26%  Similarity=0.267  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..
T Consensus        10 k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~~   44 (254)
T PRK08085         10 KNILITGSAQGIGFLLATGLAEYGA--EIIINDITAE   44 (254)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCHH
Confidence            4799999999999999999999887  8999998764

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=96.97  E-value=0.022  Score=48.20  Aligned_cols=116  Identities=17%  Similarity=0.218  Sum_probs=64.8

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe--CCCchHhhh-------CCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL--GQPQLENAL-------TGMD   90 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~--~~~d~~~a~-------~~aD   90 (258)
                      |.|+|++|.+|+.++..|..+|.  +|.+.+++.. .  ....++.+...........  ...++.+.+       ...|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   78 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPID   78 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999887  8999987642 1  1222232221111111111  111222333       3469


Q ss_pred             EEEEcCCCCCCC---CC---chhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCC
Q 025075           91 LVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV  140 (258)
Q Consensus        91 iVIi~ag~~~~~---g~---~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPv  140 (258)
                      +||+++|.....   +.   .-.+.+..|+.....+.+.+.++   ...+.++++|...
T Consensus        79 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~  137 (239)
T TIGR01830        79 ILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVV  137 (239)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCcc
Confidence            999999864211   11   12334567777666666666543   2234666666543

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.014  Score=52.48  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.+++.|+||++.+|..++..|+..|.  +|++.+++.+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~   49 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRA   49 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            345899999999999999999999886  8999998765

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.97  E-value=0.011  Score=48.80  Aligned_cols=33  Identities=39%  Similarity=0.587  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ||+|+|+ |.+|+.++..|+..|. +++.|+|.+.
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV   33 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence            6899998 9999999999999886 6899999875

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=96.95  E-value=0.023  Score=48.16  Aligned_cols=116  Identities=20%  Similarity=0.284  Sum_probs=63.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe-CCCc---hHhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQ---LENA------   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~-~~~d---~~~a------   85 (258)
                      +.++|.|+|++|++|++++..|...|.  +|++...+...   ....++....  ..+..+. .-.|   +.++      
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   79 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA   79 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998886  77666665431   1111222111  1111111 1111   2222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC---Cchh---hHHHHhHHHHHHHHHHhhhhC---CCcEEEEecC
Q 025075           86 -LTGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKCC---PNATVNLISN  138 (258)
Q Consensus        86 -~~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i~~~i~~~i~~~~---p~a~viv~tN  138 (258)
                       +.+.|.||+++|......   .+..   ..+..|+.....+.+.+.++.   +...++++|.
T Consensus        80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss  142 (248)
T PRK05557         80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS  142 (248)
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence             236899999998643211   1111   234456665555665555442   2345555554

>PRK07904 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.014  Score=50.68  Aligned_cols=115  Identities=15%  Similarity=0.147  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCCh-h--HHHHHhcCCCCCeEEEE--eC--CCchHhhh-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTP-G--VTADISHMDTGAVVRGF--LG--QPQLENAL-----   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~-g--~~~dl~~~~~~~~v~~~--~~--~~d~~~a~-----   86 (258)
                      .++|.|+||+|.+|.+++..|+.+| .  .|++.+++... .  ...++..... ..+..+  ..  ..+.++.+     
T Consensus         8 ~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~~-~~v~~~~~D~~~~~~~~~~~~~~~~   84 (253)
T PRK07904          8 PQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAGA-SSVEVIDFDALDTDSHPKVIDAAFA   84 (253)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcCC-CceEEEEecCCChHHHHHHHHHHHh
Confidence            3479999999999999999988875 5  89999987642 1  1223322111 012111  11  11211112     


Q ss_pred             -CCCCEEEEcCCCCCCCCCc---h---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPGMT---R---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g~~---r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       .+.|++|.++|........   .   .+.+..|+.    +.+.+.+.+.+.+. +.++++|.
T Consensus        85 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~isS  146 (253)
T PRK07904         85 GGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMSS  146 (253)
T ss_pred             cCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence             2799999998875322111   1   123555654    33556667666543 45555543

>PLN02996 fatty acyl-CoA reductase

Probab=96.95  E-value=0.023  Score=54.58  Aligned_cols=106  Identities=17%  Similarity=0.101  Sum_probs=65.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--h-hHHH--HHhcC---------C---C----CCeEEEEeC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--P-GVTA--DISHM---------D---T----GAVVRGFLG   78 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~--~-g~~~--dl~~~---------~---~----~~~v~~~~~   78 (258)
                      +.|.|+||+|++|++++..|+.. +-+..|+++.+...  . .+.+  ++...         .   .    ..++..+.+
T Consensus        12 k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~i~G   91 (491)
T PLN02996         12 KTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTPVPG   91 (491)
T ss_pred             CeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEEEec
Confidence            37999999999999999877653 44567888776542  1 0110  11110         0   0    023333322


Q ss_pred             C----------Cc-hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh
Q 025075           79 Q----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC  127 (258)
Q Consensus        79 ~----------~d-~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~  127 (258)
                      .          .+ +++.++++|+||++|+... ......+....|+.....+++...+.
T Consensus        92 Dl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~  150 (491)
T PLN02996         92 DISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKC  150 (491)
T ss_pred             ccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence            1          11 3456689999999987543 22334556778999999998888765

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.95  E-value=0.0073  Score=51.41  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ||+.|+||+|.+|++++..|...|.  +|++++++.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~~   35 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARRD   35 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            5899999999999999999998887  8999998754

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=96.94  E-value=0.0091  Score=51.79  Aligned_cols=36  Identities=19%  Similarity=0.251  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..
T Consensus         9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~~   44 (266)
T PRK06171          9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHGG   44 (266)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            35799999999999999999999987  8999998764

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.94  E-value=0.0022  Score=58.13  Aligned_cols=75  Identities=25%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC--CeEEEEeCCCchHh-hhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLEN-ALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~~~d~~~-a~~~aDiVIi~   95 (258)
                      +|+||+|+||+|..|.-+...|...+.+ |+.++...+..+..+.-.|....  ..+...  +.|.++ ..++||+||++
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEe
Confidence            4679999999999999999999988766 58888776534443322333221  112211  122233 24569999998


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus        78 l   78 (349)
T COG0002          78 L   78 (349)
T ss_pred             c
Confidence            4

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=96.93  E-value=0.064  Score=46.24  Aligned_cols=114  Identities=14%  Similarity=0.210  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCC---chHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~---d~~~a~-------~~a   89 (258)
                      +.+.|+|++|.+|.+++..|+..|.  +|+++|.........++....  ..+..+. .-+   ++.+.+       ...
T Consensus        11 k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   86 (253)
T PRK08993         11 KVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGHI   86 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999999887  888888755322222232211  1111111 111   222222       368


Q ss_pred             CEEEEcCCCCCCC---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|.++|.....   ..+.   .+.+..|+.-    .+.+.+.+.+.++.+.++++|.
T Consensus        87 D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS  145 (253)
T PRK08993         87 DILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS  145 (253)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence            9999999864311   1111   2334555543    3444555544445577776664

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.92  E-value=0.008  Score=54.41  Aligned_cols=65  Identities=20%  Similarity=0.180  Sum_probs=43.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||+ |.+|.+++..|...|+  +++.++....... ..+...    .+..    .+..+++++||+|+++.
T Consensus         3 ~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~----Gv~~----~s~~ea~~~ADiVvLaV   67 (314)
T TIGR00465         3 GKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATED----GFKV----GTVEEAIPQADLIMNLL   67 (314)
T ss_pred             cCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHC----CCEE----CCHHHHHhcCCEEEEeC
Confidence            358999998 9999999999999887  6666554332111 111111    1111    23567899999999997

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.012  Score=50.29  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCch----------HhhhCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL----------ENALTG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~~   88 (258)
                      .++|.|+||+|.+|.+++..|...|.  +|++.+++.+...  ++.... ...+..+. ...|.          .+.+..
T Consensus         6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (249)
T PRK06500          6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLE--AARAEL-GESALVIRADAGDVAAQKALAQALAEAFGR   80 (249)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHH--HHHHHh-CCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            35899999999999999999999987  8999998753211  111100 01111111 11121          122346


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEec
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLIS  137 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~t  137 (258)
                      .|+||.++|......   .+.   ...+..|+.-...+.+.+.++ ...+.+++++
T Consensus        81 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~  136 (249)
T PRK06500         81 LDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG  136 (249)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence            899999998643211   122   234566776666666666543 1223444444

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=96.92  E-value=0.032  Score=55.63  Aligned_cols=129  Identities=21%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             HHhHHhhcC---CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-C---
Q 025075            8 RQAKCRAKG---GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-G---   78 (258)
Q Consensus         8 ~~~~~~~~~---~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~---   78 (258)
                      ++++-+...   +.+.+++.|+||+|.+|.+++..|...|.  +|++.|++....  ...++........+..+. .   
T Consensus       399 e~~kl~~~~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd  476 (676)
T TIGR02632       399 EEAKLRRMPKEKTLARRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD  476 (676)
T ss_pred             hHHhhccCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence            555554432   22335799999999999999999999887  899999876421  112222110000111111 1   


Q ss_pred             CCchHhhhC-------CCCEEEEcCCCCCCCC---Cchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           79 QPQLENALT-------GMDLVIIPAGVPRKPG---MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        79 ~~d~~~a~~-------~aDiVIi~ag~~~~~g---~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..++.++++       +.|++|.++|......   .+..+   .+..|+    .+.+...+.+.+.+..+.++++|.
T Consensus       477 ~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS  553 (676)
T TIGR02632       477 EQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIAS  553 (676)
T ss_pred             HHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence            112233333       6899999998643211   11111   122333    234556666665554555655543

>PLN02928 oxidoreductase family protein

Probab=96.92  E-value=0.0047  Score=56.63  Aligned_cols=103  Identities=24%  Similarity=0.189  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh--cCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS--HMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~--~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+.........+.  ...............++++.++.||+|+++..
T Consensus       159 gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lP  235 (347)
T PLN02928        159 GKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCT  235 (347)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCC
Confidence            469999998 9999999999988787  999999863211111110  00000000000012368899999999999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .  .+ .+        ..++.  .+.+.+..|.+++|+++=
T Consensus       236 l--t~-~T--------~~li~--~~~l~~Mk~ga~lINvaR  263 (347)
T PLN02928        236 L--TK-ET--------AGIVN--DEFLSSMKKGALLVNIAR  263 (347)
T ss_pred             C--Ch-Hh--------hcccC--HHHHhcCCCCeEEEECCC
Confidence            2  11 11        11111  233444468899999873

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=96.91  E-value=0.0098  Score=59.07  Aligned_cols=91  Identities=19%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~   95 (258)
                      .+.|||.|+||+|++|++++..|...|+  ++... .       .|+.+.            ..+...++  +.|+||++
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~------------~~v~~~i~~~~pd~Vih~  435 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDR------------SSLLADIRNVKPTHVFNA  435 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccH------------HHHHHHHHhhCCCEEEEC
Confidence            3457999999999999999999988775  55211 0       011110            01112232  68999999


Q ss_pred             CCCCCCCC-----CchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075           96 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus        96 ag~~~~~g-----~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      |+....+.     ....+.+..|+.....+++.+.+.+..
T Consensus       436 Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~  475 (668)
T PLN02260        436 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL  475 (668)
T ss_pred             CcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence            97543221     134566788999999999999987653

>PRK06138 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.019  Score=49.04  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|..++..|+..|.  +|++++++.+
T Consensus         5 ~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~   40 (252)
T PRK06138          5 GRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDAE   40 (252)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCHH
Confidence            35899999999999999999998886  8999998764

>PRK07577 short chain dehydrogenase; Provisional

Probab=96.90  E-value=0.012  Score=49.78  Aligned_cols=35  Identities=20%  Similarity=0.125  Sum_probs=31.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|..++..|...|.  +|++++++..
T Consensus         4 k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~~   38 (234)
T PRK07577          4 RTVLVTGATKGIGLALSLRLANLGH--QVIGIARSAI   38 (234)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            5899999999999999999999886  8999998754

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.90  E-value=0.0029  Score=57.80  Aligned_cols=72  Identities=21%  Similarity=0.386  Sum_probs=46.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +|+||+|+||+|.+|.-+...|.++++ ..+|..+...+..|+.+.+..  .  .+.. .. .+. ++++++|+||++.+
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~--~--~l~~-~~-~~~-~~~~~vD~vFla~p   75 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG--K--NLRV-RE-VDS-FDFSQVQLAFFAAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC--c--ceEE-ee-CCh-HHhcCCCEEEEcCC
Confidence            457999999999999999999986433 347777755443444333322  1  1221 11 122 34789999999864

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.90  E-value=0.0033  Score=57.56  Aligned_cols=76  Identities=24%  Similarity=0.287  Sum_probs=42.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +|+||+|+||+|.+|..++..|...+.++-+.+.|. ...++.+.-.+........ .+. ..+. .+.+++|+|+++..
T Consensus         1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~-~~~g~~l~~~~~~~~~~~~~~~~-~~~~-~~~~~vD~Vf~alP   77 (343)
T PRK00436          1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR-SSAGKPLSDVHPHLRGLVDLVLE-PLDP-EILAGADVVFLALP   77 (343)
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc-cccCcchHHhCcccccccCceee-cCCH-HHhcCCCEEEECCC
Confidence            357999999999999999988887654433455663 3222221111111110000 111 1121 25678999999764

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.89  E-value=0.06  Score=46.98  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.+
T Consensus        10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~~   45 (278)
T PRK08277         10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQE   45 (278)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35799999999999999999999887  8999998764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=96.89  E-value=0.017  Score=49.66  Aligned_cols=117  Identities=12%  Similarity=0.156  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~------   86 (258)
                      +.++|.|+||+|.+|+.++..|...|.  +|++++++.+.  ....++.....  .+..+.    ...++..++      
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~   85 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAGG--AAEALAFDIADEEAVAAAFARIDAE   85 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999998887  89999997642  11222322111  111111    111222222      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCchh---hHHHHhHHHHHHHH----HHhhhhCCCcEEEEecCCC
Q 025075           87 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLC----EGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~i~~~i~----~~i~~~~p~a~viv~tNPv  140 (258)
                       ...|++|.++|.....   ..+..   ..+..|+.-...+.    +.+.+. ..+.+++++...
T Consensus        86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~  149 (256)
T PRK06124         86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA  149 (256)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence             3468999999864221   11111   23555655444444    444333 345677666543

>PRK06953 short chain dehydrogenase; Provisional

Probab=96.88  E-value=0.01  Score=50.15  Aligned_cols=115  Identities=16%  Similarity=0.156  Sum_probs=63.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh---hC--CCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA---LT--GMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a---~~--~aDiVI   93 (258)
                      |+++.|+|++|.+|++++..|+..|.  +|+++|++.+...  ++...... .+. ++....++++.   +.  ..|+||
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~~--~~~~~~~~-~~~~D~~~~~~v~~~~~~~~~~~~d~vi   75 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAALA--ALQALGAE-ALALDVADPASVAGLAWKLDGEALDAAV   75 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHHH--HHHhccce-EEEecCCCHHHHHHHHHHhcCCCCCEEE
Confidence            35789999999999999999988886  8999998754222  22221111 111 11111122221   23  479999


Q ss_pred             EcCCCCCC---C--CCch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecCC
Q 025075           94 IPAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP  139 (258)
Q Consensus        94 i~ag~~~~---~--g~~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tNP  139 (258)
                      +++|....   +  ..+.   ...+..|+.-...+.+.+.++-  ..+.+++++..
T Consensus        76 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~  131 (222)
T PRK06953         76 YVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSR  131 (222)
T ss_pred             ECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCc
Confidence            99986421   1  1122   2345566665555555544321  23455555443

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.88  E-value=0.0084  Score=52.73  Aligned_cols=69  Identities=12%  Similarity=0.225  Sum_probs=45.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh------CC-CCEEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TG-MDLVII   94 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~-aDiVIi   94 (258)
                      ||.|+||+|++|++++..|...|+  +|....+++......   .... ... .+....++.+++      ++ +|.|++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~~~~~~~---~~~~-~~~-d~~d~~~l~~a~~~~~~~~g~~d~v~~   73 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSSSSSAGP---NEKH-VKF-DWLDEDTWDNPFSSDDGMEPEISAVYL   73 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCCccccCC---CCcc-ccc-cCCCHHHHHHHHhcccCcCCceeEEEE
Confidence            589999999999999999998887  899998876421100   0000 001 111223455666      67 999998


Q ss_pred             cCC
Q 025075           95 PAG   97 (258)
Q Consensus        95 ~ag   97 (258)
                      +++
T Consensus        74 ~~~   76 (285)
T TIGR03649        74 VAP   76 (285)
T ss_pred             eCC
Confidence            764

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK08589 short chain dehydrogenase; Validated

Probab=96.88  E-value=0.035  Score=48.53  Aligned_cols=116  Identities=17%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCe-EE-EEeCCCchHhh-------hCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAV-VR-GFLGQPQLENA-------LTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~-v~-~~~~~~d~~~a-------~~~a   89 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.++++. .....++.+...... +. ++....++.+.       +...
T Consensus         6 ~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~i   83 (272)
T PRK08589          6 NKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGRV   83 (272)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            35799999999999999999999887  8999998732 112223322111101 11 11111112222       2357


Q ss_pred             CEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |++|.++|.....+    .+.   ...+..|+.    +.+.+.+.+.+.  .+.+++++..
T Consensus        84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~  142 (272)
T PRK08589         84 DVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF  142 (272)
T ss_pred             CEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence            99999998753221    111   122334443    445555555443  3677766653

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=96.88  E-value=0.018  Score=52.11  Aligned_cols=123  Identities=19%  Similarity=0.305  Sum_probs=72.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh----C-CCCcEEEEEeCCCC-hh---HHHHHh---cCC--------CCCeEEEEe
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKI----N-PLVSVLHLYDVVNT-PG---VTADIS---HMD--------TGAVVRGFL   77 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~----~-~~~~ei~L~D~~~~-~g---~~~dl~---~~~--------~~~~v~~~~   77 (258)
                      +.+.||+|||+ |..|++++..+..    . -...+|.+|-..+. .+   ...|.-   |..        .+..+.   
T Consensus        19 ~~~~kV~ivGs-GnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~Nvv---   94 (372)
T KOG2711|consen   19 RDPLKVCIVGS-GNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVV---   94 (372)
T ss_pred             cCceEEEEEcc-ChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeE---
Confidence            34579999997 9999999987654    2 12246777765443 22   222221   111        122222   


Q ss_pred             CCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCc-----HHHHHHHH
Q 025075           78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST-----VPIAAEVF  151 (258)
Q Consensus        78 ~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~-----~~i~t~~~  151 (258)
                      ..+|+.++++|||++|+..  |              ...+.+++++|..+- |++..|..+--+++-     ..++++.+
T Consensus        95 Av~dl~ea~~dADilvf~v--P--------------hQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI  158 (372)
T KOG2711|consen   95 AVPDLVEAAKDADILVFVV--P--------------HQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQII  158 (372)
T ss_pred             ecchHHHHhccCCEEEEeC--C--------------hhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHH
Confidence            3579999999999999975  2              122456777777663 666666654333310     12556666


Q ss_pred             HHhCCCCCC
Q 025075          152 KKAGTYDPK  160 (258)
Q Consensus       152 ~~~~~~~~~  160 (258)
                      .+..+.|-.
T Consensus       159 ~~~lgI~~~  167 (372)
T KOG2711|consen  159 HRALGIPCS  167 (372)
T ss_pred             HHHhCCCce
Confidence            555556544

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.87  E-value=0.011  Score=50.04  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||.|+|+ |.+|+.++..|+..|. ++|.++|.+.
T Consensus        22 ~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH   55 (202)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence            48999998 9999999999999885 6999999873

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=96.87  E-value=0.027  Score=48.10  Aligned_cols=114  Identities=12%  Similarity=0.199  Sum_probs=61.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Ch--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      +++.|+||+|.+|++++..|+..|.  ++++.+... ..  ....++.+..  ..+..+.. -.|   +.+++       
T Consensus         7 ~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (247)
T PRK12935          7 KVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNHF   82 (247)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            5799999999999999999998886  676654432 21  1112332211  12221111 112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCCC------chhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~------~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      ...|+||+++|.......      .-.+.+..|+.-...+.+.+..+   ...+.+++++.
T Consensus        83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS  143 (247)
T PRK12935         83 GKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS  143 (247)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            347999999986432211      11234556666555555554432   23456666654

>PRK09186 flagellin modification protein A; Provisional

Probab=96.86  E-value=0.0099  Score=51.07  Aligned_cols=36  Identities=25%  Similarity=0.266  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|.+++..|...|.  +|++.+++.+
T Consensus         4 ~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~~   39 (256)
T PRK09186          4 GKTILITGAGGLIGSALVKAILEAGG--IVIAADIDKE   39 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecChH
Confidence            35899999999999999999999887  8999988764

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.022  Score=48.99  Aligned_cols=37  Identities=19%  Similarity=0.222  Sum_probs=32.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.++|.|+||+|.+|.+++..|...|.  +|++.+++.+
T Consensus         8 ~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~~   44 (258)
T PRK06949          8 EGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRVE   44 (258)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            346899999999999999999998887  8999998764

>TIGR00518 alaDH alanine dehydrogenase

Probab=96.85  E-value=0.0059  Score=56.51  Aligned_cols=77  Identities=18%  Similarity=0.221  Sum_probs=51.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE-EeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++.||+|+|+ |.+|...+..+...|.  +|..+|++.++...  +... +...+.. .....++.+.++++|+||.++
T Consensus       165 l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~~~--l~~~-~g~~v~~~~~~~~~l~~~l~~aDvVI~a~  238 (370)
T TIGR00518       165 VEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRLRQ--LDAE-FGGRIHTRYSNAYEIEDAVKRADLLIGAV  238 (370)
T ss_pred             CCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHH--HHHh-cCceeEeccCCHHHHHHHHccCCEEEEcc
Confidence            34568999998 9999999999988886  79999987643221  1111 1111111 111234667889999999998


Q ss_pred             CCCC
Q 025075           97 GVPR  100 (258)
Q Consensus        97 g~~~  100 (258)
                      +.+.
T Consensus       239 ~~~g  242 (370)
T TIGR00518       239 LIPG  242 (370)
T ss_pred             ccCC
Confidence            6543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK08226 short chain dehydrogenase; Provisional

Probab=96.85  E-value=0.017  Score=49.98  Aligned_cols=36  Identities=31%  Similarity=0.381  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|+.++..|...|.  +|++++++..
T Consensus         6 ~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~~   41 (263)
T PRK08226          6 GKTALITGALQGIGEGIARVFARHGA--NLILLDISPE   41 (263)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHH
Confidence            35899999999999999999999887  8999998753

>PRK09242 tropinone reductase; Provisional

Probab=96.84  E-value=0.054  Score=46.66  Aligned_cols=35  Identities=20%  Similarity=0.070  Sum_probs=31.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|..++..|...|.  +|++.+++.+
T Consensus        10 k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~   44 (257)
T PRK09242         10 QTALITGASKGIGLAIAREFLGLGA--DVLIVARDAD   44 (257)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            4799999999999999999999887  8999998764

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.84  E-value=0.018  Score=54.01  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             HhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            9 QAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         9 ~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      .++.|..+. ....+|+|+|+ |.+|..++..+...|.  +|+.+|+++.+.. +..  . .+  ..      .++++++
T Consensus       190 ~~i~r~t~~~l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~--~-G~--~~------~~~~e~v  255 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAM--E-GY--EV------MTMEEAV  255 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHh--c-CC--EE------ccHHHHH
Confidence            445555432 23458999998 9999999999988886  7888999875322 211  1 11  11      1235788


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHH-hhhhCCCcEEEEecCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG-IAKCCPNATVNLISNP  139 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~-i~~~~p~a~viv~tNP  139 (258)
                      +++|+||.+.|.+               .++.   .. +....|.+++++++.+
T Consensus       256 ~~aDVVI~atG~~---------------~~i~---~~~l~~mk~GgilvnvG~~  291 (413)
T cd00401         256 KEGDIFVTTTGNK---------------DIIT---GEHFEQMKDGAIVCNIGHF  291 (413)
T ss_pred             cCCCEEEECCCCH---------------HHHH---HHHHhcCCCCcEEEEeCCC
Confidence            9999999987522               1111   22 3334578899998875

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.84  E-value=0.016  Score=54.58  Aligned_cols=101  Identities=19%  Similarity=0.145  Sum_probs=63.3

Q ss_pred             HhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075            9 QAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus         9 ~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      .++++..+. ....+|+|+|. |.+|..++..|...|.  +|+.+|+++.+.... ..+ .+  .+      .+++++++
T Consensus       200 ~ai~rat~~~l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A-~~~-G~--~v------~~l~eal~  266 (425)
T PRK05476        200 DGIKRATNVLIAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQA-AMD-GF--RV------MTMEEAAE  266 (425)
T ss_pred             HHHHHhccCCCCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHH-Hhc-CC--Ee------cCHHHHHh
Confidence            344444332 24458999998 9999999999998887  899999987532211 111 11  11      13568899


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ++|+||.+.|.+               .++.  .+.+....+.+++++++-+
T Consensus       267 ~aDVVI~aTG~~---------------~vI~--~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        267 LGDIFVTATGNK---------------DVIT--AEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             CCCEEEECCCCH---------------HHHH--HHHHhcCCCCCEEEEcCCC
Confidence            999998876421               1111  1223333477899888744

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=96.84  E-value=0.04  Score=46.74  Aligned_cols=72  Identities=21%  Similarity=0.301  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc------hHhhhCCCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d------~~~a~~~aDiVI   93 (258)
                      |+|.|+||+|.+|..++..|+.++..-.+.+.+++....    ..+.    .+..+. .-+|      +.+.+...|++|
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~~~----~~~~~~~Dls~~~~~~~~~~~~~~id~li   72 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQHD----NVQWHALDVTDEAEIKQLSEQFTQLDWLI   72 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cccC----ceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence            589999999999999999998875322566666544211    1111    111111 0111      223356899999


Q ss_pred             EcCCCCC
Q 025075           94 IPAGVPR  100 (258)
Q Consensus        94 i~ag~~~  100 (258)
                      +++|...
T Consensus        73 ~~aG~~~   79 (235)
T PRK09009         73 NCVGMLH   79 (235)
T ss_pred             ECCcccc
Confidence            9999753

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=96.83  E-value=0.038  Score=47.96  Aligned_cols=118  Identities=15%  Similarity=0.231  Sum_probs=64.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhh-------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENA-------   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------   85 (258)
                      +.+++.|+|++|.+|.+++..|+..|.  ++++.+++.+..  ...++....  ..+..+. .-+|   ++++       
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE   84 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            345799999999999999999999887  799998876421  122232211  1121111 1112   1222       


Q ss_pred             hCCCCEEEEcCCCCCC-C-CCchh----hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           86 LTGMDLVIIPAGVPRK-P-GMTRD----DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~-~-g~~r~----d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +...|++|.++|.... + .....    ..+..|+.    +.+.+.+.+.+ ...+.|++++....
T Consensus        85 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~~  149 (265)
T PRK07097         85 VGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMMS  149 (265)
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCccc
Confidence            2347999999986321 1 11111    22334443    33344444543 34567777766443

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.83  E-value=0.008  Score=52.75  Aligned_cols=68  Identities=25%  Similarity=0.241  Sum_probs=44.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||||+|+|++|.+|+.++..+...+-+.-+.++|.+.......    ...  .+.   ..+|+++.++++|+||.+.
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~----~~~--~i~---~~~dl~~ll~~~DvVid~t   68 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ----GAL--GVA---ITDDLEAVLADADVLIDFT   68 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc----CCC--Ccc---ccCCHHHhccCCCEEEECC
Confidence            4799999977999999998777644343455688776422111    111  111   2357777788999999654

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=96.83  E-value=0.0057  Score=55.58  Aligned_cols=71  Identities=15%  Similarity=0.149  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+++|||+ |..|...+..+.....+++|.+||++.++..  ..++.+  ....+..   ..+.++++++||+|+.+.
T Consensus       128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~--~g~~v~~---~~~~~eav~~aDiVitaT  200 (325)
T TIGR02371       128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASD--YEVPVRA---ATDPREAVEGCDILVTTT  200 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHh--hCCcEEE---eCCHHHHhccCCEEEEec
Confidence            468999997 9999987766655444689999999876432  223332  1112222   246789999999999875

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.83  E-value=0.0057  Score=54.45  Aligned_cols=88  Identities=11%  Similarity=0.101  Sum_probs=55.2

Q ss_pred             HHHHhHHhhc--CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCc
Q 025075            6 CLRQAKCRAK--GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQ   81 (258)
Q Consensus         6 ~~~~~~~~~~--~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d   81 (258)
                      =|.+..++.-  ++.+..++.|+|+ |.++.++++.|...|. .+|.+++++.++++.+  ++...   ..+..+....+
T Consensus       109 G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~~~~~~~  183 (282)
T TIGR01809       109 GIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITRLEGDSG  183 (282)
T ss_pred             HHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---Ccceeccchhh
Confidence            3666665532  1234568999998 9999999999998885 5899999876544332  22111   11111111123


Q ss_pred             hHhhhCCCCEEEEcCCC
Q 025075           82 LENALTGMDLVIIPAGV   98 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~   98 (258)
                      +.+.+.++|+||.|...
T Consensus       184 ~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       184 GLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             hhhcccCCCEEEECCCC
Confidence            33556899999998643

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.82  E-value=0.0059  Score=58.19  Aligned_cols=97  Identities=12%  Similarity=0.155  Sum_probs=58.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC-CCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      +|+|||. |.+|.+++..|+..|+  +|.+||+++++...  +... .....+.......++.+.++.+|+||++.-   
T Consensus         1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~~~~--l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~---   72 (467)
T TIGR00873         1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEKTDE--FLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK---   72 (467)
T ss_pred             CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHHHHH--HHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence            4899997 9999999999999998  89999998653322  2221 000011111111122234467999999862   


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                       ++.           .+.++.+.+..+ .|+.++|-.+|
T Consensus        73 -~~~-----------~v~~Vi~~l~~~L~~g~iIID~gn   99 (467)
T TIGR00873        73 -AGA-----------PVDAVINQLLPLLEKGDIIIDGGN   99 (467)
T ss_pred             -CcH-----------HHHHHHHHHHhhCCCCCEEEECCC
Confidence             222           123344455444 36677887876

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.82  E-value=0.0012  Score=61.07  Aligned_cols=74  Identities=22%  Similarity=0.232  Sum_probs=45.6

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-CCCCCeEEEEeC--CCchHhhhCCCCEEEEcCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLG--QPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~--~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |.|+|+ |.+|+.++..|.+.+...+|++.|++..+...+ ... ............  ..++.+.++++|+||.++|.
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERL-AEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHH-HT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHH-HhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            789999 999999999999887656899999987543322 111 111111111111  12366789999999999864

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.04  Score=47.35  Aligned_cols=155  Identities=15%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++.++++...  ...++.+...  .+..+. .-.|   +++.+       .
T Consensus         7 k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T PRK07478          7 KVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEGG--EAVALAGDVRDEAYAKALVALAVERFG   82 (254)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  899999876421  1223332211  121111 1111   22222       3


Q ss_pred             CCCEEEEcCCCCC--CC--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 ~aDiVIi~ag~~~--~~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ..|++|.++|...  .+  ..+.   ...+..|+.    ..+.+.+.+.+.. .+.+++++.....          .. +
T Consensus        83 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS~~~~----------~~-~  150 (254)
T PRK07478         83 GLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTSTFVGH----------TA-G  150 (254)
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEechHhh----------cc-C
Confidence            6899999998632  12  1122   233555654    4455555555443 3456655542220          00 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .+..-.++.+..-...+-..++++++  +..|++.++
T Consensus       151 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  185 (254)
T PRK07478        151 FPGMAAYAASKAGLIGLTQVLAAEYG--AQGIRVNAL  185 (254)
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHHHh--hcCEEEEEE
Confidence            33333444443333456666777764  345654433

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=96.81  E-value=0.083  Score=45.47  Aligned_cols=36  Identities=25%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|.+++..|...|.  ++++.|++..
T Consensus        11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~   46 (255)
T PRK06113         11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINAD   46 (255)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHH
Confidence            46899999999999999999999887  8999988654

>TIGR02415 23BDH acetoin reductases

Probab=96.81  E-value=0.022  Score=48.86  Aligned_cols=112  Identities=17%  Similarity=0.284  Sum_probs=63.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENA-------LTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~~   88 (258)
                      ++.|+|++|.+|..++..|.+.|.  +|++++++....  ...++....  ..+..+.. -.|   +.++       +..
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~   77 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG   77 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            689999999999999999999887  899999875321  112232211  11221111 112   2222       235


Q ss_pred             CCEEEEcCCCCCC-C--CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075           89 MDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        89 aDiVIi~ag~~~~-~--g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .|+||.++|.... +  +.+..   ..+..|+.    +++.+.+.+++.+..+.++++|
T Consensus        78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s  136 (254)
T TIGR02415        78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA  136 (254)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            7999999986321 1  12222   23444543    3445556666555556666554

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.81  E-value=0.0074  Score=51.12  Aligned_cols=36  Identities=17%  Similarity=0.059  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |+++.|+|++|.+|+.++..|+..|.  +|+++|+++.
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~   36 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGW--QVTATVRGPQ   36 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCCc
Confidence            35799999999999999999999887  8999999865

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.80  E-value=0.0088  Score=54.69  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..||+|||+ |.+|++++..|+..|+ ++|.|+|.|.
T Consensus        24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (338)
T PRK12475         24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDY   58 (338)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCc
Confidence            358999998 9999999999999986 6999999875

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.80  E-value=0.0097  Score=53.07  Aligned_cols=88  Identities=19%  Similarity=0.248  Sum_probs=54.9

Q ss_pred             HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCC-eEEEEeCCCch
Q 025075            6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGA-VVRGFLGQPQL   82 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~-~v~~~~~~~d~   82 (258)
                      =|.+..++...+.+.+++.|+|| |..+.++++.|...|. .+|.++|++.++++.+  ++.. .... .+... ...++
T Consensus       113 Gf~~~L~~~~~~~~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~-~~~~~~~~~~-~~~~~  188 (283)
T PRK14027        113 GFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINN-AVGREAVVGV-DARGI  188 (283)
T ss_pred             HHHHHHHhcCcCcCCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhh-ccCcceEEec-CHhHH
Confidence            36677765332344568999998 9999999999998875 5899999987544332  2221 1111 11111 11122


Q ss_pred             HhhhCCCCEEEEcCC
Q 025075           83 ENALTGMDLVIIPAG   97 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag   97 (258)
                      .+.+.++|+||.+..
T Consensus       189 ~~~~~~~divINaTp  203 (283)
T PRK14027        189 EDVIAAADGVVNATP  203 (283)
T ss_pred             HHHHhhcCEEEEcCC
Confidence            345678999999853

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=96.80  E-value=0.0024  Score=54.81  Aligned_cols=106  Identities=17%  Similarity=0.230  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh------h---HHHHHhcCC-CCC------eEEEEeCCCchH
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------G---VTADISHMD-TGA------VVRGFLGQPQLE   83 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~------g---~~~dl~~~~-~~~------~v~~~~~~~d~~   83 (258)
                      .-||+|+|. |.+|++.|..++..|+  +|.|||+-+.+      .   +..+|+... ...      .+..+++++++.
T Consensus         3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~   79 (313)
T KOG2305|consen    3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN   79 (313)
T ss_pred             ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence            358999995 9999999999999999  99999997631      1   112233221 111      122245678899


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcH
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV  144 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~  144 (258)
                      |..++|=.+=-|+              .+.+...+.+.+++.+.. |+.++  .|..+..|-
T Consensus        80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~tIl--aSSTSt~mp  125 (313)
T KOG2305|consen   80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTTIL--ASSTSTFMP  125 (313)
T ss_pred             HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCceEE--eccccccCh
Confidence            9999885543332              223455677888888875 55443  555555443

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.79  E-value=0.03  Score=49.73  Aligned_cols=104  Identities=20%  Similarity=0.237  Sum_probs=71.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC----hh----HHHHHhcCCCCCeEEEEeCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT----PG----VTADISHMDTGAVVRGFLGQ   79 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~----~g----~~~dl~~~~~~~~v~~~~~~   79 (258)
                      +.+..||.|.|| |.-|..++.+|...    |+-     +.++++|.+--    +.    ....+.+.. . .    ...
T Consensus        22 ~l~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~-~-~----~~~   94 (279)
T cd05312          22 PLSDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKD-E-E----KEG   94 (279)
T ss_pred             ChhhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhc-C-c----ccC
Confidence            444569999998 99999999877553    652     58999998741    11    111222211 1 1    113


Q ss_pred             CchHhhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           80 PQLENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        80 ~d~~~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .++.++++  ++|++|=+.+.+   |-           +-+++.+.|.+++++.+|+-.|||..
T Consensus        95 ~~L~e~i~~v~ptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~  144 (279)
T cd05312          95 KSLLEVVKAVKPTVLIGLSGVG---GA-----------FTEEVVRAMAKSNERPIIFALSNPTS  144 (279)
T ss_pred             CCHHHHHHhcCCCEEEEeCCCC---CC-----------CCHHHHHHHHhcCCCCEEEECCCcCC
Confidence            57899999  999987765432   31           12678899999999999999999985

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.021  Score=49.73  Aligned_cols=115  Identities=13%  Similarity=0.111  Sum_probs=66.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEE----eCCCchHhhh------CC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENAL------TG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~----~~~~d~~~a~------~~   88 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.... ...+..+    ....++++.+      ..
T Consensus         9 k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          9 KLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            3689999999999999999999987  899999876421  122232211 1111111    1111222333      25


Q ss_pred             CCEEEEcCCCCCCC---CCchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           89 MDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        89 aDiVIi~ag~~~~~---g~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      .|++|.++|.+...   ..+..   ..+..|    +...+.+.+.+++.. .+.||++|..
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~  145 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV  145 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence            89999999865321   11222   223334    445677777776543 4667666653

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.75  E-value=0.02  Score=54.49  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ...+|+|+|. |.+|..++..+...|.  +|..+|+++.+.... ..+ .+  .+      .+++++++.+|+||.+.|.
T Consensus       253 aGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A-~~~-G~--~~------~~leell~~ADIVI~atGt  319 (476)
T PTZ00075        253 AGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQA-AME-GY--QV------VTLEDVVETADIFVTATGN  319 (476)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHH-Hhc-Cc--ee------ccHHHHHhcCCEEEECCCc
Confidence            3458999998 9999999999988887  899998876432111 111 11  11      2457889999999998652


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +   +            ++.  .+.+....|.+++++++-.
T Consensus       320 ~---~------------iI~--~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        320 K---D------------IIT--LEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             c---c------------ccC--HHHHhccCCCcEEEEcCCC
Confidence            1   1            111  1234444588999998765

>PRK06523 short chain dehydrogenase; Provisional

Probab=96.75  E-value=0.0034  Score=54.21  Aligned_cols=36  Identities=14%  Similarity=0.123  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|+.++..|+..|.  +|++.+++..
T Consensus         9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~~   44 (260)
T PRK06523          9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSRP   44 (260)
T ss_pred             CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCChh
Confidence            35899999999999999999999887  8999998753

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=96.75  E-value=0.0081  Score=53.65  Aligned_cols=68  Identities=22%  Similarity=0.240  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...+|+|+|+ |.+|..++..|...|.  +|.++|++..+...  ......    ..+. ..++.+.++++|+||.+.
T Consensus       150 ~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~~~~--~~~~g~----~~~~-~~~l~~~l~~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSADLAR--ITEMGL----IPFP-LNKLEEKVAEIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHCCC----eeec-HHHHHHHhccCCEEEECC
Confidence            3458999998 9999999999998886  89999987642111  111111    1111 135667889999999986

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.75  E-value=0.012  Score=52.66  Aligned_cols=90  Identities=18%  Similarity=0.159  Sum_probs=54.3

Q ss_pred             HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcC---CCCCeEEEEeCC--
Q 025075            6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---DTGAVVRGFLGQ--   79 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~---~~~~~v~~~~~~--   79 (258)
                      =|.+..++...+.+..++.|+|| |..+.++++.|...|. .+|.+++++.+ ...+.+|.+.   .....+......  
T Consensus       110 Gf~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~  187 (288)
T PRK12749        110 GHIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQ  187 (288)
T ss_pred             HHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhh
Confidence            36677765433334458999998 9999999998888775 58999999853 1122222211   111122221110  


Q ss_pred             CchHhhhCCCCEEEEcCC
Q 025075           80 PQLENALTGMDLVIIPAG   97 (258)
Q Consensus        80 ~d~~~a~~~aDiVIi~ag   97 (258)
                      ..+.+++.++|+||.+..
T Consensus       188 ~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        188 QAFAEALASADILTNGTK  205 (288)
T ss_pred             hhhhhhcccCCEEEECCC
Confidence            012346778999999853

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.73  E-value=0.047  Score=49.77  Aligned_cols=127  Identities=20%  Similarity=0.238  Sum_probs=73.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCC-CCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-aDiVIi~ag~   98 (258)
                      .+|+|+|+ |.+|......+...|.  +|+.+|+++++ ..+.+|.   ....+.. . ..|..+++++ +|++|.+++ 
T Consensus       168 ~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lG---Ad~~i~~-~-~~~~~~~~~~~~d~ii~tv~-  238 (339)
T COG1064         168 KWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLG---ADHVINS-S-DSDALEAVKEIADAIIDTVG-  238 (339)
T ss_pred             CEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhC---CcEEEEc-C-CchhhHHhHhhCcEEEECCC-
Confidence            49999998 9888877777766774  99999998763 2333332   1112221 1 1233344444 999999985 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC-CCcHHHHHHHHHHhCCCCCCcEEEE---eeccHHHHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVVRAN  174 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv-d~~~~i~t~~~~~~~~~~~~kviG~---t~lds~R~~  174 (258)
                      +                  ..+-..++-..+++.++.+.+|- ..+..+-  .+...  +...+|.|.   +..|+..+.
T Consensus       239 ~------------------~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~--~~~li--~~~~~i~GS~~g~~~d~~e~l  296 (339)
T COG1064         239 P------------------ATLEPSLKALRRGGTLVLVGLPGGGPIPLLP--AFLLI--LKEISIVGSLVGTRADLEEAL  296 (339)
T ss_pred             h------------------hhHHHHHHHHhcCCEEEEECCCCCcccCCCC--HHHhh--hcCeEEEEEecCCHHHHHHHH
Confidence            2                  11222333344889999999994 4322110  11111  345678888   445554444


Q ss_pred             HHHH
Q 025075          175 TFVA  178 (258)
Q Consensus       175 ~~la  178 (258)
                      .+.+
T Consensus       297 ~f~~  300 (339)
T COG1064         297 DFAA  300 (339)
T ss_pred             HHHH
Confidence            4443

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.064  Score=46.40  Aligned_cols=115  Identities=16%  Similarity=0.174  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCch---Hh-------hhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL---EN-------ALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d~---~~-------a~~   87 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.+++.++  ....++........+..+. .-.|.   .+       .+.
T Consensus         9 k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          9 RVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999887  89999997642  1122232211111222111 11121   11       124


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.++|......   .+..   ..+..|    +...+.+.+.+++.. .+.|+++|.
T Consensus        87 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  146 (265)
T PRK07062         87 GVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS  146 (265)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence            5799999998643211   1111   122233    334566666665543 456666654

>PRK12744 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.077  Score=45.74  Aligned_cols=33  Identities=18%  Similarity=0.045  Sum_probs=27.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +++.|+||+|.+|.+++..|...|.  ++++++.+
T Consensus         9 k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~   41 (257)
T PRK12744          9 KVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN   41 (257)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence            5899999999999999999998886  66666543

>PRK07677 short chain dehydrogenase; Provisional

Probab=96.73  E-value=0.045  Score=47.04  Aligned_cols=113  Identities=12%  Similarity=0.101  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhh-------hC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENA-------LT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~~   87 (258)
                      +++.|+||+|.+|.+++..|...|.  .|++.|++....  ...++....  ..+..+. .-+|   +++.       +.
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999887  899999876421  122232211  1222111 1112   2221       24


Q ss_pred             CCCEEEEcCCCCCC-C--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075           88 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..|++|.++|.... +  ..+.   ...+..|+.    +.+.+.+.+.+....+.++++|
T Consensus        78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is  137 (252)
T PRK07677         78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV  137 (252)
T ss_pred             CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence            67999999875321 1  1222   223455544    4444444444434456777766

>PRK08324 short chain dehydrogenase; Validated

Probab=96.73  E-value=0.016  Score=57.88  Aligned_cols=115  Identities=20%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCC--CchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQ--PQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~a   89 (258)
                      ++|.|+||+|.+|..++..|...|.  +|+++|++.....  ..++... ..........+  .++.+++       .+.
T Consensus       423 k~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~-~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i  499 (681)
T PRK08324        423 KVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP-DRALGVACDVTDEAAVQAAFEEAALAFGGV  499 (681)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc-CcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            5899999999999999999998887  8999999864211  1122221 01011111111  1122223       368


Q ss_pred             CEEEEcCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |+||.++|......   .+..   ..+..|+.    +++...+.+++....+.+++++.
T Consensus       500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS  558 (681)
T PRK08324        500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIAS  558 (681)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence            99999998643221   1111   12344444    34444555555443466666654

>PRK07340 ornithine cyclodeaminase; Validated

Probab=96.73  E-value=0.0072  Score=54.39  Aligned_cols=71  Identities=14%  Similarity=0.156  Sum_probs=49.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ...+|+|||+ |..|...+..+.. .+ +.+|.+||++.++.+  +.++...  ...+.    ..+++++++++|+||.+
T Consensus       124 ~~~~v~IiGa-G~qa~~~~~al~~~~~-~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVita  195 (304)
T PRK07340        124 PPGDLLLIGT-GVQARAHLEAFAAGLP-VRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTA  195 (304)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHhCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEc
Confidence            3468999997 9999999988765 44 469999999875333  2233321  11222    24677899999999987


Q ss_pred             CC
Q 025075           96 AG   97 (258)
Q Consensus        96 ag   97 (258)
                      ..
T Consensus       196 T~  197 (304)
T PRK07340        196 TT  197 (304)
T ss_pred             cC
Confidence            54

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.72  E-value=0.02  Score=49.39  Aligned_cols=113  Identities=12%  Similarity=0.124  Sum_probs=62.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhh-------CCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENAL-------TGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aDiV   92 (258)
                      +++.|+||+|.+|..++..|...|.  +|++.+.+... ...++.+.... .+. ++....++.+++       ...|++
T Consensus         8 k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~-~~~~l~~~~~~-~~~~Dl~~~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          8 KVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAEN-EAKELREKGVF-TIKCDVGNRDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcHH-HHHHHHhCCCe-EEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5799999999999999999999886  78777654321 11122221110 111 111111222222       367999


Q ss_pred             EEcCCCCCCC---CCchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~---g~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |.++|.....   ..+..   ..+..|+.-    .+.+.+.+.+.. .+.++++|.
T Consensus        84 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS  138 (255)
T PRK06463         84 VNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS  138 (255)
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            9999874321   11221   234445443    566666665433 456666654

>PRK08628 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.045  Score=47.14  Aligned_cols=114  Identities=14%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeC----CCchHhhhC-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLG----QPQLENALT-------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~----~~d~~~a~~-------   87 (258)
                      .+++.|+||+|.+|..++..|+++|.  ++++.++++.... ..++.....  .+..+..    ..++...++       
T Consensus         7 ~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          7 DKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQP--RAEFVQVDLTDDAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            35899999999999999999999887  7888888764222 122322111  1111111    112223332       


Q ss_pred             CCCEEEEcCCCCCCCCC--c---hhhHHHHhHHHHHHHHHHhhhhC--CCcEEEEec
Q 025075           88 GMDLVIIPAGVPRKPGM--T---RDDLFNINAGIVRTLCEGIAKCC--PNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~--~---r~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~t  137 (258)
                      ..|+||.++|.......  .   -.+.+..|+.....+.+.+.++-  ..+.+++++
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~s  139 (258)
T PRK08628         83 RIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNIS  139 (258)
T ss_pred             CCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEEC
Confidence            57999999986432221  1   12235556654444444443321  234555544

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.71  E-value=0.047  Score=46.65  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=28.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L-~D~~~   56 (258)
                      .+++.|+||+|.+|..++..|...|.  ++++ .+++.
T Consensus         4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~   39 (250)
T PRK08063          4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR   39 (250)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence            35899999999999999999999886  6665 45544

>PRK12747 short chain dehydrogenase; Provisional

Probab=96.71  E-value=0.1  Score=44.81  Aligned_cols=32  Identities=19%  Similarity=0.228  Sum_probs=28.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.+.
T Consensus         5 k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~   36 (252)
T PRK12747          5 KVALVTGASRGIGRAIAKRLANDGA--LVAIHYG   36 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence            5799999999999999999999887  7888754

>PRK06483 dihydromonapterin reductase; Provisional

Probab=96.70  E-value=0.03  Score=47.58  Aligned_cols=35  Identities=20%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|+++.
T Consensus         3 k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   37 (236)
T PRK06483          3 APILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTHY   37 (236)
T ss_pred             ceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCch
Confidence            4799999999999999999999887  8999998764

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.70  E-value=0.0077  Score=53.61  Aligned_cols=60  Identities=18%  Similarity=0.278  Sum_probs=44.3

Q ss_pred             EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           25 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        25 IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||. |.+|.+++..|...|+  +|.+||+++++..  ++....    ..   .+.++.++++++|+||++.
T Consensus         1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~~---~~~s~~~~~~~advVil~v   60 (288)
T TIGR01692         1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDAVE--EAVAAG----AQ---AAASPAEAAEGADRVITML   60 (288)
T ss_pred             CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHHHH--HHHHcC----Ce---ecCCHHHHHhcCCEEEEeC
Confidence            5897 9999999999999887  8999999765322  222211    11   1245678899999999996

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=96.70  E-value=0.16  Score=43.87  Aligned_cols=34  Identities=18%  Similarity=0.273  Sum_probs=28.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      +.+++.|+||++.+|.+++..|+..|.  .|++.+.
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~   40 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN   40 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence            345899999999999999999999887  7887754

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=96.69  E-value=0.022  Score=45.16  Aligned_cols=33  Identities=24%  Similarity=0.508  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ||.|+|+ |.+|+.++..|...|. +++.++|.+.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT   33 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence            6899998 9999999999999986 6899999873

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=96.68  E-value=0.041  Score=46.73  Aligned_cols=34  Identities=18%  Similarity=0.110  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +++.|+|++|.+|++++..|...|.  .|++.|++.
T Consensus         3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~   36 (245)
T PRK12824          3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG   36 (245)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence            4789999999999999999998886  899999875

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.68  E-value=0.0043  Score=56.67  Aligned_cols=72  Identities=25%  Similarity=0.308  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +.+||+|+||+|.+|..+...|..+. ...+|.++..+...|+.+.+...    .+....  .+ +.++.++|+||++.+
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~--~~-~~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD--AA-EFDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe--Cc-hhhccCCCEEEECCC
Confidence            45799999999999999999998742 23488888665444444333221    222111  11 234589999999874

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.68  E-value=0.032  Score=47.23  Aligned_cols=68  Identities=24%  Similarity=0.200  Sum_probs=45.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc----hHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d----~~~a~~~aDiVIi~   95 (258)
                      +++.|+|++|.+|.+++..|++.|.  +|++.|++....    ..     ..+..+.. -.+    ..+.+...|++|.+
T Consensus         6 k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv~~   74 (235)
T PRK06550          6 KTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILCNT   74 (235)
T ss_pred             CEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEEEC
Confidence            5799999999999999999999887  899999865311    00     01111111 011    12234578999999


Q ss_pred             CCCC
Q 025075           96 AGVP   99 (258)
Q Consensus        96 ag~~   99 (258)
                      +|..
T Consensus        75 ag~~   78 (235)
T PRK06550         75 AGIL   78 (235)
T ss_pred             CCCC
Confidence            9864

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=96.67  E-value=0.19  Score=43.37  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEe-CCCch---Hhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQL---ENA------   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~-~~~d~---~~a------   85 (258)
                      +.+++.|+||+|.+|..++..|...|.  .+++..++..   .....++....  ..+..+. .-+|.   .+.      
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~   81 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAVK   81 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHHH
Confidence            345899999999999999999999886  6777766432   11122232211  1111111 11122   112      


Q ss_pred             -hCCCCEEEEcCCCCCCC---CCchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           86 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        86 -~~~aDiVIi~ag~~~~~---g~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +...|++|..+|.....   ..+..   ..+..|+.    ..+.+.+.+.+....+.++++|.
T Consensus        82 ~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS  145 (261)
T PRK08936         82 EFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS  145 (261)
T ss_pred             HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             23579999999864321   11122   23455543    34556666666555666766654

>PRK07035 short chain dehydrogenase; Provisional

Probab=96.66  E-value=0.049  Score=46.72  Aligned_cols=35  Identities=20%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|.+++..|...|.  +|++.|++..
T Consensus         9 k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~~   43 (252)
T PRK07035          9 KIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKLD   43 (252)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4799999999999999999999886  8999998754

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=96.65  E-value=0.012  Score=52.21  Aligned_cols=157  Identities=24%  Similarity=0.281  Sum_probs=89.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC--CCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVIi~ag~   98 (258)
                      |||.|+|++|++|+.+...|. .+.  +++-.|...     +|+.+..            .+.+.++.  -|+||.+|..
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy   60 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY   60 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence            579999999999999998887 333  777776543     4444322            23455554  5999999875


Q ss_pred             CC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec-CCC--CCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHH
Q 025075           99 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (258)
Q Consensus        99 ~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NPv--d~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~  173 (258)
                      ..  +...++..-+.-|+.-...+++...+++-  ++|-+| .-|  ..-    ..-++..---+|-.+.|-+.+-...+
T Consensus        61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga--~lVhiSTDyVFDG~~----~~~Y~E~D~~~P~nvYG~sKl~GE~~  134 (281)
T COG1091          61 TAVDKAESEPELAFAVNATGAENLARAAAEVGA--RLVHISTDYVFDGEK----GGPYKETDTPNPLNVYGRSKLAGEEA  134 (281)
T ss_pred             cccccccCCHHHHHHhHHHHHHHHHHHHHHhCC--eEEEeecceEecCCC----CCCCCCCCCCCChhhhhHHHHHHHHH
Confidence            32  22334566678899999999999988753  333333 222  000    00001111134455666654432221


Q ss_pred             HHHHHHHhCCCCCce--e-EEEEecCCCCceeeccCCCC
Q 025075          174 NTFVAEVLGLDPRDV--D-VPVVGGHAGVTILPLLSQVK  209 (258)
Q Consensus       174 ~~~la~~l~v~~~~v--~-~~v~G~h~g~~~vp~~S~~~  209 (258)
                          .+..+  |+.+  + .+|+|+++++-..+.|..+.
T Consensus       135 ----v~~~~--~~~~I~Rtswv~g~~g~nFv~tml~la~  167 (281)
T COG1091         135 ----VRAAG--PRHLILRTSWVYGEYGNNFVKTMLRLAK  167 (281)
T ss_pred             ----HHHhC--CCEEEEEeeeeecCCCCCHHHHHHHHhh
Confidence                22222  3333  4 68999986444445555444

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.65  E-value=0.01  Score=55.02  Aligned_cols=61  Identities=16%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++|+|||. |.||+.++..|..-|.  +|..||.....  .   ..     ...    ..++++.++.||+|++..
T Consensus       115 ~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~--~---~~-----~~~----~~~L~ell~~sDiI~lh~  175 (378)
T PRK15438        115 HDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD--R---GD-----EGD----FRSLDELVQEADILTFHT  175 (378)
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc--c---cc-----ccc----cCCHHHHHhhCCEEEEeC
Confidence            4469999998 9999999999988887  99999963211  0   00     000    135788899999999875

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.65  E-value=0.025  Score=50.54  Aligned_cols=89  Identities=11%  Similarity=0.237  Sum_probs=53.6

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ChhH--HHHHhcCCCCCeEEE--EeCC
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGV--TADISHMDTGAVVRG--FLGQ   79 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~---~~g~--~~dl~~~~~~~~v~~--~~~~   79 (258)
                      |.+..++.-...+.+++.|+|| |.+|.++++.|+..|. .+|.+++++.   ++.+  +.++........+..  +...
T Consensus       113 ~~~~l~~~~~~~~~k~vlI~GA-GGagrAia~~La~~G~-~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~  190 (289)
T PRK12548        113 FVRNLREHGVDVKGKKLTVIGA-GGAATAIQVQCALDGA-KEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDT  190 (289)
T ss_pred             HHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhh
Confidence            5666654332334458999998 9999999999998885 5799999986   2222  222322111111111  1111


Q ss_pred             CchHhhhCCCCEEEEcCC
Q 025075           80 PQLENALTGMDLVIIPAG   97 (258)
Q Consensus        80 ~d~~~a~~~aDiVIi~ag   97 (258)
                      .++.+.++.+|+||.+-.
T Consensus       191 ~~~~~~~~~~DilINaTp  208 (289)
T PRK12548        191 EKLKAEIASSDILVNATL  208 (289)
T ss_pred             hHHHhhhccCCEEEEeCC
Confidence            234456778999999753

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.64  E-value=0.021  Score=51.64  Aligned_cols=66  Identities=14%  Similarity=0.153  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCc--------------------hHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe
Q 025075           21 FKVAILGAAGG--------------------IGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL   77 (258)
Q Consensus        21 ~KI~IIGa~G~--------------------VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~   77 (258)
                      |||+|-|| |+                    =|+++|..|...|+  +|.+||+++..   .....+.+...    ..  
T Consensus         1 ~~~~~~g~-gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~--   71 (341)
T TIGR01724         1 MKVSVYGA-GNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV--   71 (341)
T ss_pred             CeeEEecC-cchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee--
Confidence            57888887 74                    37788888888888  99999987642   12223433221    11  


Q ss_pred             CCCchHhhhCCCCEEEEcC
Q 025075           78 GQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        78 ~~~d~~~a~~~aDiVIi~a   96 (258)
                       ..+..++.+++|+||++.
T Consensus        72 -AaS~aEAAa~ADVVIL~L   89 (341)
T TIGR01724        72 -VSDDKEAAKHGEIHVLFT   89 (341)
T ss_pred             -cCCHHHHHhCCCEEEEec
Confidence             235678999999999986

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.64  E-value=0.024  Score=43.59  Aligned_cols=73  Identities=26%  Similarity=0.312  Sum_probs=40.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCe-EEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~-v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ||+|+|++|.+|..++..|...+.+.-..+++.+...+......+...... ...+. ..+++  ..++|+||++.+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~   74 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP   74 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence            689999779999999888887543433334465543333222222211100 11111 12332  359999999863

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.64  E-value=0.19  Score=43.36  Aligned_cols=36  Identities=28%  Similarity=0.281  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G-~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+| .+|..++..|+..|.  +|++.|++..
T Consensus        17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~~   53 (262)
T PRK07831         17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHER   53 (262)
T ss_pred             CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCHH
Confidence            45899999877 699999999999887  7999998764

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.64  E-value=0.0074  Score=54.55  Aligned_cols=71  Identities=17%  Similarity=0.282  Sum_probs=44.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ...+++|||+ |..+...+..+.. .+ +.+|.+||++++  +..+.++.+ . ...+..   ..|.++++++||+|+.+
T Consensus       127 ~~~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~---~~~~~~av~~aDii~ta  199 (313)
T PF02423_consen  127 DARTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVA---VDSAEEAVRGADIIVTA  199 (313)
T ss_dssp             T--EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEE---ESSHHHHHTTSSEEEE-
T ss_pred             CCceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-ccccee---ccchhhhcccCCEEEEc
Confidence            3458999997 9999888776654 55 789999999875  333445555 2 224432   25788999999998876


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus       200 T  200 (313)
T PF02423_consen  200 T  200 (313)
T ss_dssp             -
T ss_pred             c
Confidence            4

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=96.64  E-value=0.027  Score=52.68  Aligned_cols=76  Identities=24%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             HhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075            9 QAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus         9 ~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      .++.|..+ .....+|+|+|. |.+|..++..+...|.  +|+.+|+++.+.... ..+. +  .+      .+++++++
T Consensus       183 ~~i~r~t~~~l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A-~~~G-~--~v------~~leeal~  249 (406)
T TIGR00936       183 DGILRATNLLIAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEA-AMDG-F--RV------MTMEEAAK  249 (406)
T ss_pred             HHHHHhcCCCCCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHH-HhcC-C--Ee------CCHHHHHh
Confidence            44555543 234459999998 9999999999988886  899999887532111 1111 1  11      13467899


Q ss_pred             CCCEEEEcCC
Q 025075           88 GMDLVIIPAG   97 (258)
Q Consensus        88 ~aDiVIi~ag   97 (258)
                      ++|+||.+.|
T Consensus       250 ~aDVVItaTG  259 (406)
T TIGR00936       250 IGDIFITATG  259 (406)
T ss_pred             cCCEEEECCC
Confidence            9999988754

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09072 short chain dehydrogenase; Provisional

Probab=96.63  E-value=0.033  Score=48.26  Aligned_cols=115  Identities=22%  Similarity=0.210  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCchH---hh------hC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQLE---NA------LT   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d~~---~a------~~   87 (258)
                      .++|.|+||+|.+|..++..|+.+|.  +|++.+++.....  ..++.+.   ..+..+. .-.|.+   +.      +.
T Consensus         5 ~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~   79 (263)
T PRK09072          5 DKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPYP---GRHRWVVADLTSEAGREAVLARAREMG   79 (263)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhcC---CceEEEEccCCCHHHHHHHHHHHHhcC
Confidence            35799999999999999999999987  8999998764211  1122111   1222111 111211   11      24


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP  139 (258)
                      ..|++|.++|......   .+.   .+.+..|+.-...+.+.+.++   .+.+.+++++..
T Consensus        80 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~  140 (263)
T PRK09072         80 GINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGST  140 (263)
T ss_pred             CCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecCh
Confidence            6799999998643211   111   234456655544444444332   233566666553

>PLN02494 adenosylhomocysteinase

Probab=96.61  E-value=0.028  Score=53.42  Aligned_cols=101  Identities=22%  Similarity=0.191  Sum_probs=66.9

Q ss_pred             HHhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhh
Q 025075            8 RQAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENA   85 (258)
Q Consensus         8 ~~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a   85 (258)
                      ..++.|..+. ....+|+|+|. |.+|..++..+...|.  +|+.+|+++.+ ..+.  .+. +  .+      .+++++
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~--~~G-~--~v------v~leEa  306 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQAL--MEG-Y--QV------LTLEDV  306 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHH--hcC-C--ee------ccHHHH
Confidence            5566676643 33468999998 9999999999988886  79999988743 2221  111 1  11      135678


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ++.+|+||.+.|..               .++  -.+.+....|++++++++-+
T Consensus       307 l~~ADVVI~tTGt~---------------~vI--~~e~L~~MK~GAiLiNvGr~  343 (477)
T PLN02494        307 VSEADIFVTTTGNK---------------DII--MVDHMRKMKNNAIVCNIGHF  343 (477)
T ss_pred             HhhCCEEEECCCCc---------------cch--HHHHHhcCCCCCEEEEcCCC
Confidence            99999999876421               111  02334444588999999875

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.041  Score=49.96  Aligned_cols=116  Identities=17%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEE--EEeCCCchHhhh-------CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVR--GFLGQPQLENAL-------TG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~--~~~~~~d~~~a~-------~~   88 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++++..  ...++..........  ++....++++.+       ..
T Consensus         7 ~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          7 GAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            35799999999999999999999987  899999876421  122232211111111  111111222222       46


Q ss_pred             CCEEEEcCCCCCCCC--C-ch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG--M-TR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g--~-~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|.++|......  + +.   .+.+..|+-    ..+.+.+.+.+.. .+.+|+++.
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~isS  143 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMIS  143 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            899999998643211  1 11   123444443    3344445555433 456666653

>PRK07578 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.019  Score=47.63  Aligned_cols=102  Identities=19%  Similarity=0.177  Sum_probs=57.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHh---hhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLEN---ALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~---a~~~aDiVIi~ag   97 (258)
                      |++.|+||+|.+|..++..|..+ .  +|++.+++.. ....|+.+.            .++++   .+...|++|.++|
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~------------~~~~~~~~~~~~id~lv~~ag   64 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDP------------ASIRALFEKVGKVDAVVSAAG   64 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCCh------------HHHHHHHHhcCCCCEEEECCC
Confidence            48999999999999999999877 3  8899987642 011122221            11222   2347899999998


Q ss_pred             CCCCC---CCchhh---HHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           98 VPRKP---GMTRDD---LFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~---g~~r~d---~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                      .....   ..+..+   .+..|+.....+.+...++ .+.+.++++|.
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss  112 (199)
T PRK07578         65 KVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSG  112 (199)
T ss_pred             CCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcc
Confidence            64311   122222   2344554333444433332 23455665553

>PRK09134 short chain dehydrogenase; Provisional

Probab=96.60  E-value=0.029  Score=48.44  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      .+++.|+||+|.+|.+++..|...|.  ++++.+..
T Consensus         9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~   42 (258)
T PRK09134          9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNR   42 (258)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            35799999999999999999998886  77777654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=96.60  E-value=0.0093  Score=57.73  Aligned_cols=96  Identities=22%  Similarity=0.305  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+........++       .+..   ..++++.+++||+|+++....
T Consensus       138 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~---~~~l~ell~~aDvV~l~lPlt  204 (525)
T TIGR01327       138 GKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQL-------GVEL---VDDLDELLARADFITVHTPLT  204 (525)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE---cCCHHHHHhhCCEEEEccCCC
Confidence            358999998 9999999999987777  89999975322222111       1111   135788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + +++. ++  |    .   +.+....|.+++|+++  .-+|
T Consensus       205 --~-~T~~-li--~----~---~~l~~mk~ga~lIN~aRG~~vd  235 (525)
T TIGR01327       205 --P-ETRG-LI--G----A---EELAKMKKGVIIVNCARGGIID  235 (525)
T ss_pred             --h-hhcc-Cc--C----H---HHHhcCCCCeEEEEcCCCceeC
Confidence              1 1111 11  1    1   3344445788888886  3455

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.60  E-value=0.0096  Score=55.29  Aligned_cols=62  Identities=18%  Similarity=0.171  Sum_probs=45.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..++|+|||. |.||+.++..|...|.  +|..||......     ..     ...    ..++++.++.||+|++...
T Consensus       115 ~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~~-----~~-----~~~----~~~l~ell~~aDiV~lh~P  176 (381)
T PRK00257        115 AERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQEA-----EG-----DGD----FVSLERILEECDVISLHTP  176 (381)
T ss_pred             CcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCccccc-----cc-----Ccc----ccCHHHHHhhCCEEEEeCc
Confidence            4468999998 9999999999988887  999999743210     00     011    1257788999999999753

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.60  E-value=0.08  Score=45.19  Aligned_cols=33  Identities=18%  Similarity=0.291  Sum_probs=27.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      ..+|.|+||+|++|++++..|+.+|.  ++++...
T Consensus         6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~   38 (252)
T PRK06077          6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK   38 (252)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence            35899999999999999999998887  6666543

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.58  E-value=0.025  Score=53.20  Aligned_cols=104  Identities=18%  Similarity=0.216  Sum_probs=64.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+...  +.... ...  .+. ..++.+++.++|+||.+.
T Consensus       177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~--la~~~-g~~--~i~-~~~l~~~l~~aDvVi~aT  248 (417)
T TIGR01035       177 SLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAED--LAKEL-GGE--AVK-FEDLEEYLAEADIVISST  248 (417)
T ss_pred             CccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHH--HHHHc-CCe--Eee-HHHHHHHHhhCCEEEECC
Confidence            344469999998 9999999999988774 489999987653321  22111 111  111 135678899999999987


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      +.+..- .+            .+..+...... ...+++-+++|-|
T Consensus       249 ~s~~~i-i~------------~e~l~~~~~~~~~~~~viDla~Prd  281 (417)
T TIGR01035       249 GAPHPI-VS------------KEDVERALRERTRPLFIIDIAVPRD  281 (417)
T ss_pred             CCCCce-Ec------------HHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            654211 11            11222222111 2457888999987

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.57  E-value=0.0081  Score=53.89  Aligned_cols=56  Identities=18%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||.+|.||..++..|...|.  +|.+++...                       .++.+.++.||+||.+.|.
T Consensus       158 ~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        158 TGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecCC
Confidence            345899999866999999999998887  888886532                       2456889999999999875


Q ss_pred             C
Q 025075           99 P   99 (258)
Q Consensus        99 ~   99 (258)
                      +
T Consensus       213 ~  213 (301)
T PRK14194        213 P  213 (301)
T ss_pred             h
Confidence            5

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=96.57  E-value=0.087  Score=44.97  Aligned_cols=33  Identities=27%  Similarity=0.283  Sum_probs=27.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      +++|.|+||+|.+|+.++..|+..|.  ++++.+.
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~   34 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA   34 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence            45899999999999999999998886  6776543

>PRK05599 hypothetical protein; Provisional

Probab=96.55  E-value=0.18  Score=43.29  Aligned_cols=153  Identities=12%  Similarity=0.138  Sum_probs=79.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCch-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQL-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~-------~~a~~   87 (258)
                      |.+.|+||++.+|..++..|. +|.  .|++.++++++.  ...++...... .+..+.    ...+.       .+.+.
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   76 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGAT-SVHVLSFDAQDLDTHRELVKQTQELAG   76 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccCC-ceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence            358899999999999999988 464  899999876422  22233322110 111111    01111       12234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|+.+|......   .+.   .+....|    +.+.+.+.+.+.+...++.|+++|.-...           .+ .
T Consensus        77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~~-~  144 (246)
T PRK05599         77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGW-----------RA-R  144 (246)
T ss_pred             CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccc-----------cC-C
Confidence            6899999998743211   111   1222223    23344555666554445777777764431           11 2


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~  191 (258)
                      |..-.++.+.-....+-+.++++++  +..|++.
T Consensus       145 ~~~~~Y~asKaa~~~~~~~la~el~--~~~I~v~  176 (246)
T PRK05599        145 RANYVYGSTKAGLDAFCQGLADSLH--GSHVRLI  176 (246)
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHhc--CCCceEE
Confidence            2222344433233355667777764  3455543

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.55  E-value=0.013  Score=53.31  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=49.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++|+|||+ |..|...+..+....-+.+|.+|+++.++.+.  .++.+. ....+..   ..|+++++++||+||.+..
T Consensus       132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~-~g~~v~~---~~d~~~al~~aDiVi~aT~  206 (330)
T PRK08291        132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAE-LGIPVTV---ARDVHEAVAGADIIVTTTP  206 (330)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhc-cCceEEE---eCCHHHHHccCCEEEEeeC
Confidence            358999998 99999887777643335799999998763332  223221 1112222   3577889999999988753

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.54  E-value=0.0068  Score=53.03  Aligned_cols=125  Identities=17%  Similarity=0.144  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCCC----hhH----HHHHhcCCCCCeEEEEeCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVNT----PGV----TADISHMDTGAVVRGFLGQ   79 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~----~~~-----~ei~L~D~~~~----~g~----~~dl~~~~~~~~v~~~~~~   79 (258)
                      +-+..||.|.|| |..|..++.+|...    |+-     ++++++|.+--    +..    ...+.+  +...-   ...
T Consensus        22 ~l~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~--~~~~~---~~~   95 (254)
T cd00762          22 KISEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLAR--FANPE---RES   95 (254)
T ss_pred             ChhhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHH--HcCcc---ccc
Confidence            344469999998 99999999877653    331     38999998641    111    011110  10011   112


Q ss_pred             CchHhhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC--CcHHHHHHHHHHhC
Q 025075           80 PQLENALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAG  155 (258)
Q Consensus        80 ~d~~~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd--~~~~i~t~~~~~~~  155 (258)
                      .++.++++  +.|++|=+.+.+   |-           +.+++.+.|.+++++.+|+-.|||..  -.++   +-+.+.+
T Consensus        96 ~~L~eav~~~kptvlIG~S~~~---g~-----------ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t  158 (254)
T cd00762          96 GDLEDAVEAAKPDFLIGVSRVG---GA-----------FTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTAT  158 (254)
T ss_pred             CCHHHHHHhhCCCEEEEeCCCC---CC-----------CCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhc
Confidence            57899999  999987765433   31           13678899999999999999999986  3332   3343332


Q ss_pred             CCCCCcEEEEe
Q 025075          156 TYDPKKLLGVT  166 (258)
Q Consensus       156 ~~~~~kviG~t  166 (258)
                        +.+.++++.
T Consensus       159 --~G~ai~AtG  167 (254)
T cd00762         159 --EGRAIFASG  167 (254)
T ss_pred             --CCCEEEEEC
Confidence              234677874

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.54  E-value=0.016  Score=52.95  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=31.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..||.|||+ |.+|+.++..|+..|+ ++|.++|.+.
T Consensus        24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~   58 (339)
T PRK07688         24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY   58 (339)
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence            358999998 9999999999999986 6999999874

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.54  E-value=0.015  Score=47.93  Aligned_cols=57  Identities=28%  Similarity=0.480  Sum_probs=44.4

Q ss_pred             CCCCCeEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~-VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      .-...||.|||+ |. +|..++..|...|.  +|.+.+++.                       .++.+.+++||+||.+
T Consensus        41 ~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIsa   94 (168)
T cd01080          41 DLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIVA   94 (168)
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEEc
Confidence            345569999998 87 58889999988876  688887531                       2456789999999999


Q ss_pred             CCCC
Q 025075           96 AGVP   99 (258)
Q Consensus        96 ag~~   99 (258)
                      .+.|
T Consensus        95 t~~~   98 (168)
T cd01080          95 VGKP   98 (168)
T ss_pred             CCCC
Confidence            8765

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.54  E-value=0.1  Score=44.44  Aligned_cols=37  Identities=16%  Similarity=0.222  Sum_probs=32.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.++|.|+|++|.+|.+++..|+.+|.  +|+++++++.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~~   41 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQK   41 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            345899999999999999999999887  8999998774

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.54  E-value=0.044  Score=47.43  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++
T Consensus         6 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   41 (263)
T PRK06200          6 GQVALITGGGSGIGRALVERFLAEGA--RVAVLERSAE   41 (263)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35899999999999999999999887  8999998764

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.54  E-value=0.022  Score=53.66  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=63.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+..+|+|+|+ |.+|..++..|...|. .+|.++|++..+...  +.... .....  . ..++.+.+.++|+||.+.|
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~-~~V~v~~r~~~ra~~--la~~~-g~~~~--~-~~~~~~~l~~aDvVI~aT~  251 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGV-RKITVANRTLERAEE--LAEEF-GGEAI--P-LDELPEALAEADIVISSTG  251 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCC-CeEEEEeCCHHHHHH--HHHHc-CCcEe--e-HHHHHHHhccCCEEEECCC
Confidence            44569999998 9999999998887774 589999987643321  22111 11111  1 1355678899999999876


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHh-hhh-CCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i-~~~-~p~a~viv~tNPvd  141 (258)
                      .+..- .+            .+.++.. ... ..+.+++=+++|-|
T Consensus       252 s~~~~-i~------------~~~l~~~~~~~~~~~~vviDla~Prd  284 (423)
T PRK00045        252 APHPI-IG------------KGMVERALKARRHRPLLLVDLAVPRD  284 (423)
T ss_pred             CCCcE-Ec------------HHHHHHHHhhccCCCeEEEEeCCCCC
Confidence            54211 11            1112222 111 24567888999988

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.53  E-value=0.06  Score=47.94  Aligned_cols=117  Identities=16%  Similarity=0.207  Sum_probs=76.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHH-HHHhcCCCCCeEEEE----eCCCchH-------hhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMDTGAVVRGF----LGQPQLE-------NALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~-~dl~~~~~~~~v~~~----~~~~d~~-------~a~~   87 (258)
                      +.|.|+|||..+|.++|+.|+..|.  .+++..+... ...+ .++.......++..+    ....+.+       ..+.
T Consensus        13 kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   13 KVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999999997  7788876553 1122 333333221112111    1112222       2356


Q ss_pred             CCCEEEEcCCCCCCCCC-c------hhhHHHH----hHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           88 GMDLVIIPAGVPRKPGM-T------RDDLFNI----NAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~-~------r~d~~~~----n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +.|+.|..||..+ .+. +      ....++.    .+-..+...+.+++.+ ++.|++++....
T Consensus        91 ~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG  153 (282)
T KOG1205|consen   91 RVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAG  153 (282)
T ss_pred             CCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEecccc
Confidence            9999999999877 332 1      1123333    4678899999999888 899988887666

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.53  E-value=0.01  Score=57.52  Aligned_cols=95  Identities=25%  Similarity=0.352  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+........++       .+..    .++++.++.||+|+++....
T Consensus       140 gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~----~~l~ell~~aDiV~l~lP~t  205 (526)
T PRK13581        140 GKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVEL----VSLDELLARADFITLHTPLT  205 (526)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEE----EcHHHHHhhCCEEEEccCCC
Confidence            468999998 9999999999988887  99999985432222111       1111    15678999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + +++ .++  |    .   +.+....|++++|+++  ..+|
T Consensus       206 --~-~t~-~li--~----~---~~l~~mk~ga~lIN~aRG~~vd  236 (526)
T PRK13581        206 --P-ETR-GLI--G----A---EELAKMKPGVRIINCARGGIID  236 (526)
T ss_pred             --h-Hhh-cCc--C----H---HHHhcCCCCeEEEECCCCceeC
Confidence              1 111 111  1    2   2333445788999886  3455

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.53  E-value=0.0096  Score=54.45  Aligned_cols=69  Identities=22%  Similarity=0.412  Sum_probs=44.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ||+|+||+|.+|..++..|...++ ..+++++......+..+.+..    ..+...  ..+ .++++++|+||++.|
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~----~~~~~~--~~~-~~~~~~~D~v~~a~g   70 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKG----KELEVN--EAK-IESFEGIDIALFSAG   70 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCC----eeEEEE--eCC-hHHhcCCCEEEECCC
Confidence            699999999999999998887543 236677655544444333221    122211  112 246799999999976

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.53  E-value=0.013  Score=53.36  Aligned_cols=64  Identities=25%  Similarity=0.306  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++|+|||. |.+|+.++..+..-|.  +|..||+...+...  ..+.     ..   ...++++.++.||+|++..
T Consensus       142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~--~~~~-----~~---~~~~Ld~lL~~sDiv~lh~  205 (324)
T COG0111         142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERA--GVDG-----VV---GVDSLDELLAEADILTLHL  205 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhh--cccc-----ce---ecccHHHHHhhCCEEEEcC
Confidence            358999998 9999999999998888  99999984321111  0111     11   1246789999999999975

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.021  Score=53.86  Aligned_cols=125  Identities=26%  Similarity=0.334  Sum_probs=72.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH---HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~---~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++|.|+|+ |.+|..++..|+..|.  +|+++|.+.....   ..++...    .+..+.... ..+...++|+||.++
T Consensus         5 ~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~-~~~~~~~~d~vv~~~   76 (450)
T PRK14106          5 GKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGEY-PEEFLEGVDLVVVSP   76 (450)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCc-chhHhhcCCEEEECC
Confidence            358999998 8899999999999997  8999999753211   1222211    122222111 124567899999998


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCCcHHHHHHHHHHhC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~~~~i~t~~~~~~~  155 (258)
                      |.+... ......-+.+++++.......... + ..+|-+|  |==.+.+.+++++++..+
T Consensus        77 g~~~~~-~~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         77 GVPLDS-PPVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             CCCCCC-HHHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            864221 111111234566655544433322 2 3344454  444455667777776543

>PRK06114 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.055  Score=46.62  Aligned_cols=35  Identities=26%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+|++|.+|.+++..|+..|.  +|++.|++..
T Consensus         9 k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~~   43 (254)
T PRK06114          9 QVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRTD   43 (254)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            4789999999999999999999987  8999998653

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.52  E-value=0.11  Score=46.22  Aligned_cols=36  Identities=36%  Similarity=0.435  Sum_probs=32.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|..++..|...|.  +|++.+++.+
T Consensus         9 gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   44 (296)
T PRK05872          9 GKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEA   44 (296)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35799999999999999999999987  8999998764

>PRK08223 hypothetical protein; Validated

Probab=96.51  E-value=0.023  Score=50.73  Aligned_cols=34  Identities=24%  Similarity=0.301  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||.|||+ |.+|+.++..|+..|+ ++|.|+|-|.
T Consensus        28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~   61 (287)
T PRK08223         28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV   61 (287)
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence            48999998 9999999999999996 6999999874

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.50  E-value=0.015  Score=52.89  Aligned_cols=73  Identities=10%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..+++|||+ |..|...+..+....-+++|.++|+++++..  ..++.+. +...+..   ..|++++++++|+||.+..
T Consensus       127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~-~~~~~~~---~~~~~~~~~~aDiVi~aT~  201 (325)
T PRK08618        127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSK-FNTEIYV---VNSADEAIEEADIIVTVTN  201 (325)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEccC
Confidence            458999997 9999887766554333579999999876432  2223221 1222222   2467889999999998753

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.48  E-value=0.023  Score=50.06  Aligned_cols=84  Identities=19%  Similarity=0.224  Sum_probs=53.0

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLEN   84 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~   84 (258)
                      |.+...+.....+.+++.|+|+ |.+|.+++..|...|.  +|.++|++.++.+.  .++...  . .....  +.+ +.
T Consensus       104 ~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~--~-~~~~~--~~~-~~  174 (270)
T TIGR00507       104 LVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY--G-EIQAF--SMD-EL  174 (270)
T ss_pred             HHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc--C-ceEEe--chh-hh
Confidence            6666655333334568999998 9999999999998875  89999987653322  122211  1 12211  111 23


Q ss_pred             hhCCCCEEEEcCCCC
Q 025075           85 ALTGMDLVIIPAGVP   99 (258)
Q Consensus        85 a~~~aDiVIi~ag~~   99 (258)
                      .+.++|+||.+.+..
T Consensus       175 ~~~~~DivInatp~g  189 (270)
T TIGR00507       175 PLHRVDLIINATSAG  189 (270)
T ss_pred             cccCccEEEECCCCC
Confidence            456899999997653

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.48  E-value=0.017  Score=51.88  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+++|||+ |..+...+..+..-..+++|.+||++.++.  .+.++.+. ....+..   ..+.++++++||+|+.+-
T Consensus       117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~-~~~~v~~---~~~~~eav~~aDIV~taT  190 (301)
T PRK06407        117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKE-FGVDIRP---VDNAEAALRDADTITSIT  190 (301)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHh-cCCcEEE---eCCHHHHHhcCCEEEEec
Confidence            468999997 999988877666544568999999987632  23334432 1223332   246789999999998764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.47  E-value=0.029  Score=53.25  Aligned_cols=122  Identities=19%  Similarity=0.264  Sum_probs=72.9

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      .+||.|+|. |..|.+ ++..|...|.  +|...|.+... ...+|...    .+....+ .+ .+.++++|+||.+.|+
T Consensus         7 ~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~-~~-~~~~~~~d~vv~spgi   76 (461)
T PRK00421          7 IKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIG-HD-AENIKDADVVVYSSAI   76 (461)
T ss_pred             CCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCC-CC-HHHCCCCCEEEECCCC
Confidence            358999998 999999 7989999998  89999987642 12234332    1222222 23 3567899999999988


Q ss_pred             CCCCCCchhhHHHHhHHHHHH--HHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075           99 PRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~--i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~  155 (258)
                      |...- ........+++++.+  ++..+.   ++..+|-+  ||==.+.+.+++++++..+
T Consensus        77 ~~~~~-~~~~a~~~~i~i~~~~e~~~~~~---~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         77 PDDNP-ELVAARELGIPVVRRAEMLAELM---RFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             CCCCH-HHHHHHHCCCcEEeHHHHHHHHH---ccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            75321 112222345555432  322222   12123334  5655566678888877654

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.46  E-value=0.018  Score=49.73  Aligned_cols=73  Identities=15%  Similarity=0.170  Sum_probs=50.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |+|.|+||+|++|+++...|...+.  +|+..-++.+....+.   .........+.....+..+++|.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~~---~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAALA---GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhhc---CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            5899999999999999999998876  8888877665333332   11111222222334567888999999998754

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.46  E-value=0.02  Score=51.98  Aligned_cols=95  Identities=25%  Similarity=0.355  Sum_probs=60.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++++|||. |.+|+.++..+..-|.  +|..||+.+. .+..+...      .. +   .++++.++.||+|++.+.. 
T Consensus       146 gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~-y---~~l~ell~~sDii~l~~Pl-  210 (324)
T COG1052         146 GKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------AR-Y---VDLDELLAESDIISLHCPL-  210 (324)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------ce-e---ccHHHHHHhCCEEEEeCCC-
Confidence            468999997 9999999999885454  9999998764 11111111      11 1   1367899999999998631 


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                       .+ ++|        .++.  .+.+.+..|.+++||++=  =+|
T Consensus       211 -t~-~T~--------hLin--~~~l~~mk~ga~lVNtaRG~~VD  242 (324)
T COG1052         211 -TP-ETR--------HLIN--AEELAKMKPGAILVNTARGGLVD  242 (324)
T ss_pred             -Ch-HHh--------hhcC--HHHHHhCCCCeEEEECCCccccC
Confidence             11 111        1111  123445568899999863  355

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=96.45  E-value=0.0099  Score=52.97  Aligned_cols=97  Identities=15%  Similarity=0.285  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ...+|+.||- |.+|++++..|...|+  .|+.||++..+  ..++.+...  .+.     ..+.|..++||+||...+.
T Consensus        34 s~~~iGFIGL-G~MG~~M~~nLik~G~--kVtV~dr~~~k--~~~f~~~Ga--~v~-----~sPaeVae~sDvvitmv~~  101 (327)
T KOG0409|consen   34 SKTRIGFIGL-GNMGSAMVSNLIKAGY--KVTVYDRTKDK--CKEFQEAGA--RVA-----NSPAEVAEDSDVVITMVPN  101 (327)
T ss_pred             ccceeeEEee-ccchHHHHHHHHHcCC--EEEEEeCcHHH--HHHHHHhch--hhh-----CCHHHHHhhcCEEEEEcCC
Confidence            3569999997 9999999999999998  99999987542  334444432  221     2356889999999998764


Q ss_pred             CC----------------CCCCch-hhHHHHhHHHHHHHHHHhhhh
Q 025075           99 PR----------------KPGMTR-DDLFNINAGIVRTLCEGIAKC  127 (258)
Q Consensus        99 ~~----------------~~g~~r-~d~~~~n~~i~~~i~~~i~~~  127 (258)
                      |.                ++|..- .|.-.-.-...++|.+.+...
T Consensus       102 ~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~  147 (327)
T KOG0409|consen  102 PKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK  147 (327)
T ss_pred             hHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC
Confidence            32                122211 233233455677888877743

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.43  E-value=0.025  Score=50.18  Aligned_cols=86  Identities=17%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             HHHhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCchH
Q 025075            7 LRQAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQLE   83 (258)
Q Consensus         7 ~~~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d~~   83 (258)
                      |.+..++..+ +.+..++.|+|+ |.+|.+++..|...|. .+|.+++++.++.+.+  ++...  . .+..   ..+..
T Consensus       109 ~~~~l~~~~~~~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~-~~V~v~~R~~~~a~~l~~~~~~~--~-~~~~---~~~~~  180 (278)
T PRK00258        109 FVRALEERLGVDLKGKRILILGA-GGAARAVILPLLDLGV-AEITIVNRTVERAEELAKLFGAL--G-KAEL---DLELQ  180 (278)
T ss_pred             HHHHHHhccCCCCCCCEEEEEcC-cHHHHHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHhhhc--c-ceee---cccch
Confidence            5566654222 344468999998 9999999999998884 4899999986533222  22211  1 1111   11334


Q ss_pred             hhhCCCCEEEEcCCCCC
Q 025075           84 NALTGMDLVIIPAGVPR  100 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~  100 (258)
                      +.+.++|+||.+...+.
T Consensus       181 ~~~~~~DivInaTp~g~  197 (278)
T PRK00258        181 EELADFDLIINATSAGM  197 (278)
T ss_pred             hccccCCEEEECCcCCC
Confidence            67889999999865443

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.43  E-value=0.018  Score=51.42  Aligned_cols=58  Identities=19%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +-+..+|+|+|++|.+|.++++.|...+.  +|.+++..                       +.++.+.+++||+||.+.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~-----------------------t~~L~~~~~~aDIvI~At  210 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR-----------------------TQNLPELVKQADIIVGAV  210 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC-----------------------chhHHHHhccCCEEEEcc
Confidence            33446999999844599999999988875  78888641                       124556789999999998


Q ss_pred             CCC
Q 025075           97 GVP   99 (258)
Q Consensus        97 g~~   99 (258)
                      |.|
T Consensus       211 G~~  213 (283)
T PRK14192        211 GKP  213 (283)
T ss_pred             CCC
Confidence            743

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.42  E-value=0.077  Score=45.02  Aligned_cols=69  Identities=16%  Similarity=0.094  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .||.|||+ |.+|..-+..|...|.  +|.+++.+... ...++....   .+......++ .+.++++|+||.+.+
T Consensus        10 k~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~~-~l~~l~~~~---~i~~~~~~~~-~~dl~~~~lVi~at~   78 (205)
T TIGR01470        10 RAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELES-ELTLLAEQG---GITWLARCFD-ADILEGAFLVIAATD   78 (205)
T ss_pred             CeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCCH-HHHHHHHcC---CEEEEeCCCC-HHHhCCcEEEEECCC
Confidence            48999998 9999999999988886  89999876542 222333221   3333333333 357899999998754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.42  E-value=0.0097  Score=53.75  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCC-CChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~-~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++|+| ||+|.||..+...|.++++ +++|.|++.. ...|+.+.+..    ..+.....+   ++++++.|++++ +|
T Consensus         3 ~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g----~~~~V~~l~---~~~f~~vDia~f-ag   73 (322)
T PRK06901          3 TLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNN----KAVEQIAPE---EVEWADFNYVFF-AG   73 (322)
T ss_pred             cceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECC----EEEEEEECC---ccCcccCCEEEE-cC
Confidence            468999 9999999999999988875 5789999876 33343322222    122222222   256899999999 65

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.41  E-value=0.018  Score=52.06  Aligned_cols=70  Identities=16%  Similarity=0.278  Sum_probs=46.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+|+|||+ |.+|...+..+.. .+ +.+|.+|++++++.+  +.++.+.  ...+..   ..++++++++||+|+.+.
T Consensus       125 ~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~---~~~~~~av~~aDIVi~aT  197 (314)
T PRK06141        125 ASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEV---VTDLEAAVRQADIISCAT  197 (314)
T ss_pred             CceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEE---eCCHHHHHhcCCEEEEee
Confidence            458999997 9999999875554 44 469999999875332  2233221  112322   246678899999986654

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.41  E-value=0.049  Score=46.43  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=31.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++.|+|++|.+|..++..|...|.  .|+++|+++.
T Consensus         6 ~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~~   40 (253)
T PRK08217          6 KVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQE   40 (253)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4799999999999999999998886  7999998764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.41  E-value=0.014  Score=54.91  Aligned_cols=68  Identities=25%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhh-hCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENA-LTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a-~~~aDiVIi~   95 (258)
                      |||.|+|+ |.+|..++..|...|.  +++++|.+++....  +....   .+..+.+    ...++++ ++++|.||++
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~~~--~~~~~---~~~~~~gd~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERLRR--LQDRL---DVRTVVGNGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHH--HHhhc---CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence            58999998 9999999999998887  89999987653222  22100   1111111    1123444 7899999998


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus        73 ~   73 (453)
T PRK09496         73 T   73 (453)
T ss_pred             c
Confidence            5

>PRK06940 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.06  Score=47.25  Aligned_cols=110  Identities=17%  Similarity=0.200  Sum_probs=58.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEE----EeCCCchHhhh------CCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRG----FLGQPQLENAL------TGM   89 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~----~~~~~d~~~a~------~~a   89 (258)
                      .+.|+|| |.+|.+++..|. .|.  +|++.|++.....  ..++....  ..+..    +....++++.+      ...
T Consensus         4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPV   77 (275)
T ss_pred             EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence            4556676 899999999886 665  8999998764221  12232211  11111    11111122222      358


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                      |++|.+||.... ..+-.+.+..|+.-...+++.+.++ .+++.+++++.
T Consensus        78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS  126 (275)
T PRK06940         78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS  126 (275)
T ss_pred             CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence            999999997532 2223445666765554444444433 22344455544

>PRK07775 short chain dehydrogenase; Provisional

Probab=96.40  E-value=0.076  Score=46.44  Aligned_cols=36  Identities=19%  Similarity=0.177  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++.+.|+||+|.+|.+++..|+.+|.  +|++.+++..
T Consensus        10 ~~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~~   45 (274)
T PRK07775         10 RRPALVAGASSGIGAATAIELAAAGF--PVALGARRVE   45 (274)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            34799999999999999999999887  8888887653

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.39  E-value=0.024  Score=55.98  Aligned_cols=137  Identities=19%  Similarity=0.227  Sum_probs=83.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCch---H-hhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~---~-~a~~~aDiVIi~   95 (258)
                      ..+|.|+|. |.+|+.++..|...+.  +++++|.|+++-+.  +.+...  .+- +-..+|.   + ..+++||.+|++
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~v~~--~~~~g~--~v~-~GDat~~~~L~~agi~~A~~vvv~  471 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDHIET--LRKFGM--KVF-YGDATRMDLLESAGAAKAEVLINA  471 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHHHHH--HHhcCC--eEE-EEeCCCHHHHHhcCCCcCCEEEEE
Confidence            368999998 9999999999998887  89999998753222  222221  111 1112232   1 235689999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~  174 (258)
                      .+.+           +.|.    .++..+++..|+..++. ..|+.+      .+.+++.+   -+.++--+...+.++-
T Consensus       472 ~~d~-----------~~n~----~i~~~ar~~~p~~~iiaRa~d~~~------~~~L~~~G---ad~v~~e~~e~sl~l~  527 (621)
T PRK03562        472 IDDP-----------QTSL----QLVELVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKSG  527 (621)
T ss_pred             eCCH-----------HHHH----HHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEehhhHhHHHHHH
Confidence            5311           2343    34555666678876655 444443      12334433   3445444555556666


Q ss_pred             HHHHHHhCCCCCce
Q 025075          175 TFVAEVLGLDPRDV  188 (258)
Q Consensus       175 ~~la~~l~v~~~~v  188 (258)
                      +.+-+.+|++++++
T Consensus       528 ~~~L~~lg~~~~~~  541 (621)
T PRK03562        528 RLVLESLGLGPYEA  541 (621)
T ss_pred             HHHHHHcCCCHHHH
Confidence            77777888887665

>PLN00203 glutamyl-tRNA reductase

Probab=96.38  E-value=0.026  Score=54.54  Aligned_cols=105  Identities=14%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ...||+|||+ |.+|..++..|...|. .+|.+++++.++...+  ........+... ...++.+++.++|+||.+.+.
T Consensus       265 ~~kkVlVIGA-G~mG~~~a~~L~~~G~-~~V~V~nRs~era~~L--a~~~~g~~i~~~-~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        265 ASARVLVIGA-GKMGKLLVKHLVSKGC-TKMVVVNRSEERVAAL--REEFPDVEIIYK-PLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCEEEEEeC-HHHHHHHHHHHHhCCC-CeEEEEeCCHHHHHHH--HHHhCCCceEee-cHhhHHHHHhcCCEEEEccCC
Confidence            3569999998 9999999998888774 5899999886543322  211001112211 123566789999999987654


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh----CCCcEEEEecCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC----CPNATVNLISNPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~----~p~a~viv~tNPvd  141 (258)
                      +. |=.            .++.++.+.+.    ...-++|=++.|=|
T Consensus       340 ~~-pvI------------~~e~l~~~~~~~~~~~~~~~~IDLAvPRd  373 (519)
T PLN00203        340 ET-PLF------------LKEHVEALPPASDTVGGKRLFVDISVPRN  373 (519)
T ss_pred             CC-Cee------------CHHHHHHhhhcccccCCCeEEEEeCCCCC
Confidence            32 211            13333333221    12236667899977

>PLN02858 fructose-bisphosphate aldolase

Probab=96.38  E-value=0.022  Score=60.97  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=50.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++++||++||. |.+|..++..|...|+  +|..||+++.+..  ++.....  ..     ..++.+++++||+||++..
T Consensus       322 ~~~~~IGfIGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~Ga--~~-----~~s~~e~~~~aDvVi~~V~  389 (1378)
T PLN02858        322 KPVKRIGFIGL-GAMGFGMASHLLKSNF--SVCGYDVYKPTLV--RFENAGG--LA-----GNSPAEVAKDVDVLVIMVA  389 (1378)
T ss_pred             cCCCeEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHcCC--ee-----cCCHHHHHhcCCEEEEecC
Confidence            34579999997 9999999999999998  8999998764322  2322211  11     2356788999999999874

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.38  E-value=0.016  Score=52.15  Aligned_cols=93  Identities=20%  Similarity=0.291  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|+|. |.+|+.++..|...|.  +|..||+....        ..    ....  ..++++.++.||+|+++....
T Consensus       122 gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp~t  184 (303)
T PRK06436        122 NKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLPLT  184 (303)
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCCCC
Confidence            468999997 9999999988877777  89999975321        00    0000  135788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~  142 (258)
                        + +++ .++  |       .+.+....|++++|+++  .++|.
T Consensus       185 --~-~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~  216 (303)
T PRK06436        185 --D-ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDK  216 (303)
T ss_pred             --c-hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCH
Confidence              1 111 111  1       22334445889999986  56773

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=96.38  E-value=0.021  Score=46.64  Aligned_cols=65  Identities=14%  Similarity=0.141  Sum_probs=42.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++|+|||. |.-|.+.+.+|...|+  +|..-.+........-..+..     .    ..+.+|+.+.||+|+++.
T Consensus         4 ~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~A~~~Gf-----~----v~~~~eAv~~aDvV~~L~   68 (165)
T PF07991_consen    4 GKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEKAKADGF-----E----VMSVAEAVKKADVVMLLL   68 (165)
T ss_dssp             TSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHHHHHTT------E----CCEHHHHHHC-SEEEE-S
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHHHHHCCC-----e----eccHHHHHhhCCEEEEeC
Confidence            358999998 9999999999999998  777776655422221122221     1    135679999999999985

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.37  E-value=0.025  Score=48.70  Aligned_cols=34  Identities=32%  Similarity=0.476  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus        22 ~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~   55 (228)
T cd00757          22 ARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV   55 (228)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            48999998 9999999999999986 6999999764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK08017 oxidoreductase; Provisional

Probab=96.36  E-value=0.049  Score=46.69  Aligned_cols=35  Identities=23%  Similarity=0.151  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|.+++..|...|.  +|++.+++.+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~~   37 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKPD   37 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            3799999999999999999998887  8899988754

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.35  E-value=0.024  Score=50.52  Aligned_cols=114  Identities=16%  Similarity=0.250  Sum_probs=70.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEE----eCCCchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGF----LGQPQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~----~~~~d~~~a~~~aD   90 (258)
                      ..|.|+||.+.+|..+++.++++|-  .+++||++..  ...+..+.+..    +.+++...    ..-...++...+.|
T Consensus        39 ~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V~  116 (300)
T KOG1201|consen   39 EIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDVD  116 (300)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCce
Confidence            3688999978999999999999986  8999999985  22233333211    11111100    00012345567999


Q ss_pred             EEEEcCCCC-CCCC--CchhhH---HHHh----HHHHHHHHHHhhhhCCCcEEEEec
Q 025075           91 LVIIPAGVP-RKPG--MTRDDL---FNIN----AGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        91 iVIi~ag~~-~~~g--~~r~d~---~~~n----~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++|.-||+. .++.  .++.++   ++-|    ..+++.+.+.+.+.+ ++.++.++
T Consensus       117 ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~-~GHIV~Ia  172 (300)
T KOG1201|consen  117 ILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENN-NGHIVTIA  172 (300)
T ss_pred             EEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcC-CceEEEeh
Confidence            999999963 3333  233221   2223    457789999998764 66666554

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.35  E-value=0.025  Score=49.26  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=30.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||+|+|+ |.+|+.++..|+..|. ++|.++|.|.
T Consensus        25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~   58 (240)
T TIGR02355        25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT   58 (240)
T ss_pred             CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence            48999998 9999999999999885 6999999875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.34  E-value=0.024  Score=51.34  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=49.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...+++|||+ |..+...+..+..-..+++|.+||+++++.+.  ..+.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       127 d~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIV~taT  200 (315)
T PRK06823        127 HVSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNT---TLDAAEVAHAANLIVTTT  200 (315)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEE---ECCHHHHhcCCCEEEEec
Confidence            3458999997 99998888766654446899999998764332  223221  123332   246789999999998764

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.26  Score=42.06  Aligned_cols=114  Identities=13%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHh-------hhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLEN-------ALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~-------a~~   87 (258)
                      +.+.|+||++.+|..++..|++.|.  +|++.++++...  ...++.....  .+..+.    ...++++       .+.
T Consensus         6 k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          6 SIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALTD--NVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             eEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  899999876421  1122221111  111111    1112221       123


Q ss_pred             -CCCEEEEcCCCCCCCC----Cchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG----MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g----~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|..+|....++    .+..+   .+..|.    .+.+.+.+.+.+....+.|+++|.
T Consensus        82 ~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS  144 (227)
T PRK08862         82 RAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS  144 (227)
T ss_pred             CCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence             6899999997432221    12212   222232    344555666665544567777764

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=96.32  E-value=0.098  Score=44.57  Aligned_cols=31  Identities=16%  Similarity=0.203  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD   53 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D   53 (258)
                      +.+.|+|++|.+|..++..|+..|.  ++++..
T Consensus         4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~   34 (246)
T PRK12938          4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC   34 (246)
T ss_pred             CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence            4689999999999999999999886  677754

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=96.30  E-value=0.034  Score=49.01  Aligned_cols=88  Identities=17%  Similarity=0.157  Sum_probs=53.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-hCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-LTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~--~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-~~~aDiVIi~a   96 (258)
                      .+||+|||. |.+|+.++..|...+.  +.-+.++|++.++.  ..+...     ...   .+|+++. ....|+||-+|
T Consensus         2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~--~~~~~~-----~~~---~~~l~~ll~~~~DlVVE~A   70 (267)
T PRK13301          2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAALTRNAADLP--PALAGR-----VAL---LDGLPGLLAWRPDLVVEAA   70 (267)
T ss_pred             ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEEecCCHHHH--HHhhcc-----Ccc---cCCHHHHhhcCCCEEEECC
Confidence            469999998 9999999988866432  22344566654322  222221     111   2356553 47899999998


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi  134 (258)
                      +                ...++++++.+-+.+.|-+++
T Consensus        71 ~----------------~~av~e~~~~iL~~g~dlvv~   92 (267)
T PRK13301         71 G----------------QQAIAEHAEGCLTAGLDMIIC   92 (267)
T ss_pred             C----------------HHHHHHHHHHHHhcCCCEEEE
Confidence            6                334566666666555554443

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.30  E-value=0.032  Score=47.01  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||+|+|+ |.+|+.++..|+..|. ++|.++|.+.
T Consensus        20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~   53 (198)
T cd01485          20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL   53 (198)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence            38999998 9999999999999986 6899999773

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.30  E-value=0.026  Score=53.34  Aligned_cols=129  Identities=21%  Similarity=0.166  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .+||+|+|. |.-|.+++..|...|.  ++..+|.++......+.  ......+....+..+. +...++|+||.+-|+|
T Consensus         7 ~~kv~V~GL-G~sG~a~a~~L~~~G~--~v~v~D~~~~~~~~~~~--~~~~~~i~~~~g~~~~-~~~~~~d~vV~SPGi~   80 (448)
T COG0771           7 GKKVLVLGL-GKSGLAAARFLLKLGA--EVTVSDDRPAPEGLAAQ--PLLLEGIEVELGSHDD-EDLAEFDLVVKSPGIP   80 (448)
T ss_pred             CCEEEEEec-ccccHHHHHHHHHCCC--eEEEEcCCCCccchhhh--hhhccCceeecCccch-hccccCCEEEECCCCC
Confidence            569999998 9999999999999996  99999987642111111  0011123323333443 6789999999998876


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHHhC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~~~  155 (258)
                      ...-. -.......+++.-++--..+...+.-+|-| =||-=.+.|.+++++++..+
T Consensus        81 ~~~p~-v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          81 PTHPL-VEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCCHH-HHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            53321 111224455555555444443311113333 26766667778888877654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.28  E-value=0.025  Score=51.39  Aligned_cols=92  Identities=21%  Similarity=0.179  Sum_probs=57.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      .++|+|||. |.+|..++..+. .-|.  +|..+|.........++       ... +   .++++.++.||+|++....
T Consensus       145 gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~-~---~~l~ell~~sDvv~lh~pl  210 (323)
T PRK15409        145 HKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NAR-Y---CDLDTLLQESDFVCIILPL  210 (323)
T ss_pred             CCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcE-e---cCHHHHHHhCCEEEEeCCC
Confidence            368999998 999999998886 5565  88888875321111111       111 1   2578899999999998632


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                        .+ +++. ++  |    ++.   +.+..|++++||++-
T Consensus       211 --t~-~T~~-li--~----~~~---l~~mk~ga~lIN~aR  237 (323)
T PRK15409        211 --TD-ETHH-LF--G----AEQ---FAKMKSSAIFINAGR  237 (323)
T ss_pred             --Ch-HHhh-cc--C----HHH---HhcCCCCeEEEECCC
Confidence              11 1111 11  1    222   334458999999873

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.27  E-value=0.083  Score=44.69  Aligned_cols=70  Identities=14%  Similarity=0.087  Sum_probs=45.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+||.|||+ |.+|...+..|...|.  +|.+++.+... ...++.+..   .+.......+ ++.+.++|+||.+.+
T Consensus        10 ~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~   79 (202)
T PRK06718         10 NKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN   79 (202)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence            358999998 9999999998888885  89999864322 222333321   1221111122 356899999888753

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.27  E-value=0.023  Score=51.66  Aligned_cols=72  Identities=17%  Similarity=0.261  Sum_probs=49.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+++|||+ |..+...+..|.. .+ +++|.+|+++.++++.  .++.+. ....+..   ..++++++++||+|+.+.
T Consensus       129 ~~~v~iiGa-G~qA~~~~~al~~~~~-i~~v~V~~R~~~~a~~~a~~~~~~-~g~~v~~---~~~~~~av~~aDiVvtaT  202 (326)
T TIGR02992       129 SSVVAIFGA-GMQARLQLEALTLVRD-IRSARIWARDSAKAEALALQLSSL-LGIDVTA---ATDPRAAMSGADIIVTTT  202 (326)
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHhCC-ccEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhccCCEEEEec
Confidence            358999997 9999998887764 44 5799999998764332  233221 1112221   356788999999999875


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      .
T Consensus       203 ~  203 (326)
T TIGR02992       203 P  203 (326)
T ss_pred             C
Confidence            3

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK07201 short chain dehydrogenase; Provisional

Probab=96.26  E-value=0.082  Score=52.08  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=65.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhhC----
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENALT----   87 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~----   87 (258)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++++++++..  ...++.....  .+..+.    ...+++++++    
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~  444 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKGG--TAHAYTCDLTDSAAVDHTVKDILA  444 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHH
Confidence            3346799999999999999999999887  899999876421  1122222111  121111    1112233333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---C-----chhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 ---GMDLVIIPAGVPRKPG---M-----TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ---~aDiVIi~ag~~~~~g---~-----~r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                         ..|++|.++|......   .     +-...+..|+..    ++.+.+.+.+. ..+.++++|.
T Consensus       445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  509 (657)
T PRK07201        445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVSS  509 (657)
T ss_pred             hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEECC
Confidence               6899999998642211   0     112234555544    34444444443 3456666653

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.26  E-value=0.027  Score=50.95  Aligned_cols=27  Identities=26%  Similarity=0.172  Sum_probs=24.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLV   46 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~   46 (258)
                      ++||+|+||+|.+|..+..+|...+.+
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~   28 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDI   28 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCe
Confidence            579999999999999999999888743

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.26  E-value=0.062  Score=50.63  Aligned_cols=117  Identities=20%  Similarity=0.262  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh-------hCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi   91 (258)
                      .+++.|+|++|.+|..++..|...|.  ++++.|+........++........+. ++....++++.       ....|+
T Consensus       210 g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        210 GKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            35799999999999999999999887  899998854322222222111000111 11111111111       225899


Q ss_pred             EEEcCCCCCCC---CCc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           92 VIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      ||.++|.....   ..+   -...+..|+.-...+.+.+...   .+.+.|+++|.
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS  343 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS  343 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence            99999865321   111   1234556766666666666542   24567777664

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.25  E-value=0.14  Score=43.26  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+|.|+||+|.+|+.++..|.+.|.  +|++.+++++
T Consensus         6 ~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~~   40 (238)
T PRK05786          6 KKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNEN   40 (238)
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            4899999999999999999999887  8999998764

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.25  E-value=0.024  Score=52.06  Aligned_cols=71  Identities=17%  Similarity=0.287  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+++|||+ |..+...+..+..-.-+.+|.+||+++++.  ...++.+.  ...+..   ..+.++++++||+|+.+.
T Consensus       129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT  201 (346)
T PRK07589        129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT  201 (346)
T ss_pred             CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence            458999997 999988776555433468999999987632  23344431  112332   246889999999999865

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=96.25  E-value=0.2  Score=43.49  Aligned_cols=32  Identities=22%  Similarity=0.224  Sum_probs=27.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      .+.|+||+|.+|.+++..|...|.  +|++.+.+
T Consensus         3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~   34 (267)
T TIGR02685         3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR   34 (267)
T ss_pred             EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence            689999999999999999999887  78886543

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.25  E-value=0.01  Score=54.40  Aligned_cols=36  Identities=31%  Similarity=0.460  Sum_probs=29.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +++||+|+||+|++|+.++..|...+.. +|+++...
T Consensus         2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s   37 (349)
T PRK08664          2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAAS   37 (349)
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcC
Confidence            4679999999999999999988876654 78888443

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=96.25  E-value=0.025  Score=50.93  Aligned_cols=104  Identities=18%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----hhHHHHHhcCCCCCeEEEEeC----CCchHhhh--CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG----QPQLENAL--TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~--~~a   89 (258)
                      ++|.|+||+|++|++.+..|..+|.  +++++|.-..     ...+..+.+.  ...+....+    ...+++.+  ..-
T Consensus         3 ~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~--~~~v~f~~~Dl~D~~~L~kvF~~~~f   78 (343)
T KOG1371|consen    3 KHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGE--GKSVFFVEGDLNDAEALEKLFSEVKF   78 (343)
T ss_pred             cEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCC--CCceEEEEeccCCHHHHHHHHhhcCC
Confidence            5899999999999999999999998  8999997432     1122223332  112322211    11222323  256


Q ss_pred             CEEEEcCCCCCC-C-CCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075           90 DLVIIPAGVPRK-P-GMTRDDLFNINAGIVRTLCEGIAKCC  128 (258)
Q Consensus        90 DiVIi~ag~~~~-~-g~~r~d~~~~n~~i~~~i~~~i~~~~  128 (258)
                      |-|++.|+...- + -+....+...|+--...+.+.+++++
T Consensus        79 d~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~  119 (343)
T KOG1371|consen   79 DAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN  119 (343)
T ss_pred             ceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence            888887754221 1 12345667788888888999999887

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.23  E-value=0.028  Score=45.91  Aligned_cols=57  Identities=26%  Similarity=0.445  Sum_probs=40.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      -+.++|+|||.+..||..++.+|..++-  .+.+.+.                       .|.++++.++.||+||.++|
T Consensus        34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~-----------------------~T~~l~~~~~~ADIVVsa~G   88 (160)
T PF02882_consen   34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHS-----------------------KTKNLQEITRRADIVVSAVG   88 (160)
T ss_dssp             TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-T-----------------------TSSSHHHHHTTSSEEEE-SS
T ss_pred             CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccC-----------------------CCCcccceeeeccEEeeeec
Confidence            4446999999988999999999988764  4555432                       13466788999999999998


Q ss_pred             CC
Q 025075           98 VP   99 (258)
Q Consensus        98 ~~   99 (258)
                      .|
T Consensus        89 ~~   90 (160)
T PF02882_consen   89 KP   90 (160)
T ss_dssp             ST
T ss_pred             cc
Confidence            54

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.23  E-value=0.062  Score=40.74  Aligned_cols=67  Identities=25%  Similarity=0.343  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~a   96 (258)
                      +||+|||+ |.+|......+... +...-+.++|.++++....  ... +  .+..+   +|+++.++  +.|+|+++.
T Consensus         1 i~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~--~~~-~--~~~~~---~~~~~ll~~~~~D~V~I~t   70 (120)
T PF01408_consen    1 IRVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAF--AEK-Y--GIPVY---TDLEELLADEDVDAVIIAT   70 (120)
T ss_dssp             EEEEEEST-SHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHH--HHH-T--TSEEE---SSHHHHHHHTTESEEEEES
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHH--HHH-h--cccch---hHHHHHHHhhcCCEEEEec
Confidence            58999998 99999988777665 4443446899876533322  111 1  11122   46777776  899999985

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.22  E-value=0.067  Score=47.18  Aligned_cols=70  Identities=24%  Similarity=0.250  Sum_probs=40.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||+|||+ |.+|..++..+...+...=..+++.+.......+....    ....   .+|+++.-.+.|+|+.+++
T Consensus         1 m~rVgIiG~-G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~----~~~~---~~d~~~l~~~~DvVve~t~   70 (265)
T PRK13303          1 MMKVAMIGF-GAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGE----AVRV---VSSVDALPQRPDLVVECAG   70 (265)
T ss_pred             CcEEEEECC-CHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhcc----CCee---eCCHHHhccCCCEEEECCC
Confidence            579999998 99999999888765433222334443322111111110    1221   2455443356999999975

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.22  E-value=0.21  Score=43.04  Aligned_cols=114  Identities=18%  Similarity=0.171  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHh---hhCCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LEN---ALTGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~---a~~~aDi   91 (258)
                      +++.|+|++|.+|..++..|+..|.  +|++.+++.++..  ..++.... ...+..+. .-+|   +.+   .+...|+
T Consensus         8 k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          8 KRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            5899999999999999999999887  8999998764221  12232211 11111111 1112   111   2457999


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           92 VIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|.++|......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.++++|.
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss  140 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG  140 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence            999998643111   121   123444544    4455555555433 356665554

>PRK06123 short chain dehydrogenase; Provisional

Probab=96.21  E-value=0.15  Score=43.51  Aligned_cols=33  Identities=30%  Similarity=0.355  Sum_probs=27.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+.|+|++|.+|++++..|...|.  .+++.+.+.
T Consensus         4 ~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~   36 (248)
T PRK06123          4 VMIITGASRGIGAATALLAAERGY--AVCLNYLRN   36 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence            589999999999999999998886  677776543

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.21  E-value=0.049  Score=47.78  Aligned_cols=75  Identities=19%  Similarity=0.217  Sum_probs=43.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +||||+|.||+|.+|+.+...+.+.+...=+..+|+......-.|..+......+.. ..+.|+.....++|++|=
T Consensus         1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv-~v~~~~~~~~~~~DV~ID   75 (266)
T COG0289           1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGV-PVTDDLLLVKADADVLID   75 (266)
T ss_pred             CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCc-eeecchhhcccCCCEEEE
Confidence            368999999999999999998887764444455666542111112221111001111 112345566788888775

>PLN02503 fatty acyl-CoA reductase 2

Probab=96.21  E-value=0.07  Score=52.53  Aligned_cols=107  Identities=16%  Similarity=0.048  Sum_probs=65.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---hhHHH--HHhc-----------CC-----CCCeEEEEeC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTA--DISH-----------MD-----TGAVVRGFLG   78 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~---~g~~~--dl~~-----------~~-----~~~~v~~~~~   78 (258)
                      ++|.|+||+|++|..++..|+..+ -+.+|+++.+...   ..+.+  ++.+           ..     ...++..+.+
T Consensus       120 k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v~G  199 (605)
T PLN02503        120 KNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPVVG  199 (605)
T ss_pred             CEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEEEe
Confidence            489999999999999998887643 3568888877542   11111  1111           00     0112332221


Q ss_pred             --C--------CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075           79 --Q--------PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (258)
Q Consensus        79 --~--------~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~  128 (258)
                        +        .+++...++.|+||.+|+... ...+..+....|+....++++.+.+..
T Consensus       200 Dl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~  258 (605)
T PLN02503        200 NVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCK  258 (605)
T ss_pred             eCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcC
Confidence              1        122333467999999987532 223345567789999999998887653

>PRK06484 short chain dehydrogenase; Validated

Probab=96.19  E-value=0.054  Score=51.88  Aligned_cols=153  Identities=17%  Similarity=0.211  Sum_probs=81.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEE-EEeCCCchHhhh-------CCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVR-GFLGQPQLENAL-------TGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~-~~~~~~d~~~a~-------~~aD   90 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|+++.....+  ++.. ... .+. ++....++.+.+       ...|
T Consensus       270 k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-~~~-~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        270 RVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGD-EHL-SVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-cee-EEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            5789999999999999999999987  899999876422111  1111 100 011 011111222222       3579


Q ss_pred             EEEEcCCCCC--CC--CCch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           91 LVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        91 iVIi~ag~~~--~~--g~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ++|.++|...  .+  ..+.   ...+..|+.-...+.+.+..+ ...+.|+++|.....           . +.|..-.
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~-~~~~~~~  413 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASL-----------L-ALPPRNA  413 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhc-----------C-CCCCCch
Confidence            9999998742  11  1121   234555655544444444333 234677777754331           1 1333333


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~  191 (258)
                      ++.+..--..+-+.+++++.  +..|++.
T Consensus       414 Y~asKaal~~l~~~la~e~~--~~gI~vn  440 (520)
T PRK06484        414 YCASKAAVTMLSRSLACEWA--PAGIRVN  440 (520)
T ss_pred             hHHHHHHHHHHHHHHHHHhh--hhCeEEE
Confidence            44433223345566676663  3445543

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.15  E-value=0.048  Score=47.52  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..||+|+|+ |.+|+.++..|+..|. +++.++|.+.
T Consensus        32 ~~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   66 (245)
T PRK05690         32 AARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT   66 (245)
T ss_pred             CCeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence            359999998 9999999999999885 6999999874

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.14  E-value=0.023  Score=46.44  Aligned_cols=77  Identities=21%  Similarity=0.251  Sum_probs=47.3

Q ss_pred             HHhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            8 RQAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         8 ~~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      ..++.|... ...-+++.|+|- |.+|..+|..|...|.  .|..+|+|+.+... -..+..   .+.      .+++++
T Consensus        10 ~d~i~r~t~~~l~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alq-A~~dGf---~v~------~~~~a~   76 (162)
T PF00670_consen   10 VDGIMRATNLMLAGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQ-AAMDGF---EVM------TLEEAL   76 (162)
T ss_dssp             HHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHH-HHHTT----EEE-------HHHHT
T ss_pred             HHHHHhcCceeeCCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHH-hhhcCc---Eec------CHHHHH
Confidence            355666654 222358999998 9999999999999886  89999998743221 122321   221      357899


Q ss_pred             CCCCEEEEcCC
Q 025075           87 TGMDLVIIPAG   97 (258)
Q Consensus        87 ~~aDiVIi~ag   97 (258)
                      +.+|++|.+.|
T Consensus        77 ~~adi~vtaTG   87 (162)
T PF00670_consen   77 RDADIFVTATG   87 (162)
T ss_dssp             TT-SEEEE-SS
T ss_pred             hhCCEEEECCC
Confidence            99999888765

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK06484 short chain dehydrogenase; Validated

Probab=96.14  E-value=0.077  Score=50.78  Aligned_cols=114  Identities=18%  Similarity=0.175  Sum_probs=63.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhh-------hCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENA-------LTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aD   90 (258)
                      +.+.|+||++.+|..++..|...|.  +|++++++.+...  ..++... .. .+. ++....++++.       +...|
T Consensus         6 k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~-~~~~D~~~~~~~~~~~~~~~~~~g~iD   81 (520)
T PRK06484          6 RVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPD-HH-ALAMDVSDEAQIREGFEQLHREFGRID   81 (520)
T ss_pred             eEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc-ee-EEEeccCCHHHHHHHHHHHHHHhCCCC
Confidence            3688999999999999999999987  8999998764221  1112110 00 011 11111122222       24689


Q ss_pred             EEEEcCCCCC---CC--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           91 LVIIPAGVPR---KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~---~~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ++|+++|...   .+  ..+-   ...+..|+.    +.+.+.+.+.+....+.+++++.
T Consensus        82 ~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS  141 (520)
T PRK06484         82 VLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS  141 (520)
T ss_pred             EEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence            9999998621   11  1111   223445544    44555555544333346766664

>PLN02306 hydroxypyruvate reductase

Probab=96.12  E-value=0.043  Score=51.07  Aligned_cols=101  Identities=21%  Similarity=0.278  Sum_probs=58.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhHH---HHHhcC---CCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~~---~dl~~~---~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      .++|+|||. |.+|+.++..+. .-|.  +|..||........   ..+...   ....... .....++++.++.||+|
T Consensus       165 gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        165 GQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVT-WKRASSMEEVLREADVI  240 (386)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhccccccccccccc-ccccCCHHHHHhhCCEE
Confidence            368999998 999999998875 4565  89999986531110   011000   0000011 01124788999999999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++.+-.  .+ ++        -.++.  .+.+....|++++||++
T Consensus       241 ~lh~Pl--t~-~T--------~~lin--~~~l~~MK~ga~lIN~a  272 (386)
T PLN02306        241 SLHPVL--DK-TT--------YHLIN--KERLALMKKEAVLVNAS  272 (386)
T ss_pred             EEeCCC--Ch-hh--------hhhcC--HHHHHhCCCCeEEEECC
Confidence            997521  11 11        11111  12233445889999987

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=96.11  E-value=0.055  Score=51.16  Aligned_cols=129  Identities=18%  Similarity=0.287  Sum_probs=73.9

Q ss_pred             eEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           22 KVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        22 KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      ||.++|. |..|.+ +|..|...|.  +|..+|.+... ...+|...    .+....+ .+ .+.++++|+||.+.|+|.
T Consensus         1 ~~~~iGi-ggsGm~~la~~L~~~G~--~v~~~D~~~~~-~~~~l~~~----gi~~~~g-~~-~~~~~~~d~vV~spgi~~   70 (448)
T TIGR01082         1 KIHFVGI-GGIGMSGIAEILLNRGY--QVSGSDIAENA-TTKRLEAL----GIPIYIG-HS-AENLDDADVVVVSAAIKD   70 (448)
T ss_pred             CEEEEEE-CHHHHHHHHHHHHHCCC--eEEEECCCcch-HHHHHHHC----cCEEeCC-CC-HHHCCCCCEEEECCCCCC
Confidence            4889998 999998 8999999998  89999976543 22234322    2222223 33 356789999999988875


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ..- ........+++++.+.- .+.+...+..+|-+  ||==.+.+.+++.+++..+ +++.-++
T Consensus        71 ~~p-~~~~a~~~~i~v~~~~e-l~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g-~~~~~~~  132 (448)
T TIGR01082        71 DNP-EIVEAKERGIPVIRRAE-MLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG-LDPTVVV  132 (448)
T ss_pred             CCH-HHHHHHHcCCceEeHHH-HHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC-CCCeEEE
Confidence            321 12222234555443221 12122111123334  5655566677888777654 5443333

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.11  E-value=0.037  Score=52.31  Aligned_cols=125  Identities=19%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--H-HHHhcCCCCCeEEEEeCC-Cch---HhhhCCCCEEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--T-ADISHMDTGAVVRGFLGQ-PQL---ENALTGMDLVII   94 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~-~dl~~~~~~~~v~~~~~~-~d~---~~a~~~aDiVIi   94 (258)
                      ||.|+|+ |..|.+.+..|...|.  +|.++|.+.....  . ..|....    +....+. .++   .+.+.+.|.||.
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~--~V~~~D~~~~~~~~~~~~~l~~~g----i~~~~g~~~~~~~~~~~~~~~d~vv~   74 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGW--EVVVSDRNDSPELLERQQELEQEG----ITVKLGKPLELESFQPWLDQPDLVVV   74 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCchhhHHHHHHHHHcC----CEEEECCccchhhhhHHhhcCCEEEE
Confidence            7999998 9999999999999997  8999998764211  1 1133221    2212221 111   135788999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~  155 (258)
                      +.|.+... .........+++++.++.-..+... +..+|-+  ||-=.+.+.+++.++...+
T Consensus        75 s~gi~~~~-~~~~~a~~~~i~v~~~~~~~~~~~~-~~~~I~VTGT~GKTTTt~ml~~iL~~~g  135 (459)
T PRK02705         75 SPGIPWDH-PTLVELRERGIEVIGEIELAWRALK-HIPWVGITGTNGKTTVTALLAHILQAAG  135 (459)
T ss_pred             CCCCCCCC-HHHHHHHHcCCcEEEhHHHHHHhhc-CCCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            98886432 1122223456666665544333222 2223444  5655566778888887654

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.09  E-value=0.096  Score=50.49  Aligned_cols=106  Identities=14%  Similarity=0.146  Sum_probs=62.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEE-----------eCCCch--
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF-----------LGQPQL--   82 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~-----------~~~~d~--   82 (258)
                      ..++.||+|+|+ |.+|...+..+...|-  +|..+|+++++ .++..+.-. + ..+...           ..+.++  
T Consensus       162 ~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~-~-v~i~~~e~~~~~~gya~~~s~~~~~  236 (509)
T PRK09424        162 KVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAE-F-LELDFEEEGGSGDGYAKVMSEEFIK  236 (509)
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCe-E-EEeccccccccccchhhhcchhHHH
Confidence            344679999998 9999998888888885  79999998752 222222111 0 001000           001121  


Q ss_pred             ------HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           83 ------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        83 ------~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                            .+.++++|+||.|+|.|.++...         -+.++..+.+   .|.+.++.++-+
T Consensus       237 ~~~~~~~~~~~gaDVVIetag~pg~~aP~---------lit~~~v~~m---kpGgvIVdvg~~  287 (509)
T PRK09424        237 AEMALFAEQAKEVDIIITTALIPGKPAPK---------LITAEMVASM---KPGSVIVDLAAE  287 (509)
T ss_pred             HHHHHHHhccCCCCEEEECCCCCcccCcc---------hHHHHHHHhc---CCCCEEEEEccC
Confidence                  12246899999999987543220         1124444444   488888887764

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.09  E-value=0.019  Score=51.17  Aligned_cols=55  Identities=18%  Similarity=0.342  Sum_probs=44.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||.+|.||..++..|...|.  .|.++...                       +.++.+.+++||+||.+.|.|
T Consensus       158 Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg~~  212 (284)
T PRK14179        158 GKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIGRG  212 (284)
T ss_pred             CCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecCcc
Confidence            35899999999999999999998886  77776211                       225667899999999998855

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.09  E-value=0.055  Score=51.04  Aligned_cols=127  Identities=19%  Similarity=0.276  Sum_probs=73.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      ++|.|+|+ |..|.+.+..|..+|.  +|.++|.+........|....  ..+....+..+ .+.+.++|+||.+.|+|.
T Consensus         6 ~~~~v~G~-g~~G~~~a~~l~~~g~--~v~~~d~~~~~~~~~~l~~~~--~gi~~~~g~~~-~~~~~~~d~vv~spgi~~   79 (445)
T PRK04308          6 KKILVAGL-GGTGISMIAYLRKNGA--EVAAYDAELKPERVAQIGKMF--DGLVFYTGRLK-DALDNGFDILALSPGISE   79 (445)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCchhHHHHhhcc--CCcEEEeCCCC-HHHHhCCCEEEECCCCCC
Confidence            58999998 9999999999999997  899999866421112233211  12332333322 234579999999999874


Q ss_pred             CCCCchhhHHHHhHHHH--HHHHHHhhhhCCCcEEEEe--cCCCCCcHHHHHHHHHHhC
Q 025075          101 KPGMTRDDLFNINAGIV--RTLCEGIAKCCPNATVNLI--SNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~--~~i~~~i~~~~p~a~viv~--tNPvd~~~~i~t~~~~~~~  155 (258)
                      ..- ......+.+++++  .+++..+.+. .+..+|-+  ||==.+.+.+++.+++..+
T Consensus        80 ~~p-~~~~a~~~~i~v~~~~~~~~~~~~~-~~~~~I~ITGT~GKTTTt~li~~iL~~~g  136 (445)
T PRK04308         80 RQP-DIEAFKQNGGRVLGDIELLADIVNR-RGDKVIAITGSNGKTTVTSLVGYLCIKCG  136 (445)
T ss_pred             CCH-HHHHHHHcCCcEEEhHHHHHHhhhc-CCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            321 1111223455554  2233232221 12233444  5555566778888887654

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.09  E-value=0.066  Score=44.69  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             HHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHH-HHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchH
Q 025075            6 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLE   83 (258)
Q Consensus         6 ~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~-~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~   83 (258)
                      .+++-+.+.-+-.++.+|.|||+ |.+|.+++. ....+.-..-+..+|+++. -|..  ..+    ..+..   -++++
T Consensus        70 ~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~--~~~----v~V~~---~d~le  139 (211)
T COG2344          70 YLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK--IGD----VPVYD---LDDLE  139 (211)
T ss_pred             HHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc--cCC----eeeec---hHHHH
Confidence            34444555556677889999998 999999975 4444444567889999874 1211  111    12332   24566


Q ss_pred             hhhC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           84 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        84 ~a~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +-++  |.|+.|+|..                .+-.+++++.+.+.+-+++ +++| |+.
T Consensus       140 ~~v~~~dv~iaiLtVP----------------a~~AQ~vad~Lv~aGVkGI-lNFt-Pv~  181 (211)
T COG2344         140 KFVKKNDVEIAILTVP----------------AEHAQEVADRLVKAGVKGI-LNFT-PVR  181 (211)
T ss_pred             HHHHhcCccEEEEEcc----------------HHHHHHHHHHHHHcCCceE-Eecc-ceE
Confidence            6676  8999999962                3345788899998887775 4566 777

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.07  E-value=0.04  Score=49.73  Aligned_cols=92  Identities=22%  Similarity=0.227  Sum_probs=59.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||- |.+|+.++..+..-|.  +|..||+....      .+.    .+.    ..++++.++.||+|++..-  
T Consensus       145 gktvGIiG~-G~IG~~vA~~~~~fgm--~V~~~d~~~~~------~~~----~~~----~~~l~ell~~sDvv~lh~P--  205 (311)
T PRK08410        145 GKKWGIIGL-GTIGKRVAKIAQAFGA--KVVYYSTSGKN------KNE----EYE----RVSLEELLKTSDIISIHAP--  205 (311)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhhcCC--EEEEECCCccc------ccc----Cce----eecHHHHhhcCCEEEEeCC--
Confidence            468999997 9999999998876666  89999974311      011    111    1257889999999999862  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ..+ ++|. ++  |    ++.   +.+..|++++||++=  =+|
T Consensus       206 lt~-~T~~-li--~----~~~---~~~Mk~~a~lIN~aRG~vVD  238 (311)
T PRK08410        206 LNE-KTKN-LI--A----YKE---LKLLKDGAILINVGRGGIVN  238 (311)
T ss_pred             CCc-hhhc-cc--C----HHH---HHhCCCCeEEEECCCccccC
Confidence            211 1111 11  1    222   333458999999873  355

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.00  E-value=0.064  Score=51.07  Aligned_cols=126  Identities=17%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh-HH-HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g-~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..||.|||+ |.+|..+|..|...|.  +|.++|.... .. .. ..|...    .+....+. +. +...++|+||++.
T Consensus        16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~   86 (480)
T PRK01438         16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP   86 (480)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence            458999998 9999999999998887  8999996543 11 11 123222    22222222 11 2356799999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHH--HHHHhhhhCCCcEEEEec--CCCCCcHHHHHHHHHHhC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLIS--NPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~--i~~~i~~~~p~a~viv~t--NPvd~~~~i~t~~~~~~~  155 (258)
                      |++..... .......+++++.+  ++-.+.+...+..+|-+|  |==.+.+.+++.+++..+
T Consensus        87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g  148 (480)
T PRK01438         87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAG  148 (480)
T ss_pred             CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcC
Confidence            88643211 11112334555433  222222111233344454  544456677777776643

>PRK06046 alanine dehydrogenase; Validated

Probab=95.99  E-value=0.034  Score=50.50  Aligned_cols=72  Identities=18%  Similarity=0.266  Sum_probs=48.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...+|+|||+ |..|...+..+....-++++.++|++.++..  +.++.+. ....+..   ..|++++++ +|+|+++.
T Consensus       128 ~~~~vgiiG~-G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~-~~~~v~~---~~~~~~~l~-aDiVv~aT  201 (326)
T PRK06046        128 DSKVVGIIGA-GNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV-VGCDVTV---AEDIEEACD-CDILVTTT  201 (326)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh-cCceEEE---eCCHHHHhh-CCEEEEec
Confidence            3468999997 9999998887765455689999999875322  2223221 1222332   246777786 99999875

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=95.98  E-value=0.09  Score=47.03  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=89.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCCCCCeEEE-EeCCCchHhhhC--CCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRG-FLGQPQLENALT--GMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~~~~~v~~-~~~~~d~~~a~~--~aDiVIi   94 (258)
                      |++.|+|++||+|+++...+..+..-.+|+.+|.-.-.|   ...++.+..-..-++. +.....+.+.++  +.|.|+.
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            589999999999999998777665545788888743222   2233443321111221 111122345556  6899999


Q ss_pred             cCCCCC--CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE-EecCCCC-CcHHHHHHHHHHhCCCCCCcEEEEeeccH
Q 025075           95 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN-LISNPVN-STVPIAAEVFKKAGTYDPKKLLGVTMLDV  170 (258)
Q Consensus        95 ~ag~~~--~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi-v~tNPvd-~~~~i~t~~~~~~~~~~~~kviG~t~lds  170 (258)
                      .|.-.-  +.=..-.++++.|+--...+.+.++++...-.++ |.|.-|= .+.. -...+-+.+.+.|+....-+.-.+
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~-~~~~FtE~tp~~PsSPYSASKAas  159 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGL-DDDAFTETTPYNPSSPYSASKAAS  159 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccC-CCCCcccCCCCCCCCCcchhhhhH
Confidence            764211  0001225678889999999999999987543333 3332110 0000 000111334466666665543333


Q ss_pred             HHHHHHHHHHhCCCC
Q 025075          171 VRANTFVAEVLGLDP  185 (258)
Q Consensus       171 ~R~~~~la~~l~v~~  185 (258)
                      --+-+...+-+|++.
T Consensus       160 D~lVray~~TYglp~  174 (340)
T COG1088         160 DLLVRAYVRTYGLPA  174 (340)
T ss_pred             HHHHHHHHHHcCCce
Confidence            334455556666654

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.98  E-value=0.2  Score=48.04  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=72.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      .||.|+|. |..|.+++..|...|.  +|..+|.+.......+|.....  .+....+..+ .+.+.++|+||.+.|++.
T Consensus         8 ~~i~v~G~-G~sG~s~a~~L~~~G~--~v~~~D~~~~~~~~~~L~~~~~--~~~~~~g~~~-~~~~~~~d~vv~sp~I~~   81 (498)
T PRK02006          8 PMVLVLGL-GESGLAMARWCARHGA--RLRVADTREAPPNLAALRAELP--DAEFVGGPFD-PALLDGVDLVALSPGLSP   81 (498)
T ss_pred             CEEEEEee-cHhHHHHHHHHHHCCC--EEEEEcCCCCchhHHHHHhhcC--CcEEEeCCCc-hhHhcCCCEEEECCCCCC
Confidence            48999998 9999999999999997  8999997653211122433211  1222222223 356789999999988875


Q ss_pred             CCCCchhhH---HHHhHHHH------HHHHHHhhh--hCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075          101 KPGMTRDDL---FNINAGIV------RTLCEGIAK--CCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus       101 ~~g~~r~d~---~~~n~~i~------~~i~~~i~~--~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      ........+   -..|++++      ..+.+.+..  +.+..+-|-=||==.+.+.+++.+++..+
T Consensus        82 ~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         82 LEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             cccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            321111111   12233333      222222211  12222222225665567778888887654

>PRK06932 glycerate dehydrogenase; Provisional

Probab=95.96  E-value=0.035  Score=50.23  Aligned_cols=88  Identities=18%  Similarity=0.254  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..+..-|.  +|..||.....    +. .      .    ...++++.++.||+|++.... 
T Consensus       147 gktvgIiG~-G~IG~~va~~l~~fg~--~V~~~~~~~~~----~~-~------~----~~~~l~ell~~sDiv~l~~Pl-  207 (314)
T PRK06932        147 GSTLGVFGK-GCLGTEVGRLAQALGM--KVLYAEHKGAS----VC-R------E----GYTPFEEVLKQADIVTLHCPL-  207 (314)
T ss_pred             CCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCccc----cc-c------c----ccCCHHHHHHhCCEEEEcCCC-
Confidence            368999998 9999999998887776  88888863210    00 0      0    013578999999999998632 


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       .+. ++. ++  |    ++.   +.+..|++++||++=
T Consensus       208 -t~~-T~~-li--~----~~~---l~~mk~ga~lIN~aR  234 (314)
T PRK06932        208 -TET-TQN-LI--N----AET---LALMKPTAFLINTGR  234 (314)
T ss_pred             -ChH-Hhc-cc--C----HHH---HHhCCCCeEEEECCC
Confidence             111 110 11  1    222   333358899999873

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.93  E-value=0.051  Score=50.33  Aligned_cols=33  Identities=30%  Similarity=0.582  Sum_probs=30.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      .||.|+|+ |.+|+.++..|+..|. ++|.|+|.+
T Consensus       136 ~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d  168 (376)
T PRK08762        136 ARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD  168 (376)
T ss_pred             CcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence            48999998 9999999999999986 699999987

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.92  E-value=0.028  Score=51.00  Aligned_cols=65  Identities=15%  Similarity=0.168  Sum_probs=46.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +.++|+|||- |.+|..+|..|...|+  +|+.+|....   ..+.....   ....    .++.++++.||+|+++.
T Consensus        15 kgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~~---s~~~A~~~---G~~v----~sl~Eaak~ADVV~llL   79 (335)
T PRK13403         15 QGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPGK---SFEVAKAD---GFEV----MSVSEAVRTAQVVQMLL   79 (335)
T ss_pred             CcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcch---hhHHHHHc---CCEE----CCHHHHHhcCCEEEEeC
Confidence            3458999998 9999999999999998  8999985421   11111111   1111    25679999999999986

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.92  E-value=0.017  Score=48.80  Aligned_cols=31  Identities=23%  Similarity=0.367  Sum_probs=26.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD   53 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D   53 (258)
                      |||+|||++|.+|+.++..+.+.|+  +|.+-|
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~--~v~~~~   31 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGL--GVYIKK   31 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCC--EEEECC
Confidence            6999999999999999999998887  555433

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.92  E-value=0.043  Score=50.99  Aligned_cols=73  Identities=15%  Similarity=0.180  Sum_probs=49.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChh--HHHHHhcCCCCC-eEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ...++|||+ |..+...+..+.. .+.+++|.+||+++++.  .+.++.+..... .+..   ..+.++++++||+|+.+
T Consensus       155 a~~l~iiG~-G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~---~~s~~eav~~ADIVvta  230 (379)
T PRK06199        155 SKVVGLLGP-GVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV---VDSIEEVVRGSDIVTYC  230 (379)
T ss_pred             CCEEEEECC-cHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE---eCCHHHHHcCCCEEEEc
Confidence            458999997 9999888777665 44468999999988633  233444321111 2332   35678999999998876


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus       231 T  231 (379)
T PRK06199        231 N  231 (379)
T ss_pred             c
Confidence            4

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=95.91  E-value=0.03  Score=46.50  Aligned_cols=116  Identities=20%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCC----eEEEEeCCCchHhhhCCCCEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA----VVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~----~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      .+++|..-|+||+|.+|.-+...+.+.+.++.|+++-+.+.       -+.....    ...++.--.++.+++++-|+.
T Consensus        15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~-------~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~   87 (238)
T KOG4039|consen   15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRREL-------PDPATDKVVAQVEVDFSKLSQLATNEQGPDVL   87 (238)
T ss_pred             hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccC-------CCccccceeeeEEechHHHHHHHhhhcCCceE
Confidence            45677899999999999999999999999999999977532       1111111    111111123566788999999


Q ss_pred             EEcCCCCC-CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           93 IIPAGVPR-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        93 Ii~ag~~~-~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +++-|.-| +.|-+  .+..-.-+.+.+.++..++.+-+.++++.|--.|
T Consensus        88 FcaLgTTRgkaGad--gfykvDhDyvl~~A~~AKe~Gck~fvLvSS~GAd  135 (238)
T KOG4039|consen   88 FCALGTTRGKAGAD--GFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAGAD  135 (238)
T ss_pred             EEeecccccccccC--ceEeechHHHHHHHHHHHhCCCeEEEEEeccCCC
Confidence            99876543 33321  1222334556667777776666667776654444

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=95.91  E-value=0.052  Score=48.77  Aligned_cols=75  Identities=24%  Similarity=0.208  Sum_probs=51.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE-eCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+-||+|||+ |.+|..-+......|  .+|.+.|.+..+-..+|-.   +..++... +...+++++++.+|+||-+.-
T Consensus       167 ~~~kv~iiGG-GvvgtnaAkiA~glg--A~Vtild~n~~rl~~ldd~---f~~rv~~~~st~~~iee~v~~aDlvIgaVL  240 (371)
T COG0686         167 LPAKVVVLGG-GVVGTNAAKIAIGLG--ADVTILDLNIDRLRQLDDL---FGGRVHTLYSTPSNIEEAVKKADLVIGAVL  240 (371)
T ss_pred             CCccEEEECC-ccccchHHHHHhccC--CeeEEEecCHHHHhhhhHh---hCceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence            4469999999 999999887666544  3899999986543333322   22244432 333478999999999998764


Q ss_pred             CC
Q 025075           98 VP   99 (258)
Q Consensus        98 ~~   99 (258)
                      +|
T Consensus       241 Ip  242 (371)
T COG0686         241 IP  242 (371)
T ss_pred             ec
Confidence            43

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	258
1sev_A	362	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-119
1smk_A	326	Mature And Translocatable Forms Of Glyoxysomal Mala		1e-114
1mld_A	314	Refined Structure Of Mitochondrial Malate Dehydroge		1e-74
2dfd_A	342	Crystal Structure Of Human Malate Dehydrogenase Typ		2e-74
2pwz_A	312	Crystal Structure Of The Apo Form Of E.Coli Malate		2e-66
1emd_A	312	Crystal Structure Of A Ternary Complex Of Escherich		2e-66
1ib6_A	312	Crystal Structure Of R153c E. Coli Malate Dehydroge		3e-65
4e0b_A	313	2.17 Angstrom Resolution Crystal Structure Of Malat		2e-63
3p7m_A	321	Structure Of Putative Lactate Dehydrogenase From Fr		1e-17
3gvh_A	324	Crystal Structure Of LactateMALATE DEHYDROGENASE FR		4e-15
2hjr_A	328	Crystal Structure Of Cryptosporidium Parvum Malate		7e-15
3tl2_A	315	Crystal Structure Of Bacillus Anthracis Str. Ames M		1e-14
1gv1_A	310	Structural Basis For Thermophilic Protein Stability		8e-13
1guz_A	310	Structural Basis For Thermophilic Protein Stability		1e-12
1pze_A	331	T.gondii Ldh1 Apo Form Length = 331		2e-12
3om9_A	329	T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex		3e-12
1pzg_A	331	T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.		3e-12
1uxh_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-12
1uxi_A	309	Large Improvement In The Thermal Stability Of A Tet		4e-12
1guy_A	309	Structural Basis For Thermophilic Protein Stability		4e-12
1gv0_A	310	Structural Basis For Thermophilic Protein Stability		8e-12
1ur5_A	309	Stabilization Of A Tetrameric Malate Dehydrogenase		9e-12
1a5z_A	319	Lactate Dehydrogenase From Thermotoga Maritima (tml		1e-11
1y6j_A	318	L-Lactate Dehydrogenase From Clostridium Thermocell		1e-10
2ewd_A	317	Crystal Structure Of The Lactate Dehydrogenase From		1e-10
1hyg_A	313	Crystal Structure Of Mj0490 Gene Product, The Famil		2e-10
2fm3_A	321	Crystal Structure Of The Lactate Dehydrogenase From		2e-10
3nep_X	314	1.55a Resolution Structure Of Malate Dehydrogenase		2e-10
3fi9_A	343	Crystal Structure Of Malate Dehydrogenase From Porp		4e-10
2d4a_A	308	Structure Of The Malate Dehydrogenase From Aeropyru		5e-10
3czm_A	326	T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex		6e-10
1sov_A	328	Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Ap		6e-10
2x0i_A	294	2.9 A Resolution Structure Of Malate Dehydrogenase		2e-08
1t24_A	322	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-08
1ceq_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		2e-08
1u4o_A	321	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-08
1xiv_A	323	Plasmodium Falciparum Lactate Dehydrogenase Complex		2e-08
1t2e_A	322	Plasmodium Falciparum Lactate Dehydrogenase S245a,		3e-08
2a92_A	321	Crystal Structure Of Lactate Dehydrogenase From Pla		3e-08
4h7p_A	345	Crystal Structure Of A Putative Cytosolic Malate De		1e-07
1cet_A	316	Chloroquine Binds In The Cofactor Binding Site Of P		4e-07
2j5k_A	304	2.0 A Resolution Structure Of The Wild Type Malate		5e-07
2hlp_A	303	Crystal Structure Of The E267r Mutant Of A Halophil		5e-07
1hlp_A	303	Structural Features Stabilizing Halophilic Malate D		5e-07
2x0r_A	304	R207s,R292s Mutant Of Malate Dehydrogenase From The		1e-06
1o6z_A	303	1.95 A Resolution Structure Of (r207s,r292s) Mutant		1e-06
1oc4_A	322	Lactate Dehydrogenase From Plasmodium Berghei Lengt		2e-06
2v6b_A	304	Crystal Structure Of Lactate Dehydrogenase From Dei		8e-06
1bmd_A	327	Determinants Of Protein Thermostability Observed In		9e-06
1bdm_A	327	The Structure At 1.8 Angstroms Resolution Of A Sing		1e-05
1iz9_A	327	Crystal Structure Of Malate Dehydrogenase From Ther		1e-05
1lld_A	319	Molecular Basis Of Allosteric Activation Of Bacteri		2e-05
1ldn_A	316	Structure Of A Ternary Complex Of An Allosteric Lac		2e-05
1ldb_A	317	Structure Determination And Refinement Of Bacillus		2e-05
1i10_A	331	Human Muscle L-Lactate Dehydrogenase M Chain, Terna		2e-05
4ajp_A	337	Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-		2e-05
2zqy_A	326	T-State Structure Of Allosteric L-Lactate Dehydroge		3e-05
3vku_A	326	Penta Mutant Of Lactobacillus Casei Lactate Dehydro		4e-05
1wze_A	327	Structural Basis For Alteration Of Cofactor Specifi		4e-05
2e37_A	310	Structure Of Tt0471 Protein From Thermus Thermophil		6e-05
4a73_A	310	Single Point Mutant Of Thermus Thermophilus Lactate		6e-05
2v6m_A	310	Crystal Structure Of Lactate Dehydrogenase From The		7e-05
1llc_A	325	Structure Determination Of The Allosteric L-Lactate		7e-05
3pqd_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		1e-04
2xxb_A	310	Penta-Mutant Of Thermus Thermophilus Lactate Dehydr		2e-04
3pqe_A	326	Crystal Structure Of L-Lactate Dehydrogenase From B		2e-04
9ldt_A	332	Design And Synthesis Of New Enzymes Based On The La		2e-04
3h3f_A	331	Rabbit Muscle L-Lactate Dehydrogenase In Complex Wi		4e-04
4aj1_A	331	Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Be		5e-04
4aj4_A	332	Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Be		6e-04
1civ_A	385	Chloroplast Nadp-Dependent Malate Dehydrogenase Fro		7e-04
6ldh_A	330	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-04
1ldm_A	329	Refined Crystal Structure Of Dogfish M4 Apo-Lactate		7e-04
2ldx_A	331	Characterization Of The Antigenic Sites On The Refi		8e-04

>pdb|1SEV|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 362

Iteration: 1
 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/247 (85%), Positives = 219/247 (88%)
Query: 1   MEENSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV 60
           MEE+S LR+A CRAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGV
Sbjct: 25  MEESSALRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGV 84
Query: 61  TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL 120
           TADISHMDTGAVVRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TL
Sbjct: 85  TADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTL 144
Query: 121 CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEX 180
           CEGIAKCCP A VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE 
Sbjct: 145 CEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEV 204
Query: 181 XXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
                          HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGA
Sbjct: 205 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGA 264
Query: 241 GSATLSM 247
           GSATLSM
Sbjct: 265 GSATLSM 271

>pdb|1SMK|A Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures Length = 326

Iteration: 1
 Score =  406 bits (1043), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/235 (86%), Positives = 209/235 (88%)
Query: 13  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 72
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60
Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120
Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXX 192
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAE             
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180
Query: 193 XXXHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
              HAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase From Porcine Heart And The Consensus Structure For Dicarboxylic Acid Oxidoreductases Length = 314

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 167/226 (73%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121
Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE                HAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181
Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2 Length = 342

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 138/226 (61%), Positives = 167/226 (73%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 30  KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQ 89
Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP A + +I+NPVN
Sbjct: 90  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVN 149
Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRANTFVAE                HAG TI
Sbjct: 150 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTI 209
Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 210 IPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSM 255

>pdb|2PWZ|A Chain A, Crystal Structure Of The Apo Form Of E.Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 160/229 (69%), Gaps = 4/229 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1EMD|A Chain A, Crystal Structure Of A Ternary Complex Of Escherichia Coli Malate Dehydrogenase, Citrate And Nad At 1.9 Angstroms Resolution Length = 312

Iteration: 1
 Score =  248 bits (634), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/229 (58%), Positives = 160/229 (69%), Gaps = 4/229 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|1IB6|A Chain A, Crystal Structure Of R153c E. Coli Malate Dehydrogenase Length = 312

Iteration: 1
 Score =  244 bits (623), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 134/229 (58%), Positives = 159/229 (69%), Gaps = 4/229 (1%)
Query: 21  FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG 78
            KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G
Sbjct: 1   MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG 60
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
           +     AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+N
Sbjct: 61  EDATP-ALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           PVN+TV IAAEV KKAG YD  KL GVT LD++ +NTFVAE                H+G
Sbjct: 120 PVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIICSNTFVAELKGKQPGEVEVPVIGGHSG 179
Query: 199 VTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           VTILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 180 VTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate Dehydrogenase From Vibrio Vulnificus Cmcp6 Length = 313

Iteration: 1
 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 133/227 (58%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GAAGGIGQ LA+L+K   P  S L LYD+   TPGV AD+SH+ T   ++G+ G+
Sbjct: 5   KVAVIGAAGGIGQALALLLKNRLPAGSDLALYDIAPVTPGVAADLSHIPTHVSIKGYAGE 64
Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPG  R DLFN+NAGIV++L E IA  CPNA + +I+NP
Sbjct: 65  DPTP-ALEGADVVLISAGVARKPGXDRADLFNVNAGIVKSLAERIAVVCPNACIGIITNP 123
Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGV 199
           VN+TVPIAAEV KKAG YD +KL GVT LDV+R+ TFVAE                H+GV
Sbjct: 124 VNTTVPIAAEVLKKAGVYDKRKLFGVTTLDVIRSETFVAELKGQDPGEVRVPVIGGHSGV 183
Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 246
           TILPLLSQV+    F+ EE   LT RIQN GTEVVEAKAG GSATLS
Sbjct: 184 TILPLLSQVE-GVEFSDEEIAALTKRIQNAGTEVVEAKAGGGSATLS 229

>pdb|3P7M|A Chain A, Structure Of Putative Lactate Dehydrogenase From Francisella Tularensis Subsp. Tularensis Schu S4 Length = 321

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VRG 75
           K+ ++GA G IG  LA L  I  L  V+ L+D+         +  + T  +      VRG
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGXPNGKALDLLQTCPIEGVDFKVRG 64
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                 LEN+    D+VI+ AGVPRKPG +RDDL  IN  + +T+ EGI   CPNA V  
Sbjct: 65  TNDYKDLENS----DVVIVTAGVPRKPGXSRDDLLGINIKVXQTVGEGIKHNCPNAFVIC 120
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           I+NP++  V     + K +G  D K +    +LD  R  TF+A+                
Sbjct: 121 ITNPLDIXV---NXLQKFSGVPDNKIVGXAGVLDSARFRTFLADELNVSVQQVQAYVXGG 177
Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVV 234
           H G T +PL          L Q+       QE  + + +R ++GG E+V
Sbjct: 178 H-GDTXVPLTKXSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIV 225

>pdb|3GVH|A Chain A, Crystal Structure Of LactateMALATE DEHYDROGENASE FROM Brucella Melitensis Length = 324

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 111/229 (48%), Gaps = 26/229 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP-GVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  LA L  +  L  V+ L+D+   TP G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63
Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           +NP+++ V       +K       K++G+  +LD  R   F++E                
Sbjct: 124 TNPLDAMV----WALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179
Query: 196 HAGVTI----------LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 234
           H    +          +PL   VK   + +Q++ + +  R ++GG E+V
Sbjct: 180 HGDSMVPLARYSTVAGIPLPDLVKMGWT-SQDKLDKIIQRTRDGGAEIV 227

>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate Dehydrogenase Length = 328

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 89/158 (56%), Gaps = 17/158 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH----MDTGAVVRG 75
           K++I+GA G IG  +A+L+    L  V +++D++     G   D++H    + + A + G
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDV-YMFDIIEGVPQGKALDLNHCMALIGSPAKIFG 73
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                 L+N+    D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  
Sbjct: 74  ENNYEYLQNS----DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVIC 129
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR 172
           I+NP+++ V      FK+       K+ G++ +LD  R
Sbjct: 130 ITNPLDAMV----YYFKEKSGIPANKVCGMSGVLDSAR 163

>pdb|3TL2|A Chain A, Crystal Structure Of Bacillus Anthracis Str. Ames Malate Dehydrogenase In Closed Conformation Length = 315

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 86/160 (53%), Gaps = 12/160 (7%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + +++NPV++   +   
Sbjct: 80  DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDA---MTYS 136
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ- 207
           VFK+AG +  ++++G + +LD  R  TF+A+                H G  ++PL+   
Sbjct: 137 VFKEAG-FPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYS 194
Query: 208 ----VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
               +       +E  E +  R + GG E+V    G GSA
Sbjct: 195 YAGGIPLETLIPKERLEAIVERTRKGGGEIV-GLLGNGSA 233

>pdb|1GV1|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 106/230 (46%), Gaps = 28/230 (12%)
Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP 80
            K+ ++GA G +G   A  +    L   L L DVV        +   +TG V  G     
Sbjct: 1   MKITVIGA-GNVGATTAFRIADKKLARELVLLDVVEGIPQGKGLDMYETGPV--GLF--- 54
Query: 81  QLENALTGM---------DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
             +  +TG          D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N 
Sbjct: 55  --DTKITGSNDYADTADSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNP 112
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
            + ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A           
Sbjct: 113 IIIVVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDIN 167
Query: 190 XXXXXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVE 235
                 H  A V ++   +    P S     E  + L  R +NGG E+VE
Sbjct: 168 ACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1GUZ|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 22/227 (9%)
Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VR 74
            K+ ++GA G +G   A  +    L   L L DVV        +   ++G V      V 
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 75  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           G        N+    D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + 
Sbjct: 60  GSNDYADTANS----DIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIII 115
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXX 192
           ++SNP++    +A   + ++G   PK +++G+  +LD  R  +F+A              
Sbjct: 116 VVSNPLDIMTHVA---WVRSGL--PKERVIGMAGVLDAARFRSFIAMELGVSMQDINACV 170
Query: 193 XXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVVE 235
              H  A V ++   +    P S     E  + L  R +NGG E+VE
Sbjct: 171 LGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVE 217

>pdb|1PZE|A Chain A, T.gondii Ldh1 Apo Form Length = 331

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|3OM9|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh1) In Complex With Nad And Oxq Length = 329

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 66
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 67  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 123
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 124 TFIIVVTNPLDCMVKVMCE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 179
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 180 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 234

>pdb|1PZG|A Chain A, T.Gondii Ldh1 Complexed With Apad And Sulfate At 1.6 Angstroms Length = 331

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/236 (28%), Positives = 107/236 (45%), Gaps = 32/236 (13%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHM----DTGAVVRG 75
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH+    DT   VR 
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSHVTSVVDTNVSVRA 68
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 69  ---EYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125
Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXX 189
             + +++NP++  V +  E    A       + G+  MLD  R   +VA+          
Sbjct: 126 TFIIVVTNPLDCMVKVMXE----ASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181
Query: 190 XXXXXXHAGVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
                 H G  ++PL+  +     P   F      T+++ E +    +  G E+V 
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR 236

>pdb|1UXH|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVQDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 234
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1UXI|A Chain A, Large Improvement In The Thermal Stability Of A Tetrameric Malate Dehydrogenase By Single Point Mutations At The Dimer-Dimer Interface Length = 309

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 234
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1GUY|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 309

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLG-VTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFST 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 234
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1GV0|A Chain A, Structural Basis For Thermophilic Protein Stability: Structures Of Thermophilic And Mesophilic Malate Dehydrogenases Length = 310

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 105/226 (46%), Gaps = 22/226 (9%)
Query: 21  FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV------VR 74
            K+ ++GA G +G   A  +    L   L L DVV        +   ++G V      V 
Sbjct: 1   MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT 59
Query: 75  GFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           G        N+    D+V+I AG+PRKPGMTR+DL ++NAGIVR +   I +   N  + 
Sbjct: 60  GSNDYADTANS----DIVVITAGLPRKPGMTREDLLSMNAGIVREVTGRIMEHSKNPIIV 115
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXX 192
           ++SNP++    +A   ++K+G   PK +++G+  +LD  R  +F+A              
Sbjct: 116 VVSNPLDIMTHVA---WQKSGL--PKERVIGMAGVLDSARFRSFIAMELGVSMQDVTACV 170
Query: 193 XXXH--AGVTILPLLSQVKPPCS--FTQEETEYLTNRIQNGGTEVV 234
              H  A V ++   +    P +   + E    L  R + GG E+V
Sbjct: 171 LGGHGDAMVPVVKYTTVAGIPVADLISAERIAELVERTRTGGAEIV 216

>pdb|1UR5|A Chain A, Stabilization Of A Tetrameric Malate Dehydrogenase By Introduction Of A Disulfide Bridge At The DimerDIMER Interface Length = 309

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 43/150 (28%), Positives = 72/150 (48%), Gaps = 9/150 (6%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+++   +AAE
Sbjct: 72  DVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAE 131
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTI-LPLLSQ 207
           V      +  ++++G   +LD  R  TF+A                 H    + LP  S 
Sbjct: 132 V----SGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGGHGDEMVPLPRFSC 187
Query: 208 VK--PPCSFTQ-EETEYLTNRIQNGGTEVV 234
           +   P   F   +    +  R + GG E+V
Sbjct: 188 ISGIPVSEFIAPDRLAQIVERTRKGGGEIV 217

>pdb|1A5Z|A Chain A, Lactate Dehydrogenase From Thermotoga Maritima (tmldh) Length = 319

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+    
Sbjct: 65  LKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD---- 120
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +    F K    DP+K+ G  T+LD  R  T +A+
Sbjct: 121 VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQ 155

>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum Cth-1135 Length = 318

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 110/250 (44%), Gaps = 36/250 (14%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FL 77
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H        G  F+
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH--------GLPFM 59
Query: 78  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
           GQ  L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  +
Sbjct: 60  GQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVI 119
Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXX 192
            ++SNPV+    I   + +K       K++G  T+LD +R    ++E             
Sbjct: 120 LVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYI 175
Query: 193 XXXHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
              H G + LPL S               P C+FT+E+ + +   ++  G  +++ K GA
Sbjct: 176 IGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK-GA 233
Query: 241 GSATLSMRLN 250
               +++ +N
Sbjct: 234 TYYGIAVSIN 243

>pdb|2EWD|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor Analog (3-Acetylpyridine Adenine Dinucleotide). Length = 317

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/162 (31%), Positives = 85/162 (52%), Gaps = 11/162 (6%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISH-MDTGAVVRGFLG 78
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TDDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAE 179
           P++    +    F+K       K+ G+  +LD  R  TF+A+
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQ 160

>pdb|1HYG|A Chain A, Crystal Structure Of Mj0490 Gene Product, The Family Of LactateMALATE DEHYDROGENASE Length = 313

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 20/233 (8%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHL----YDVVNTPGVTADISHMDTGAVVRGFL 77
           KV I+GA+G +G   A+L+   P +  L L    + +    G+  DI     G      +
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61
Query: 78  GQPQLEN--ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                EN   +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C +  + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFV 120
Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXX 194
           I+NPV+  +   A V  K   ++  ++ G+ T LD +R    +A+               
Sbjct: 121 ITNPVD-VMTYKALVDSK---FERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTRIIG 176
Query: 195 XHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
            H G +++PLLS        ++    F +   + +   ++  G +++  K G+
Sbjct: 177 EH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGS 228

>pdb|2FM3|A Chain A, Crystal Structure Of The Lactate Dehydrogenase From Cryptosporidium Parvum Complexed With Substrate (Pyruvic Acid) And Cofactor (B- Nicotinamide Adenine Dinucleotide) Length = 321

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-MDTGAVVRGFLG 78
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H M         +G
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITHSMVMFGSTSKVIG 63
Query: 79  QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 138
                + ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I+N
Sbjct: 64  TNDYAD-ISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN 122
Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHA 197
           P++    +    F+K       K+ G+  +LD  R  TF+A+                H 
Sbjct: 123 PLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGGH- 177
Query: 198 GVTILPLLSQVK----PPCSF------TQEETEYLTNRIQNGGTEVVE 235
           G  ++P  S V     P  SF      TQE+ + +    +    EV +
Sbjct: 178 GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVAD 225

>pdb|3NEP|X Chain X, 1.55a Resolution Structure Of Malate Dehydrogenase From Salinibacter Ruber Length = 314

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 11/152 (7%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ +++NP++    +A E
Sbjct: 71  DVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYE 130
Query: 150 VFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPL---- 204
               A  +   +++G+  +LD  R  +F+AE                H G T++PL    
Sbjct: 131 ----ASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGGH-GDTMVPLPRYT 185
Query: 205 -LSQVKPPCSFTQEETEYLTNRIQNGGTEVVE 235
            +  +  P        E +  R +  G E+V+
Sbjct: 186 TVGGIPVPQLIDDARIEEIVERTKGAGGEIVD 217

>pdb|3FI9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Porphyromonas Gingivalis Length = 343

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/130 (36%), Positives = 61/130 (46%), Gaps = 15/130 (11%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD--VVNTPGVTADISHMDTGAVVRGFLG- 78
           K+ I+GAAG IG  +A    +  L   L LYD   V   GV  +I H        GF G 
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHC-------GFEGL 62
Query: 79  ----QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-V 133
                  ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V
Sbjct: 63  NLTFTSDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHV 122
Query: 134 NLISNPVNST 143
            +I NP + T
Sbjct: 123 IIIFNPADIT 132

>pdb|2D4A|A Chain A, Structure Of The Malate Dehydrogenase From Aeropyrum Pernix Length = 308

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 105/223 (47%), Gaps = 15/223 (6%)
Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM--DTGAVVRGFLGQ 79
           + ILGA G +G   A+++ +     +L +      P G   D++H   + G  +R   G 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIR-ISGS 59
Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
              E+ + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +NP
Sbjct: 60  NSYED-MRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNP 118
Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFVAEXXXXXXXXXXXXXXXXHAG 198
           V++   +   ++KK G +  ++++G + +LD  R   ++++                H  
Sbjct: 119 VDAMTYV---MYKKTG-FPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMHGQ 174
Query: 199 VTI-LPLLSQV-KPPCS--FTQEETEYLTNRIQNGGTEVVEAK 237
               +P LS V   P     ++EE E + +   N G ++ E +
Sbjct: 175 KMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR 217

>pdb|3CZM|A Chain A, T. Gondii Bradyzoite-Specific Ldh (Ldh2) In Complex With Nad And Oxq Length = 326

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 26/240 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 194 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241

>pdb|1SOV|A Chain A, Toxoplasma Gondii Bradyzoite-specific Ldh (ldh2) Apo Form Length = 328

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 65/240 (27%), Positives = 104/240 (43%), Gaps = 26/240 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +  L  +  L  V+ L+DVV     G   D S   + A     +  
Sbjct: 10  KIAMIGS-GMIGGTMGYLCVLRELADVV-LFDVVTGMPEGKALDDSQATSIADTNVSVTS 67
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 + G D+VII AG+ + PG      +R+DL   NA I+R + +G+ K CP A V 
Sbjct: 68  ANQYEKIAGSDVVIITAGLTKVPGKSDKEWSRNDLLPFNAKIIREVAQGVKKYCPLAFVI 127
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXX 193
           +++NP++  V    + F +A       + G+  +LD  R   F+A+              
Sbjct: 128 VVTNPLDCMV----KCFHEASGLPKNMVCGMANVLDSARFRRFIADQLEISPRDIQATVI 183
Query: 194 XXHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
             H G  +LPL          L +       T+ +   +  R +  G E+V    G GSA
Sbjct: 184 GTH-GDHMLPLARYVTVNGFPLREFIKKGKMTEAKLAEIVERTKKAGGEIVRL-LGQGSA 241

>pdb|2X0I|A Chain A, 2.9 A Resolution Structure Of Malate Dehydrogenase From Archaeoglobus Fulgidus In Complex With Nadh Length = 294

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 11/132 (8%)
Query: 29  AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL-----E 83
           AG +G   A    +N  V  + L D+     V      MD      G    P++      
Sbjct: 8   AGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG---EAMDLAHAAAGIDKYPKIVGGADY 64
Query: 84  NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST 143
           + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP++  
Sbjct: 65  SLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVM 124
Query: 144 VPIAAEVFKKAG 155
             I   ++K++G
Sbjct: 125 TYI---MWKESG 133

>pdb|1T24|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With Nad+ And 4- Hydroxy-1,2,5-Oxadiazole-3-Carboxylic Acid Length = 322

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|1CEQ|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase Length = 316

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|1U4O|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2,6- Naphthalenedicarboxylic Acid Length = 321

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 164

>pdb|1XIV|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase Complexed With 2-({4- Chloro-[hydroxy(Methoxy)methyl]cyclohexyl}amino)ethane- 1,1,2-Triol Length = 323

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 5   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 62
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 63  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 122
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 123 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 164

>pdb|1T2E|A Chain A, Plasmodium Falciparum Lactate Dehydrogenase S245a, A327p Mutant Complexed With Nadh And Oxamate Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|2A92|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Plasmodium Vivax: Complex With Nadh Length = 321

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 101/229 (44%), Gaps = 26/229 (11%)
Query: 25  ILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQPQL 82
           +L  +G IG  +A L+    L  V+ ++DVV N P G   D SH +  A     +     
Sbjct: 7   VLVGSGMIGGVMATLIVQKNLGDVV-MFDVVKNMPQGKALDTSHSNVMAYSNCKVTGSNS 65
Query: 83  ENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
            + L G D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + +++
Sbjct: 66  YDDLKGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNLCPNAFIIVVT 125
Query: 138 NPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXX 195
           NPV+  V +   +F+ +G   PK K++G+  +LD  R   ++++                
Sbjct: 126 NPVDVMVQL---LFEHSGV--PKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNALIVGA 180
Query: 196 HAGVTIL----------PLLSQVKPPCSFTQEETEYLTNRIQNGGTEVV 234
           H    +L          PL   +      T EE E + +R  N   E+V
Sbjct: 181 HGNKMVLLKRYITVGGIPLQEFINNK-KITDEEVEGIFDRTVNTALEIV 228

>pdb|4H7P|A Chain A, Crystal Structure Of A Putative Cytosolic Malate Dehydrogenase From Leishmania Major Friedlin Length = 345

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 82/190 (43%), Gaps = 33/190 (17%)
Query: 9   QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD 68
           +A+ +  G  +  KVA+ GAAG IG  L  L+    L+           P    ++  +D
Sbjct: 13  EAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLG----------PTTPVELRLLD 62
Query: 69  TGAVVRGFLG-QPQLEN-----------------ALTGMDLVIIPAGVPRKPGMTRDDLF 110
               ++   G + +LE+                 A  G+ + I+    PRK GM R DL 
Sbjct: 63  IEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAIMCGAFPRKAGMERKDLL 122
Query: 111 NINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGVTML 168
            +NA I +   E IA     +  V ++ NP N+   I   + K A G  +P+ +  +T L
Sbjct: 123 EMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALI---LLKSAQGKLNPRHVTAMTRL 179
Query: 169 DVVRANTFVA 178
           D  RA + +A
Sbjct: 180 DHNRALSLLA 189

>pdb|1CET|A Chain A, Chloroquine Binds In The Cofactor Binding Site Of Plasmodium Falciparum Lactate Dehydrogenase. Length = 316

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L G D+VI+ AG  + PG       R DL  +N  I+  +   I K CPNA + 
Sbjct: 64  SNTYDDLAGSDVVIVTAGFTKAPGKSDKEWNRLDLLPLNNKIMIEIGGHIKKNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIIGLGGVLDTSRLKYYISQ 165

>pdb|2J5K|A Chain A, 2.0 A Resolution Structure Of The Wild Type Malate Dehydrogenase From Haloarcula Marismortui (radiation Damage Series) Length = 304

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 210
Query: 229 GGTEVVEAK 237
              +V+E K
Sbjct: 211 SAMDVIERK 219

>pdb|2HLP|A Chain A, Crystal Structure Of The E267r Mutant Of A Halophilic Malate Dehydrogenase In The Apo Form Length = 303

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAK 237
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|1HLP|A Chain A, Structural Features Stabilizing Halophilic Malate Dehydrogenase From An Archaebacterium Length = 303

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 83/189 (43%), Gaps = 17/189 (8%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V+   +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVRVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAK 237
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|2X0R|A Chain A, R207s,R292s Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (Holo Form) Length = 304

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 41  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 95
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 96  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 151
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 152 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 210
Query: 229 GGTEVVEAK 237
              +V+E K
Sbjct: 211 SAMDVIERK 219

>pdb|1O6Z|A Chain A, 1.95 A Resolution Structure Of (r207s,r292s) Mutant Of Malate Dehydrogenase From The Halophilic Archaeon Haloarcula Marismortui (holo Form) Length = 303

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 17/189 (8%)
Query: 56  NTPGVTADISH---MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI 112
           +T G  AD +H    D+   VR    Q   E+   G D+V+I AG+PR+PG TR DL   
Sbjct: 40  DTVGQAADTNHGIAYDSNTRVR----QGGYEDT-AGSDVVVITAGIPRQPGQTRIDLAGD 94
Query: 113 NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVV 171
           NA I+  +   + +   +      SNPV+    +      +AG    ++++G    LD  
Sbjct: 95  NAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSA 150
Query: 172 RANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQVKPPCS---FTQEETEYLTNRIQN 228
           R    ++E                H G   +P+ S+V    +   F+ +E E L   +Q 
Sbjct: 151 RFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQE 209
Query: 229 GGTEVVEAK 237
              +V+E K
Sbjct: 210 SAMDVIERK 218

>pdb|1OC4|A Chain A, Lactate Dehydrogenase From Plasmodium Berghei Length = 322

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/167 (29%), Positives = 85/167 (50%), Gaps = 16/167 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ ++D+V N P G   D SH +  A     +  
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-MFDIVKNMPHGKALDTSHTNVMAYSNCKVSG 63
Query: 80  PQLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
               + L   D+VI+ AG  + PG       RDDL  +N  I+  +   I   CPNA + 
Sbjct: 64  SNTYDDLKDADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKNNCPNAFII 123
Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAE 179
           +++NPV+  V +   + + +G   PK K++G+  +LD  R   ++++
Sbjct: 124 VVTNPVDVMVQL---LHQHSGV--PKNKIVGLGGVLDTSRLKYYISQ 165

>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Deinococcus Radiodurans (Apo Form) Length = 304

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 83  ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 142
            + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + + SNPV+ 
Sbjct: 62  HSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDL 121
Query: 143 TVPIAAEV 150
              +A ++
Sbjct: 122 LTDLATQL 129

>pdb|1BMD|A Chain A, Determinants Of Protein Thermostability Observed In The 1.9 Angstroms Crystal Structure Of Malate Dehydrogenase From The Thermophilic Bacterium Thermus Flavus Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 129
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 130 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1BDM|A Chain A, The Structure At 1.8 Angstroms Resolution Of A Single Site Mutant (T189i) Of Malate Dehydrogenase From Thermus Flavus With Increased Enzymatic Activity Length = 327

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 129
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPDVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 130 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1IZ9|A Chain A, Crystal Structure Of Malate Dehydrogenase From Thermus Thermophilus Hb8 Length = 327

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 72/170 (42%), Gaps = 18/170 (10%)
Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTG 70
           +VA+ GAAG IG  L        ML K  P+  +L L ++        GV  ++      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPV--ILQLLEIPQAMKALEGVVMELEDC-AF 62
Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P 129
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122
Query: 130 NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
           +  V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 123 DVKVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|1LLD|A Chain A, Molecular Basis Of Allosteric Activation Of Bacterial L-Lactate Dehydrogenase Length = 319

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 74/164 (45%), Gaps = 15/164 (9%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--- 78
           K+A++GA G +G  LA       +   + L D+     V A++  M  G+     +    
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKE-RVEAEVLDMQHGSSFYPTVSIDG 66
Query: 79  --QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
              P++       D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI
Sbjct: 67  SDDPEI---CRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLI 123
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +NPV+    IA  V +K       ++ G  T LD  R    +A+
Sbjct: 124 TNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQ 163

>pdb|1LDN|A Chain A, Structure Of A Ternary Complex Of An Allosteric Lactate Dehydrogenase From Bacillus Stearothermophilus At 2.5 Angstroms Resolution Length = 316

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 207
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 208 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 249
                    V+      Q++ E +   +++   +++E K GA    ++M L
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGL 241

>pdb|1LDB|A Chain A, Structure Determination And Refinement Of Bacillus Stearothermophilus Lactate Dehydrogenase Length = 317

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 72/171 (42%), Gaps = 16/171 (9%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG  +KPG TR DL + N  I R++ E +          + +NPV+    +   
Sbjct: 76  DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD---ILTYA 132
Query: 150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ-- 207
            +K +G    + +   T+LD  R    + E                H G T LP+ SQ  
Sbjct: 133 TWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAY 191
Query: 208 ---------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 249
                    V+      Q++ E +   +++   +++E K GA    ++M L
Sbjct: 192 IGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIE-KKGATYYGIAMGL 241

>pdb|1I10|A Chain A, Human Muscle L-Lactate Dehydrogenase M Chain, Ternary Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 135 LISNPVNSTVPIAAEV 150
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJP|A Chain A, Human Ldha In Complex With 2-((4-(4-((3-((2-Methyl-1,3- Benzothiazol-6yl)amino)-3-Oxo-Propyl)amino)-4-Oxo-Butyl) Phenyl)methyl)propanedioic Acid Length = 337

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LVII AG  ++ G +R +L   N  I + +   + K  PN  + 
Sbjct: 74  PKIVSGKDYNVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPNCKLL 133
Query: 135 LISNPVNSTVPIAAEV 150
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|2ZQY|A Chain A, T-State Structure Of Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei Length = 326

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTY 133
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAEXXXXXXXXXXXXXXXXHAGVTILPLLSQ 207
              K   +   +++G  T LD  R    +AE                H G T  P+ S 
Sbjct: 134 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSH 191

>pdb|3VKU|A Chain A, Penta Mutant Of Lactobacillus Casei Lactate Dehydrogenase Length = 326

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           DLV+I AG P+KPG TR DL N N  I++++ + I     N    + +NPV+
Sbjct: 78  DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD 129

>pdb|1WZE|A Chain A, Structural Basis For Alteration Of Cofactor Specificity Of Malate Dehydrogenase From Thermus Flavus Length = 327

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 14/168 (8%)
Query: 22  KVAILGAAGGIGQPL-------AMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA--V 72
           +VA+ GAAG IG  L        ML K  P++  L L    +   +   +  ++  A  +
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQL-LGSERSFQALEGVVMELEDCAFPL 64
Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNA 131
           + G       + A    D  ++    PRK GM R DL  +N  I       +A+    + 
Sbjct: 65  LAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDV 124
Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE 179
            V ++ NP N+   IA   +K A   +P+    +T LD  RA   +A+
Sbjct: 125 KVLVVGNPANTNALIA---YKNAPGLNPRNFTAMTRLDHNRAKAQLAK 169

>pdb|2E37|A Chain A, Structure Of Tt0471 Protein From Thermus Thermophilus Length = 310

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVXTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|4A73|A Chain A, Single Point Mutant Of Thermus Thermophilus Lactate Dehydrogenase Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|2V6M|A Chain A, Crystal Structure Of Lactate Dehydrogenase From Thermus Thermophilus Hb8 (Apo Form) Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   ++ +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YRLSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|1LLC|A Chain A, Structure Determination Of The Allosteric L-Lactate Dehydrogenase From Lactobacillus Casei At 3.0 Angstroms Resolution Length = 325

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 90  DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 149
           DLV+I AG P++PG TR DL N N  I++++ + I     N    + +NPV+    I   
Sbjct: 77  DLVVITAGAPKQPGETRLDLVNKNLKILKSIVDPIVDSGFNLIFLVAANPVD----ILTY 132
Query: 150 VFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
              K   +   +++G  T LD  R    +AE
Sbjct: 133 ATWKLSGFPKNRVVGSGTSLDTARFRQSIAE 163

>pdb|3PQD|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis Complexed With Fbp And Nad+ Length = 326

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 82  LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 196
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVHAHIIGEH 178
Query: 197 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 246 SMRL 249
           +M L
Sbjct: 237 AMSL 240

>pdb|2XXB|A Chain A, Penta-Mutant Of Thermus Thermophilus Lactate Dehydrogenase, Complex With Amp Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 5/95 (5%)
Query: 86  LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP 145
           L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + + +NPV+    
Sbjct: 65  LEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQ 124
Query: 146 IAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 179
           +A   +  +G   P +++G  T+LD  R    +AE
Sbjct: 125 VA---YALSGL-PPGRVVGSGTILDTARFRALLAE 155

>pdb|3PQE|A Chain A, Crystal Structure Of L-Lactate Dehydrogenase From Bacillus Subtilis With H171c Mutation Length = 326

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 58/244 (23%), Positives = 99/244 (40%), Gaps = 26/244 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA++GA G +G   A  +    +   L + DV N      D+  ++ G   + F  QP 
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDV-NKEKAMGDVMDLNHG---KAFAPQPV 61
Query: 82  LENALT-----GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
             +  T       D+V I AG  +KPG TR +L   N  I + +   +     +    + 
Sbjct: 62  KTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVA 121
Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEXXXXXXXXXXXXXXXXH 196
           +NPV+    +    +K +G    + +   T LD  R    ++E                H
Sbjct: 122 TNPVD---ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHIIGEH 178
Query: 197 AGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 245
            G T LP+ S            V+   ++ QEE + + + ++N    ++E K GA    +
Sbjct: 179 -GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIE-KKGATYYGV 236
Query: 246 SMRL 249
           +M L
Sbjct: 237 AMSL 240

>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate Dehydrogenase Framework Length = 332

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKELADEIALVDVMEDKLKGEMMDLQH---GSL---FLRT 74
Query: 80  PQL-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++      N      LV+I AG  ++ G +R +L   N  I + +   I K  PN  + 
Sbjct: 75  PKIVSGKDYNVTANSRLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKYSPNCKLL 134
Query: 135 LISNPVNSTVPIAAEV 150
           ++SNPV+    +A ++
Sbjct: 135 VVSNPVDILTYVAWKI 150

>pdb|3H3F|A Chain A, Rabbit Muscle L-Lactate Dehydrogenase In Complex With Nadh And Oxamate Length = 331

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 67/139 (48%), Gaps = 20/139 (14%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVMEDKLKGEMMDLQH---GSL---FLRT 73
Query: 80  PQLENALTGMD--------LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 131
           P++   ++G D        LVII AG  ++ G +R +L   N  I + +   + K  P+ 
Sbjct: 74  PKI---VSGKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPHC 130
Query: 132 TVNLISNPVNSTVPIAAEV 150
            + ++SNPV+    +A ++
Sbjct: 131 KLLVVSNPVDILTYVAWKI 149

>pdb|4AJ1|A Chain A, Rat Ldha In Complex With N-(2-(Methylamino)-1,3- Benzothiazol-6-Yl)acetamide Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73
Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133
Query: 135 LISNPVNSTVPIAAEV 150
           ++SNPV+    +A ++
Sbjct: 134 IVSNPVDILTYVAWKI 149

>pdb|4AJ4|A Chain A, Rat Ldha In Complex With 4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl) Amino)-4-Oxo-Butanoic Acid Length = 332

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 64/136 (47%), Gaps = 14/136 (10%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 74
Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 75  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 134
Query: 135 LISNPVNSTVPIAAEV 150
           ++SNPV+    +A ++
Sbjct: 135 IVSNPVDILTYVAWKI 150

>pdb|1CIV|A Chain A, Chloroplast Nadp-Dependent Malate Dehydrogenase From Flaveria Bidentis Length = 385

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 99  PRKPGMTRDDLFNINAGIVRTLCEGI-AKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY 157
           PR PGM R DL +IN  I     + + A   PN  V ++ NP N+   I     K A   
Sbjct: 129 PRGPGMERADLLDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALIC---LKNAPNI 185
Query: 158 DPKKLLGVTMLDVVRANTFVA 178
            PK    +T LD  RA   +A
Sbjct: 186 PPKNFHALTRLDENRAKCQLA 206

>pdb|6LDH|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 330

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 75
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 23  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 81
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 82  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 136
Query: 136 ISNPVNSTVPIAAEV 150
           +SNPV+    +A ++
Sbjct: 137 VSNPVDVLTYVAWKL 151

>pdb|1LDM|A Chain A, Refined Crystal Structure Of Dogfish M4 Apo-Lactate Dehydrogenase Length = 329

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 12/135 (8%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISH----MDTGAVVRG 75
           K+ ++G  G +G   A+ + +  L   + L DV+     G   D+ H    + T  +V G
Sbjct: 22  KITVVGV-GAVGMACAISILMKDLADEVALVDVMEDKLKGEMMDLQHGSLFLHTAKIVSG 80
Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
                +  +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+  + +
Sbjct: 81  -----KDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCIILV 135
Query: 136 ISNPVNSTVPIAAEV 150
           +SNPV+    +A ++
Sbjct: 136 VSNPVDVLTYVAWKL 150

>pdb|2LDX|A Chain A, Characterization Of The Antigenic Sites On The Refined 3- Angstroms Resolution Structure Of Mouse Testicular Lactate Dehydrogenase C4 Length = 331

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 10/125 (8%)
Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ ++G  G +G   A+ + +  L   L L D  +T  +  +   +  G++   FL  P+
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDA-DTDKLRGEALDLQHGSL---FLSTPK 75
Query: 82  L-----ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
           +      N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + ++
Sbjct: 76  IVFGKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVV 135
Query: 137 SNPVN 141
           +NPV+
Sbjct: 136 TNPVD 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	258
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	1e-140
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	1e-136
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	1e-129
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	2e-40
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	2e-38
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	2e-37
3tl2_A	315	Malate dehydrogenase; center for structural genomi	6e-37
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	1e-36
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-36
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	2e-36
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	4e-36
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	4e-36
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	7e-36
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	1e-35
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	4e-35
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	2e-34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	2e-33
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	5e-33
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	1e-32
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	1e-32
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	2e-32
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	2e-32
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	2e-32
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	3e-32
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	4e-32
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	8e-32
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	2e-31
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	2e-31
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	2e-30
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	2e-30
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	3e-30
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	5e-30
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	7e-30
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	3e-29
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	5e-28
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	5e-26
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	3e-08
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	2e-07
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	4e-07
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A Length = 326

 Score =  395 bits (1017), Expect = e-140
 Identities = 219/235 (93%), Positives = 225/235 (95%)

Query: 13  RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAV 72
           RAKGGA GFKVAILGAAGGIGQPLAMLMK+NPLVSVLHLYDVVN PGVTADISHMDTGAV
Sbjct: 1   RAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAV 60

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
           VRGFLGQ QLE ALTGMDL+I+PAGVPRKPGMTRDDLF INAGIV+TLCEGIAKCCP A 
Sbjct: 61  VRGFLGQQQLEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAI 120

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 192
           VNLISNPVNSTVPIAAEVFKKAGTYDPK+LLGVTMLDVVRANTFVAEVLGLDPRDVDVPV
Sbjct: 121 VNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPV 180

Query: 193 VGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           VGGHAGVTILPLLSQVKPP SFTQEE  YLT+RIQNGGTEVVEAKAGAGSATLSM
Sbjct: 181 VGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSM 235

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* Length = 314

 Score =  385 bits (990), Expect = e-136
 Identities = 148/226 (65%), Positives = 179/226 (79%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 201
           ST+PI AEVFKK G Y+P K+ GVT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTI 181

Query: 202 LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           +PL+SQ  P   F Q++   LT RIQ  GTEVV+AKAGAGSATLSM
Sbjct: 182 IPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSM 227

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* Length = 312

 Score =  367 bits (944), Expect = e-129
 Identities = 143/228 (62%), Positives = 171/228 (75%), Gaps = 4/228 (1%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G 
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG- 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 61  EDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
           VN+TV IAAEV KKAG YD  KL GVT LD++R+NTFVAE+ G  P +V+VPV+GGH+GV
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGV 180

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 247
           TILPLLSQV P  SFT++E   LT RIQN GTEVVEAKAG GSATLSM
Sbjct: 181 TILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSM 227

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} Length = 343

 Score =  141 bits (358), Expect = 2e-40
 Identities = 63/245 (25%), Positives = 97/245 (39%), Gaps = 26/245 (10%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTP-GVTADISHMDTGAVVRGFLGQ 79
           K+ I+GAAG IG  +A    +  L   L LYD       GV  +I     G         
Sbjct: 10  KLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEI--RHCGFEGLNLTFT 67

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISN 138
             ++ ALT    ++   G PRK GMTR+DL   NA I   L + I   CP+   V +I N
Sbjct: 68  SDIKEALTDAKYIVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127

Query: 139 PVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 197
           P + T  +       +G   P ++  +  LD  R  + +A+  G+    V      GGH 
Sbjct: 128 PADITGLVT---LIYSG-LKPSQVTTLAGLDSTRLQSELAKHFGIKQSLVTNTRTYGGH- 182

Query: 198 GVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG-----AGS 242
           G  +             L+ +      T E+   L  R+  GG  +++ +          
Sbjct: 183 GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRGRSSFQSPSY 242

Query: 243 ATLSM 247
            ++ M
Sbjct: 243 VSIEM 247

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A Length = 303

 Score =  135 bits (342), Expect = 2e-38
 Identities = 57/235 (24%), Positives = 103/235 (43%), Gaps = 28/235 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT----ADISHMDTGAVVRGFL 77
           KV+++GAAG +G      + +  +   +   D+ +    T    AD +H         + 
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHG------IAYD 55

Query: 78  GQPQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
              ++         G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +   
Sbjct: 56  SNTRVRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYIS 115

Query: 134 NLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPV 192
              SNPV+    +      +AG    ++++G    LD  R    ++E      ++V+  +
Sbjct: 116 LTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFRYVLSEEFDAPVQNVEGTI 171

Query: 193 VGGHAGVTILPLLSQV----KPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           +G H G   +P+ S+V      P  F+ +E E L   +Q    +V+E K   G+ 
Sbjct: 172 LGEH-GDAQVPVFSKVSVDGTDP-EFSGDEKEQLLGDLQESAMDVIERK---GAT 221

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* Length = 313

 Score =  132 bits (335), Expect = 2e-37
 Identities = 61/247 (24%), Positives = 111/247 (44%), Gaps = 30/247 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGF- 76
           KV I+GA+G +G   A+L+   P +  L L    +      G+  DI             
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYD---ALAGTRSD 58

Query: 77  ----LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT 132
               +   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    
Sbjct: 59  ANIYVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK- 117

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP 191
           + +I+NPV+    +          ++  ++ G+ T LD +R    +A+  G+   +V   
Sbjct: 118 IFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRTR 173

Query: 192 VVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA---- 240
           ++G H G +++PLLS        ++    F +   + +   ++  G +++  K G+    
Sbjct: 174 IIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLKGGSEFGP 232

Query: 241 GSATLSM 247
            +A L++
Sbjct: 233 AAAILNV 239

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} Length = 315

 Score =  131 bits (332), Expect = 6e-37
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 24/235 (10%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA----DISHMDTGAVVRGFL 77
           KV+++GA G  G   A L+    L  V+ L D+      T     D+      + V+GF 
Sbjct: 10  KVSVIGA-GFTGATTAFLLAQKELADVV-LVDIPQLENPTKGKALDMLE---ASPVQGFD 64

Query: 78  GQPQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                 +        D+V+I AG+ RKPGM+RDDL   N+ I++++   IAK  PNA + 
Sbjct: 65  ANIIGTSDYADTADSDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIV 124

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           +++NPV+           K   +  ++++G   +LD  R  TF+A+ L L  +D+   V+
Sbjct: 125 VLTNPVD----AMTYSVFKEAGFPKERVIGQSGVLDTARFRTFIAQELNLSVKDITGFVL 180

Query: 194 GGHAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           GGH G  ++PL+        P  +   +E  E +  R + GG E+V    G GSA
Sbjct: 181 GGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVG-LLGNGSA 233

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} Length = 314

 Score =  130 bits (329), Expect = 1e-36
 Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 20/227 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++GA G +G  +A  +    +   + + D+ +    G   D+      + + GF  +
Sbjct: 2   KVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRE---SSPIHGFDTR 57

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D+ II AG+PR PGM+RDDL   N  IV  + E   +  P++T+ ++
Sbjct: 58  VTGTNDYGPTEDSDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVV 117

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    +   V  +A  +   +++G+  +LD  R  +F+AE L +  RDV   ++GG
Sbjct: 118 ANPLD----VMTYVAYEASGFPTNRVMGMAGVLDTGRFRSFIAEELDVSVRDVQALLMGG 173

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAK 237
           H G T++PL         P          E +  R +  G E+V+  
Sbjct: 174 H-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM 219

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* Length = 310

 Score =  129 bits (328), Expect = 2e-36
 Identities = 74/233 (31%), Positives = 112/233 (48%), Gaps = 21/233 (9%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G +G   A  +    L   L L DVV     G   D+        V  F  +
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYE---SGPVGLFDTK 57

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++
Sbjct: 58  VTGSNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVV 117

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           SNP++    I   V         ++++G+  +LD  R  +F+A  LG+  +D++  V+GG
Sbjct: 118 SNPLD----IMTHVAWVRSGLPKERVIGMAGVLDAARFRSFIAMELGVSMQDINACVLGG 173

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G  ++P++        P       E  + L  R +NGG E+VE     GSA
Sbjct: 174 H-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSA 224

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* Length = 309

 Score =  129 bits (328), Expect = 2e-36
 Identities = 63/233 (27%), Positives = 107/233 (45%), Gaps = 22/233 (9%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G +G   A  +    L  ++ L D+V     G   D+      + + GF  +
Sbjct: 4   KISIIGA-GFVGSTTAHWLAAKELGDIV-LLDIVEGVPQGKALDLYE---ASPIEGFDVR 58

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N        D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + ++
Sbjct: 59  VTGTNNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMV 118

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++        +  +   +  ++++G   +LD  R  TF+A   G+   DV   ++GG
Sbjct: 119 NNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAARYRTFIAMEAGVSVEDVQAMLMGG 174

Query: 196 HAGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G  ++PL         P   F   +    +  R + GG E+V      GSA
Sbjct: 175 H-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTGSA 225

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} Length = 321

 Score =  129 bits (327), Expect = 4e-36
 Identities = 81/238 (34%), Positives = 121/238 (50%), Gaps = 27/238 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G IG  LA L  I  L  V+ L+D+      G   D+        + G   +
Sbjct: 7   KITLVGA-GNIGGTLAHLALIKQLGDVV-LFDIAQGMPNGKALDLLQ---TCPIEGVDFK 61

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
            +  N    L   D+VI+ AGVPRKPGM+RDDL  IN  +++T+ EGI   CPNA V  I
Sbjct: 62  VRGTNDYKDLENSDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICI 121

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    I   + +K       K++G+  +LD  R  TF+A+ L +  + V   V+GG
Sbjct: 122 TNPLD----IMVNMLQKFSGVPDNKIVGMAGVLDSARFRTFLADELNVSVQQVQAYVMGG 177

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G T++PL          L Q+       QE  + + +R ++GG E+V      GSA
Sbjct: 178 H-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KTGSA 233

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} Length = 308

 Score =  129 bits (326), Expect = 4e-36
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 26/241 (10%)

Query: 23  VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQP 80
           + ILGA G +G   A+++ +     +L L         G   D++H    A   G   + 
Sbjct: 2   ITILGA-GKVGMATAVMLMMRGYDDLL-LIARTPGKPQGEALDLAH---AAAELGVDIRI 56

Query: 81  QLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
              N    + G D+V++ AG+ RKPGMTR+ L   NA  +  L E I     +A V + +
Sbjct: 57  SGSNSYEDMRGSDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT 116

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGH 196
           NPV+        V  K   +  ++++G   +LD  R   ++++ LG+  + V+  V+G H
Sbjct: 117 NPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMAYYISQKLGVSFKSVNAIVLGMH 172

Query: 197 AGVTILPLLSQV----KPPCSF-TQEETEYLTNRIQNGGTEVVEAKAGA-----GSATLS 246
            G  + P+         P     ++EE E + +   N G ++ E +  +      +  + 
Sbjct: 173 -GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELRGYSSNYGPAAGLVL 231

Query: 247 M 247
            
Sbjct: 232 T 232

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} Length = 328

 Score =  129 bits (326), Expect = 7e-36
 Identities = 80/238 (33%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K++I+GA G IG  +A+L+    L  V  ++D++     G   D++H      + G   +
Sbjct: 16  KISIIGA-GQIGSTIALLLGQKDLGDVY-MFDIIEGVPQGKALDLNH---CMALIGSPAK 70

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
              EN    L   D+VII AGVPRKP MTR DL  +NA IV ++ E + K CPNA V  I
Sbjct: 71  IFGENNYEYLQNSDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICI 130

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++         FK+       K+ G+  +LD  R    ++  LG+ P DV   VVGG
Sbjct: 131 TNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSARFRCNLSRALGVKPSDVSAIVVGG 186

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G  ++PL          LS        T  +   +  +   GG E+VE     GSA
Sbjct: 187 H-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGSA 242

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A Length = 317

 Score =  128 bits (324), Expect = 1e-35
 Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 27/238 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  +A ++  + L  V+ L+D+      G   DI+H     V+ G   +
Sbjct: 6   KIAVIGS-GQIGGNIAYIVGKDNLADVV-LFDIAEGIPQGKALDITH---SMVMFGSTSK 60

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               +    ++G D+VII A +P +P   R +L   NA I+ ++ EG+ K CPNA V  I
Sbjct: 61  VIGTDDYADISGSDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICI 120

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++    +    F+K       K+ G+  +LD  R  TF+A+  G++  DV   V+GG
Sbjct: 121 TNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSRFRTFIAQHFGVNASDVSANVIGG 176

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G  ++P           LS        TQE+ + +    +    EV +     G+A
Sbjct: 177 H-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGTA 232

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* Length = 324

 Score =  126 bits (320), Expect = 4e-35
 Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 27/238 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++G+ G IG  LA L  +  L  V+ L+D+      G   DI+     + V GF  +
Sbjct: 9   KIALIGS-GMIGGTLAHLAGLKELGDVV-LFDIAEGTPQGKGLDIAE---SSPVDGFDAK 63

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
               N   A+ G D+VI+ AGVPRKPGM+RDDL  IN  ++  +  GI K  P A V  I
Sbjct: 64  FTGANDYAAIEGADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICI 123

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGG 195
           +NP++          +K       K++G+  +LD  R   F++E   +   DV V V+GG
Sbjct: 124 TNPLD----AMVWALQKFSGLPAHKVVGMAGVLDSARFRYFLSEEFNVSVEDVTVFVLGG 179

Query: 196 HAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           H G +++PL          L  +      +Q++ + +  R ++GG E+V      GSA
Sbjct: 180 H-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL-KTGSA 235

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* Length = 331

 Score =  124 bits (315), Expect = 2e-34
 Identities = 73/244 (29%), Positives = 114/244 (46%), Gaps = 33/244 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--- 76
           KVA++G+ G IG  +  L  +  L  V+ LYDVV     G   D+SH      V      
Sbjct: 11  KVAMIGS-GMIGGTMGYLCALRELADVV-LYDVVKGMPEGKALDLSH---VTSVVDTNVS 65

Query: 77  -LGQPQLENALTGMDLVIIPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPN 130
              +   E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP 
Sbjct: 66  VRAEYSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK 125

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
             + +++NP++       +V  +A       + G+  MLD  R   +VA+ L + PRDV 
Sbjct: 126 TFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACMLDSGRFRRYVADALSVSPRDVQ 181

Query: 190 VPVVGGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
             V+G H G  ++PL+  +                T+++ E +    +  G E+V    G
Sbjct: 182 ATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL-G 239

Query: 240 AGSA 243
            GSA
Sbjct: 240 QGSA 243

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* Length = 322

 Score =  122 bits (309), Expect = 2e-33
 Identities = 65/243 (26%), Positives = 110/243 (45%), Gaps = 34/243 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G+ G IG  +A L+    L  V+ L+D+V     G   D SH     V+     +
Sbjct: 6   KIVLVGS-GMIGGVMATLIVQKNLGDVV-LFDIVKNMPHGKALDTSH---TNVMAYSNCK 60

Query: 80  PQLEN---ALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 131
               N    L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 61  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 120

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDV 190
            + +++NPV+    +  ++  +       K++G+  +LD  R   ++++ L + PRDV+ 
Sbjct: 121 FIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGVLDTSRLKYYISQKLNVCPRDVNA 176

Query: 191 PVVGGHAGVTILPL----------LSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGA 240
            +VG H G  ++ L          L +       +  E E + +R  N   E+V      
Sbjct: 177 HIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH--- 232

Query: 241 GSA 243
            S 
Sbjct: 233 ASP 235

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* Length = 316

 Score =  121 bits (305), Expect = 5e-33
 Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 29/234 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           +V ++GA G +G      +    +   + L D       G   D +H   G V   F  +
Sbjct: 8   RVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNH---GKV---FAPK 60

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P              DLV+I AG  +KPG TR DL + N  I R++ E +          
Sbjct: 61  PVDIWHGDYDDCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFL 120

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I      K      ++++G  T+LD  R    + E   + P++V   ++
Sbjct: 121 VATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARFRFLLGEYFSVAPQNVHAYII 176

Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           G H        +   I  +P+   V+      Q++ E +   +++   +++E K
Sbjct: 177 GEHGDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK 230

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* Length = 326

 Score =  120 bits (304), Expect = 1e-32
 Identities = 56/240 (23%), Positives = 100/240 (41%), Gaps = 32/240 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVA++GA G +G   A  +    +   L + DV      G   D++H   G     F  Q
Sbjct: 7   KVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNH---GKA---FAPQ 59

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P   +          D+V I AG  +KPG TR +L   N  I + +   +     +    
Sbjct: 60  PVKTSYGTYEDCKDADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFL 119

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I      K      ++++G  T LD  R    ++E  G  P++V   ++
Sbjct: 120 VATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARFRFMLSEYFGAAPQNVCAHII 175

Query: 194 GGH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H        +   +  +P+   V+   ++ QEE + + + ++N    ++E K   G+ 
Sbjct: 176 GEHGDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GAT 232

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* Length = 333

 Score =  120 bits (304), Expect = 1e-32
 Identities = 56/246 (22%), Positives = 94/246 (38%), Gaps = 32/246 (13%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
           +V + GAAG I   L        +  K  P++  L L D+        GV  ++   D  
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPII--LVLLDITPMMGVLDGVLMEL--QDCA 60

Query: 71  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              ++  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K   
Sbjct: 61  LPLLKDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAK 120

Query: 130 NAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            +  V ++ NP N+    A+   K A +   +    +T LD  RA   +A  LG+   DV
Sbjct: 121 KSVKVIVVGNPANTNCLTAS---KSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTSDDV 177

Query: 189 DVPVVGGHAGVTILPLLSQ-----------VKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
              ++ G+   T  P ++            V                 +Q  G  V++A+
Sbjct: 178 KNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIKAR 237

Query: 238 AGAGSA 243
               SA
Sbjct: 238 -KLSSA 242

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* Length = 326

 Score =  119 bits (302), Expect = 2e-32
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 31/239 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  M +  +   + + D+    T G   D+S+         F   
Sbjct: 11  KVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSN---ALP---FTSP 63

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     +     DLV+I AG P+KPG TR DL N N  I++++ + I     N    +
Sbjct: 64  KKIYSAEYSDAKDADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV 123

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    I      K   +   +++G  T LD  R    +AE++ +D R V   ++G
Sbjct: 124 AANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFRQSIAEMVNVDARSVHAYIMG 179

Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
            H        +   I  + +   VK      +++   +   +++   E+++ K   G+ 
Sbjct: 180 EHGDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT 235

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 Length = 319

 Score =  119 bits (302), Expect = 2e-32
 Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 31/239 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ I+G  G +G   A  + +      + L DV      G   D+ H   G     F  +
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIH---GTP---FTRR 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             +       L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +
Sbjct: 55  ANIYAGDYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
           ++NPV+    +    F K    DP+K+ G  T+LD  R  T +A+  G  PR V V V+G
Sbjct: 115 VTNPVD----VLTYFFLKESGMDPRKVFGSGTVLDTARLRTLIAQHCGFSPRSVHVYVIG 170

Query: 195 GH--------AGVTI--LPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
            H        +G  I  +PL +  +       +  E    + +    E++E K   G+ 
Sbjct: 171 EHGDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GAT 226

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  119 bits (301), Expect = 2e-32
 Identities = 52/233 (22%), Positives = 93/233 (39%), Gaps = 29/233 (12%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  M    +     + DVV   T G   D+           F   
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLED---AQA---FTAP 59

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    +
Sbjct: 60  KKIYSGEYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLV 119

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    I      K   +  ++++G  T LD  R    + +   +DPR VD  ++G
Sbjct: 120 AANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRVALGKQFNVDPRSVDAYIMG 175

Query: 195 GHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAK 237
            H G +     S                  + ++   L + ++N   +++  K
Sbjct: 176 EH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK 227

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* Length = 317

 Score =  119 bits (301), Expect = 3e-32
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 33/240 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  +    +V  L + D+      G   D+ H         +   
Sbjct: 8   KVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATP------YSPT 60

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
                A         DLV+I AG  +KPG TR DL + N  I +++   +     +    
Sbjct: 61  TVRVKAGEYSDCHDADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFL 120

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           + +NPV+    I A    K      ++++G  T+LD  R    ++E   + PR VD  ++
Sbjct: 121 VATNPVD----ILAYATWKFSGLPKERVIGSGTILDSARFRLLLSEAFDVAPRSVDAQII 176

Query: 194 GGHAGVTILPLLSQVK----------PPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H G T LP+ S                   + + E +  + ++   ++++AK   G+ 
Sbjct: 177 GEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GAT 232

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* Length = 319

 Score =  118 bits (299), Expect = 4e-32
 Identities = 53/237 (22%), Positives = 94/237 (39%), Gaps = 33/237 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++GA G +G  LA       +   + L D+          D+ H   G+    F   
Sbjct: 9   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQH---GSS---FYPT 61

Query: 80  PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
             ++           D+V+I AG  +KPG +R +L      I++ +   + K  PNA   
Sbjct: 62  VSIDGSDDPEICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYM 121

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           LI+NPV+    IA  V +K       ++ G  T LD  R    +A+  G++ ++V   + 
Sbjct: 122 LITNPVD----IATHVAQKLTGLPENQIFGSGTNLDSARLRFLIAQQTGVNVKNVHAYIA 177

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           G H              GV +               ++ E +   ++N   +++  K
Sbjct: 178 GEHGDSEVPLWESATIGGVPMSDWTPLPGHDP-LDADKREEIHQEVKNAAYKIINGK 233

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 Length = 318

 Score =  118 bits (298), Expect = 8e-32
 Identities = 67/242 (27%), Positives = 111/242 (45%), Gaps = 36/242 (14%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KVAI+GA G +G   A  M +    + L L DV      G   DI+H   G     F+GQ
Sbjct: 9   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINH---GLP---FMGQ 61

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             L     + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + +
Sbjct: 62  MSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILV 121

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
           +SNPV+    I   + +K       K++G  T+LD +R    ++E LG+D ++V   ++G
Sbjct: 122 VSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFRYLLSEKLGVDVKNVHGYIIG 177

Query: 195 GH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
            H             AG  I   +   K    FT+E+ + +   ++  G  +++ K   G
Sbjct: 178 EHGDSQLPLWSCTHIAGKNINEYIDDPKCN--FTEEDKKKIAEDVKTAGATIIKNK---G 232

Query: 242 SA 243
           + 
Sbjct: 233 AT 234

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A Length = 310

 Score =  117 bits (295), Expect = 2e-31
 Identities = 51/235 (21%), Positives = 94/235 (40%), Gaps = 31/235 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           KV I+G+ G +G   A  + +  +   + L D+          DI H         F   
Sbjct: 2   KVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATP------FAHP 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
             +       L G   V++ AGV ++PG TR  L + NA +   +   + +  P A + +
Sbjct: 55  VWVWAGSYGDLEGARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
            +NPV+    +  +V        P +++G  T+LD  R    +AE L + P+ V   V+G
Sbjct: 115 ATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRALLAEYLRVAPQSVHAYVLG 170

Query: 195 GHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
            H G + + + S                  + + E+   +   ++     ++E K
Sbjct: 171 EH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK 224

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... Length = 331

 Score =  117 bits (296), Expect = 2e-31
 Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 32/236 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L DV+     G   D+ H   G++   FL  
Sbjct: 21  KITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQH---GSL---FLKT 73

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++ ++          LVII AG  ++ G +R +L   N  I + +   + K  P   + 
Sbjct: 74  PKIVSSKDYSVTANSKLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLL 133

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           ++SNPV+    I   V  K   +   +++G    LD  R    + E LG+ P      V+
Sbjct: 134 IVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSARFRYLMGERLGVHPLSCHGWVL 189

Query: 194 GGHAGVTILPLLSQV------------KPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           G H G + +P+ S V            +      +E+ + +  ++ +   EV++ K
Sbjct: 190 GEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK 244

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A Length = 329

 Score =  115 bits (289), Expect = 2e-30
 Identities = 60/244 (24%), Positives = 91/244 (37%), Gaps = 30/244 (12%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP------GVTADISHMD 68
           +VA+ GAAG I   L        ML K  P++  L L ++ N        GV  +I   D
Sbjct: 7   RVAVTGAAGQICYSLLFRIANGDMLGKDQPVI--LQLLEIPNEKAQKALQGVMMEI--DD 62

Query: 69  TGA-VVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC 127
               ++ G         A    D+ ++    PR PGM R DL   NA I     + I   
Sbjct: 63  CAFPLLAGMTAHADPMTAFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAV 122

Query: 128 C-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPR 186
              N  V ++ NP N+   IA    K A +   K    +  LD  RA + +A   G    
Sbjct: 123 ASRNIKVLVVGNPANTNAYIAM---KSAPSLPAKNFTAMLRLDHNRALSQIAAKTGKPVS 179

Query: 187 DVDVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAG 239
            ++   V G+   T+             VK   +      +     +   G  +++A+ G
Sbjct: 180 SIEKLFVWGNHSPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-G 238

Query: 240 AGSA 243
             SA
Sbjct: 239 VSSA 242

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A Length = 303

 Score =  113 bits (286), Expect = 2e-30
 Identities = 40/218 (18%), Positives = 76/218 (34%), Gaps = 20/218 (9%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPGVTADISHMDTGAVVRGFLGQP 80
           K+ ++G  G +G    + +    +   L L D+   T G T D+   +   V        
Sbjct: 16  KITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEIS----- 69

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
           +  +A     +VI           +  D+   N  + R L   +     ++ + + S P 
Sbjct: 70  KDLSASAHSKVVIFTVN-SLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQP- 127

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGV 199
              V I   V  K  T+   +++G+   LD  R    +  VL       +V V+G   G 
Sbjct: 128 ---VEIMTYVTWKLSTFPANRVIGIGCNLDSQRLQYIITNVLKAQTSGKEVWVIGEQ-GE 183

Query: 200 TILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
             +   S  +         +     ++ N   E++  K
Sbjct: 184 DKVLTWSGQEE------VVSHTSQVQLSNRAMELLRVK 215

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A* Length = 294

 Score =  113 bits (286), Expect = 3e-30
 Identities = 52/230 (22%), Positives = 100/230 (43%), Gaps = 27/230 (11%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+  +GA G +G   A    +N  V  + L D+      G   D++H    A        
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAH---AAAGIDK--Y 55

Query: 80  PQLENA-----LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
           P++        L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + 
Sbjct: 56  PKIVGGADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKIL 115

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           +++NP++    +   +  K       ++ G+   LD  R    +      + R     ++
Sbjct: 116 VVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKERLYNAGARNIRRAW--II 169

Query: 194 GGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 243
           G H G ++    S         + + E + N ++    EV++ K   G+ 
Sbjct: 170 GEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GAT 212

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 Length = 330

 Score =  113 bits (285), Expect = 5e-30
 Identities = 43/195 (22%), Positives = 77/195 (39%), Gaps = 20/195 (10%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G    +G   A+ + +  L   + L DV+     G   D+ H   G++   FL  
Sbjct: 23  KITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEH---GSL---FLHT 75

Query: 80  PQLE-----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
            ++      +   G  LV+I AG  ++ G +R +L   N  I + +   I K  P+    
Sbjct: 76  AKIVSGKDYSVSAGSKLVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKE 135

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
           L             +   K       +++G    LD  R    + E LG+    V   V+
Sbjct: 136 LHPELGT----DKNKQDWKLSGLPMHRIIGSGCNLDSARFRYLMGERLGVHSCLVIGWVI 191

Query: 194 GGHAGVTILPLLSQV 208
           G H G ++  + S +
Sbjct: 192 GQH-GDSVPSVWSGM 205

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* Length = 327

 Score =  113 bits (284), Expect = 7e-30
 Identities = 59/240 (24%), Positives = 93/240 (38%), Gaps = 25/240 (10%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTPGVTADISHMDT----G 70
           +VA+ GAAG IG  L        ML K  P++  L L ++        +   M+      
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVI--LQLLEIPQAMKA-LEGVVMELEDCAF 62

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
            ++ G       + A    D  ++    PRK GM R DL  +N  I       +A+    
Sbjct: 63  PLLAGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKK 122

Query: 131 AT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD 189
              V ++ NP N+   IA    K A   +P+    +T LD  RA   +A+  G     + 
Sbjct: 123 DVKVLVVGNPANTNALIAY---KNAPGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIR 179

Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEE--TEYLTNRIQNGGTEVVEAKAGAGSA 243
              V G+   T+ P L       +P       E   +     +   G  +++A+ GA SA
Sbjct: 180 RMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GASSA 238

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* Length = 375

 Score =  112 bits (282), Expect = 3e-29
 Identities = 55/242 (22%), Positives = 85/242 (35%), Gaps = 28/242 (11%)

Query: 22  KVAILGAAGGIGQPLA-------MLMKINPLVSVLHLYDVVNTP----GVTADISHMDTG 70
            +A+ GAAG I   L        +  +  P+   L L     +     GV  ++   D+ 
Sbjct: 34  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIA--LKLLGSERSFQALEGVAMEL--EDSL 89

Query: 71  AV-VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 129
              +R              +D  ++    PR PGM R  L +IN  I     + +     
Sbjct: 90  YPLLREVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVAS 149

Query: 130 -NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDV 188
            N  V ++ NP N+   I     K A     K    +T LD  RA   +A   G+    V
Sbjct: 150 KNVKVLVVGNPCNTNALICL---KNAPDIPAKNFHALTRLDENRAKCQLALKAGVFYDKV 206

Query: 189 DVPVVGGHAGVTILPLLSQ-------VKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAG 241
               + G+   T +P           VK     T+   E  T  +Q  G  +++   G  
Sbjct: 207 SNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-GRS 265

Query: 242 SA 243
           SA
Sbjct: 266 SA 267

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} Length = 304

 Score =  107 bits (271), Expect = 5e-28
 Identities = 54/237 (22%), Positives = 93/237 (39%), Gaps = 37/237 (15%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           KV ++G  G +G   A  + +    S L L D           DI+H             
Sbjct: 2   KVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHA------APVSHG 54

Query: 80  PQLE----NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
            ++     + L    +VI+ AG  +KPG +R DL   NA I R L   I +  P+A + +
Sbjct: 55  TRVWHGGHSELADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV 114

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPK-KLLGV-TMLDVVRANTFVAEVLGLDPRDVDVPVV 193
            SNPV+    +  ++  +     P   ++G  T+LD  R    +A+  G+D       V+
Sbjct: 115 TSNPVD----LLTDLATQ---LAPGQPVIGSGTVLDSARFRHLMAQHAGVDGTHAHGYVL 167

Query: 194 GGH-------------AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAK 237
           G H             AG+ +   +     P  + ++    +    +N    ++E K
Sbjct: 168 GEHGDSEVLAWSSAMVAGMPVADFMQAQNLP--WNEQVRAKIDEGTRNAAASIIEGK 222

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 Length = 309

 Score =  102 bits (256), Expect = 5e-26
 Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 31/235 (13%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ I+G  G +G  +A  +    +       D           D             L  
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDA------MANLEA 55

Query: 80  PQLENA-----LTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPN 130
                      L   D+VI   G  +     P   R       + +V+++   + +   +
Sbjct: 56  HGNIVINDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFH 115

Query: 131 ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD 189
             + +ISNPV+    +   +F+    +   K++G  T+LD  R    V E   LDPR V 
Sbjct: 116 GVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDTARMQRAVGEAFDLDPRSVS 171

Query: 190 VPVVGGHAGVTILPLLSQV----KPPCSFTQEETEYLTN---RIQNGGTEVVEAK 237
              +G H G +     S V    +P  +        L       + GG  V+  K
Sbjct: 172 GYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK 225

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 Length = 480

 Score = 53.0 bits (126), Expect = 3e-08
 Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 45/210 (21%)

Query: 19  AGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTG 70
              K+ I+GA G        ++ L K   L  S + L D+    ++     A     + G
Sbjct: 2   PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVG 60

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
           A ++ F     L++ +   D VI  A V     + +        G  R            
Sbjct: 61  ADLK-FEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSD 119

Query: 120 ---------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
                          +   I K  P A     +NP+         +  +     P K +G
Sbjct: 120 YYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEG----TTLVTRTV---PIKAVG 172

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG 194
                       + E LGL+   VD  V G
Sbjct: 173 FC--HGHYGVMEIVEKLGLEEEKVDWQVAG 200

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} Length = 450

 Score = 50.5 bits (120), Expect = 2e-07
 Identities = 35/204 (17%), Positives = 64/204 (31%), Gaps = 28/204 (13%)

Query: 19  AGFKVAILGAAGGIG---QPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVR 74
              K+A +G  G  G     ++ L     +   + LYD+          I +       R
Sbjct: 4   DQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGNGRWR 62

Query: 75  GFLGQPQLENALTGMDLVIIPAGV------------PRKPGMTRDDLFNINAG------- 115
            +     L+ AL+  D+VII                P + G+ +     +  G       
Sbjct: 63  -YEAVSTLKKALSAADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLR 121

Query: 116 ---IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVR 172
              I   +   I    P + V   +NP++    +  +VF           +  T   +  
Sbjct: 122 AVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPGIKAIGCCHEVFGTQKLLAE 181

Query: 173 ANTFVAEVLGLDPRDVDVPVVGGH 196
             T    +      D+ V V+G +
Sbjct: 182 MVTERLGIEVPRREDIRVNVLGIN 205

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 Length = 472

 Score = 49.8 bits (118), Expect = 4e-07
 Identities = 39/251 (15%), Positives = 75/251 (29%), Gaps = 42/251 (16%)

Query: 8   RQAKCRAKGGAAGFKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPG 59
                ++      F + I G  G    P   L +L  +    +  L LYD      +   
Sbjct: 16  ENLYFQSNMKKKSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIA 74

Query: 60  VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT 119
              D+   +    +  F      E A T +D V+    V +      D+   +  G+V  
Sbjct: 75  GACDVFIREKAPDIE-FAATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQ 133

Query: 120 --------------------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP 159
                               + + + K  P+A +   SNP          +         
Sbjct: 134 ETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN------ 187

Query: 160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET 219
            K+L +  +  V     +A++LGL  R     +   + G+      + ++       +  
Sbjct: 188 SKILNICDM-PVGIEDRMAQILGLSSRKE---MKVRYYGLNHFGWWTSIQDQE--GNDLM 241

Query: 220 EYLTNRIQNGG 230
             L   +   G
Sbjct: 242 PKLKEHVSQYG 252

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 Length = 450

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 37/204 (18%)

Query: 20  GFKVAILGA----AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-----DTG 70
             K+A +G        + + L       P V  L L D+         +  +     +  
Sbjct: 7   RLKIATIGGGSSYTPELVEGLIKRYHELP-VGELWLVDIPEGKEKLEIVGALAKRMVEKA 65

Query: 71  AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRT----------- 119
            V            AL G D V     V       +D+   +  G++             
Sbjct: 66  GVPIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKG 125

Query: 120 ---------LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 170
                    +   + + CP+A +   +NP            K+      +K++G+  +  
Sbjct: 126 LRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ------EKVVGLCNV-P 178

Query: 171 VRANTFVAEVLGLDPRDVDVPVVG 194
           +     VA++LG+D   V +   G
Sbjct: 179 IGMRMGVAKLLGVDADRVHIDFAG 202

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 3e-04
 Identities = 36/200 (18%), Positives = 55/200 (27%), Gaps = 58/200 (29%)

Query: 72  VVRGFLGQP--QLENALT-----------GMD------LVIIPAGVPRKPGMTRDDLFNI 112
           V R    QP  +L  AL            G+       +      V     +     F I
Sbjct: 131 VSRL---QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKI 184

Query: 113 ---NAGIVRT---LCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFK-------KAGTYD 158
              N     +   + E + K       N  S   +S  + +     +       K+  Y 
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY- 243

Query: 159 PKKLLGVTMLD------VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC 212
              LL   +L          A     ++L L  R   V      A  T + L        
Sbjct: 244 ENCLL---VLLNVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISL---DHHSM 296

Query: 213 SFTQEETE-----YLTNRIQ 227
           + T +E +     YL  R Q
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQ 316

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 43/285 (15%), Positives = 74/285 (25%), Gaps = 96/285 (33%)

Query: 5   SCLRQAKCRAKG--GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA 62
           + +    C +        FK+  L        P  +L  +  L+  +        P  T+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKLLYQI-------DPNWTS 215

Query: 63  DISHM--------DTGAVVRGFLGQPQLENALTGMD-----------------LVIIPAG 97
              H            A +R  L     EN L  +                  L+     
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT---- 271

Query: 98  VPRKPGMTRD----DLFNINAGIVRTLCEGIAKCCPNATVNLISN---------P--VNS 142
                  TR     D  +       +L        P+   +L+           P  V +
Sbjct: 272 -------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 143 TVP-----IAAEVFKKAGTYDP------KKL-----LGVTMLD--VVRANTFVAEVLGLD 184
           T P     IA  +     T+D        KL       + +L+    R   F    L + 
Sbjct: 325 TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDR--LSVF 381

Query: 185 PRDVDVPVVGGHAGVTILPLL-SQVKPPCSFTQEETEYLTNRIQN 228
           P    +P         +L L+   V         +   + N++  
Sbjct: 382 PPSAHIP-------TILLSLIWFDVIK------SDVMVVVNKLHK 413

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	258
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	100.0
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	100.0
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	100.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	100.0
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	100.0
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	100.0
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	100.0
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	100.0
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	100.0
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	100.0
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	100.0
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	100.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	100.0
3tl2_A	315	Malate dehydrogenase; center for structural genomi	100.0
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	100.0
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	100.0
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	100.0
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	100.0
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	100.0
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	100.0
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	100.0
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	100.0
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	100.0
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	100.0
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	100.0
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	100.0
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	100.0
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	100.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	100.0
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	100.0
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	100.0
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	100.0
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	100.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	100.0
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	100.0
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	100.0
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	100.0
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	100.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	100.0
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	100.0
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	99.98
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	99.95
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	99.94
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	99.92
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.04
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	98.91
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	98.81
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.8
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.74
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.72
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.72
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.7
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	98.69
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.69
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	98.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.66
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	98.66
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	98.65
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.64
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.64
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.64
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	98.61
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	98.6
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	98.6
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	98.59
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.59
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.58
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.58
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	98.56
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.56
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	98.54
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	98.53
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.53
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	98.52
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	98.51
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.5
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.5
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	98.5
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.5
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	98.48
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	98.48
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	98.48
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	98.48
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.47
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	98.47
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.46
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.46
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	98.46
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	98.45
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	98.44
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.44
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	98.44
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	98.44
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	98.43
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.43
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	98.42
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.4
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	98.4
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	98.4
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.4
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	98.39
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.39
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	98.39
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.39
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.35
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	98.35
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.35
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.35
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	98.34
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	98.34
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	98.33
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	98.33
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	98.33
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.32
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	98.31
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.31
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	98.3
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.3
1xq6_A	253	Unknown protein; structural genomics, protein stru	98.29
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	98.29
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	98.28
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.27
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.27
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.26
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.26
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	98.26
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	98.24
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.24
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.23
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.22
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	98.22
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.22
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.22
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	98.22
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	98.21
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	98.21
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.21
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.21
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	98.21
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	98.2
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.2
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.2
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	98.2
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	98.19
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	98.19
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	98.18
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	98.18
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.17
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.17
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.15
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	98.15
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.14
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	98.14
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.13
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.13
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.12
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	98.12
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	98.12
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	98.12
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.12
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	98.11
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	98.1
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	98.1
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	98.1
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	98.09
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.09
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	98.09
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.09
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.08
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.08
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	98.07
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	98.07
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	98.07
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.07
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	98.06
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	98.06
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	98.04
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.04
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.03
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.02
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.02
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.02
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.0
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	98.0
4f6c_A	427	AUSA reductase domain protein; thioester reductase	97.98
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.97
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.96
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.96
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.96
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.96
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.95
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.94
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.94
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	97.94
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.94
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.93
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.93
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	97.93
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.93
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	97.92
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.91
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.91
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.89
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.89
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	97.89
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.88
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	97.86
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.86
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.86
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.85
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	97.85
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.85
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.84
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.84
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	97.83
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.83
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	97.83
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.81
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.81
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.81
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.8
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	97.8
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	97.78
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.78
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	97.77
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	97.77
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.77
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	97.77
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	97.76
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	97.76
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	97.76
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.76
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	97.76
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.75
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.74
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	97.74
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.74
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.74
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	97.73
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	97.72
4f6l_B	508	AUSA reductase domain protein; thioester reductase	97.72
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.72
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.72
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.71
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.7
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.7
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.69
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	97.69
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	97.69
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.68
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	97.68
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.68
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	97.68
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.68
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.68
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.67
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.66
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.66
3imf_A	257	Short chain dehydrogenase; structural genomics, in	97.66
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	97.65
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.65
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	97.64
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.64
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	97.63
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	97.63
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.63
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.62
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.61
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	97.6
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	97.6
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	97.6
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.59
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	97.59
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	97.58
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	97.58
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.58
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	97.57
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.57
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	97.56
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.56
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.56
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	97.56
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	97.55
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.55
1spx_A	278	Short-chain reductase family member (5L265); paral	97.55
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	97.54
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	97.54
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	97.54
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.54
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	97.54
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	97.53
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	97.53
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.52
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	97.52
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.52
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	97.51
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.51
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	97.5
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	97.5
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	97.5
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	97.5
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	97.5
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	97.49
3cxt_A	291	Dehydrogenase with different specificities; rossma	97.49
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.49
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.49
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.49
1xq1_A	266	Putative tropinone reducatse; structural genomics,	97.49
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.49
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	97.49
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.48
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	97.48
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.48
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	97.48
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	97.48
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	97.48
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.48
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	97.48
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	97.48
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.47
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	97.47
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	97.47
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	97.46
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.46
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.46
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.46
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.46
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	97.46
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	97.45
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	97.45
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	97.45
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	97.44
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	97.44
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	97.44
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	97.44
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	97.43
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.43
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	97.42
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	97.42
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	97.42
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	97.42
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.42
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	97.41
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.53
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.4
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.4
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.4
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	97.39
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	97.39
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	97.39
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.39
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.38
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	97.37
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.37
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	97.37
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	97.37
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	97.36
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	97.36
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.35
3rih_A	293	Short chain dehydrogenase or reductase; structural	97.35
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	97.35
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	97.34
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	97.34
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	97.34
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	97.34
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.34
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.33
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	97.33
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.33
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.33
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	97.33
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.33
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.32
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.32
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.32
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	97.32
1xhl_A	297	Short-chain dehydrogenase/reductase family member	97.31
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	97.31
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.3
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	97.3
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.29
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	97.29
1xkq_A	280	Short-chain reductase family member (5D234); parra	97.28
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.28
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.27
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	97.27
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.25
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	97.25
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	97.25
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	97.24
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	97.24
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	97.23
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.23
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.23
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	97.23
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	97.23
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.23
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	97.22
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.22
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.21
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.21
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	97.2
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.2
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	97.2
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	97.2
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.2
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	97.2
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.19
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	97.19
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	97.19
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.19
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	97.17
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.17
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	97.17
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	97.16
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	97.16
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.15
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.14
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	97.13
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.13
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.12
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.12
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.11
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.11
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	97.11
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	97.11
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.11
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	97.1
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	97.1
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	97.1
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	97.1
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	97.1
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	97.09
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.08
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	97.08
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	97.08
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.08
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.07
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	97.07
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.06
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	97.05
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.05
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.04
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.04
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.04
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.04
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.03
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.03
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	97.03
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.02
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.01
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.01
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.01
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	97.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.0
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.99
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.98
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	96.98
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.98
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.97
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.96
4e4y_A	244	Short chain dehydrogenase family protein; structur	96.96
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.96
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	96.96
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.95
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.95
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.94
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	96.94
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.94
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	96.93
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	96.92
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.91
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	96.91
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	96.9
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.9
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	96.89
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	96.87
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.86
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.86
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	96.86
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.85
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	96.85
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.84
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.84
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.84
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.82
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.81
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.81
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.8
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.8
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	96.79
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.78
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.77
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.77
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.77
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.76
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.76

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=100.00  E-value=2.4e-56  Score=399.75  Aligned_cols=234  Identities=61%  Similarity=0.949  Sum_probs=209.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCC-ChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+||||+|+||+++++.|..+ ++.+||+|+|+++ .+|+++||.|...+..+..+.+ ++.+++++|||+||+++|.
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~-~~~~~~~~~aDivii~ag~   79 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSG-EDATPALEGADVVLISAGV   79 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECS-SCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecC-CCcHHHhCCCCEEEEeCCC
Confidence            69999996699999999999886 7888999999987 4789999999755434443322 3446899999999999999


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHH
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA  178 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la  178 (258)
                      |++|||+|+|++..|+++++++++.|.++||+++++++|||+|++|++++++++.++-+|++||+|+|.||++|++++||
T Consensus        80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd~~t~~a~~~~k~sg~~p~~rv~G~~~LD~~R~~~~la  159 (312)
T 3hhp_A           80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVA  159 (312)
T ss_dssp             SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEecCcchhHHHHHHHHHHHcCCCCcceEEEEechhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998888876666655523999999999999999999999


Q ss_pred             HHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHh
Q 025075          179 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       179 ~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +++|+++++|+++|||||+|+|+||+||++ ...+++++++++|.++|+++|++|+++|.|+||++||+|.|++++++
T Consensus       160 ~~lgv~~~~v~~~V~G~Hsg~t~vp~~S~~-~g~~~~~~~~~~i~~~v~~~g~eIi~~k~g~gst~~s~a~a~~~~~~  236 (312)
T 3hhp_A          160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL  236 (312)
T ss_dssp             HHHTCCGGGCCCCEEECSSGGGEEECGGGC-TTCCCCHHHHHHHHHHHHTHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHhCcChhHcceeEEeccCCCceeeecccC-CCCCCCHHHHHHHHHHHHhhhHHHHhhccCCCCchhHHHHHHHHHHH
Confidence            999999999999999999889999999998 44468888999999999999999999987889999999999999975

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=100.00  E-value=2.9e-54  Score=387.20  Aligned_cols=237  Identities=62%  Similarity=0.982  Sum_probs=219.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+||||+|+||+++++.|+..+++++|+|+|+++.++.++||.|...+..+..+.+++|++++++|||+||+++|.|+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            69999997799999999999998888899999998877888999998765455544344678889999999999999999


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHH
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  180 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~  180 (258)
                      ++|++|.|++.+|+++++++++.|.+++|+++++++|||+|.+|+++++++++.+++|++||+|+|.||++|+++++|++
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv~~~~~i~~~~~~~~~~~p~~rvig~t~Ld~~r~~~~la~~  160 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAEL  160 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEECCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCcchhHHHHHHHHHHcCCCCcceEEEeecccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHhc
Q 025075          181 LGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       181 l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +|++|++|+++|||||+|++++|+||+++|..++++++++++.++++++|++|++.|.|+|+++||+|.++++++++
T Consensus       161 l~v~~~~v~~~v~G~H~G~~~~p~~s~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k~~~g~t~~~~a~a~~~~~~a  237 (314)
T 1mld_A          161 KGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFS  237 (314)
T ss_dssp             TTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCHHHHHHHHHHHHH
T ss_pred             hCcChHhEEEEEccCCCCCcEeeecccCCCcccCCHHHHHHHHHHHHHHHHHHHhhhcCCCCcchhHHHHHHHHHHH
Confidence            99999999999999997789999999999876788888999999999999999999878899999999999999863

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=100.00  E-value=2.5e-54  Score=389.20  Aligned_cols=230  Identities=24%  Similarity=0.366  Sum_probs=202.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC-CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +.+++||+|||| |.||+++++.|+.++++++|+|+|++++  ++.++||.|.. +...... ..++|+ ++++|||+||
T Consensus        16 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i-~~~~d~-~~~~~aDiVv   92 (331)
T 4aj2_A           16 QVPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKI-VSSKDY-SVTANSKLVI   92 (331)
T ss_dssp             -CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEE-EECSSG-GGGTTEEEEE
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeE-EEcCCH-HHhCCCCEEE
Confidence            456689999998 9999999999999999999999999875  78999999985 2212222 234566 5799999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R  172 (258)
                      +++|.|++|||+|+|++.+|+++++++++.|+++||+++++++|||+|    ++++++++.+++|++|+||+ |.||++|
T Consensus        93 i~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNPvd----i~t~~~~k~sg~p~~rviG~gt~LD~~R  168 (331)
T 4aj2_A           93 ITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNPVD----ILTYVAWKISGFPKNRVIGSGCNLDSAR  168 (331)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             EccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH----HHHHHHHHHhCCCHHHEEeeccccHHHH
Confidence            999999999999999999999999999999999999999999999999    55566777778999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC------------CCCHHHHHHHHHHHHhhHHHHhhhhCCC
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGA  240 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~  240 (258)
                      +++++|+++|++|++|+++||||| |+|+||+||++++..            .+++++|++|.++++++|++|+++|   
T Consensus       169 ~~~~la~~lgv~~~~V~~~ViGeH-G~s~vp~~S~~~v~G~p~~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---  244 (331)
T 4aj2_A          169 FRYLMGERLGVHPLSCHGWVLGEH-GDSSVPVWSGVNVAGVSLKSLNPQLGTDADKEQWKDVHKQVVDSAYEVIKLK---  244 (331)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSTTCTTCTHHHHHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHhCCCHHHCEEeEEecC-CCceeEeeecCeECCEEHHHHHhhccCCCCHHHHHHHHHHHHHhHHHHhhcC---
Confidence            999999999999999999999999 789999999997421            2456779999999999999999987   


Q ss_pred             CchHHHHHHHHHHhHhc
Q 025075          241 GSATLSMRLNLRMHASV  257 (258)
Q Consensus       241 ~~~~~s~a~a~~~~~~~  257 (258)
                      |+++||+|.++++++++
T Consensus       245 g~t~~a~a~a~a~~~~a  261 (331)
T 4aj2_A          245 GYTSWAIGLSVADLAES  261 (331)
T ss_dssp             SSCCHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHH
Confidence            57899999999999864

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=100.00  E-value=5.3e-54  Score=381.17  Aligned_cols=221  Identities=23%  Similarity=0.383  Sum_probs=193.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++.  +|+++||+|+.+  +...+. .++.|+ ++++|||+||++|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i-~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEE-EEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeE-ecCCCH-HHhCCCCEEEEec
Confidence            79999997 9999999999999999999999999874  799999999753  212222 234454 6899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.||+|||+|+|++..|++|+++++++|.++||+++++++|||+|+|||    ++++.+++|++|+||+ |.|||+||++
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsNPvd~~t~----i~~k~sg~p~~rvig~gT~LDs~R~~~  153 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMDVMTY----IMWKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHHHHHH----HHHHHSSCCTTSEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecCcchhhHH----hhHHHcCCChhhEEEeeeEEeHHHHHH
Confidence            9999999999999999999999999999999999999999999995554    5667788999999999 8999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA  255 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~  255 (258)
                      +|++++++++.  +++|||+| |+|++|+||++++..   ..+++++.++++++|++|++.|   |+++||+|.++++++
T Consensus       154 ~l~~~~~~~~~--~~~V~G~H-Gdt~vp~~S~~~v~g---~~~~~~i~~~~~~~g~eIi~~k---Gst~~a~a~a~~~~~  224 (294)
T 2x0j_A          154 RLYNAGARNIR--RAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHHHTTCEEEC--CCCEEBCS-STTCEECGGGCCEES---CCCHHHHHHHHHTHHHHHHHHH---SSCCHHHHHHHHHHH
T ss_pred             HHhhcccCCcc--eeEEEecC-CCcEEEeeeccCCCC---chhHHHHHHHHhhhheEEEecC---cccchhHHHHHHHHH
Confidence            99999887654  58999999 799999999998533   2357788999999999999976   689999999999998


Q ss_pred             hc
Q 025075          256 SV  257 (258)
Q Consensus       256 ~~  257 (258)
                      ++
T Consensus       225 ~a  226 (294)
T 2x0j_A          225 KA  226 (294)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=100.00  E-value=1.2e-52  Score=378.56  Aligned_cols=240  Identities=90%  Similarity=1.329  Sum_probs=217.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++|||+||||+|+||++++..|+.++++.+|+|+|+++.++.++||.|...+..+..+.+++|++++++|||+||+++
T Consensus         5 ~~~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~a   84 (326)
T 1smk_A            5 GAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPA   84 (326)
T ss_dssp             ---CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcC
Confidence            34568999999669999999999998887789999999877778899998755434544334557888999999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTF  176 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~  176 (258)
                      |.|+++|++|.|++..|+++++++++.+.+++|+++++++|||+|++|+++++++++.+++|++||||+|.||++|++++
T Consensus        85 g~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~t~~~~~~~~~p~~rviG~~~Ld~~r~~~~  164 (326)
T 1smk_A           85 GVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTF  164 (326)
T ss_dssp             CCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHHHHHTCCCTTSEEECCHHHHHHHHHH
T ss_pred             CcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCchHHHHHHHHHHHHHccCCCcccEEEEeehHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhHh
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +|+++|++|++|+++|||||+|++++|+||++++..++++++++++.++++++|++|++.|.|+|+++||+|.+++++++
T Consensus       165 la~~l~v~~~~v~~~v~G~H~G~~~~p~~s~~~v~~~~~~~~~~~~~~~v~~~g~eii~~k~~~gs~~~~~a~a~~~~~~  244 (326)
T 1smk_A          165 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFAD  244 (326)
T ss_dssp             HHHHHTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHHHhCcChhheEEEEecccCCceEEEecccCeecCcCCHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999889999999999876668888899999999999999999886789999999999999965

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=2.9e-53  Score=381.58  Aligned_cols=227  Identities=24%  Similarity=0.370  Sum_probs=185.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      .++||+|||| |.||+++++.|+..+++++|+|+|++++  +|.++||.|.... ..+....  .+ +++++|||+||++
T Consensus         8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~--~~-~~a~~~aDiVvi~   83 (326)
T 3vku_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEE--Cc-HHHhcCCCEEEEC
Confidence            3479999998 9999999999999999999999999875  7889999998531 2333332  33 4789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|++||++|+|++.+|+++++++++.|.++||+++++++|||+|    ++++++++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPvd----i~t~~~~k~~g~p~~rviG~gt~LD~~R~~  159 (326)
T 3vku_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC----------------CHHHHHHHHHTTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCchH----HHHHHHHHhcCCCHHHeeeecccCcHHHHH
Confidence            9999999999999999999999999999999999999999999999    56666777788999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C-------CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~-------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~  243 (258)
                      +++|+++|++|++|+++||||| |+|+||+||++++..    +       ++++++++|.++|+++|++|+++|   |++
T Consensus       160 ~~la~~lgv~~~~V~~~ViGeH-Gdt~vp~~S~a~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~t  235 (326)
T 3vku_A          160 QSIAKMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRNKAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTSCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCCHHHCeEEEEcCC-CCeeEEeeeccccCCEEHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcC---CCc
Confidence            9999999999999999999999 789999999998531    1       156678999999999999999976   689


Q ss_pred             HHHHHHHHHHhHhc
Q 025075          244 TLSMRLNLRMHASV  257 (258)
Q Consensus       244 ~~s~a~a~~~~~~~  257 (258)
                      +||+|.++++|+++
T Consensus       236 ~~a~a~a~~~~~~a  249 (326)
T 3vku_A          236 FYGIATALARISKA  249 (326)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999864

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=100.00  E-value=4.8e-53  Score=380.20  Aligned_cols=231  Identities=33%  Similarity=0.518  Sum_probs=197.9

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC----CCeEEEEeCCCchHhhhCC
Q 025075           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT----GAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        15 ~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~   88 (258)
                      +|+++++||+|||| |.+|+++++.|+..++. +|+|+|++++  ++.++||.|...    +..+.   .++|+ ++++|
T Consensus         2 ~~~m~~~kI~viGa-G~vG~~~a~~l~~~~~~-~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~---~t~d~-~a~~~   75 (324)
T 3gvi_A            2 PGSMARNKIALIGS-GMIGGTLAHLAGLKELG-DVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFT---GANDY-AAIEG   75 (324)
T ss_dssp             ----CCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE---EESSG-GGGTT
T ss_pred             CCCCcCCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEeCCchhHHHHHHHHhchhhhcCCCCEEE---EeCCH-HHHCC
Confidence            46677889999998 99999999999999986 9999999986  578899998742    22333   23565 79999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-e
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-M  167 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~  167 (258)
                      ||+||+++|.|++||++|.|++.+|+++++++++.|+++||+++++++|||+|.+|    +++++.+++|++|++|+| .
T Consensus        76 aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t----~~~~k~sg~p~~rviG~~~~  151 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMV----WALQKFSGLPAHKVVGMAGV  151 (324)
T ss_dssp             CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHH----HHHHHHHCCCGGGEEECCHH
T ss_pred             CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHH----HHHHHhcCCCHHHEEeecCc
Confidence            99999999999999999999999999999999999999999999999999999544    456677789999999997 8


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC------CCHHHHHHHHHHHHhhHHHHhhhh
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS------FTQEETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~------~~~~~~~~i~~~v~~~~~~i~~~k  237 (258)
                      ||++|+++++|+++|+++++|+++||||| |+|+||+||++++.    .+      +++++++++.++++++|++|++.|
T Consensus       152 LD~~R~~~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~  230 (324)
T 3gvi_A          152 LDSARFRYFLSEEFNVSVEDVTVFVLGGH-GDSMVPLARYSTVAGIPLPDLVKMGWTSQDKLDKIIQRTRDGGAEIVGLL  230 (324)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhCcCHHHCeEEEEcCC-CCceeeehhhCeECCEEHHHhhhccCCCHHHHHHHHHHHHHhHHHHHHhc
Confidence            99999999999999999999999999999 78999999999842    11      367789999999999999999998


Q ss_pred             CCCCchHHHHHHHHHHhHhc
Q 025075          238 AGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~~  257 (258)
                       |+||++||+|.|+++|+++
T Consensus       231 -gkgsa~~~~a~a~~~~~~a  249 (324)
T 3gvi_A          231 -KTGSAFYAPAASAIQMAES  249 (324)
T ss_dssp             -SSCCCCHHHHHHHHHHHHH
T ss_pred             -CCCcHHHHHHHHHHHHHHH
Confidence             7899999999999999864

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=100.00  E-value=2.2e-53  Score=380.89  Aligned_cols=227  Identities=27%  Similarity=0.438  Sum_probs=193.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||| |.||+++++.|+..+++++|+|+|++++  +++++||.|..++  ...+.. ++.+ +++++|||+||+++
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~-~~~~-~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVT-GTND-YGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEE-EESS-SGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEE-ECCC-HHHhCCCCEEEECC
Confidence            69999998 9999999999999999899999999986  6889999997531  122222 1233 57999999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R~~~  175 (258)
                      |.|++||++|+|++..|+++++++++.|.++||+++++++|||+|.+|+    ++++.+++|++||+|+| .||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~----~~~k~~g~p~~rviG~~t~LD~~R~~~  153 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTY----VAYEASGFPTNRVMGMAGVLDTGRFRS  153 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHH----HHHHHHTCCGGGEEECCHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHH----HHHHhcCCChHHEEeecCchHHHHHHH
Confidence            9999999999999999999999999999999999999999999996555    44556679999999996 999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLN  250 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a  250 (258)
                      ++|+++|++|++|+++||||| |+|+||+||++++.    .+ ++++++++|.++++++|++|+++| |+ |++||+|.+
T Consensus       154 ~la~~lgv~~~~v~~~ViG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eIi~~k-g~-sa~~a~a~a  230 (314)
T 3nep_X          154 FIAEELDVSVRDVQALLMGGH-GDTMVPLPRYTTVGGIPVPQLIDDARIEEIVERTKGAGGEIVDLM-GT-SAWYAPGAA  230 (314)
T ss_dssp             HHHHHHTCCGGGEEEEEEESS-GGGEEEEEEEEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SS-CCCHHHHHH
T ss_pred             HHHHHhCcCHHHeEEEEECCC-CCcEEeeeecCeECcEehhhccCHHHHHHHHHHHHHhHHHHHhcc-CC-cHHHHHHHH
Confidence            999999999999999999999 67999999998842    23 467789999999999999999998 55 999999999


Q ss_pred             HHHhHhc
Q 025075          251 LRMHASV  257 (258)
Q Consensus       251 ~~~~~~~  257 (258)
                      +++|+++
T Consensus       231 ~~~~~~a  237 (314)
T 3nep_X          231 AAEMTEA  237 (314)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=100.00  E-value=4.6e-53  Score=382.69  Aligned_cols=230  Identities=28%  Similarity=0.379  Sum_probs=195.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      ++++||+||||+|+||+++++.++..|+.+||+|+|++++  ++.++||.|..++ ..+.   .++|++++++|||+||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~---~t~d~~~al~dADvVvi   82 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLT---FTSDIKEALTDAKYIVS   82 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCE---EESCHHHHHTTEEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceE---EcCCHHHHhCCCCEEEE
Confidence            3467999999779999999999999998889999999875  7889999998643 2333   24577889999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcE-EEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT-VNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~-viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~  173 (258)
                      ++|.|++||++|+|++..|+++++++++.+.++||+++ ++++|||+|++|+    ++++.+++|++||+|+|.||++|+
T Consensus        83 taG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsNPvd~~t~----i~~k~sg~p~~rv~g~t~LDs~R~  158 (343)
T 3fi9_A           83 SGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFNPADITGL----VTLIYSGLKPSQVTTLAGLDSTRL  158 (343)
T ss_dssp             CCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSSSHHHHHH----HHHHHHTCCGGGEEEECCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCchHHHHH----HHHHHcCCCcceEEEecCcHHHHH
Confidence            99999999999999999999999999999999999996 8999999996555    445555799999999999999999


Q ss_pred             HHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCC----CCC------CCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          174 NTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKP----PCS------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~----~~~------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      ++++|+++|++|++|+ ++||||| |+++||+||++++    +.+      +++++|++|.++|+++|++|+++|+  .+
T Consensus       159 ~~~la~~l~v~~~~v~~~~ViGeH-gds~vp~~S~a~v~G~pl~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~kg--~s  235 (343)
T 3fi9_A          159 QSELAKHFGIKQSLVTNTRTYGGH-GEQMAVFASTAKVNGTPLTDLIGTDKLTNEQWAELKQRVVKGGANIIKLRG--RS  235 (343)
T ss_dssp             HHHHHHHHTSCGGGEECCCEEESS-GGGEEECGGGCEETTEEGGGTTTBTTBCHHHHHHHHHHHHTHHHHHHHHHS--SC
T ss_pred             HHHHHHHhCcCHHHcccceEEEcC-CCceeeeeecceECCEEhhHhccccCCCHHHHHHHHHHHHhhhHHHHHccC--CC
Confidence            9999999999999997 8999999 6899999999873    222      4678899999999999999999983  35


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      +++|+|.++++++++
T Consensus       236 s~~s~A~a~~~~~~a  250 (343)
T 3fi9_A          236 SFQSPSYVSIEMIRA  250 (343)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             cHHhHHHHHHHHHHH
Confidence            678999999999864

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=100.00  E-value=2.4e-52  Score=371.10  Aligned_cols=221  Identities=23%  Similarity=0.377  Sum_probs=196.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||| |.+|+++++.|+..+++++|+|+|++++  +++++|+.|..  ++...+. ..++| +++++|||+||+++
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i-~~t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEE-EEESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEE-EEeCC-HHHhCCCCEEEECC
Confidence            69999998 9999999999999999899999999885  56788998875  2222222 22456 68999999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.|++||++|.|++.+|+++++++++.|.++||+++++++|||+|    ++++++++.+++|++||||+ |.||++|+++
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~~~  153 (294)
T 1oju_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGMGNQLDSQRLKE  153 (294)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEECSHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcch----HHHHHHHHhcCCCHHHEeecccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999    55566777888999999999 8999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHhH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA  255 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~~  255 (258)
                      ++| ++|++|++ +++||||| |+|+||+||++++.. .+  ++++|.++++++|++|+++|   |+++||+|.++++|+
T Consensus       154 ~la-~l~v~~~~-~~~V~G~H-g~t~vp~~s~~~v~g-~~--~~~~~~~~v~~~g~eii~~k---G~t~~~~a~a~~~~~  224 (294)
T 1oju_A          154 RLY-NAGARNIR-RAWIIGEH-GDSMFVAKSLADFDG-EV--DWEAVENDVRFVAAEVIKRK---GATIFGPAVAIYRMV  224 (294)
T ss_dssp             HHH-HTTCBSCC-CCCEEBCS-STTCEECGGGCCCBS-CC--CHHHHHHHHHTTHHHHHHHH---SSCCHHHHHHHHHHH
T ss_pred             HHH-HhCCCccC-ceEEEecC-CCceeeecccceECC-cC--hHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHHHH
Confidence            999 99999999 99999999 889999999998632 22  68899999999999999987   589999999999998


Q ss_pred             hc
Q 025075          256 SV  257 (258)
Q Consensus       256 ~~  257 (258)
                      ++
T Consensus       225 ~a  226 (294)
T 1oju_A          225 KA  226 (294)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=100.00  E-value=1e-52  Score=378.34  Aligned_cols=227  Identities=25%  Similarity=0.348  Sum_probs=201.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|++++  ++.++||.|....  ..++..  +.+ +++++|||+||+
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~--~~~-~~a~~~aDvVvi   79 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTS--YGT-YEDCKDADIVCI   79 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEE--EEC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEE--eCc-HHHhCCCCEEEE
Confidence            4579999998 9999999999999999899999999875  6889999997421  233433  234 478999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      ++|.|++||++|.|++..|+++++++++.+.++||+++++++|||+|    ++++++++.+++|++||||+ |.||++|+
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd----~~t~~~~k~~g~p~~rviG~gt~LD~~R~  155 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVD----ILTYATWKFSGLPKERVIGSGTTLDSARF  155 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHH
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHH----HHHHHHHHhcCCCHHHEEeeccccHHHHH
Confidence            99999999999999999999999999999999999999999999999    55566667778999999999 99999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C-------CCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~-------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      ++++|+++|++|++|+++||||| |+|+||+||++++..    +       ++++++++|.++|+++|++|+++|   |+
T Consensus       156 ~~~la~~lgv~~~~V~~~V~GeH-G~t~vp~~S~~~v~g~p~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~k---G~  231 (326)
T 3pqe_A          156 RFMLSEYFGAAPQNVCAHIIGEH-GDTELPVWSHANVGGVPVSELVEKNDAYKQEELDQIVDDVKNAAYHIIEKK---GA  231 (326)
T ss_dssp             HHHHHHHHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHceeeeeecC-CCceeeeeeeeeECCEEHHHHhhcccCCCHHHHHHHHHHHHhhhheeeeCC---CC
Confidence            99999999999999999999999 889999999998431    1       256778999999999999999976   68


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      ++||+|.|+++|+++
T Consensus       232 t~~a~a~a~~~~~~a  246 (326)
T 3pqe_A          232 TYYGVAMSLARITKA  246 (326)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999999999999864

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=100.00  E-value=3.5e-52  Score=376.76  Aligned_cols=242  Identities=26%  Similarity=0.359  Sum_probs=196.6

Q ss_pred             HHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeC
Q 025075            8 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLG   78 (258)
Q Consensus         8 ~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~   78 (258)
                      .+++++.++++++.||+|+||+|+||++++++|++.++++     ||+|||+++.    +|.++||+|+.++....... 
T Consensus        12 ~~~~~~~~~s~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~-   90 (345)
T 4h7p_A           12 LEAQTQGPGSMSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVV-   90 (345)
T ss_dssp             ----------CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEE-
T ss_pred             ccccccCCCCCCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEE-
Confidence            3567788888888899999988999999999999888765     9999999874    58899999998765555443 


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ++|.+++++|||+||+++|.||+|||+|+|++..|++|++++++.|.+++ |+++++++|||+|+|++++   +++.+++
T Consensus        91 ~~~~~~a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~~~i~---~~~~~g~  167 (345)
T 4h7p_A           91 TADPRVAFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTNALIL---LKSAQGK  167 (345)
T ss_dssp             ESCHHHHTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHHTTTC
T ss_pred             cCChHHHhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchHHHHH---HHHccCC
Confidence            45678999999999999999999999999999999999999999999997 7899999999999777653   3445567


Q ss_pred             CCCcEEEE-eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCCC----CC-CCHHHH-HHHHHHHHhh
Q 025075          158 DPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----CS-FTQEET-EYLTNRIQNG  229 (258)
Q Consensus       158 ~~~kviG~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~-~~i~~~v~~~  229 (258)
                      |+.|+||. |.||++|++++||+++|++|++|+ .+|||+| |+|+||+||++++.    .+ ++++.+ +++.++++++
T Consensus       168 ~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~H-G~t~vp~~s~a~v~g~~~~~~~~~~~~~~~~~~~v~~~  246 (345)
T 4h7p_A          168 LNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNH-SSTQVPDTDSAVIGTTPAREAIKDDALDDDFVQVVRGR  246 (345)
T ss_dssp             SCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCS-STTCEEECTTCEETTEEGGGGCCC------HHHHHHHH
T ss_pred             CCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCC-CCeEEeeeccceECCccHHHhcchhhHHHHHHHHHHhh
Confidence            76666655 999999999999999999999998 5688999 78999999999843    22 333333 5799999999


Q ss_pred             HHHHhhhhCCCCchHHHHHHHHHHhHh
Q 025075          230 GTEVVEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       230 ~~~i~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      |++|++.|+  +|++||+|.+++++++
T Consensus       247 g~eIi~~kg--~ss~~s~a~a~~~~~~  271 (345)
T 4h7p_A          247 GAEIIQLRG--LSSAMSAAKAAVDHVH  271 (345)
T ss_dssp             HHHHHHHHS--SCCCHHHHHHHHHHHH
T ss_pred             hhhhhhcCC--CcchhhHHHHHHHHHH
Confidence            999999983  5788999999999876

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=100.00  E-value=9.9e-53  Score=377.96  Aligned_cols=228  Identities=35%  Similarity=0.535  Sum_probs=203.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC----CCeEEEEeCCCchHhhhCCCCE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT----GAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ++++||+|||+ |.||+++++.|+..++. +|+|+|++++  ++.++||.|...    +..+.   .++|+ ++++|||+
T Consensus         3 m~~~kI~iiGa-G~vG~~~a~~l~~~~~~-~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~---~t~d~-~a~~~aDv   76 (321)
T 3p7m_A            3 MARKKITLVGA-GNIGGTLAHLALIKQLG-DVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVR---GTNDY-KDLENSDV   76 (321)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE---EESCG-GGGTTCSE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEE---EcCCH-HHHCCCCE
Confidence            55689999997 99999999999999987 9999999986  578899999752    22333   23454 79999999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccH
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDV  170 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds  170 (258)
                      ||+++|.|++||++|.|++.+|+++++++++.|.++||+++++++|||+|.    +++++++.+++|++||+|+| .||+
T Consensus        77 VIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~----~t~~~~k~sg~p~~rviG~~~~LD~  152 (321)
T 3p7m_A           77 VIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDI----MVNMLQKFSGVPDNKIVGMAGVLDS  152 (321)
T ss_dssp             EEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH----HHHHHHHHHCCCGGGEEEECHHHHH
T ss_pred             EEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHH----HHHHHHHhcCCCHHHEEeeccchHH
Confidence            999999999999999999999999999999999999999999999999994    55566777789999999997 9999


Q ss_pred             HHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C------CCHHHHHHHHHHHHhhHHHHhhhhCCC
Q 025075          171 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S------FTQEETEYLTNRIQNGGTEVVEAKAGA  240 (258)
Q Consensus       171 ~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~------~~~~~~~~i~~~v~~~~~~i~~~k~g~  240 (258)
                      +|+++++|+++|++|++|+++||||| |+|++|+||++++..    +      +++++++++.++++++|++|++.| |+
T Consensus       153 ~R~~~~la~~l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~~-g~  230 (321)
T 3p7m_A          153 ARFRTFLADELNVSVQQVQAYVMGGH-GDTMVPLTKMSNVAGVSLEQLVKEGKLKQERLDAIVSRTRSGGGEIVALL-KT  230 (321)
T ss_dssp             HHHHHHHHHHHTCCGGGEECCEEECS-GGGEEECTTTCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHhCcCHHHceEeeecCc-CCceeeeeeeceECCEehhhhccccCCCHHHHHHHHHHHHhhhHHHHHhc-CC
Confidence            99999999999999999999999999 899999999998421    1      367789999999999999999998 78


Q ss_pred             CchHHHHHHHHHHhHhc
Q 025075          241 GSATLSMRLNLRMHASV  257 (258)
Q Consensus       241 ~~~~~s~a~a~~~~~~~  257 (258)
                      ||++||+|.++++++++
T Consensus       231 gsa~~~~a~a~~~~~~a  247 (321)
T 3p7m_A          231 GSAYYAPAAAGIQMAES  247 (321)
T ss_dssp             SCCCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHH
Confidence            99999999999999863

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=100.00  E-value=5.9e-52  Score=371.89  Aligned_cols=227  Identities=31%  Similarity=0.483  Sum_probs=200.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--C--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T--PGVTADISHMD----TGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~--~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      +++||+|||+ |.+|+++++.|+..++ ++|+|+|+++  .  ++.++|+.|..    ....+.   .++| +++++|||
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~-~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~---~t~d-~~a~~~aD   80 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKEL-ADVVLVDIPQLENPTKGKALDMLEASPVQGFDANII---GTSD-YADTADSD   80 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEE---EESC-GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEE---EcCC-HHHhCCCC
Confidence            3469999998 9999999999999998 8999999983  2  67889998874    122333   2345 47899999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eecc
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  169 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~ld  169 (258)
                      +||+++|.|++||++|.|++.+|+++++++++.+.++||+++++++|||+|.+|+    ++++.+++|++|++|+ |.||
T Consensus        81 vVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~----~~~k~sg~p~~rviG~gt~LD  156 (315)
T 3tl2_A           81 VVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTY----SVFKEAGFPKERVIGQSGVLD  156 (315)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHH----HHHHHHCCCGGGEEECCHHHH
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHH----HHHHhcCCChHHEEeeccCcH
Confidence            9999999999999999999999999999999999999999999999999996555    4456667999999999 9999


Q ss_pred             HHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          170 VVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      ++|+++++|+++|+++++|+++||||| |+|+||+||++++.    .+ ++++++++|.++++++|++|++.+ ||||++
T Consensus       157 ~~R~~~~la~~lgv~~~~v~~~viG~H-g~t~vp~~S~~~v~g~p~~~~~~~~~~~~i~~~v~~~g~eii~~~-~kgst~  234 (315)
T 3tl2_A          157 TARFRTFIAQELNLSVKDITGFVLGGH-GDDMVPLVRYSYAGGIPLETLIPKERLEAIVERTRKGGGEIVGLL-GNGSAY  234 (315)
T ss_dssp             HHHHHHHHHHHHTCCGGGEECCEEBCS-GGGCEECGGGCEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSSCCC
T ss_pred             HHHHHHHHHHHhCcCHHHceeeEecCC-CCcceeecccCeECCEEHHHhCCHHHHHHHHHHHHHHHHHHHHhc-CCCcch
Confidence            999999999999999999999999999 78999999999842    23 577789999999999999999974 689999


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      ||+|.++++|+++
T Consensus       235 ~a~a~a~~~~~~a  247 (315)
T 3tl2_A          235 YAPAASLVEMTEA  247 (315)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999863

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=100.00  E-value=5e-52  Score=373.26  Aligned_cols=218  Identities=22%  Similarity=0.283  Sum_probs=192.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +.+||+|||+ |.||+++++.|+..+++++|+|+|++++  ++.++||.|... ....+ +..++|+ ++++|||+||++
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~-i~~t~d~-~~~~daDiVIit   96 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAK-IVSGKDY-SVSAGSKLVVIT   96 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSE-EEEESSS-CSCSSCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCe-EEEcCCH-HHhCCCCEEEEe
Confidence            4579999998 9999999999999999999999999875  788999999742 21222 2234566 469999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|++||++|+|++.+|+++++++++.+.+++|+++++++|||+|.    +++++++.+++|++||||+ |.||++|++
T Consensus        97 aG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNPvdi----~t~~~~k~sg~p~~rViG~gt~LDs~R~~  172 (330)
T 3ldh_A           97 AGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPELGTD----KNKQDWKLSGLPMHRIIGSGCNLDSARFR  172 (330)
T ss_dssp             CSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH----HHHHHHHHHCCCGGGEECCTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCccHH----HHHHHHHHhCCCHHHeecccCchhHHHHH
Confidence            99999999999999999999999999999999999999999999995    4555666668999999999 799999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHH-HHHHHHHHhhHHHHhhhhCCCCchHHHHHH----
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET-EYLTNRIQNGGTEVVEAKAGAGSATLSMRL----  249 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~-~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~----  249 (258)
                      +++|+++|++|++|+++||||| |+|++|+||+          +| ++|.++++++|++|+++|   |+++||+|.    
T Consensus       173 ~~lA~~lgv~~~~V~~~V~G~H-g~t~vp~~S~----------~~~~~~~~~v~~~g~eii~~k---g~t~~a~a~~~~~  238 (330)
T 3ldh_A          173 YLMGERLGVHSCLVIGWVIGQH-GDSVPSVWSG----------MWDAKLHKDVVDSAYEVIKLK---GYTSWAIGLVVSN  238 (330)
T ss_dssp             HHHHHHHTSCTTTCCEEECSSS-STTCCEEEEE----------EEETTEEHHHHHCCCTTSTTC---HHHHHHHHHTTHH
T ss_pred             HHHHHHhCCCHHHeEEEEEcCC-CCceeeechh----------hHHHHHHHHHHHHHHHHHHcc---CCcceeeeeeccC
Confidence            9999999999999999999999 7899999998          23 688999999999999965   789999999    


Q ss_pred             -------------HHHHhHhc
Q 025075          250 -------------NLRMHASV  257 (258)
Q Consensus       250 -------------a~~~~~~~  257 (258)
                                   ++++|+++
T Consensus       239 ~~~~~~~~~~~~~a~~~~~~a  259 (330)
T 3ldh_A          239 PVDVLTYVAWKGCSVADLAQT  259 (330)
T ss_dssp             HHTTSSSCSCTHHHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHHHHHH
Confidence                         99998863

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=6.7e-50  Score=359.36  Aligned_cols=226  Identities=23%  Similarity=0.376  Sum_probs=190.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||| |+||+++++.|+..++++||+|+|++++  ++.++||.|... ...++...  .+ +++++|||+||+++
T Consensus         5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVii~a   80 (318)
T 1ez4_A            5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS--GE-YSDCKDADLVVITA   80 (318)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE--CC-GGGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEECC
Confidence            379999998 9999999999999999999999999875  677899998752 12333322  23 58899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHH
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~  175 (258)
                      |.|++||++|.|++.+|+++++++++.|++++|++|++++|||+|    ++++++++.+++|++||||+ |.||++|+++
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~  156 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGSGTSLDSSRLRV  156 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEeccccchHHHHHH
Confidence            999999999999999999999999999999999999999999999    56667777778999999999 9999999999


Q ss_pred             HHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHH
Q 025075          176 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (258)
Q Consensus       176 ~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~  245 (258)
                      ++|+++|++|++|+++||||| |++++|+||++++..          .+++++++++.++++++|++|++.|   |+++|
T Consensus       157 ~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~~  232 (318)
T 1ez4_A          157 ALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIINLK---GATFY  232 (318)
T ss_dssp             HHHHHHTCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHHhCcChhHEEEEEeccc-CCceEEEehhhcCCCeeHHHHhhccCCCHHHHHHHHHHHHHhhhhheeCC---CcchH
Confidence            999999999999999999999 789999999987421          2566778999999999999999976   67899


Q ss_pred             HHHHHHHHhHhc
Q 025075          246 SMRLNLRMHASV  257 (258)
Q Consensus       246 s~a~a~~~~~~~  257 (258)
                      ++|.++++++++
T Consensus       233 ~~a~a~~~~~~a  244 (318)
T 1ez4_A          233 GIGTALMRISKA  244 (318)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999763

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=100.00  E-value=2.7e-49  Score=360.32  Aligned_cols=217  Identities=22%  Similarity=0.262  Sum_probs=181.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE---EEEEeCCC--C----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV---LHLYDVVN--T----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~e---i~L~D~~~--~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +++||+||||+|+||+++++.|+.++++++   |.|+|.+.  .    +|+++||+|+.++..-.... +++.+++++||
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i-~~~~y~~~~da  109 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI-GIDPYEVFEDV  109 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE-ESCHHHHTTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEE-ecCCHHHhCCC
Confidence            457999999779999999999999999887   77766544  2    78999999997542222112 23446899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ee
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~  167 (258)
                      |+||+++|.||+|||+|+|++..|++|++++++.|.++ +|+++++++|||+|+|||    ++++.++++|+|+||+ |.
T Consensus       110 DvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~----ia~k~sg~~~~rvig~gT~  185 (375)
T 7mdh_A          110 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNAL----ICLKNAPDIPAKNFHALTR  185 (375)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH----HHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHH----HHHHHcCCCCccEEEeeeh
Confidence            99999999999999999999999999999999999998 799999999999995554    4566555666788888 89


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCC----CCCC-CHHH--HHHHHHHHHhhHHHHhhhhCC
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKP----PCSF-TQEE--TEYLTNRIQNGGTEVVEAKAG  239 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~----~~~~-~~~~--~~~i~~~v~~~~~~i~~~k~g  239 (258)
                      |||+||+++||+++|++|++|+. +||||| |+|+||+||++++    +.++ .+++  .++|.++|+++|++|+++| |
T Consensus       186 LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH-gdt~vp~~S~a~V~G~pl~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G  263 (375)
T 7mdh_A          186 LDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW-G  263 (375)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT-S
T ss_pred             HHHHHHHHHHHHHhCcChhhcccceEEecC-CCceeeeeecccCCCEEhhHhccchhhHHHHHHHHHHHHHHHHHHhc-C
Confidence            99999999999999999999995 899999 6899999999983    3333 2333  3789999999999999987 4


Q ss_pred             CCc
Q 025075          240 AGS  242 (258)
Q Consensus       240 ~~~  242 (258)
                      .+|
T Consensus       264 ~ts  266 (375)
T 7mdh_A          264 RSS  266 (375)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            443

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=100.00  E-value=1.2e-49  Score=358.78  Aligned_cols=227  Identities=24%  Similarity=0.384  Sum_probs=195.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +++||+|||| |+||+++++.|+..++++||+|+|++++  ++.++||.|... ...++...  .+ +++++|||+||++
T Consensus         8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   83 (326)
T 2zqz_A            8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS--AE-YSDAKDADLVVIT   83 (326)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGGGCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4479999998 9999999999999899999999999875  678899999752 12333322  23 5889999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|++||++|.|++.+|+++++++++.|+++||++|++++|||+|    ++++++++.+++|++||||+ |.||++|++
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~  159 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVD----ILTYATWKLSGFPKNRVVGSGTSLDTARFR  159 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHHHHHHHcCCCHHHEEEccccchHHHHH
Confidence            9999999999999999999999999999999999999999999999    55667777778999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC-----------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~  243 (258)
                      +++|+++|++|++|+++||||| |++++|+||++++..           .+++++++++.++++++|++|++.|   |++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~e~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k---G~t  235 (326)
T 2zqz_A          160 QSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEIIKLK---GAT  235 (326)
T ss_dssp             HHHHHHHTCCGGGEECCEEBSS-STTCEECGGGCEETTEEHHHHHHHCTTSCHHHHHHHHHHHHTHHHHHHHHH---SCC
T ss_pred             HHHHHHhCCChhheEEEEeccc-CCceEeehhhceECCEEHHHhhcccccCCHHHHHHHHHHHHHhHHHHHHcC---CCc
Confidence            9999999999999999999999 789999999987421           2566678999999999999999976   678


Q ss_pred             HHHHHHHHHHhHhc
Q 025075          244 TLSMRLNLRMHASV  257 (258)
Q Consensus       244 ~~s~a~a~~~~~~~  257 (258)
                      +|++|.++++++++
T Consensus       236 ~~~~a~aa~~~~~a  249 (326)
T 2zqz_A          236 FYGIATALARISKA  249 (326)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999763

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=100.00  E-value=2.4e-49  Score=354.62  Aligned_cols=225  Identities=24%  Similarity=0.388  Sum_probs=198.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||| |+||+++++.|+.+++++||+|+|++++  ++.++||.|... ...++...  ++ +++++|||+||+++|
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~--~~-~~a~~~aD~Vii~ag   76 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA--GS-YGDLEGARAVVLAAG   76 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE--CC-GGGGTTEEEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE--CC-HHHhCCCCEEEECCC
Confidence            69999998 9999999999999999999999999875  677899999752 12333322  24 578999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~  176 (258)
                      .|++||++|.|++.+|+++++++++.|++++|+++++++|||+|    ++++++++.+++|++||||+ |.||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~s~~p~~rviG~gt~LD~~R~~~~  152 (310)
T 2xxj_A           77 VAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVD----VMTQVAYALSGLPPGRVVGSGTILDTARFRAL  152 (310)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchH----HHHHHHHHHcCCCHHHEEecCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999    55566677778999999999 99999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC--------CCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS--------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~--------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      +|+++|+++++|+++|+||| |++++|+||++++.    .+        ++++.++++.++++++|++|++.|   |+++
T Consensus       153 la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~t~  228 (310)
T 2xxj_A          153 LAEYLRVAPQSVHAYVLGEH-GDSEVLVWSSAQVGGVPLLEFAEARGRALSPEDRARIDEGVRRAAYRIIEGK---GATY  228 (310)
T ss_dssp             HHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEEHHHHHHHTTCCCCHHHHHHHHHHHHTHHHHHHHHH---SCCC
T ss_pred             HHHHhCcCHHHeEEEEeccc-CCccccchhhccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHhhHHHHhcc---CCcH
Confidence            99999999999999999999 78999999998742    11        466778999999999999999976   6789


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      |++|.++++++++
T Consensus       229 ~~~a~a~~~~~~a  241 (310)
T 2xxj_A          229 YGIGAGLARLVRA  241 (310)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999763

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1e-48  Score=351.72  Aligned_cols=227  Identities=27%  Similarity=0.427  Sum_probs=189.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +++||+|||| |+||+++++.|+..++++||+|+|++++  ++.++||.|... ...++...  ++ +++++|||+||++
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~--~~-~~a~~~aDvVii~   81 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA--GD-YSDVKDCDVIVVT   81 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE--CC-HHHhCCCCEEEEc
Confidence            4579999998 9999999999999999999999999875  678899999752 12333322  34 5789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|+++|++|.|++.+|+++++++++.|.+++|+++++++|||+|    ++++++++.+++|++||||+ |.||++|++
T Consensus        82 ~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~~~~~~k~s~~p~~rviG~gt~Ld~~r~~  157 (318)
T 1y6j_A           82 AGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGSGTVLDSIRFR  157 (318)
T ss_dssp             CCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEECTTHHHHHHHH
T ss_pred             CCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHcCCCHHHEeccCCchHHHHHH
Confidence            9999999999999999999999999999999999999999999999    45556667778999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCCC--------CHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCSF--------TQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~~--------~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      +++|+++|+++++|+++||||| |++++|+||++++    +.++        ++++++++.++++++|++|++.|   |+
T Consensus       158 ~~la~~lgv~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  233 (318)
T 1y6j_A          158 YLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATIIKNK---GA  233 (318)
T ss_dssp             HHHHTTTTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHHHHHT---SC
T ss_pred             HHHHHHhCCCHHHeEEEEeccc-CCcEeeeehhceECCEEHHHHhhhhcccCCHHHHHHHHHHHHHhhHhHhhCC---Cc
Confidence            9999999999999999999999 7899999999873    3222        34447899999999999999965   67


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      ++|++|.++++++++
T Consensus       234 t~~~~a~a~~~~~~a  248 (318)
T 1y6j_A          234 TYYGIAVSINTIVET  248 (318)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            899999999999763

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=100.00  E-value=6.7e-49  Score=354.55  Aligned_cols=230  Identities=24%  Similarity=0.349  Sum_probs=192.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~e-----i~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +++||+|+||+|+||+++++.|+.++++++     |+|+|+++.    +|.++||.|+.++. +..+..+.+.+++++||
T Consensus         2 ~~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-~~~~~~~~~~~~~~~da   80 (333)
T 5mdh_A            2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-LKDVIATDKEEIAFKDL   80 (333)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-cCCEEEcCCcHHHhCCC
Confidence            468999999779999999999999999888     999999752    78999999975432 22233345667899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCc-EEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ee
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a-~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~  167 (258)
                      |+||+++|.|++||++|+|++..|+++++++++.+.+++|++ +++++|||+|+||    +++++.++++|+++||+ |.
T Consensus        81 DvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsNPvd~~t----~~~~~~~~~~p~~~ig~~t~  156 (333)
T 5mdh_A           81 DVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANTNC----LTASKSAPSIPKENFSCLTR  156 (333)
T ss_dssp             SEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH----HHHHHTCTTSCGGGEEECCH
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCchHHHH----HHHHHHcCCCCcCEEEEEEh
Confidence            999999999999999999999999999999999999999997 6999999999554    45566654444555765 99


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeEE-EEecCCCCceeeccCCCCC---CCCC------CHHH--HHHHHHHHHhhHHHHhh
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKP---PCSF------TQEE--TEYLTNRIQNGGTEVVE  235 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~~-v~G~h~g~~~vp~~S~~~~---~~~~------~~~~--~~~i~~~v~~~~~~i~~  235 (258)
                      ||++|+++++|+++|++|++|+++ ||||| |+|+||+||++++   ..++      .+++  .+++.++++++|++|++
T Consensus       157 LDs~R~~~~la~~l~v~~~~v~~~vV~GeH-gds~vp~~S~a~v~i~g~~~~~~~~~~~~~~~~~~~~~~v~~~g~eIi~  235 (333)
T 5mdh_A          157 LDHNRAKAQIALKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAVIK  235 (333)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcCHHHeeecEEEEcC-CCCEEEeeeccEeccCCeeccHHHhhccccccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987 59999 6799999999974   1112      1222  36899999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHhHh
Q 025075          236 AKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       236 ~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +|  ++++.||+|.++++++.
T Consensus       236 ~k--~~ssa~~~a~~~~~~~~  254 (333)
T 5mdh_A          236 AR--KLSSAMSAAKAICDHVR  254 (333)
T ss_dssp             HH--SSCCCHHHHHHHHHHHH
T ss_pred             cc--CchHHHHHHHHHHHHHH
Confidence            87  34678999999888765

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=100.00  E-value=9.6e-49  Score=351.80  Aligned_cols=228  Identities=25%  Similarity=0.382  Sum_probs=199.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++++||+|||| |+||+++++.|+.+++++||+|+|++++  ++.++|+.|...  ...++...  .+ +++++|||+||
T Consensus         4 m~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~--~~-~~a~~~aDvVv   79 (317)
T 3d0o_A            4 FKGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA--GE-YSDCHDADLVV   79 (317)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE--CC-GGGGTTCSEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe--CC-HHHhCCCCEEE
Confidence            45679999998 9999999999998888899999999874  567888888631  12333332  23 58899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R  172 (258)
                      +++|.|+++|++|.|++.+|+++++++++.|.+++|+++++++|||+|    ++++++++.+++|++|+||+ |.||++|
T Consensus        80 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~lD~~r  155 (317)
T 3d0o_A           80 ICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVD----ILAYATWKFSGLPKERVIGSGTILDSAR  155 (317)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHH----HHHHHHHHHhCCCHHHEEecCccccHHH
Confidence            999999999999999999999999999999999999999999999999    55667777778999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      +++++|+++|+++++|+++||||| |++++|+||++++..          .++++.++++.++++++|++|++.|   |+
T Consensus       156 ~~~~la~~l~v~~~~v~~~v~G~H-G~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  231 (317)
T 3d0o_A          156 FRLLLSEAFDVAPRSVDAQIIGEH-GDTELPVWSHANIAGQPLKTLLEQRPEGKAQIEQIFVQTRDAAYDIIQAK---GA  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGCBCCEEBCS-STTCEECTTTCEETTEEHHHHHHTSTTHHHHHHHHHHHHHTHHHHHHHHH---SC
T ss_pred             HHHHHHHHhCcChhhEEEEEEecC-CCCeeEeeeccccCCEEHHHHhhccCCCHHHHHHHHHHHHhhhhEEEeCC---CC
Confidence            999999999999999999999999 789999999987421          1455568999999999999999976   67


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      ++|++|.++++++++
T Consensus       232 ~~~~~a~a~~~~~~a  246 (317)
T 3d0o_A          232 TYYGVAMGLARITEA  246 (317)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             chHhHHHHHHHHHHH
Confidence            899999999999864

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=100.00  E-value=1.6e-48  Score=349.10  Aligned_cols=222  Identities=27%  Similarity=0.464  Sum_probs=197.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC----CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ||+|||| |+||+++++.|+..++ +||+|+|++++  ++.++|+.|..+    ...+.   .++|+ ++++|||+||++
T Consensus         1 KI~IiGa-G~vG~~~a~~l~~~~l-~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~---~t~d~-~a~~~aD~Vi~~   74 (308)
T 2d4a_B            1 MITILGA-GKVGMATAVMLMMRGY-DDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS---GSNSY-EDMRGSDIVLVT   74 (308)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC-SCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTCSEEEEC
T ss_pred             CEEEECc-CHHHHHHHHHHHhCCC-CEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE---ECCCH-HHhCCCCEEEEe
Confidence            7999998 9999999999988888 89999999985  677899988631    22343   23565 789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.|++||++|.|++.+|+++++++++.+++++|++++|++|||+|    ++++++++.+++||+||+|+ |.||++|++
T Consensus        75 ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~R~~  150 (308)
T 2d4a_B           75 AGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPVD----AMTYVMYKKTGFPRERVIGFSGILDSARMA  150 (308)
T ss_dssp             CSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchH----HHHHHHHHhcCCChhhEEEecccchHHHHH
Confidence            9999999999999999999999999999999999999999999999    55566777778999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCC-chHHHHH
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAG-SATLSMR  248 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~-~~~~s~a  248 (258)
                      +++|+++|+++++|+++|||+| |++++|+||++++.    .+ +++++++++.++++++|++|++.|   | |++||+|
T Consensus       151 ~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~s~~~~~a  226 (308)
T 2d4a_B          151 YYISQKLGVSFKSVNAIVLGMH-GQKMFPVPRLSSVGGVPLEHLMSKEEIEEVVSETVNAGAKITELR---GYSSNYGPA  226 (308)
T ss_dssp             HHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH---SSCCCHHHH
T ss_pred             HHHHHHhCcChhHeEEEEEecc-CCceeeeehhccCCCEEHHHHcCHHHHHHHHHHHHHhhHhhhhCC---CCccHHHHH
Confidence            9999999999999999999999 68999999998742    12 467789999999999999999976   5 8899999


Q ss_pred             HHHHHhHhc
Q 025075          249 LNLRMHASV  257 (258)
Q Consensus       249 ~a~~~~~~~  257 (258)
                      .++++++++
T Consensus       227 ~a~~~~~~a  235 (308)
T 2d4a_B          227 AGLVLTVEA  235 (308)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999763

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=100.00  E-value=1.1e-47  Score=342.83  Aligned_cols=226  Identities=24%  Similarity=0.356  Sum_probs=198.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~--~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++.  ++.++|+.|... ...++...  .+ +++++|||+||++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~--~~-~~a~~~aDvVi~~   77 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GG-YEDTAGSDVVVIT   77 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe--CC-HHHhCCCCEEEEc
Confidence            6999999669999999999998888889999999  653  466789988642 12333322  24 5789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.++++|++|.|++..|+++++++++.+++++|+++++++|||+|    ++++++++.+++|++|++|+ |.||++|++
T Consensus        78 ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~----~~~~~~~~~~~~p~~rviG~gt~Ld~~r~~  153 (303)
T 1o6z_A           78 AGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIGFGGRLDSARFR  153 (303)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEECCHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHHcCCCHHHeeecccchhHHHHH
Confidence            9999999999999999999999999999999999999999999999    56667788889999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC--CC-CHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHH
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC--SF-TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL  251 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~--~~-~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~  251 (258)
                      +++|+++|+++++|+++||||| |++++|+||++++..  ++ ++++++++.++++++|++|++.   +|+++||+|.++
T Consensus       154 ~~la~~l~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~p~~~~~~~~~~~~~~v~~~g~eii~~---kg~~~~~~a~a~  229 (303)
T 1o6z_A          154 YVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIER---KGATEWGPARGV  229 (303)
T ss_dssp             HHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTT---TSSCCHHHHHHH
T ss_pred             HHHHHHhCcCHHHeEEEEEeCC-CCccccCCcccccCCcCccCCHHHHHHHHHHHHHHhHHHHhc---CCChHHHHHHHH
Confidence            9999999999999999999999 789999999986210  34 7788999999999999999995   478999999999


Q ss_pred             HHhHhc
Q 025075          252 RMHASV  257 (258)
Q Consensus       252 ~~~~~~  257 (258)
                      ++++++
T Consensus       230 ~~~~~a  235 (303)
T 1o6z_A          230 AHMVEA  235 (303)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999763

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=100.00  E-value=8.5e-48  Score=344.51  Aligned_cols=226  Identities=27%  Similarity=0.451  Sum_probs=190.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC----CCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +|||+|||| |+||+++++.|+..|+++ |+|+|++++  ++.++|+.|...    ...+.   .++|+ ++++|||+||
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~---~t~d~-~a~~~aD~Vi   75 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGD-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVT---GTNNY-ADTANSDVIV   75 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSE-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEE---EESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCe-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEE---ECCCH-HHHCCCCEEE
Confidence            369999998 999999999999999765 999999885  577789988631    22333   23576 7899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R  172 (258)
                      +++|.|+++|++|.|++.+|+++++++++.+++++|+++++++|||+|    ++++++++.+++|++||+|+ |.||++|
T Consensus        76 ~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv~----~~t~~~~~~~~~~~~rviG~gt~LD~~r  151 (309)
T 1ur5_A           76 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLD----AMTYLAAEVSGFPKERVIGQAGVLDAAR  151 (309)
T ss_dssp             ECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHHHHHHH
T ss_pred             EcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCchH----HHHHHHHHHcCCCHHHEEECCcchHHHH
Confidence            999999999999999999999999999999999999999999999999    45566777778999999999 9999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHH
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM  247 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~  247 (258)
                      +++++|+++|+++++|+++|||+| |++++|+||++++    ..+ +++++++++.++++++|++|++. .++||++||+
T Consensus       152 ~~~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~eii~~-~~kgs~~~~~  229 (309)
T 1ur5_A          152 YRTFIAMEAGVSVEDVQAMLMGGH-GDEMVPLPRFSCISGIPVSEFIAPDRLAQIVERTRKGGGEIVNL-LKTGSAYYAP  229 (309)
T ss_dssp             HHHHHHHHHTCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHH-HSSCCCCHHH
T ss_pred             HHHHHHHHhCCChhheeEEEecCc-CCceeeeeecceeCCEeHHHHcCHhHHHHHHHHHHhhhHHhhhh-ccCCCcHHHH
Confidence            999999999999999999999999 6899999999873    223 47788999999999999999995 2457899999


Q ss_pred             HHHHHHhHhc
Q 025075          248 RLNLRMHASV  257 (258)
Q Consensus       248 a~a~~~~~~~  257 (258)
                      |.++++++++
T Consensus       230 a~a~~~~~~a  239 (309)
T 1ur5_A          230 AAATAQMVEA  239 (309)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999763

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=100.00  E-value=2.2e-47  Score=342.80  Aligned_cols=227  Identities=25%  Similarity=0.356  Sum_probs=197.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +++||+|||+ |.||+++++.|+..+++++|+|+|++++  ++.++|+.|....  ...+...  ++ +++++|||+||+
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~--~~-~~al~~aDvVii   80 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH--GD-YDDCRDADLVVI   80 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE--CC-GGGTTTCSEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc--Cc-HHHhCCCCEEEE
Confidence            4579999998 9999999999998888899999999874  5677899886431  1333332  23 478999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      ++|.++++|++|.|++.+|.++++++++.+++++|+++++++|||+|    ++++++++.+++|++||||+ |.||++|+
T Consensus        81 a~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv~----~~~~~~~~~s~~p~~rviG~gt~lD~~r~  156 (316)
T 1ldn_A           81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGSGTILDTARF  156 (316)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEECTTHHHHHHH
T ss_pred             cCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCchH----HHHHHHHHHhCCCHHHEEecccchHHHHH
Confidence            99999999999999999999999999999999999999999999999    55566677778999999999 99999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC-------CCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS-------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~-------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      ++++|+++|+++++|+++|||+| |++++|+||++++    +.+       +++++++++.++++++|++|++.|   |+
T Consensus       157 ~~~la~~l~v~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~  232 (316)
T 1ldn_A          157 RFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQIIEKK---GA  232 (316)
T ss_dssp             HHHHHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHHHHH---SC
T ss_pred             HHHHHHHhCCCHHHeEEEEeccc-CCceeeeehhccCCCEEHHHHhhccccCCHHHHHHHHHHHHHhHHHHHhcc---CC
Confidence            99999999999999999999999 7899999999873    222       345567999999999999999976   67


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      ++|++|.++++++++
T Consensus       233 ~~~~~a~a~~~~~~a  247 (316)
T 1ldn_A          233 TYYGIAMGLARVTRA  247 (316)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            899999999999864

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=100.00  E-value=1.3e-47  Score=342.20  Aligned_cols=220  Identities=19%  Similarity=0.269  Sum_probs=187.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +.+++||+|||| |.||+.+++.|+..+++++|+|+|++++ .+.++|+.|...+ .+..   ++|+ ++++|||+||++
T Consensus        11 ~~~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~-~i~~---t~d~-~~l~~aD~Vi~a   84 (303)
T 2i6t_A           11 NKTVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLP-NVEI---SKDL-SASAHSKVVIFT   84 (303)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCT-TEEE---ESCG-GGGTTCSEEEEC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCC-CeEE---eCCH-HHHCCCCEEEEc
Confidence            444579999998 9999999999999999999999999874 6778899885433 4443   3576 789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN  174 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~  174 (258)
                      +|.+ +||++|+|++.+|+++++++++.++++||+++++++|||+|    ++++++++.+++||+||+|+ |.||++|++
T Consensus        85 ag~~-~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~----~~t~~~~~~~~~p~~rviG~gt~Ld~~R~~  159 (303)
T 2i6t_A           85 VNSL-GSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE----IMTYVTWKLSTFPANRVIGIGCNLDSQRLQ  159 (303)
T ss_dssp             CCC-----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHHHHHH
T ss_pred             CCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH----HHHHHHHHhcCCCHHHeeCCCCCchHHHHH
Confidence            9996 79999999999999999999999999999999999999999    67777888888999999999 999999999


Q ss_pred             HHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHHHHHHHh
Q 025075          175 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH  254 (258)
Q Consensus       175 ~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a~a~~~~  254 (258)
                      +++|+++|+++++|+++|||+| |++++|+||+..+   +   ..+++.++++++|++|++.   +|+++||+|.+++++
T Consensus       160 ~~la~~lgv~~~~v~~~v~G~H-g~s~~p~~s~~~~---~---~~~~~~~~~~~~g~eii~~---kGst~~~~a~a~~~i  229 (303)
T 2i6t_A          160 YIITNVLKAQTSGKEVWVIGEQ-GEDKVLTWSGQEE---V---VSHTSQVQLSNRAMELLRV---KGQRSWSVGLSVADM  229 (303)
T ss_dssp             HHHHHTSCCTTGGGGEEEEBSC-SSSCEEEEBCSSC---C---CCHHHHHHHHHHHHTTSSS---CCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCChHHeEEEEecCC-CCCcccccccccc---c---cHHHHHHHHHHHHHHHHHc---cCchHHhHHHHHHHH
Confidence            9999999999999999999999 6899999999632   2   1256888899999999984   578999999999999


Q ss_pred             Hhc
Q 025075          255 ASV  257 (258)
Q Consensus       255 ~~~  257 (258)
                      +++
T Consensus       230 ~~a  232 (303)
T 2i6t_A          230 VDS  232 (303)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            763

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=100.00  E-value=2.8e-47  Score=341.70  Aligned_cols=228  Identities=26%  Similarity=0.440  Sum_probs=192.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCC--hhHHHHHhcCCC-C-CeEEEEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNT--PGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~--~~~--~g~~~dl~~~~~-~-~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      |||+||||+|++|+++++.|+.+++..|++|+|+  ++.  ++.++|+.|... . ..+.....+++++++++|||+||+
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            5999999999999999999998888889999999  653  567888887631 1 122322222236789999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      +||.|+++|++|.+++..|+++++++++.+++++ +++++++|||+|    ++++++++.+++|++|++|+ |.||++|+
T Consensus        81 ~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv~----~~t~~~~k~~~~p~~rviG~gt~LD~~r~  155 (313)
T 1hye_A           81 TSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPVD----VMTYKALVDSKFERNQVFGLGTHLDSLRF  155 (313)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSHH----HHHHHHHHHHCCCTTSEEECTTHHHHHHH
T ss_pred             CCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcHH----HHHHHHHHhhCcChhcEEEeCccHHHHHH
Confidence            9999999999999999999999999999999999 999999999999    55556667778999999999 99999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCCC---CHHHHHHHHHHHHhhHHHHhhhhCCCCchHHH
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCSF---TQEETEYLTNRIQNGGTEVVEAKAGAGSATLS  246 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~~---~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s  246 (258)
                      ++++|+++|+++++|+++|||+| |++++|+||++++    ..++   ++++++++.++++++|++|++.|   ||++||
T Consensus       156 ~~~la~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---gs~~~~  231 (313)
T 1hye_A          156 KVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK---GGSEFG  231 (313)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---------CC
T ss_pred             HHHHHHHhCcCHHHeEEEEeecc-CCcccceeeccccCCEEHHHHhcCCHHHHHHHHHHHHhccceeecCC---CCcHHH
Confidence            99999999999999999999999 7899999999874    2233   55668999999999999999954   689999


Q ss_pred             HHHHHHHhHhc
Q 025075          247 MRLNLRMHASV  257 (258)
Q Consensus       247 ~a~a~~~~~~~  257 (258)
                      +|.++++++++
T Consensus       232 ~a~a~~~~~~a  242 (313)
T 1hye_A          232 PAAAILNVVRC  242 (313)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999863

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=100.00  E-value=1.7e-45  Score=331.33  Aligned_cols=224  Identities=29%  Similarity=0.491  Sum_probs=196.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++||+|||| |.+|+++++.|+..++++ |+|+|++++  ++..+|+.+..    ....+.   .++|+ ++++|||+||
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~-v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~---~t~d~-~al~~aD~Vi   77 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGD-VVLFDIVKNMPHGKALDTSHTNVMAYSNCKVS---GSNTY-DDLAGADVVI   77 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCE-EEEECSSSSHHHHHHHHHHTHHHHHTCCCCEE---EECCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCe-EEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEE---ECCCH-HHhCCCCEEE
Confidence            569999998 999999999999999875 999999986  56677887752    122333   24577 8899999999


Q ss_pred             EcCCCCCCCCCc-----hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ee
Q 025075           94 IPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (258)
Q Consensus        94 i~ag~~~~~g~~-----r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~  167 (258)
                      +++|.|+++|++     |.|++.+|+++++++++.|++++|+++++++|||+|    ++++++++.++|||+||+|+ |.
T Consensus        78 ~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~----~~t~~~~~~~g~~~~rviG~gt~  153 (322)
T 1t2d_A           78 VTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGLGGV  153 (322)
T ss_dssp             ECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECCHH
T ss_pred             EeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChH----HHHHHHHHhcCCChHHEEeccCc
Confidence            999999999999     999999999999999999999999999999999999    45566667677999999999 69


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhh
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k  237 (258)
                      ||++|+++++|+++|+++++|+++|||+| |++++|+||++++.    .      .+++++++++.++++++|++|++.|
T Consensus       154 ld~~R~~~~la~~lgv~~~~v~~~v~G~H-G~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k  232 (322)
T 1t2d_A          154 LDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNLH  232 (322)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHhCCCHHHeEEEEEcCC-CCcEEeeHHHceECcEeHHHhccccCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999 68999999998742    1      1466678999999999999999975


Q ss_pred             CCCCchHHHHHHHHHHhHhc
Q 025075          238 AGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~~  257 (258)
                         |+++||+|.++++++++
T Consensus       233 ---gs~~~~~a~a~~~~~~a  249 (322)
T 1t2d_A          233 ---ASPYVAPAAAIIEMAES  249 (322)
T ss_dssp             ---SSCCHHHHHHHHHHHHH
T ss_pred             ---CchHHHHHHHHHHHHHH
Confidence               58999999999999863

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=100.00  E-value=1.1e-45  Score=333.27  Aligned_cols=226  Identities=35%  Similarity=0.550  Sum_probs=196.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC----CCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++||+|||| |.+|+++++.|+..|++ +|+|+|++++  ++.++|+.|...    ...+.   .++|+ ++++|||+||
T Consensus        14 ~~kI~ViGa-G~vG~~iA~~la~~g~~-~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~---~t~d~-~al~~aD~VI   87 (328)
T 2hjr_A           14 RKKISIIGA-GQIGSTIALLLGQKDLG-DVYMFDIIEGVPQGKALDLNHCMALIGSPAKIF---GENNY-EYLQNSDVVI   87 (328)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCC-EEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHHHHhHhhccCCCCEEE---ECCCH-HHHCCCCEEE
Confidence            369999998 99999999999999986 4999999986  455667776531    22343   24677 7999999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe-eccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t-~lds~R  172 (258)
                      +++|.|+++|++|.|++.+|+++++++++.+.+++|+++++++|||+|    ++++++++.+++||+||+|+| .|||+|
T Consensus        88 ~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~----~~t~~~~~~~~~~~~rviG~~t~Ld~~R  163 (328)
T 2hjr_A           88 ITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLD----AMVYYFKEKSGIPANKVCGMSGVLDSAR  163 (328)
T ss_dssp             ECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHH
T ss_pred             EcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchH----HHHHHHHHhcCCChhhEEEeCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999    456666777789999999995 999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC------CCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS------FTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      +++++|+++|+++++|+++|||+| |++++|+||++++.    .+      +++++++++.++++++|++|++.. |+||
T Consensus       164 ~~~~la~~lgv~~~~v~~~v~G~H-g~t~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~~-~~gs  241 (328)
T 2hjr_A          164 FRCNLSRALGVKPSDVSAIVVGGH-GDEMIPLTSSVTIGGILLSDFVEQGKITHSQINEIIKKTAFGGGEIVELL-KTGS  241 (328)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHHH-SSCC
T ss_pred             HHHHHHHHhCCCHHHeeEEEecCC-CCceeeeeeeceECCEEHHHHhhccCCCHHHHHHHHHHHHhhHHHHHhhh-CCCc
Confidence            999999999999999999999999 68999999998731    11      466778999999999999999964 5689


Q ss_pred             hHHHHHHHHHHhHhc
Q 025075          243 ATLSMRLNLRMHASV  257 (258)
Q Consensus       243 ~~~s~a~a~~~~~~~  257 (258)
                      ++||+|.++++++++
T Consensus       242 ~~~~~a~a~~~i~~a  256 (328)
T 2hjr_A          242 AFYAPAASAVAMAQA  256 (328)
T ss_dssp             CCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence            999999999999864

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=100.00  E-value=2e-45  Score=331.96  Aligned_cols=227  Identities=33%  Similarity=0.540  Sum_probs=196.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +|||+|||| |.+|++++..|+..+++ +|+|||++++  ++.++|+.|..    ....+.   .++|++++++|||+||
T Consensus         9 ~~kI~VIGa-G~vG~~lA~~la~~g~~-~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~---~t~d~~ea~~~aDiVi   83 (331)
T 1pzg_A            9 RKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVR---AEYSYEAALTGADCVI   83 (331)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEE---EECSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCC-eEEEEECChhHHHHHHHHHHhhhhccCCCCEEE---EeCCHHHHhCCCCEEE
Confidence            479999998 99999999999998876 4999999986  44457776642    122333   3468877999999999


Q ss_pred             EcCCCCCCCCC-----chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-ee
Q 025075           94 IPAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TM  167 (258)
Q Consensus        94 i~ag~~~~~g~-----~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~  167 (258)
                      +++|.|+++|+     +|.|++.+|+++++++++.|.+++|+++++++|||+|    ++++++++.+++||+||+|+ |.
T Consensus        84 ~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~----~~t~~~~~~~~~~~~rviG~gt~  159 (331)
T 1pzg_A           84 VTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD----CMVKVMCEASGVPTNMICGMACM  159 (331)
T ss_dssp             ECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH----HHHHHHHHHHCCCGGGEEECCHH
T ss_pred             EccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchH----HHHHHHHHhcCCChhcEEeccch
Confidence            99999999999     9999999999999999999999999999999999999    45666666777999999999 69


Q ss_pred             ccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC------CCHHHHHHHHHHHHhhHHHHhhhh
Q 025075          168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS------FTQEETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~------~~~~~~~~i~~~v~~~~~~i~~~k  237 (258)
                      ||++|+++++|+++|+++++|+++|||+| |++++|+||++++.    .+      +++++++++.++++++|++|++..
T Consensus       160 LD~~R~~~~la~~lgv~~~~v~~~v~G~H-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~eii~~~  238 (331)
T 1pzg_A          160 LDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVRFL  238 (331)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHceEEEecCC-CCCEeeeeecceECCEEHHHHhhcccCCHHHHHHHHHHHHhccHHHHHhh
Confidence            99999999999999999999999999999 68999999998731    11      466678899999999999999952


Q ss_pred             CCCCchHHHHHHHHHHhHhc
Q 025075          238 AGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~~  257 (258)
                       ++||++||+|.++++++++
T Consensus       239 -~kgst~~~~a~a~~~ii~a  257 (331)
T 1pzg_A          239 -GQGSAYYAPAASAVAMATS  257 (331)
T ss_dssp             -SSSCCCHHHHHHHHHHHHH
T ss_pred             -cCCCccchHHHHHHHHHHH
Confidence             3578999999999999864

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=100.00  E-value=1.1e-44  Score=326.87  Aligned_cols=230  Identities=23%  Similarity=0.331  Sum_probs=193.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCC----CC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVV----NT--PGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~-----~ei~L~D~~----~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      ++|||+||||+|+||+++++.|+.++++     .+|+|+|++    ++  .+.++||.|...+. ...+..++|++++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            4589999998899999999999988875     399999998    43  57789999964332 223334567889999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~  165 (258)
                      |||+||+++|.++++|++|.|++.+|+++++++++.+.++| |+++++++|||+|.    +++++++.+ +||++|++|+
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~~----~t~~~~~~~~~~p~~~v~g~  158 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPANT----NAYIAMKSAPSLPAKNFTAM  158 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH----HHHHHHHTCTTSCGGGEEEC
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchHH----HHHHHHHHcCCCCHHHEEEe
Confidence            99999999999999999999999999999999999999997 99999999999994    555566665 8999999999


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCCC-C----CCHHH--HHHHHHHHHhhHHHHhhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k  237 (258)
                      |.||+.|+++++|+++|+++++|++ +|||+| |++++|+||++++.. +    +++++  .+++.++++++|++|++.|
T Consensus       159 t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~H-g~s~~p~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~g~eii~~k  237 (329)
T 1b8p_A          159 LRLDHNRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR  237 (329)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH
T ss_pred             ecHHHHHHHHHHHHHhCcCHHHceEEEEEecc-CCcEeeehHHCeECCeeHHHHhccchhhHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999995 689999 689999999998531 1    22223  4789999999999999998


Q ss_pred             CCCCchHHHHHHHHHHhHh
Q 025075          238 AGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~  256 (258)
                       |. +++++.|.+++++++
T Consensus       238 -g~-~~~~~~a~a~~~~~~  254 (329)
T 1b8p_A          238 -GV-SSAASAANAAIDHIH  254 (329)
T ss_dssp             -SS-CCHHHHHHHHHHHHH
T ss_pred             -CC-ChHHHHHHHHHHHHH
Confidence             44 344556778888865

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=100.00  E-value=1.3e-44  Score=323.25  Aligned_cols=223  Identities=24%  Similarity=0.364  Sum_probs=172.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||| |.+|+++++.|+..|++++|+|+|++++  ++.++|+.|... ....+...  ++ .++++|||+||+++|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~--~~-~~a~~~aDvVIi~~~   76 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH--GG-HSELADAQVVILTAG   76 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE--EC-GGGGTTCSEEEECC-
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE--CC-HHHhCCCCEEEEcCC
Confidence            59999998 9999999999999998899999999875  567788887652 11222222  34 378999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~  176 (258)
                      .|++||++|.|++.+|+++++++++.+.+++|+++++++|||++    ++++++++.+  |++||+|+ |.||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~----~~~~~~~~~~--~~~rviG~gt~Ld~~r~~~~  150 (304)
T 2v6b_A           77 ANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD----LLTDLATQLA--PGQPVIGSGTVLDSARFRHL  150 (304)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHH----HHHHHHHHHS--CSSCEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchH----HHHHHHHHhC--ChhcEEeCCcCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999    4455556664  89999999 99999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----C--------CCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S--------FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----~--------~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      +|+++|+++++|+++|+|+| |++++|+||++++..    +        +++++++++.++++++|++|++.|   |+++
T Consensus       151 la~~l~v~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~eii~~k---g~t~  226 (304)
T 2v6b_A          151 MAQHAGVDGTHAHGYVLGEH-GDSEVLAWSSAMVAGMPVADFMQAQNLPWNEQVRAKIDEGTRNAAASIIEGK---RATY  226 (304)
T ss_dssp             HHHHHTSCGGGEECCEEESS-STTEEECGGGCEETTEEHHHHHHHHTCCCSHHHHHHHHHHHTC--------------CC
T ss_pred             HHHHhCcCHHHceEEEecCC-CCceeeehhHccCCCEEHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhcc---CCcH
Confidence            99999999999999999999 789999999997421    1        466678999999999999999954   6899


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      |++|.++++++++
T Consensus       227 ~~~a~a~~~~~~a  239 (304)
T 2v6b_A          227 YGIGAALARITEA  239 (304)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999763

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=100.00  E-value=1.4e-43  Score=317.16  Aligned_cols=226  Identities=31%  Similarity=0.515  Sum_probs=194.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      |||+|||+ |.+|++++..|+..++..+|+|+|++++  ++..+|+.|..    ....+.   .++|++ ++++||+||+
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~---~t~d~~-~l~~aDvVii   75 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT---GSNDYA-DTANSDIVII   75 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE---EESCGG-GGTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEE---ECCCHH-HHCCCCEEEE
Confidence            69999998 9999999999998765569999999986  45555777652    122333   235664 5999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~  173 (258)
                      +++.|+++|++|.|++.+|+++++++++.+.+++|+++++++|||+|.    +++++++.+++|++|++|+ |.||++|+
T Consensus        76 av~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~~~----~~~~~~~~~~~~~~rviG~gt~ld~~r~  151 (310)
T 1guz_A           76 TAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDI----MTHVAWVRSGLPKERVIGMAGVLDAARF  151 (310)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHH----HHHHHHHHHCSCGGGEEEECHHHHHHHH
T ss_pred             eCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchHH----HHHHHHHhcCCChHHEEECCCchHHHHH
Confidence            999999999999999999999999999999999999999999999994    4556666677999999999 99999999


Q ss_pred             HHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHHHHH
Q 025075          174 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR  248 (258)
Q Consensus       174 ~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~s~a  248 (258)
                      ++++|+++|+++++|+++|||+| |++++|+||++++.    .+ +++++++++.++++++|++|++. .++||++||+|
T Consensus       152 ~~~la~~l~v~~~~v~~~v~G~H-g~~~~p~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~-~~kgs~~~~~a  229 (310)
T 1guz_A          152 RSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEH-LKQGSAFYAPA  229 (310)
T ss_dssp             HHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHH-HSSSCCCHHHH
T ss_pred             HHHHHHHhCCCHHHeEEEEEccc-CCcEeeeeecccCCCEEHHHHCCHHHHHHHHHHHHHhHHHHHhh-cCCCCcHHHHH
Confidence            99999999999999999999999 68999999998742    12 46778999999999999999995 24578999999


Q ss_pred             HHHHHhHhc
Q 025075          249 LNLRMHASV  257 (258)
Q Consensus       249 ~a~~~~~~~  257 (258)
                      .++++++++
T Consensus       230 ~a~~~~~~a  238 (310)
T 1guz_A          230 SSVVEMVES  238 (310)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999763

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=2.4e-41  Score=303.84  Aligned_cols=225  Identities=28%  Similarity=0.476  Sum_probs=190.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||+ |.+|++++..|+..|+.++|+|+|++++  ++...|+.+... ....+... + | .+++++||+||++++
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~-d-~~~~~~aDvViiav~   76 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA-G-D-YADLKGSDVVIVAAG   76 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE-C-C-GGGGTTCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe-C-C-HHHhCCCCEEEEccC
Confidence            59999998 9999999999998888889999999864  344455554321 01122222 3 5 368999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHHHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF  176 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R~~~~  176 (258)
                      .++++|++|.|++.+|+++++++++.|.+++|+++++++|||++.    +++++++.+++|++||+|+ |.||++|++++
T Consensus        77 ~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~----~~~~~~~~~~~~~~rviG~~t~ld~~r~~~~  152 (319)
T 1a5z_A           77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDV----LTYFFLKESGMDPRKVFGSGTVLDTARLRTL  152 (319)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHH----HHHHHHHHHTCCTTTEEECTTHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHH----HHHHHHHHhCCChhhEEeeCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999999994    4556666667999999999 79999999999


Q ss_pred             HHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------C-CCHHHHHHHHHHHHhhHHHHhhhhCCCCchHH
Q 025075          177 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------S-FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (258)
Q Consensus       177 la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~-~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~  245 (258)
                      +|+++|+++++|+++|+|+| |++++|+||++++.    .      . ++++.++++.++++++|++|++.|   |+++|
T Consensus       153 la~~lgv~~~~v~~~v~G~h-g~~~~p~~s~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~eii~~k---g~~~~  228 (319)
T 1a5z_A          153 IAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEIIERK---GATHY  228 (319)
T ss_dssp             HHHHHTCCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHH---SCCCH
T ss_pred             HHHHhCcCHHHceEEEEeCC-CCCcccchhhceECCEEHHHHhhcccccCHHHHHHHHHHHHHhhhhhhccC---CchHH
Confidence            99999999999999999999 78999999998731    1      1 466678999999999999999976   57889


Q ss_pred             HHHHHHHHhHhc
Q 025075          246 SMRLNLRMHASV  257 (258)
Q Consensus       246 s~a~a~~~~~~~  257 (258)
                      ++|.++++++++
T Consensus       229 ~~a~a~~~~~~a  240 (319)
T 1a5z_A          229 AIALAVADIVES  240 (319)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999864

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=100.00  E-value=1.1e-40  Score=298.15  Aligned_cols=226  Identities=21%  Similarity=0.296  Sum_probs=187.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ||||+|||+ |.+|++++..|+..|+..+|+|+|++++  ++...|+.|...  ...++..  ++|+ +++++||+||++
T Consensus         1 m~kI~VIGa-G~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            1 ARKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVIST   76 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEE--eCCH-HHhCCCCEEEEe
Confidence            479999997 9999999999988886569999999875  344556654421  1123322  2466 789999999999


Q ss_pred             CCCCCC----CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccH
Q 025075           96 AGVPRK----PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV  170 (258)
Q Consensus        96 ag~~~~----~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds  170 (258)
                      ++.+++    ||++|.|++.+|+++++++++.+.+++|+++++++|||+|    ++++++++.+++|++|++|+ |.||+
T Consensus        77 v~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~----~~~~~~~~~~~~~~~rvig~gt~ld~  152 (309)
T 1hyh_A           77 LGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGTGTLLDT  152 (309)
T ss_dssp             CSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEECTTHHHH
T ss_pred             cCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH----HHHHHHHHhcCCCHHHEeecCccchH
Confidence            999988    9999999999999999999999999999999999999999    56667777777999999999 99999


Q ss_pred             HHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC---CCHHHHHHHHHHHHhhHHHHhhhhCCCCch
Q 025075          171 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS---FTQEETEYLTNRIQNGGTEVVEAKAGAGSA  243 (258)
Q Consensus       171 ~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~---~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~  243 (258)
                      +|+++.+++.+++++++++++++|+| |++++|+||++.+    +.+   +++++++++.++++++|++|++.|   |++
T Consensus       153 ~r~~~~~a~~l~~~~~~v~~~v~G~h-g~~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~k---g~~  228 (309)
T 1hyh_A          153 ARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK---GYT  228 (309)
T ss_dssp             HHHHHHHHHHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH---SSC
T ss_pred             HHHHHHHHHHhCCChhheEEEEEeCC-CCcEeeccccceECCEEHHHhccCCHHHHHHHHHHHHHhHHHHHhcc---CCc
Confidence            99999999999999999999999999 7899999999873    222   456678999999999999999976   578


Q ss_pred             HHHHHHHHHHhHhc
Q 025075          244 TLSMRLNLRMHASV  257 (258)
Q Consensus       244 ~~s~a~a~~~~~~~  257 (258)
                      +|++|.++++++++
T Consensus       229 ~~~~a~a~~~~~~a  242 (309)
T 1hyh_A          229 SYGVATSAIRIAKA  242 (309)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999999999763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=100.00  E-value=7.8e-39  Score=287.14  Aligned_cols=225  Identities=31%  Similarity=0.490  Sum_probs=192.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++||+|||| |.+|++++..|+..|+. +|+|+|++++  ++..+|+.+..    ....+.   .++|+ +++++||+||
T Consensus         4 ~~kI~VIGa-G~~G~~ia~~la~~g~~-~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~---~t~d~-~a~~~aDiVi   77 (317)
T 2ewd_A            4 RRKIAVIGS-GQIGGNIAYIVGKDNLA-DVVLFDIAEGIPQGKALDITHSMVMFGSTSKVI---GTDDY-ADISGSDVVI   77 (317)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTCSEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCc-eEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEE---ECCCH-HHhCCCCEEE
Confidence            479999998 99999999999988875 6999999886  34455665542    122333   23566 7899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R  172 (258)
                      +++|.|+++|++|.|++.+|.++++++++.+.+++|+++++++|||++    ++++.+++.+++||+|++|+ |.+|+.|
T Consensus        78 ~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~----~~~~~~~~~~~~~~~rviG~~t~ld~~r  153 (317)
T 2ewd_A           78 ITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD----VMVSHFQKVSGLPHNKVCGMAGVLDSSR  153 (317)
T ss_dssp             ECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHCCCGGGEEESCHHHHHHH
T ss_pred             EeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH----HHHHHHHHhhCCCHHHEEeccCcHHHHH
Confidence            999999999999999999999999999999999999999999999999    44555556667999999999 6999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C------CCCHHHHHHHHHHHHhhHHHHhhhhCCCCc
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C------SFTQEETEYLTNRIQNGGTEVVEAKAGAGS  242 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~------~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~  242 (258)
                      +++.+|+++|++++++.++|+|+| |++++|+||++++.    .      .++.++++++.++++.+++++++.. |+|+
T Consensus       154 ~~~~la~~lg~~~~~v~~~v~g~H-g~~~~~~~~~a~v~g~~~~~~~~~g~~~~~~id~~~~~~~~~~~ei~~~~-g~g~  231 (317)
T 2ewd_A          154 FRTFIAQHFGVNASDVSANVIGGH-GDGMVPATSSVSVGGVPLSSFIKQGLITQEQIDEIVCHTRIAWKEVADNL-KTGT  231 (317)
T ss_dssp             HHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHH-SSSC
T ss_pred             HHHHHHHHhCcChhhceEEEEecC-CCceeEEeeccccCCEEHHHHHhccCCCHHHHHHHHHHHHhhHHHHHHhh-cCCc
Confidence            999999999999999999999999 68999999998521    1      1467788999999999999999975 6789


Q ss_pred             hHHHHHHHHHHhHh
Q 025075          243 ATLSMRLNLRMHAS  256 (258)
Q Consensus       243 ~~~s~a~a~~~~~~  256 (258)
                      ++|++|.+++++++
T Consensus       232 ~~~~~a~a~~~~~~  245 (317)
T 2ewd_A          232 AYFAPAAAAVKMAE  245 (317)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH
Confidence            99999999999975

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=100.00  E-value=4.3e-36  Score=270.22  Aligned_cols=231  Identities=24%  Similarity=0.377  Sum_probs=190.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~-----~ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++|||+|+||+|++|++++..|..+|+.     .+|+++|+++.    .+..+|+.|...... ..+..+.+++++++|+
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCC
Confidence            3479999998899999999999988865     39999999752    456778887643222 2233345678899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEEee
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGVTM  167 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~t~  167 (258)
                      |+||++||.+++++++|.+++..|+.+++++++.+++++ |+++++++|||+|.+++    +.++.+ ++||++++|.|.
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~----~~~~~~~~~~p~~~yg~tk  157 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNAL----IAYKNAPGLNPRNFTAMTR  157 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHH----HHHHTCTTSCGGGEEECCH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHH----HHHHHcCCCChhheeccch
Confidence            999999999999999999999999999999999999997 99999999999985544    344444 689999999999


Q ss_pred             ccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeeccCCCCC----CCCC-CHHH-HHHHHHHHHhhHHHHhhhhCCC
Q 025075          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKP----PCSF-TQEE-TEYLTNRIQNGGTEVVEAKAGA  240 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~S~~~~----~~~~-~~~~-~~~i~~~v~~~~~~i~~~k~g~  240 (258)
                      +|+.|+++.+++++|+++..++ .+|+|+| +++++|+|+++..    +..+ +.+. ++++.++++++|++|++.| |.
T Consensus       158 l~~er~~~~~a~~~g~~~~~vr~~~V~G~h-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~v~~~g~~ii~~k-g~  235 (327)
T 1y7t_A          158 LDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR-GA  235 (327)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH-SS
T ss_pred             HHHHHHHHHHHHHhCcChhheeeeEEEcCC-CCeEEEEeeeeeeCCeeHHHhccchhHHHHHHHHHHHHHHHHHHcc-CC
Confidence            9999999999999999999999 5799999 6899999998863    2223 3332 5899999999999999998 43


Q ss_pred             CchHHHHHHHHHHhHhc
Q 025075          241 GSATLSMRLNLRMHASV  257 (258)
Q Consensus       241 ~~~~~s~a~a~~~~~~~  257 (258)
                       ++++++|.++++++++
T Consensus       236 -~~~~~~a~a~~~~~~~  251 (327)
T 1y7t_A          236 -SSAASAANAAIEHIRD  251 (327)
T ss_dssp             -CCHHHHHHHHHHHHHH
T ss_pred             -CchHHHHHHHHHHHHH
Confidence             4456788899998763

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=100.00  E-value=2.2e-34  Score=266.64  Aligned_cols=223  Identities=16%  Similarity=0.154  Sum_probs=168.3

Q ss_pred             CCeEEEEcCCCchHHHH--HHHHHh--CCC-CcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPL--AMLMKI--NPL-VSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~--a~~L~~--~~~-~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++||+|||| |++ .+.  +..|+.  .++ .+||+|+|+++++. .+.|+.+.......+. ..++|++++++|||+||
T Consensus         2 ~~KI~IIGa-G~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v-~~t~d~~~al~~AD~Vi   78 (417)
T 1up7_A            2 HMRIAVIGG-GSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKV-LISDTFEGAVVDAKYVI   78 (417)
T ss_dssp             CCEEEEETT-TCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEE-EECSSHHHHHTTCSEEE
T ss_pred             CCEEEEECC-CHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEE-EEeCCHHHHhCCCCEEE
Confidence            579999998 886 333  234454  676 78999999988521 2445544321111232 23578889999999999


Q ss_pred             EcCCCCCCCCCchhh--------------------HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 025075           94 IPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        94 i~ag~~~~~g~~r~d--------------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~  153 (258)
                      +++|++++++++|++                    ++.+|+++++++++.|+++| +||+|++|||+|    ++|+++++
T Consensus        79 itagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPvd----i~t~a~~k  153 (417)
T 1up7_A           79 FQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPSG----HITEFVRN  153 (417)
T ss_dssp             ECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSHH----HHHHHHHH
T ss_pred             EcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChHH----HHHHHHHH
Confidence            999999998888842                    35899999999999999999 999999999999    78888888


Q ss_pred             hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-----------cCCCCceeeccCCC---CCC----CCC-
Q 025075          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQV---KPP----CSF-  214 (258)
Q Consensus       154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~h~g~~~vp~~S~~---~~~----~~~-  214 (258)
                      .+  |++||||+|... .|+++.+|+.+|+++++|+++|+|           +| |++++|.||..   ++.    .++ 
T Consensus       154 ~~--p~~rviG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~~~~h-G~d~~p~~~~~~~~~~~~~~~~~~~  229 (417)
T 1up7_A          154 YL--EYEKFIGLCNVP-INFIREIAEMFSARLEDVFLKYYGLNHLSFIEKVFVK-GEDVTEKVFENLKLKLSNIPDEDFP  229 (417)
T ss_dssp             TT--CCSSEEECCSHH-HHHHHHHHHHTTCCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHHHHTTC---CCTTSCC
T ss_pred             hC--CCCCEEEeCCCH-HHHHHHHHHHhCCCHHHCeEEEEeecceeeEEEeecC-CcEehhhHHHHHHHhhCCCcCCchH
Confidence            75  778999998543 499999999999999999999999           98 78999999975   210    122 


Q ss_pred             --------------------CHHHHHHH---------HHHHHhhHHHHh--------hhhCCCCchHHHHHHHHHHhHhc
Q 025075          215 --------------------TQEETEYL---------TNRIQNGGTEVV--------EAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       215 --------------------~~~~~~~i---------~~~v~~~~~~i~--------~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                                          +++.++++         .+++++.+++++        +.. ++|+++|  +.++++++++
T Consensus       230 ~~~~~~~g~~p~~y~~~y~~~~~~~~~~~~~~~r~~~~~~~~~~~~~i~~~~~~~~~~l~-~kg~t~~--~~~a~~ii~A  306 (417)
T 1up7_A          230 TWFYDSVRLIVNPYLRYYLMEKKMFKKISTHELRAREVMKIEKELFEKYRTAVEIPEELT-KRGGSMY--STAAAHLIRD  306 (417)
T ss_dssp             HHHHHHHCSEECGGGHHHHTHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTCSSCCGGGG-GSTTTTH--HHHHHHHHHH
T ss_pred             HHHHHhcCCCccchhhhccCCHHHHHhccccchHHHHHHHHHHHHHHHHHhhcccchhhh-hcCCcHH--HHHHHHHHHH
Confidence                                12334454         578888899999        332 3456655  7777777653

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=100.00  E-value=2.1e-33  Score=251.12  Aligned_cols=225  Identities=24%  Similarity=0.404  Sum_probs=187.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC---CCeEEEEeCCCchHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      ++|||+|||| |.+|++++..|+..|+.++|+|+|++++  .+.++|+.+...   ...+.   .+++. +++++||+||
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~---~~~~~-~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSID---GSDDP-EICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEE---EESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEE---eCCCH-HHhCCCCEEE
Confidence            4579999998 9999999999999988889999999864  334666665431   22232   12344 6899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eeccHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVR  172 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~lds~R  172 (258)
                      ++++.++++|++|.|++.+|+++++++++.+.+++|++++++++||++.    .+++.++.+++|++||+|. |.+|+.|
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~~----~~~~~~~~~~~~~~~vig~~~~l~~~r  156 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVDI----ATHVAQKLTGLPENQIFGSGTNLDSAR  156 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHH----HHHHHHHHHTCCTTSEEECTTHHHHHH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchHH----HHHHHHHhcCCCHHHEeeccccHhHHH
Confidence            9999999999999999999999999999999999999999999999994    4455555556999999999 8999999


Q ss_pred             HHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC---------CCHHHHHHHHHHHHhhHHHHhhhhCC
Q 025075          173 ANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS---------FTQEETEYLTNRIQNGGTEVVEAKAG  239 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~---------~~~~~~~~i~~~v~~~~~~i~~~k~g  239 (258)
                      ++..+++++++++.+++.+++|+| |++++|+||++..    +..         .+++.++++.+++++.+++|++.|  
T Consensus       157 ~~~~~a~~~~v~~~~v~~~~~G~~-g~~~~~~w~k~~in~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~v~~~~--  233 (319)
T 1lld_A          157 LRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYKIINGK--  233 (319)
T ss_dssp             HHHHHHHHHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHTSC--
T ss_pred             HHHHHHHHhCCCHHHeEEEEEeCC-CCceeeeeecceECCccHHHHHhccccccCCHHHHHHHHHHHHHhhHhhhhCC--
Confidence            999999999999999999999999 7899999998752    111         233447899999999999999965  


Q ss_pred             CCchHHHHHHHHHHhHh
Q 025075          240 AGSATLSMRLNLRMHAS  256 (258)
Q Consensus       240 ~~~~~~s~a~a~~~~~~  256 (258)
                       |++.++++.+.++|.+
T Consensus       234 -G~~~~~~a~~~~sm~~  249 (319)
T 1lld_A          234 -GATNYAIGMSGVDIIE  249 (319)
T ss_dssp             -CSCCHHHHHHHHHHHH
T ss_pred             -CCchHHHHHHHHHHHH
Confidence             5677888888888865

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=100.00  E-value=3.6e-34  Score=267.60  Aligned_cols=176  Identities=19%  Similarity=0.261  Sum_probs=146.2

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHh--CCC-CcEEEEEeCCC--ChhH-HHHHhc-----CCCCCeEEEEeCCCchHhhhC
Q 025075           20 GFKVAILGAAGGI-GQPLAMLMKI--NPL-VSVLHLYDVVN--TPGV-TADISH-----MDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus        20 ~~KI~IIGa~G~V-G~~~a~~L~~--~~~-~~ei~L~D~~~--~~g~-~~dl~~-----~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      ++||+|||| |++ |..++..|+.  .++ .+||+|||+++  ++.. ..|+.+     ...+..+.   .++|++++++
T Consensus         7 ~~KIaVIGa-Gsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~---~t~D~~eal~   82 (450)
T 1s6y_A            7 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH---LTLDRRRALD   82 (450)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE---EESCHHHHHT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEE---EeCCHHHHhC
Confidence            479999998 998 7777766765  666 78999999988  6321 123322     22233443   3568888999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhH--------------------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHH
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA  147 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~--------------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~  147 (258)
                      |||+||+++|+++++|++|+++                    +.+|+++++++++.|+++||+||+|++|||+|    ++
T Consensus        83 gAD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd----iv  158 (450)
T 1s6y_A           83 GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MV  158 (450)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HH
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HH
Confidence            9999999999999988888744                    79999999999999999999999999999999    78


Q ss_pred             HHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-----------cCCCCceeeccCC
Q 025075          148 AEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-----------GHAGVTILPLLSQ  207 (258)
Q Consensus       148 t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-----------~h~g~~~vp~~S~  207 (258)
                      |+++++.+  |++||||+|... .|+++.+|+.+|+++++|+++|+|           +| |++++|.||.
T Consensus       159 T~a~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~v~~~v~GlNH~~w~~~v~~~-G~d~~p~~~~  225 (450)
T 1s6y_A          159 TEAVLRYT--KQEKVVGLCNVP-IGMRMGVAKLLGVDADRVHIDFAGLNHMVFGLHVYLD-GVEVTEKVID  225 (450)
T ss_dssp             HHHHHHHC--CCCCEEECCSHH-HHHHHHHHHHHTSCGGGEEEEEEEETTEEEEEEEEET-TEECHHHHHH
T ss_pred             HHHHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCCCHHHcEEEEEeeecceeEEEeeeC-CcCchHhHHH
Confidence            88888875  778999998655 499999999999999999999999           88 7899999986

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=99.98  E-value=1.6e-32  Score=257.63  Aligned_cols=176  Identities=22%  Similarity=0.315  Sum_probs=145.6

Q ss_pred             CCeEEEEcCCCch-HHHHHHHHHhC--CC-CcEEEEEeCCCChhH-HHHHhcC-----CCCCeEEEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGI-GQPLAMLMKIN--PL-VSVLHLYDVVNTPGV-TADISHM-----DTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~V-G~~~a~~L~~~--~~-~~ei~L~D~~~~~g~-~~dl~~~-----~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++||+|||| |++ +.+++..|+.+  ++ .+||+|||+++++.. ..|+.+.     ..+..+.   .++|++++++||
T Consensus        28 ~~KIaVIGa-Gsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~---~t~D~~eal~~A  103 (472)
T 1u8x_X           28 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFA---ATTDPEEAFTDV  103 (472)
T ss_dssp             CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEE---EESCHHHHHSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEE---EECCHHHHHcCC
Confidence            359999998 998 55577777776  77 789999999875211 2344332     1233444   246888899999


Q ss_pred             CEEEEcCCCCCCCCCchhhH--------------------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHH
Q 025075           90 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~--------------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~  149 (258)
                      |+||+++|.+++++++|+++                    +.+|+++++++++.|+++||+||+|++|||+|    ++|+
T Consensus       104 D~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd----i~T~  179 (472)
T 1u8x_X          104 DFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAE  179 (472)
T ss_dssp             SEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHH
T ss_pred             CEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH----HHHH
Confidence            99999999988888887444                    89999999999999999999999999999999    7788


Q ss_pred             HHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCC-CceeEEEEe-----------c-CCCCceeeccCC
Q 025075          150 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVG-----------G-HAGVTILPLLSQ  207 (258)
Q Consensus       150 ~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~-~~v~~~v~G-----------~-h~g~~~vp~~S~  207 (258)
                      ++++.+  |++||||+|... .|+++.+|+.+|+++ ++|+++|+|           + | |++++|.||.
T Consensus       180 ~~~k~~--p~~rViG~c~~~-~r~~~~la~~lgv~~~~~v~~~v~GlNH~~W~~~~~~~h-G~d~~p~~~~  246 (472)
T 1u8x_X          180 ATRRLR--PNSKILNICDMP-VGIEDRMAQILGLSSRKEMKVRYYGLNHFGWWTSIQDQE-GNDLMPKLKE  246 (472)
T ss_dssp             HHHHHS--TTCCEEECCSHH-HHHHHHHHHHHTCSCGGGEEEEEEEETTEEEEEEEEETT-CCBCHHHHHH
T ss_pred             HHHHhC--CCCCEEEeCCcH-HHHHHHHHHHhCcCchhceeEEEeccchhhheeeeEeCC-CCEehHhHHH
Confidence            888875  888999998654 499999999999998 999999999           8 8 8999999987

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=99.95  E-value=1.3e-27  Score=224.37  Aligned_cols=165  Identities=24%  Similarity=0.244  Sum_probs=127.4

Q ss_pred             CCCeEEEEcCCCchHHHH--HHHHHh-CCC-CcEEEEEeCCCChhH-HHHHhc-----CCCCCeEEEEeCCCchHhhhCC
Q 025075           19 AGFKVAILGAAGGIGQPL--AMLMKI-NPL-VSVLHLYDVVNTPGV-TADISH-----MDTGAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~--a~~L~~-~~~-~~ei~L~D~~~~~g~-~~dl~~-----~~~~~~v~~~~~~~d~~~a~~~   88 (258)
                      +++||+|||| |+||++.  +..|+. .++ ..+|+|||+++++.. ..++.+     ...+..+.   .++|++++++|
T Consensus         2 ~~~KIaVIGA-GsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~---~ttD~~eal~d   77 (480)
T 1obb_A            2 PSVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFE---KTMNLDDVIID   77 (480)
T ss_dssp             CCCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEE---EESCHHHHHTT
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEE---EECCHHHHhCC
Confidence            4579999998 9986554  556664 334 469999999875211 222221     11233443   35688889999


Q ss_pred             CCEEEEcCCC------------CCCCCCch--hh------------HHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075           89 MDLVIIPAGV------------PRKPGMTR--DD------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (258)
Q Consensus        89 aDiVIi~ag~------------~~~~g~~r--~d------------~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~  142 (258)
                      ||+||+++|+            |.|+|..|  .|            ++.+|+++++++++.|+++||+||+|++|||+| 
T Consensus        78 AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvd-  156 (480)
T 1obb_A           78 ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF-  156 (480)
T ss_dssp             CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH-
T ss_pred             CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH-
Confidence            9999999986            45666655  44            478999999999999999999999999999999 


Q ss_pred             cHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe-cC
Q 025075          143 TVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GH  196 (258)
Q Consensus       143 ~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G-~h  196 (258)
                         ++|+++++   +|++||||+|.++. ++++++ +.+|+++++|+++|+| +|
T Consensus       157 ---i~t~~~~k---~p~~rviG~c~~~~-~~~~~l-~~lgv~~~~v~~~v~GlNH  203 (480)
T 1obb_A          157 ---EGTTLVTR---TVPIKAVGFCHGHY-GVMEIV-EKLGLEEEKVDWQVAGVNH  203 (480)
T ss_dssp             ---HHHHHHHH---HSCSEEEEECSGGG-HHHHHH-HHTTCCGGGEEEEEEEETT
T ss_pred             ---HHHHHHHH---CCCCcEEecCCCHH-HHHHHH-HHhCCCHHHceEEEEeecc
Confidence               77777877   78999999985443 478999 9999999999999999 44

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=99.94  E-value=1.3e-26  Score=215.82  Aligned_cols=175  Identities=23%  Similarity=0.378  Sum_probs=137.7

Q ss_pred             CCCCeEEEEcCCCchH--HHHHHHHHhC-CCCcEEEEEeCCCChh----HHHHHhcCCCCCeEEEEeCCCchHhhhCCCC
Q 025075           18 AAGFKVAILGAAGGIG--QPLAMLMKIN-PLVSVLHLYDVVNTPG----VTADISHMDTGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG--~~~a~~L~~~-~~~~ei~L~D~~~~~g----~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      ++++||+|||| |++|  ..++..|+.. .+.++|+|||+++++.    ...+....   ...+ +..|+|+++|++|||
T Consensus         3 m~~~KIaVIGa-Gs~g~g~~la~~l~~~~~~~geV~L~Di~~e~le~~~~~~~~l~~---~~~~-I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            3 LDQIKIAYIGG-GSQGWARSLMSDLSIDERMSGTVALYDLDFEAAQKNEVIGNHSGN---GRWR-YEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCCEEEEEETT-TCSSHHHHHHHHHHHCSSCCEEEEEECSSHHHHHHHHHHHTTSTT---SCEE-EEEESSHHHHHTTCS
T ss_pred             CCCCEEEEECC-ChhHhHHHHHHHHHhccccCCeEEEEeCCHHHHHHHHHHHHHHhc---cCCe-EEEECCHHHHhcCCC
Confidence            45579999998 9975  5677666653 3346999999987421    12221111   2233 234689999999999


Q ss_pred             EEEEcCC------------CCCCCCCchh--hHH--------HHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH
Q 025075           91 LVIIPAG------------VPRKPGMTRD--DLF--------NINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA  148 (258)
Q Consensus        91 iVIi~ag------------~~~~~g~~r~--d~~--------~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t  148 (258)
                      +||+++.            .|+|+|..|.  |..        .+|+++++++++.|+++||+||+|++|||+|    ++|
T Consensus        78 fVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvd----i~t  153 (450)
T 3fef_A           78 IVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMS----VCT  153 (450)
T ss_dssp             EEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHH
T ss_pred             EEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchH----HHH
Confidence            9999985            5889998776  554        4999999999999999999999999999999    777


Q ss_pred             HHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHh----C---CCCCceeEEEEe-cCCCCceeeccCCCC
Q 025075          149 EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL----G---LDPRDVDVPVVG-GHAGVTILPLLSQVK  209 (258)
Q Consensus       149 ~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l----~---v~~~~v~~~v~G-~h~g~~~vp~~S~~~  209 (258)
                      +++++.  +|+.||||+|... .++++.+|+.|    |   +++++|+..++| +|     +.+|++++
T Consensus       154 ~~~~k~--~p~~rviG~C~~~-~~~~~~~a~~l~~~lg~~~~~~~~v~~~~~GlNH-----~~w~~~~~  214 (450)
T 3fef_A          154 RVLYKV--FPGIKAIGCCHEV-FGTQKLLAEMVTERLGIEVPRREDIRVNVLGINH-----FTWITKAS  214 (450)
T ss_dssp             HHHHHH--CTTCEEEECCSHH-HHHHHHHHHHHHHHHCCCCSCGGGEEEEEEEETT-----EEEEEEEE
T ss_pred             HHHHHH--CCCCCEEEeCCcH-HHHHHHHHHHHHhhcCCCCCChhHeEEEEeeecC-----eEeEEEEE
Confidence            778776  7899999999776 68999999999    5   779999999999 77     66677654

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=99.92  E-value=9.2e-26  Score=212.23  Aligned_cols=173  Identities=23%  Similarity=0.220  Sum_probs=127.8

Q ss_pred             CeEEEEcCCCchHHHHH--HHHHhC----CCCcEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQPLA--MLMKIN----PLVSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a--~~L~~~----~~~~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |||+|||| |++|++..  ..++..    +...+|+|+|++++  ++...++.+..  .....+. ..++|+++|++|||
T Consensus         1 mKI~iIGa-Gs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i-~~t~d~~eAl~gAD   78 (477)
T 3u95_A            1 MKISIVGA-GSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKV-VKTESLDEAIEGAD   78 (477)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEE-EEESCHHHHHTTCS
T ss_pred             CEEEEECC-CchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEE-EEeCCHHHHhCCCC
Confidence            69999998 99997743  234332    23469999999985  34444444432  1122332 24679999999999


Q ss_pred             EEEEcCCC-------------------CCCCCCchhhHH---------------HHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           91 LVIIPAGV-------------------PRKPGMTRDDLF---------------NINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        91 iVIi~ag~-------------------~~~~g~~r~d~~---------------~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      +||+++|.                   |+|+|++|.++.               .+|++++.++++.|+++|||||+|++
T Consensus        79 ~Vi~~~g~~~~Rvg~~~~r~~de~~~ip~k~G~~~~~l~qet~g~gG~~~~lR~~~~i~v~~~i~~~i~~~~P~A~~in~  158 (477)
T 3u95_A           79 FIINTAYPYDPRYHDSGSQRWDEVTKVGEKHGYYRGIDSQELNMVSTYTYVLSSYPDVKLALEIAEKMKKMAPKAYLMQT  158 (477)
T ss_dssp             EEEECCCCCCTTTCSSHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTSCSTTTTHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             EEEECcccccccccccccccceeeeccCcccceeecccccccCCccchhHHHhhhhhHHHHHHHHHHHHhhCCCeEEEEe
Confidence            99999975                   347777766543               35899999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeecc
Q 025075          137 SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLL  205 (258)
Q Consensus       137 tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~  205 (258)
                      |||++    ++|+++++.+   ..|++|+|+-..  ....+++.||+++++|+..+.|-|| -+-+..|
T Consensus       159 tNP~~----i~t~a~~~~~---~~k~vGlC~~~~--~~~~~~~~Lg~~~~~v~~~~~GlNH-~~w~~~~  217 (477)
T 3u95_A          159 ANPVF----EITQAVRRWT---GANIIGFCHGVA--GVYEVFERLGLDPEEVDWQVAGVNH-GIWLNRF  217 (477)
T ss_dssp             SSCHH----HHHHHHHHHH---CCCEEEECCGGG--HHHHHHHHTTCCGGGEEEEEEEETT-EEEEEEE
T ss_pred             cChHH----HHHHHHHHhC---CCCeEEECCCHH--HHHHHHHHhCCCHHHcEEEEeecCC-Ceeeeee
Confidence            99999    7777777754   469999996433  3456778899999999999999774 2444444

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.04  E-value=2e-10  Score=102.49  Aligned_cols=121  Identities=16%  Similarity=0.202  Sum_probs=85.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH-----HH-HHhcCC-C----C--CeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----TA-DISHMD-T----G--AVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~-----~~-dl~~~~-~----~--~~v~~~~~~~d~~~   84 (258)
                      .||+|||| |.+|+.+|..++..|+  +|+|+|++++   ++.     .+ .+.... .    .  ..+..+..++|+++
T Consensus         7 ~~VaViGa-G~MG~giA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~   83 (319)
T 3ado_A            7 GDVLIVGS-GLVGRSWAMLFASGGF--RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAE   83 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHH
T ss_pred             CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHh
Confidence            58999998 9999999999999998  9999999874   111     11 111110 0    0  01111223568888


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ++++||+||-++              .+|+++.+++.++|++++| ++++  .||.+..   .++++....  -.|+|++
T Consensus        84 a~~~ad~ViEav--------------~E~l~iK~~lf~~l~~~~~~~aIl--aSNTSsl---~is~ia~~~--~~p~r~i  142 (319)
T 3ado_A           84 AVEGVVHIQECV--------------PENLDLKRKIFAQLDSIVDDRVVL--SSSSSCL---LPSKLFTGL--AHVKQCI  142 (319)
T ss_dssp             HTTTEEEEEECC--------------CSCHHHHHHHHHHHHTTCCSSSEE--EECCSSC---CHHHHHTTC--TTGGGEE
T ss_pred             HhccCcEEeecc--------------ccHHHHHHHHHHHHHHHhhhccee--ehhhhhc---cchhhhhhc--cCCCcEE
Confidence            999999999986              3468889999999999985 5655  8999886   345555433  3478999


Q ss_pred             EE
Q 025075          164 GV  165 (258)
Q Consensus       164 G~  165 (258)
                      |+
T Consensus       143 g~  144 (319)
T 3ado_A          143 VA  144 (319)
T ss_dssp             EE
T ss_pred             Ee
Confidence            96

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=98.91  E-value=7.4e-09  Score=101.86  Aligned_cols=120  Identities=14%  Similarity=0.207  Sum_probs=84.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH-----HHH-------HhcCC-CCCeEEEEeCCCc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----TAD-------ISHMD-TGAVVRGFLGQPQ   81 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~-----~~d-------l~~~~-~~~~v~~~~~~~d   81 (258)
                      ++..||+|||| |.+|+.+|..++..|+  +|+|+|++++   ++.     .++       +.... ....+.   .+++
T Consensus       314 ~~i~~v~ViGa-G~MG~gIA~~~a~aG~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~---~~~~  387 (742)
T 3zwc_A          314 QPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR---FSSS  387 (742)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEE---EESC
T ss_pred             ccccEEEEEcc-cHHHHHHHHHHHhCCC--chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhc---ccCc
Confidence            33469999998 9999999999999998  9999999874   111     010       00011 111232   2345


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||.++              .+|+++.+++.+++++++| ++++  .||.+..   -++++....  -.|+
T Consensus       388 ~-~~l~~aDlVIEAV--------------~E~l~iK~~vf~~le~~~~~~aIl--ASNTSsl---~i~~ia~~~--~~p~  445 (742)
T 3zwc_A          388 T-KELSTVDLVVEAV--------------FEDMNLKKKVFAELSALCKPGAFL--CTNTSAL---NVDDIASST--DRPQ  445 (742)
T ss_dssp             G-GGGGSCSEEEECC--------------CSCHHHHHHHHHHHHHHSCTTCEE--EECCSSS---CHHHHHTTS--SCGG
T ss_pred             H-HHHhhCCEEEEec--------------cccHHHHHHHHHHHhhcCCCCceE--EecCCcC---ChHHHHhhc--CCcc
Confidence            4 6799999999986              3568899999999999985 5655  8998875   345554433  3468


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      |++|+
T Consensus       446 r~ig~  450 (742)
T 3zwc_A          446 LVIGT  450 (742)
T ss_dssp             GEEEE
T ss_pred             ccccc
Confidence            89996

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=98.81  E-value=1.9e-08  Score=88.12  Aligned_cols=165  Identities=16%  Similarity=0.156  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      +|||.|+||+|++|++++..|...|.  +|+.++++.....   +.....  ...++. ..++.++++++|+||.+|+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~---~~~~~~--~~~Dl~-~~~~~~~~~~~d~Vih~a~~~   73 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGN--TPIILTRSIGNKA---INDYEY--RVSDYT-LEDLINQLNDVDAVVHLAATR   73 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCC--------CCEE--EECCCC-HHHHHHHTTTCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCCccc---CCceEE--EEcccc-HHHHHHhhcCCCEEEEccccC
Confidence            47999999999999999999999987  8999999743222   221100  000111 234667889999999999864


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHH
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE  179 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~  179 (258)
                      ...  ...+.+..|+...+.+++.+.+.+.+- +|.+|. ..+...--...+.......|....|.+.....++...+++
T Consensus        74 ~~~--~~~~~~~~n~~~~~~ll~a~~~~~~~r-~v~~SS-~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~~  149 (311)
T 3m2p_A           74 GSQ--GKISEFHDNEILTQNLYDACYENNISN-IVYAST-ISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYSR  149 (311)
T ss_dssp             CSS--SCGGGTHHHHHHHHHHHHHHHHTTCCE-EEEEEE-GGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC--ChHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEcc-HHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence            332  344567889999999999998877553 443432 1000000000000001112223334444445555566666


Q ss_pred             HhCCCCCcee-EEEEecC
Q 025075          180 VLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       180 ~l~v~~~~v~-~~v~G~h  196 (258)
                      ..+++..-++ ..++|..
T Consensus       150 ~~g~~~~ilRp~~v~G~~  167 (311)
T 3m2p_A          150 KKGLCIKNLRFAHLYGFN  167 (311)
T ss_dssp             HSCCEEEEEEECEEECSC
T ss_pred             HcCCCEEEEeeCceeCcC
Confidence            6777776777 4678865

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.80  E-value=1e-08  Score=89.72  Aligned_cols=119  Identities=17%  Similarity=0.242  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHH-Hh--------c--CCC-------CCeEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-IS--------H--MDT-------GAVVRGFLGQP   80 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~d-l~--------~--~~~-------~~~v~~~~~~~   80 (258)
                      ++||+|||+ |.+|+.++..|+..|+  +|++||++++... ..+ +.        .  ...       ...+.   .++
T Consensus         4 ~~kV~VIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~---~~~   77 (283)
T 4e12_A            4 ITNVTVLGT-GVLGSQIAFQTAFHGF--AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIR---YSD   77 (283)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCE---EES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeE---EeC
Confidence            469999998 9999999999999998  9999999874211 111 00        0  000       00122   235


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |+++++++||+||.++.              .+.+..+++.+.+.++. |++++  +||.....   ++++.....  .+
T Consensus        78 ~~~~~~~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~il--~s~tS~~~---~~~la~~~~--~~  136 (283)
T 4e12_A           78 DLAQAVKDADLVIEAVP--------------ESLDLKRDIYTKLGELAPAKTIF--ATNSSTLL---PSDLVGYTG--RG  136 (283)
T ss_dssp             CHHHHTTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHHHHS--CG
T ss_pred             CHHHHhccCCEEEEecc--------------CcHHHHHHHHHHHHhhCCCCcEE--EECCCCCC---HHHHHhhcC--CC
Confidence            77788999999999972              12445566777777776 55655  44443321   223333332  24


Q ss_pred             CcEEEE
Q 025075          160 KKLLGV  165 (258)
Q Consensus       160 ~kviG~  165 (258)
                      .+++|+
T Consensus       137 ~~~ig~  142 (283)
T 4e12_A          137 DKFLAL  142 (283)
T ss_dssp             GGEEEE
T ss_pred             cceEEE
Confidence            567665

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.74  E-value=3.1e-08  Score=93.09  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=76.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC---------------CCeEEEEeCCCc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---------------GAVVRGFLGQPQ   81 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~---------------~~~v~~~~~~~d   81 (258)
                      ++++|||+|||+ |.||..++..|+..+...+|++||+++++...  +.....               ...+.   .++|
T Consensus         6 ~~~~mkI~VIG~-G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~--l~~g~~~i~e~gl~~~~~~~~~~~l~---~t~~   79 (481)
T 2o3j_A            6 FGKVSKVVCVGA-GYVGGPTCAMIAHKCPHITVTVVDMNTAKIAE--WNSDKLPIYEPGLDEIVFAARGRNLF---FSSD   79 (481)
T ss_dssp             SCCCCEEEEECC-STTHHHHHHHHHHHCTTSEEEEECSCHHHHHH--HTSSSCSSCCTTHHHHHHHHBTTTEE---EESC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH--HHCCCCCcCCCCHHHHHHHhhcCCEE---EECC
Confidence            456789999998 99999999999887322289999998653222  222110               01232   2457


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEE-ecCCCCCc
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNL-ISNPVNST  143 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv-~tNPvd~~  143 (258)
                      +.+++++||+||++.+.|.+.+.++.+ -..++..+.+.++.|.++.+ +.+|+. .|+|.+..
T Consensus        80 ~~~~~~~aDvvii~Vptp~~~~g~~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~  142 (481)
T 2o3j_A           80 IPKAIAEADLIFISVNTPTKMYGRGKG-MAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAA  142 (481)
T ss_dssp             HHHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHH
T ss_pred             HHHHhhcCCEEEEecCCcccccccccc-CCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHH
Confidence            778899999999999877654322222 12234456667777777654 444443 27888753

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.72  E-value=2.8e-08  Score=92.72  Aligned_cols=121  Identities=17%  Similarity=0.227  Sum_probs=78.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HH-HhcC-CC--------CCeEEEEeCCCc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----AD-ISHM-DT--------GAVVRGFLGQPQ   81 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~d-l~~~-~~--------~~~v~~~~~~~d   81 (258)
                      +++.+||+|||+ |.+|..+|..|+..|+  +|++||++++++..     ++ +... ..        ...+..   ++|
T Consensus        51 ~~~i~kVaVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~---t~d  124 (460)
T 3k6j_A           51 AYDVNSVAIIGG-GTMGKAMAICFGLAGI--ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI---TSD  124 (460)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE---ESC
T ss_pred             cccCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE---eCC
Confidence            445679999998 9999999999999998  99999998753211     11 1111 00        012332   356


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||.++.              ++..+.+++.+++.+++ |++++  +||.+..   -++++.....  .|.
T Consensus       125 l-~al~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~aIl--asnTSsl---~i~~ia~~~~--~p~  182 (460)
T 3k6j_A          125 F-HKLSNCDLIVESVI--------------EDMKLKKELFANLENICKSTCIF--GTNTSSL---DLNEISSVLR--DPS  182 (460)
T ss_dssp             G-GGCTTCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSSS---CHHHHHTTSS--SGG
T ss_pred             H-HHHccCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCCEE--EecCCCh---hHHHHHHhcc--CCc
Confidence            6 58999999999962              24566777888888887 45655  5665543   1234333322  346


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      +++|+
T Consensus       183 r~iG~  187 (460)
T 3k6j_A          183 NLVGI  187 (460)
T ss_dssp             GEEEE
T ss_pred             ceEEE
Confidence            77776

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.72  E-value=1e-07  Score=89.12  Aligned_cols=121  Identities=14%  Similarity=0.218  Sum_probs=75.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHH--------------HhcCCC-CCeEEEEeCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD--------------ISHMDT-GAVVRGFLGQP   80 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~d--------------l~~~~~-~~~v~~~~~~~   80 (258)
                      +++++||+|||+ |.+|..++..|+..|+  +|+++|++++... ..+              +..... ....+ +  ++
T Consensus        34 ~~~~~kV~VIGa-G~MG~~iA~~la~~G~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~-i--~~  107 (463)
T 1zcj_A           34 AQPVSSVGVLGL-GTMGRGIAISFARVGI--SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLR-F--SS  107 (463)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEE-E--ES
T ss_pred             cCCCCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhh-h--cC
Confidence            344579999998 9999999999999998  9999999864111 000              000000 11122 2  34


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |+ +++++||+||+++.              .+..+.+++.+.+.++.+ ++++  +||.+..-   ++++....  -.+
T Consensus       108 ~~-~~~~~aDlVIeaVp--------------e~~~~k~~v~~~l~~~~~~~~ii--~snTs~~~---~~~la~~~--~~~  165 (463)
T 1zcj_A          108 ST-KELSTVDLVVEAVF--------------EDMNLKKKVFAELSALCKPGAFL--CTNTSALN---VDDIASST--DRP  165 (463)
T ss_dssp             CG-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHHTTS--SCG
T ss_pred             CH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCCcC---HHHHHHHh--cCC
Confidence            66 67999999999972              135556677777887764 5655  45766542   23333222  124


Q ss_pred             CcEEEE
Q 025075          160 KKLLGV  165 (258)
Q Consensus       160 ~kviG~  165 (258)
                      .+++|+
T Consensus       166 ~~~ig~  171 (463)
T 1zcj_A          166 QLVIGT  171 (463)
T ss_dssp             GGEEEE
T ss_pred             cceEEe
Confidence            677776

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.70  E-value=9.5e-08  Score=89.04  Aligned_cols=110  Identities=17%  Similarity=0.197  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--------------CCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~~~d~~~a~   86 (258)
                      |||+|||+ |.||..++..|+..|+  +|++||+++++...+.-.....              ...+.   .++|+++++
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~--~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~---~t~d~~ea~   76 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGA--NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLR---FGTEIEQAV   76 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEE---EESCHHHHG
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCC--EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEE---EECCHHHHH
Confidence            79999998 9999999999999998  9999999875322211110000              11233   246788889


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec-CCCCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS-NPVNS  142 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t-NPvd~  142 (258)
                      ++||+||++.+.|.+++.      ..++..++++++.+.++. ++.+|+..| -|.++
T Consensus        77 ~~aDvViiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  128 (450)
T 3gg2_A           77 PEADIIFIAVGTPAGEDG------SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGS  128 (450)
T ss_dssp             GGCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTH
T ss_pred             hcCCEEEEEcCCCcccCC------CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcc
Confidence            999999999987654432      223455677777777765 445554443 35543

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=98.69  E-value=3.8e-08  Score=87.40  Aligned_cols=158  Identities=15%  Similarity=0.163  Sum_probs=97.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..++|||.|+||+|++|++++..|+..|.  +|+.+|++...      ....   .+. ++....++.++++++|+||.+
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~------~~~~---~~~~Dl~d~~~~~~~~~~~d~vih~   84 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGR--TVRGFDLRPSG------TGGE---EVVGSLEDGQALSDAIMGVSAVLHL   84 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTC--CEEEEESSCCS------SCCS---EEESCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCC------CCcc---EEecCcCCHHHHHHHHhCCCEEEEC
Confidence            33457899999999999999999999987  89999987643      0000   010 011112356778999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--------CCCCcHHHHHHHHHHhCCCCCCcEEEEee
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--------PVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--------Pvd~~~~i~t~~~~~~~~~~~~kviG~t~  167 (258)
                      |+..........+.+..|+.....+++.+.+.+.. .+|.+|.        |...   .++    .....++...+|.+.
T Consensus        85 A~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~---~~~----E~~~~~~~~~Y~~sK  156 (347)
T 4id9_A           85 GAFMSWAPADRDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFL---PVT----EDHPLCPNSPYGLTK  156 (347)
T ss_dssp             CCCCCSSGGGHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSS---SBC----TTSCCCCCSHHHHHH
T ss_pred             CcccCcchhhHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCC---CcC----CCCCCCCCChHHHHH
Confidence            98654333334667888999999999999887644 3444443        1110   000    111123333444455


Q ss_pred             ccHHHHHHHHHHHhCCCCCcee-EEEE
Q 025075          168 LDVVRANTFVAEVLGLDPRDVD-VPVV  193 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~-~~v~  193 (258)
                      ....++...+++..+++..-++ ..++
T Consensus       157 ~~~E~~~~~~~~~~~~~~~ilRp~~v~  183 (347)
T 4id9_A          157 LLGEELVRFHQRSGAMETVILRFSHTQ  183 (347)
T ss_dssp             HHHHHHHHHHHHHSSSEEEEEEECEEE
T ss_pred             HHHHHHHHHHHHhcCCceEEEccceEe
Confidence            5555666666677788777777 4577

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.69  E-value=1.1e-07  Score=83.78  Aligned_cols=101  Identities=15%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--------HH-H-hcCCCC-------------CeEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--------AD-I-SHMDTG-------------AVVRG   75 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--------~d-l-~~~~~~-------------~~v~~   75 (258)
                      +++||+|||+ |.+|..++..|+..|+  +|++||++++....        ++ + ......             ..+..
T Consensus        14 ~~~~I~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~   90 (302)
T 1f0y_A           14 IVKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT   90 (302)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEE
Confidence            4568999998 9999999999999887  99999998642111        00 0 111000             02322


Q ss_pred             EeCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           76 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        76 ~~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                         ++|+++++++||+||++..              .+..+.+++.+.+.++. |++++  +||...
T Consensus        91 ---~~~~~~~~~~aD~Vi~avp--------------~~~~~~~~v~~~l~~~~~~~~iv--~s~ts~  138 (302)
T 1f0y_A           91 ---STDAASVVHSTDLVVEAIV--------------ENLKVKNELFKRLDKFAAEHTIF--ASNTSS  138 (302)
T ss_dssp             ---ESCHHHHTTSCSEEEECCC--------------SCHHHHHHHHHHHTTTSCTTCEE--EECCSS
T ss_pred             ---ecCHHHhhcCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EECCCC
Confidence               3577778999999999962              12344566777787776 45655  444433

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=98.68  E-value=2.7e-08  Score=88.52  Aligned_cols=169  Identities=15%  Similarity=0.049  Sum_probs=102.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC---CCeEEEEeC----CCchHhhhCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLG----QPQLENALTG   88 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~----~~d~~~a~~~   88 (258)
                      +++|||.|+||+|++|++++..|...|.  +|+.+++...  .....++.....   ...+..+.+    ..++.+++++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~  100 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQ--VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKG  100 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTT
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcC
Confidence            3457999999999999999999999887  8999998663  222222222100   012222221    1235677889


Q ss_pred             CCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC------CCCcHHHHHHHHHHhCCCCCC
Q 025075           89 MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        89 aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP------vd~~~~i~t~~~~~~~~~~~~  160 (258)
                      +|+||.+|+....+.  .+..+.+..|+.....+++.+.+.+..- +|.+|..      .+.   .+    .......+.
T Consensus       101 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~v~~SS~~vyg~~~~~---~~----~E~~~~~p~  172 (351)
T 3ruf_A          101 VDHVLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQS-FTYAASSSTYGDHPAL---PK----VEENIGNPL  172 (351)
T ss_dssp             CSEEEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSE-EEEEEEGGGGTTCCCS---SB----CTTCCCCCC
T ss_pred             CCEEEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEecHHhcCCCCCC---CC----ccCCCCCCC
Confidence            999999998532111  1234567889999999999998886543 4434321      110   00    001111222


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ...|.+.+...++...+++..|++..-++ +.++|..
T Consensus       173 ~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  209 (351)
T 3ruf_A          173 SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRR  209 (351)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcC
Confidence            33344445555666667777788888888 4688875

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=98.66  E-value=6.4e-08  Score=84.52  Aligned_cols=155  Identities=19%  Similarity=0.156  Sum_probs=98.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC---CCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||.|+||+|++|++++..|...|.  +|+.+|++......  ..+.    .+..+.+   ..++.+++++ |+||++|+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGY--EVVVVDNLSSGRRE--FVNP----SAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSCCGG--GSCT----TSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCC--EEEEEeCCCCCchh--hcCC----CceEEECccccHHHHhhcCC-CEEEECCC
Confidence            6899999999999999999999987  89999987642111  1111    1111110   1124556677 99999998


Q ss_pred             CCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC----------CCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN----------PVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        98 ~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN----------Pvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      .+...  .......+..|+.....+++.+.+.+.. .+|.+|.          |.+           .....++....|.
T Consensus        72 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~-----------e~~~~~p~~~Y~~  139 (312)
T 3ko8_A           72 NPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTP-----------EEEPYKPISVYGA  139 (312)
T ss_dssp             SCSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBC-----------TTSCCCCCSHHHH
T ss_pred             CCCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCC-----------CCCCCCCCChHHH
Confidence            54221  1234556788999999999999887644 3444432          111           0111233344444


Q ss_pred             eeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.....++-..+++..+++..-++ +.++|..
T Consensus       140 sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~  171 (312)
T 3ko8_A          140 AKAAGEVMCATYARLFGVRCLAVRYANVVGPR  171 (312)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeccccCcC
Confidence            555555666677777888877777 4788875

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=98.65  E-value=8.6e-08  Score=84.57  Aligned_cols=174  Identities=13%  Similarity=0.017  Sum_probs=98.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--CchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~~aDiVIi   94 (258)
                      +.|||.|+||+|++|++++..|...|...+|+.+|+.........+.+......+..+.+  +  .++.+++.++|+||+
T Consensus         2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   81 (336)
T 2hun_A            2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVH   81 (336)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEE
Confidence            347999999999999999999888762128999998642111111111110112322221  1  134566789999999


Q ss_pred             cCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC--Cc-HHHHHHHHHHhCCCCCCcEEEEeecc
Q 025075           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--ST-VPIAAEVFKKAGTYDPKKLLGVTMLD  169 (258)
Q Consensus        95 ~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd--~~-~~i~t~~~~~~~~~~~~kviG~t~ld  169 (258)
                      +||.....  ..+..+.+..|+.....+++.+.+......+|.+|...-  .. ...++    .....++....+.+...
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~----E~~~~~~~~~Y~~sK~~  157 (336)
T 2hun_A           82 LAAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFT----ENDRLMPSSPYSATKAA  157 (336)
T ss_dssp             CCCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBC----TTBCCCCCSHHHHHHHH
T ss_pred             CCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcC----CCCCCCCCCccHHHHHH
Confidence            99864210  012345678899999999999988854456665552100  00 00000    00112333334444444


Q ss_pred             HHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          170 VVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..++-..+++.++++..-++ +.++|..
T Consensus       158 ~e~~~~~~~~~~~~~~~ilrp~~v~g~~  185 (336)
T 2hun_A          158 SDMLVLGWTRTYNLNASITRCTNNYGPY  185 (336)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHhCCCEEEEeeeeeeCcC
Confidence            45555666677777766666 4677865

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.64  E-value=3e-07  Score=83.18  Aligned_cols=113  Identities=14%  Similarity=0.176  Sum_probs=76.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--------CCCeEEEEeCCCchHhhhCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------TGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--------~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      ++|||+|||+ |.+|.+++..|+..|+  +|.+||++++....+.-.+..        .+..+..   ++|+.+++++||
T Consensus        28 ~~mkI~VIGa-G~mG~alA~~La~~G~--~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~---t~d~~ea~~~aD  101 (356)
T 3k96_A           28 FKHPIAILGA-GSWGTALALVLARKGQ--KVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKA---YCDLKASLEGVT  101 (356)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEE---ESCHHHHHTTCC
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEE---ECCHHHHHhcCC
Confidence            4579999998 9999999999999987  899999976432222111110        1122332   467888999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHH
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~  153 (258)
                      +||++..                ...++++++.+..+. |+.+++.++|.++.-+..+++.+.+
T Consensus       102 vVilaVp----------------~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~  149 (356)
T 3k96_A          102 DILIVVP----------------SFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT  149 (356)
T ss_dssp             EEEECCC----------------HHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH
T ss_pred             EEEECCC----------------HHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH
Confidence            9999862                124577778888775 5778888888665321233444444

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.64  E-value=1.1e-07  Score=93.43  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=75.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-H----HHH----hcCC---------CCCeEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-T----ADI----SHMD---------TGAVVRGFLGQP   80 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~----~dl----~~~~---------~~~~v~~~~~~~   80 (258)
                      +++||+|||+ |.+|+.++..|+..|+  +|++||++++... .    .+.    ....         ....+..   ++
T Consensus       311 ~~~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~  384 (725)
T 2wtb_A          311 KIKKVAIIGG-GLMGSGIATALILSNY--PVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKG---SL  384 (725)
T ss_dssp             CCCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEE---ES
T ss_pred             cCcEEEEEcC-CHhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEE---eC
Confidence            4578999998 9999999999999998  8999999874211 0    010    0000         0112332   34


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |+ +++++||+||.+..              .+..+.+++...+.++++ ++++  +||.+..   .++++....  -.+
T Consensus       385 d~-~~~~~aDlVIeaVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntStl---~i~~la~~~--~~p  442 (725)
T 2wtb_A          385 DY-ESFRDVDMVIEAVI--------------ENISLKQQIFADLEKYCPQHCIL--ASNTSTI---DLNKIGERT--KSQ  442 (725)
T ss_dssp             SS-GGGTTCSEEEECCC--------------SCHHHHHHHHHHHHHHSCTTCEE--EECCSSS---CHHHHTTTC--SCT
T ss_pred             CH-HHHCCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EeCCCCC---CHHHHHHHh--cCC
Confidence            66 68999999999962              235556777788888875 4544  6776653   123333222  234


Q ss_pred             CcEEEE
Q 025075          160 KKLLGV  165 (258)
Q Consensus       160 ~kviG~  165 (258)
                      ++++|+
T Consensus       443 ~~~iG~  448 (725)
T 2wtb_A          443 DRIVGA  448 (725)
T ss_dssp             TTEEEE
T ss_pred             CCEEEe
Confidence            567775

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.64  E-value=3.3e-07  Score=84.15  Aligned_cols=108  Identities=19%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--------------CCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~~~d~~~a~   86 (258)
                      |||+|||+ |.||..++..|+. |+  +|.++|+++++...  +.....              ...+.   .++++.+++
T Consensus         1 MkI~VIG~-G~vG~~~A~~La~-G~--~V~~~d~~~~~~~~--l~~~~~~i~e~~l~~~~~~~~~~l~---~t~~~~~~~   71 (402)
T 1dlj_A            1 MKIAVAGS-GYVGLSLGVLLSL-QN--EVTIVDILPSKVDK--INNGLSPIQDEYIEYYLKSKQLSIK---ATLDSKAAY   71 (402)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTT-TS--EEEEECSCHHHHHH--HHTTCCSSCCHHHHHHHHHSCCCEE---EESCHHHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHhC-CC--EEEEEECCHHHHHH--HHcCCCCcCCCCHHHHHHhccCcEE---EeCCHHHHh
Confidence            69999998 9999999999998 76  89999998643222  222111              01222   235667789


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNS  142 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~  142 (258)
                      ++||+||++...+...+..+.|     +..+.++++.+.+..|+.+|+. .|||.+.
T Consensus        72 ~~aDvviiavpt~~~~~~~~~d-----l~~v~~v~~~i~~l~~~~iVV~~ST~~~g~  123 (402)
T 1dlj_A           72 KEAELVIIATPTNYNSRINYFD-----TQHVETVIKEVLSVNSHATLIIKSTIPIGF  123 (402)
T ss_dssp             HHCSEEEECCCCCEETTTTEEC-----CHHHHHHHHHHHHHCSSCEEEECSCCCTTH
T ss_pred             cCCCEEEEecCCCcccCCCCcc-----HHHHHHHHHHHHhhCCCCEEEEeCCCCccH
Confidence            9999999998665322222333     2234444555544457777766 7999984

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=98.61  E-value=1.5e-07  Score=83.48  Aligned_cols=171  Identities=12%  Similarity=0.045  Sum_probs=99.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCC--CCE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDL   91 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aDi   91 (258)
                      +++|||.|+||+|++|++++..|...|..-+|+..|+.........+........+..+.+    ..++.+++++  +|+
T Consensus        22 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~  101 (346)
T 4egb_A           22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQV  101 (346)
T ss_dssp             --CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCCE
T ss_pred             cCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCCE
Confidence            3457999999999999999999998874338888887652111112222211123332221    1234566776  999


Q ss_pred             EEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-------CCCcHHHHHHHHHHhCCCCCCcE
Q 025075           92 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-------VNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        92 VIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-------vd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ||.+|+.....  .....+.+..|+.....+++.+.+.+.. .+|.+|..       .+.   .+    .......+...
T Consensus       102 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~~---~~----~E~~~~~p~~~  173 (346)
T 4egb_A          102 IVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKTG---RF----TEETPLAPNSP  173 (346)
T ss_dssp             EEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSSC---CB----CTTSCCCCCSH
T ss_pred             EEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcCC---Cc----CCCCCCCCCCh
Confidence            99999864321  1234557788999999999999887654 34444321       000   00    01111223334


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +|.+.....++...+++..+++..-++ +.++|..
T Consensus       174 Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~  208 (346)
T 4egb_A          174 YSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPY  208 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             hHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcC
Confidence            444544455566666777788877777 5688865

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.60  E-value=1.3e-07  Score=83.32  Aligned_cols=172  Identities=15%  Similarity=0.016  Sum_probs=94.9

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCCCCCeEEEEeC----CCchHhhhCC
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLG----QPQLENALTG   88 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~   88 (258)
                      .+.+++||.|+||+|++|++++..|...|.  +|+++|++....   ...++..   ...+..+.+    ..++.+++++
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~   84 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGI---EGDIQYEDGDMADACSVQRAVIK   84 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTC---GGGEEEEECCTTCHHHHHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCCccccccchhhccc---cCceEEEECCCCCHHHHHHHHHH
Confidence            356678999999999999999999998886  899999876421   1112211   112222221    1134455665


Q ss_pred             --CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCc---HHHHHHHHHHhCCCCCCc
Q 025075           89 --MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST---VPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        89 --aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~---~~i~t~~~~~~~~~~~~k  161 (258)
                        .|+||.+|+.....  ..+..+.+..|+.....+++.+.+.+....+|.+|...-.-   ...++    ......+..
T Consensus        85 ~~~d~Vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~----E~~~~~p~~  160 (335)
T 1rpn_A           85 AQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQD----ENTPFYPRS  160 (335)
T ss_dssp             HCCSEEEECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBC----TTSCCCCCS
T ss_pred             cCCCEEEECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCC----cccCCCCCC
Confidence              59999999864311  12345567889999999999998876434555554311000   00000    000112222


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      ..|.+.....++...+++..+++..-++. .++|..
T Consensus       161 ~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~  196 (335)
T 1rpn_A          161 PYGVAKLYGHWITVNYRESFGLHASSGILFNHESPL  196 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCC
Confidence            33334444445555566666766555553 366653

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=98.60  E-value=1.7e-07  Score=82.75  Aligned_cols=110  Identities=20%  Similarity=0.183  Sum_probs=70.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi   94 (258)
                      ++|||.|+||+|++|++++..|...|.  +|+++|++.....  ++.+.    .+..+.+    ..++.++++++|+||+
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~l~~~----~~~~~~~Dl~d~~~~~~~~~~~d~vih   83 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGH--DLVLIHRPSSQIQ--RLAYL----EPECRVAEMLDHAGLERALRGLDGVIF   83 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECTTSCGG--GGGGG----CCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecChHhhh--hhccC----CeEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            457999999999999999999999886  9999998764321  12211    1111111    1235677899999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +++..........+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        84 ~a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~S  125 (342)
T 2x4g_A           84 SAGYYPSRPRRWQEEVASALGQTNPFYAACLQARVP-RILYVG  125 (342)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEEC
T ss_pred             CCccCcCCCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEC
Confidence            998643222344567788999999999999887643 344444

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=98.59  E-value=9.4e-08  Score=83.70  Aligned_cols=166  Identities=14%  Similarity=0.101  Sum_probs=94.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe---CCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL---GQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~---~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||.|+||+|++|++++..|...|.  .+.+.+.+......   ...    .+..+.   ...++.++++++|+||.+|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~v~~~~~~~~~~~~---~~~----~~~~~~~Dl~~~~~~~~~~~~d~vih~a   71 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESNE--IVVIDNLSSGNEEF---VNE----AARLVKADLAADDIKDYLKGAEEVWHIA   71 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTSC--EEEECCCSSCCGGG---SCT----TEEEECCCTTTSCCHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--EEEEEcCCCCChhh---cCC----CcEEEECcCChHHHHHHhcCCCEEEECC
Confidence            46899999999999999999998882  44443333221111   111    111111   0135667889999999999


Q ss_pred             CCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHH
Q 025075           97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN  174 (258)
Q Consensus        97 g~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~  174 (258)
                      +.+...  .....+.+..|+.....+++.+.+.+.. .+|.+|.- .+...--..........++...+|.+.....++.
T Consensus        72 ~~~~~~~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~-~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  149 (313)
T 3ehe_A           72 ANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTS-TVYGEAKVIPTPEDYPTHPISLYGASKLACEALI  149 (313)
T ss_dssp             CCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCG-GGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCChhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCch-HHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence            854221  2344567788999999999999887644 45545431 1000000000000011223333444444455666


Q ss_pred             HHHHHHhCCCCCcee-EEEEecC
Q 025075          175 TFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       175 ~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..+++.++++..-++ ..++|..
T Consensus       150 ~~~~~~~g~~~~ilRp~~v~G~~  172 (313)
T 3ehe_A          150 ESYCHTFDMQAWIYRFANVIGRR  172 (313)
T ss_dssp             HHHHHHTTCEEEEEECSCEESTT
T ss_pred             HHHHHhcCCCEEEEeeccccCcC
Confidence            667777787766677 4688865

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.59  E-value=3.8e-07  Score=85.53  Aligned_cols=115  Identities=14%  Similarity=0.123  Sum_probs=73.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCC--hhHHHHHhcCCC------------------CCeEEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT--PGVTADISHMDT------------------GAVVRGF   76 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~--~g~~~dl~~~~~------------------~~~v~~~   76 (258)
                      .++|||+|||+ |.||..+|..|+.. |+. +|++||++++  .+.+..+.....                  ...+.  
T Consensus        16 ~~~mkIaVIGl-G~mG~~lA~~la~~~G~~-~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~--   91 (478)
T 3g79_A           16 GPIKKIGVLGM-GYVGIPAAVLFADAPCFE-KVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE--   91 (478)
T ss_dssp             CSCCEEEEECC-STTHHHHHHHHHHSTTCC-EEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE--
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHhCCCC-eEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE--
Confidence            35679999998 99999999999998 764 8999999986  223333433211                  11233  


Q ss_pred             eCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCCC
Q 025075           77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNS  142 (258)
Q Consensus        77 ~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd~  142 (258)
                       .++| .+++++||+||++.+.|..+..++    ..++..+...++.|.++. |+.+++.- |-|..+
T Consensus        92 -~ttd-~ea~~~aDvViiaVptp~~~~~~~----~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgt  153 (478)
T 3g79_A           92 -CTPD-FSRISELDAVTLAIQTPFANPKDL----EPDFSALIDGIRNVGKYLKPGMLVVLESTITPGT  153 (478)
T ss_dssp             -EESC-GGGGGGCSEEEECCCCCCCSSCCS----SCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTT
T ss_pred             -EeCc-HHHHhcCCEEEEecCCchhccCCc----cccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHH
Confidence             2456 578999999999998776443210    123444566666676665 44555443 445554

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.58  E-value=1e-06  Score=74.04  Aligned_cols=112  Identities=15%  Similarity=0.112  Sum_probs=77.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      +.|||.|+||+|++|++++..|+..|.  +|++++++..+...  +.+.... .......+.++.++++++|+||.++|.
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~--~~~~~~~-~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH--EPVAMVRNEEQGPE--LRERGAS-DIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSGGGHHH--HHHTTCS-EEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC--eEEEEECChHHHHH--HHhCCCc-eEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            457999999999999999999999987  99999998653222  2211110 111011114567889999999999986


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...  ....+.+..|+.....+++.+.+.+.. .+|.+|.
T Consensus        95 ~~~--~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  131 (236)
T 3e8x_A           95 GPH--TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSS  131 (236)
T ss_dssp             CTT--SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             CCC--CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEec
Confidence            532  334556777888889999999887644 4555543

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.58  E-value=4.4e-07  Score=84.06  Aligned_cols=119  Identities=18%  Similarity=0.225  Sum_probs=74.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC----------------CCeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~~~d~~~   84 (258)
                      |||+|||+ |.||..++..|+..|+  +|.++|+++++...  +.....                ...+.   .++|+++
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~--~V~~~d~~~~~~~~--l~~~~~~i~e~~l~~~~~~~~~~g~l~---~t~~~~~   72 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTKIDL--INQGKSPIVEPGLEALLQQGRQTGRLS---GTTDFKK   72 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HhCCCCCcCCCCHHHHHHhhcccCceE---EeCCHHH
Confidence            69999997 9999999999999987  89999998653222  221100                11233   2457777


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CC---CcEEEEe-cCCCCCcHHHHHHHHHH
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CP---NATVNLI-SNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p---~a~viv~-tNPvd~~~~i~t~~~~~  153 (258)
                      ++++||+||++.+.|..... ..     ++..++++++.+.++ .|   +.+|+.. |+|.......+...+.+
T Consensus        73 ~~~~aDvviiaVptp~~~~~-~~-----dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           73 AVLDSDVSFICVGTPSKKNG-DL-----DLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             HHHTCSEEEECCCCCBCTTS-SB-----CCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HhccCCEEEEEcCCCcccCC-Cc-----chHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            89999999999876653221 11     223344455555544 34   5666554 78887523334444433

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=98.56  E-value=6.8e-08  Score=83.20  Aligned_cols=105  Identities=15%  Similarity=0.131  Sum_probs=74.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiVIi   94 (258)
                      ++++|.|+||+|++|++++..|+..|.  +|++.|+++.+..     .    ..+..+.    ...++.++++++|+||+
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~--~V~~~~r~~~~~~-----~----~~~~~~~~Dl~d~~~~~~~~~~~D~vi~   70 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAE--ILRLADLSPLDPA-----G----PNEECVQCDLADANAVNAMVAGCDGIVH   70 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEE--EEEEEESSCCCCC-----C----TTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCC--EEEEEecCCcccc-----C----CCCEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            346799999999999999999998886  8999999764211     0    0111111    11245677889999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +||...  ...-.+.+..|+.-...+++.+.+.... .||++|
T Consensus        71 ~Ag~~~--~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~S  110 (267)
T 3rft_A           71 LGGISV--EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFAS  110 (267)
T ss_dssp             CCSCCS--CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             CCCCcC--cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            998742  2234567788999999999999877644 444443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.56  E-value=1e-06  Score=76.90  Aligned_cols=98  Identities=12%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++|||+|||+ |.+|.+++..|...|+ ..+|.++|+++++...  +... +  .+..   +.|..++++++|+||++. 
T Consensus         2 ~~~~I~iIG~-G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~--l~~~-~--gi~~---~~~~~~~~~~aDvVilav-   71 (280)
T 3tri_A            2 NTSNITFIGG-GNMARNIVVGLIANGYDPNRICVTNRSLDKLDF--FKEK-C--GVHT---TQDNRQGALNADVVVLAV-   71 (280)
T ss_dssp             CCSCEEEESC-SHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHH--HHHT-T--CCEE---ESCHHHHHSSCSEEEECS-
T ss_pred             CCCEEEEEcc-cHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHH--HHHH-c--CCEE---eCChHHHHhcCCeEEEEe-
Confidence            4579999998 9999999999998885 4589999998753222  2221 1  1222   245678899999999997 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNPvd  141 (258)
                         +|..            +.++++.+..+  .++.+++.+++.+.
T Consensus        72 ---~p~~------------~~~vl~~l~~~~l~~~~iiiS~~agi~  102 (280)
T 3tri_A           72 ---KPHQ------------IKMVCEELKDILSETKILVISLAVGVT  102 (280)
T ss_dssp             ---CGGG------------HHHHHHHHHHHHHTTTCEEEECCTTCC
T ss_pred             ---CHHH------------HHHHHHHHHhhccCCCeEEEEecCCCC
Confidence               2211            34555556554  46668877777776

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.54  E-value=6.2e-08  Score=80.80  Aligned_cols=104  Identities=14%  Similarity=0.113  Sum_probs=71.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi~   95 (258)
                      ||||.|+||+|++|++++..|...|.  +|+++++++.....  +.     ..+..+.+    ..++.++++++|+||.+
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   74 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNRGF--EVTAVVRHPEKIKI--EN-----EHLKVKKADVSSLDEVCEVCKGADAVISA   74 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTTTC--EEEEECSCGGGCCC--CC-----TTEEEECCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEEcCcccchh--cc-----CceEEEEecCCCHHHHHHHhcCCCEEEEe
Confidence            57999999999999999999999986  99999997642111  10     12222211    12456788999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +|....    ..+++..|+...+.+++.+.+.+.+ .++.+|
T Consensus        75 a~~~~~----~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~S  111 (227)
T 3dhn_A           75 FNPGWN----NPDIYDETIKVYLTIIDGVKKAGVN-RFLMVG  111 (227)
T ss_dssp             CCC----------CCSHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             CcCCCC----ChhHHHHHHHHHHHHHHHHHHhCCC-EEEEeC
Confidence            975421    2235667899999999999887654 444444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=98.53  E-value=1.9e-07  Score=82.59  Aligned_cols=166  Identities=15%  Similarity=0.082  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhhC--CCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENALT--GMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~--~aDi   91 (258)
                      +|+|.|+||+|++|++++..|+..|.  +|+++|++...  ....++.... ...+..+.    ...++.++++  ++|+
T Consensus         5 ~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~   81 (341)
T 3enk_A            5 KGTILVTGGAGYIGSHTAVELLAHGY--DVVIADNLVNSKREAIARIEKIT-GKTPAFHETDVSDERALARIFDAHPITA   81 (341)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCCSSSCTHHHHHHHHHH-SCCCEEECCCTTCHHHHHHHHHHSCCCE
T ss_pred             CcEEEEecCCcHHHHHHHHHHHHCCC--cEEEEecCCcchHHHHHHHHhhc-CCCceEEEeecCCHHHHHHHHhccCCcE
Confidence            46999999999999999999999987  89999987641  1111221100 00111111    1123455666  8999


Q ss_pred             EEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC------CCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           92 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        92 VIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN------Pvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ||++|+.....  .....+.+..|+.....+++.+.+.+.. .+|++|.      |.+.   .+    ......++....
T Consensus        82 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~---~~----~e~~~~~~~~~Y  153 (341)
T 3enk_A           82 AIHFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERS---PI----DETFPLSATNPY  153 (341)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSS---SB----CTTSCCBCSSHH
T ss_pred             EEECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCC---CC----CCCCCCCCCChh
Confidence            99999864211  1123456788999999999999887654 4444432      1100   00    001112233344


Q ss_pred             EEeeccHHHHHHHHHHHhC-CCCCcee-EEEEecC
Q 025075          164 GVTMLDVVRANTFVAEVLG-LDPRDVD-VPVVGGH  196 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~-v~~~~v~-~~v~G~h  196 (258)
                      |.+.....++...+++..+ ++..-++ ..++|.+
T Consensus       154 ~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~  188 (341)
T 3enk_A          154 GQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAH  188 (341)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCC
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCc
Confidence            4454445556666666665 5555566 4688875

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.53  E-value=3.9e-07  Score=84.39  Aligned_cols=111  Identities=20%  Similarity=0.235  Sum_probs=69.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--------------CCeEEEEeCCCchH
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--------------GAVVRGFLGQPQLE   83 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--------------~~~v~~~~~~~d~~   83 (258)
                      .++|||+|||+ |.||.+++..|++ |+  +|++||+++++...  +.....              ...+.   .++|++
T Consensus        34 ~~~mkIaVIGl-G~mG~~lA~~La~-G~--~V~~~D~~~~~v~~--l~~g~~~i~e~~l~~ll~~~~~~l~---~ttd~~  104 (432)
T 3pid_A           34 SEFMKITISGT-GYVGLSNGVLIAQ-NH--EVVALDIVQAKVDM--LNQKISPIVDKEIQEYLAEKPLNFR---ATTDKH  104 (432)
T ss_dssp             -CCCEEEEECC-SHHHHHHHHHHHT-TS--EEEEECSCHHHHHH--HHTTCCSSCCHHHHHHHHHSCCCEE---EESCHH
T ss_pred             cCCCEEEEECc-CHHHHHHHHHHHc-CC--eEEEEecCHHHhhH--HhccCCccccccHHHHHhhccCCeE---EEcCHH
Confidence            34579999998 9999999999887 76  99999998753221  221100              01232   356888


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-cCCCCC
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS  142 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNPvd~  142 (258)
                      +++++||+||++...+..+.....     ++..+++.++.+.+..|+++++.- |-|..+
T Consensus       105 ea~~~aDvViiaVPt~~~~~~~~~-----Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          105 DAYRNADYVIIATPTDYDPKTNYF-----NTSTVEAVIRDVTEINPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             HHHTTCSEEEECCCCEEETTTTEE-----ECHHHHHHHHHHHHHCTTSEEEECSCCCTTH
T ss_pred             HHHhCCCEEEEeCCCccccccccc-----cHHHHHHHHHHHHhcCCCcEEEEeCCCChHH
Confidence            899999999999754422211111     223344445555554577766553 567763

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=98.52  E-value=2.2e-07  Score=82.73  Aligned_cols=176  Identities=14%  Similarity=0.013  Sum_probs=100.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC---CCeEEEEeC----CCchHhhhC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT---GAVVRGFLG----QPQLENALT   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~---~~~v~~~~~----~~d~~~a~~   87 (258)
                      +.++|||.|+||+|++|++++..|...|.  +|+++|++..  .....++.....   ...+..+.+    ..++.++++
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~  101 (352)
T 1sb8_A           24 PAQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA  101 (352)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred             CccCCeEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhc
Confidence            34567999999999999999999999887  8999998653  111111211000   012222211    123556788


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ++|+||.+|+.....  ..+..+.+..|+.....+++.+.+.+.. .+|.+|...-. ...-..........++....|.
T Consensus       102 ~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~-~~~~~~~~~E~~~~~~~~~Y~~  179 (352)
T 1sb8_A          102 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTY-GDHPGLPKVEDTIGKPLSPYAV  179 (352)
T ss_dssp             TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGG-TTCCCSSBCTTCCCCCCSHHHH
T ss_pred             CCCEEEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhc-CCCCCCCCCCCCCCCCCChhHH
Confidence            999999999854211  0123456678999899999988876543 44444421100 0000000000000112223333


Q ss_pred             eeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.....++...+++..+++..-++ +.++|..
T Consensus       180 sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~  211 (352)
T 1sb8_A          180 TKYVNELYADVFSRCYGFSTIGLRYFNVFGRR  211 (352)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEEEECceeCcC
Confidence            444445555566677788887777 4688875

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=98.51  E-value=1.1e-07  Score=84.29  Aligned_cols=165  Identities=14%  Similarity=0.054  Sum_probs=97.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFLG----QPQLENALTGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aD   90 (258)
                      ||||.|+||+|++|++++..|...  |.  +|+++|++...   ....++..    ..+..+.+    ..++.++++++|
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~d   77 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDV--HVTVLDKLTYAGNKANLEAILG----DRVELVVGDIADAELVDKLAAKAD   77 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTC--EEEEEECCCTTCCGGGTGGGCS----SSEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCC--EEEEEeCCCCCCChhHHhhhcc----CCeEEEECCCCCHHHHHHHhhcCC
Confidence            579999999999999999998887  55  89999986521   11112211    12222221    123556789999


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC--CCc---H----------HHHHHHHHH
Q 025075           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV--NST---V----------PIAAEVFKK  153 (258)
Q Consensus        91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv--d~~---~----------~i~t~~~~~  153 (258)
                      +||++||.....  ..+..+.+..|+.....+++.+.+.+.  .+|.+|...  ...   .          ..++    .
T Consensus        78 ~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~----E  151 (348)
T 1oc2_A           78 AIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFT----A  151 (348)
T ss_dssp             EEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBC----T
T ss_pred             EEEECCcccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccccccccccCCCcC----C
Confidence            999999864210  012245678899999999999988754  555554210  000   0          0000    0


Q ss_pred             hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ....++...++.+.....++-..+++.++++..-++ +.++|..
T Consensus       152 ~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~  195 (348)
T 1oc2_A          152 ETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  195 (348)
T ss_dssp             TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             CCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCC
Confidence            111223333444444445555666667777766666 4577865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.50  E-value=1e-06  Score=77.08  Aligned_cols=120  Identities=18%  Similarity=0.260  Sum_probs=70.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC---CC----eEEEEeCCCchHhhhCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GA----VVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~---~~----~v~~~~~~~d~~~a~~~aDi   91 (258)
                      +||||+|||+ |.+|+.++..|...|+  +|.++|+++++...+.-.....   ..    .+.... ..+..++++++|+
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~   77 (316)
T 2ew2_A            2 NAMKIAIAGA-GAMGSRLGIMLHQGGN--DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFS-PEEIDHQNEQVDL   77 (316)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEEC-GGGCCTTSCCCSE
T ss_pred             CCCeEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeec-chhhcccCCCCCE
Confidence            4679999998 9999999999999887  9999998764322211011000   00    011000 1122233459999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE-EE
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GV  165 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi-G~  165 (258)
                      ||++..    +            ..+.++++.+..+. |+.+++.++|..+.     .+.+.+  .+++.+++ |.
T Consensus        78 vi~~v~----~------------~~~~~v~~~l~~~l~~~~~iv~~~~g~~~-----~~~l~~--~~~~~~vi~g~  130 (316)
T 2ew2_A           78 IIALTK----A------------QQLDAMFKAIQPMITEKTYVLCLLNGLGH-----EDVLEK--YVPKENILVGI  130 (316)
T ss_dssp             EEECSC----H------------HHHHHHHHHHGGGCCTTCEEEECCSSSCT-----HHHHTT--TSCGGGEEEEE
T ss_pred             EEEEec----c------------ccHHHHHHHHHHhcCCCCEEEEecCCCCc-----HHHHHH--HcCCccEEEEE
Confidence            999962    1            11355666777664 67888888898773     122222  25666777 44

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.50  E-value=2.3e-07  Score=87.17  Aligned_cols=118  Identities=20%  Similarity=0.336  Sum_probs=73.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHH-----HhcCC----CC--------CeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TAD-----ISHMD----TG--------AVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~d-----l~~~~----~~--------~~v~~~~~~~d   81 (258)
                      .+||+|||+ |.+|..++..|+..|+  +|++||++++... ..+     +....    ..        ..+..   ++|
T Consensus         5 ~~kVgVIGa-G~MG~~IA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~   78 (483)
T 3mog_A            5 VQTVAVIGS-GTMGAGIAEVAASHGH--QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP---VTD   78 (483)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE---ECC
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE---eCC
Confidence            469999998 9999999999999998  8999999875211 110     11110    00        12332   356


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++++||+||.+..              .+..+.+++.+++.++++ ++++  +||.+..-   ++++.....  .+.
T Consensus        79 ~-~~~~~aDlVIeAVp--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSti~---i~~ia~~~~--~p~  136 (483)
T 3mog_A           79 I-HALAAADLVIEAAS--------------ERLEVKKALFAQLAEVCPPQTLL--TTNTSSIS---ITAIAAEIK--NPE  136 (483)
T ss_dssp             G-GGGGGCSEEEECCC--------------CCHHHHHHHHHHHHHHSCTTCEE--EECCSSSC---HHHHTTTSS--SGG
T ss_pred             H-HHhcCCCEEEEcCC--------------CcHHHHHHHHHHHHHhhccCcEE--EecCCCCC---HHHHHHHcc--Ccc
Confidence            6 57999999999862              135566777788888874 5555  45554431   222222221  345


Q ss_pred             cEEEE
Q 025075          161 KLLGV  165 (258)
Q Consensus       161 kviG~  165 (258)
                      +++|+
T Consensus       137 ~~ig~  141 (483)
T 3mog_A          137 RVAGL  141 (483)
T ss_dssp             GEEEE
T ss_pred             ceEEe
Confidence            67775

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=98.50  E-value=3.1e-07  Score=76.51  Aligned_cols=98  Identities=22%  Similarity=0.242  Sum_probs=65.0

Q ss_pred             CCCe-EEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCE
Q 025075           19 AGFK-VAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLG----QPQLENALTGMDL   91 (258)
Q Consensus        19 ~~~K-I~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDi   91 (258)
                      +||| |.|+||+|++|+.++..|+ ..|.  +|+++++++. +...  +.....  .+..+.+    ..++.++++++|+
T Consensus         3 ~mmk~vlVtGasg~iG~~~~~~l~~~~g~--~V~~~~r~~~~~~~~--~~~~~~--~~~~~~~D~~d~~~~~~~~~~~d~   76 (221)
T 3r6d_A            3 AMYXYITILGAAGQIAQXLTATLLTYTDM--HITLYGRQLKTRIPP--EIIDHE--RVTVIEGSFQNPGXLEQAVTNAEV   76 (221)
T ss_dssp             CSCSEEEEESTTSHHHHHHHHHHHHHCCC--EEEEEESSHHHHSCH--HHHTST--TEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             ceEEEEEEEeCCcHHHHHHHHHHHhcCCc--eEEEEecCccccchh--hccCCC--ceEEEECCCCCHHHHHHHHcCCCE
Confidence            4556 9999999999999999999 7887  8999998754 2221  210111  2222211    1245677899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ||+++|..             |+. .+.+++.+++.+.. .||++|
T Consensus        77 vv~~ag~~-------------n~~-~~~~~~~~~~~~~~-~iv~iS  107 (221)
T 3r6d_A           77 VFVGAMES-------------GSD-MASIVKALSRXNIR-RVIGVS  107 (221)
T ss_dssp             EEESCCCC-------------HHH-HHHHHHHHHHTTCC-EEEEEE
T ss_pred             EEEcCCCC-------------Chh-HHHHHHHHHhcCCC-eEEEEe
Confidence            99999743             344 77888888776544 444444

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.50  E-value=2.3e-07  Score=81.77  Aligned_cols=119  Identities=18%  Similarity=0.246  Sum_probs=73.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHH-hcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADI-SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl-~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+||+|||+ |.+|+.+|..|+ .|+  +|++||++++.. ...+. .+... ..+..   ++|++ ++++||+||.+.
T Consensus        11 ~~~~V~vIG~-G~MG~~iA~~la-aG~--~V~v~d~~~~~~~~~~~~l~~~~~-~~i~~---~~~~~-~~~~aDlVieav   81 (293)
T 1zej_A           11 HHMKVFVIGA-GLMGRGIAIAIA-SKH--EVVLQDVSEKALEAAREQIPEELL-SKIEF---TTTLE-KVKDCDIVMEAV   81 (293)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHSCGGGG-GGEEE---ESSCT-TGGGCSEEEECC
T ss_pred             CCCeEEEEee-CHHHHHHHHHHH-cCC--EEEEEECCHHHHHHHHHHHHHHHh-CCeEE---eCCHH-HHcCCCEEEEcC
Confidence            3469999998 999999999999 998  999999987521 12221 11100 12332   24554 489999999986


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeec
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~l  168 (258)
                      .              ++..+.+.+...+... |++++  +||.+..-   ++++....  -.+.|++|+-.+
T Consensus        82 p--------------e~~~vk~~l~~~l~~~-~~~Il--asntSti~---~~~~a~~~--~~~~r~~G~Hf~  131 (293)
T 1zej_A           82 F--------------EDLNTKVEVLREVERL-TNAPL--CSNTSVIS---VDDIAERL--DSPSRFLGVHWM  131 (293)
T ss_dssp             C--------------SCHHHHHHHHHHHHTT-CCSCE--EECCSSSC---HHHHHTTS--SCGGGEEEEEEC
T ss_pred             c--------------CCHHHHHHHHHHHhcC-CCCEE--EEECCCcC---HHHHHHHh--hcccceEeEEec
Confidence            2              2344556666677777 88876  45544321   12222222  224578887443

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=98.48  E-value=4.9e-07  Score=79.65  Aligned_cols=116  Identities=16%  Similarity=-0.012  Sum_probs=73.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCC--CCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aDiVI   93 (258)
                      .|||.|+||+|++|++++..|...|.  +|+++|++........+........+..+.+    ..++.+++++  .|+||
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   80 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY--EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVY   80 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEE
Confidence            46899999999999999999999887  9999998764221111111100112222211    1134455665  59999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++||.....  ..+..+.+..|+.....+++.+.+.+....+|.+|
T Consensus        81 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~S  126 (345)
T 2z1m_A           81 NLAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQAS  126 (345)
T ss_dssp             ECCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             ECCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEe
Confidence            999864211  12344567788888888998888765434555554

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=98.48  E-value=6.5e-07  Score=79.84  Aligned_cols=111  Identities=10%  Similarity=0.066  Sum_probs=73.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-----CCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aDiVI   93 (258)
                      .|+|.|+||+|++|++++..|...| .  +|+++|++........+.....  . ..+.....++++++     ++|+||
T Consensus        46 ~~~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~--~-~d~~~~~~~~~~~~~~~~~~~d~Vi  120 (357)
T 2x6t_A           46 GRMIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNI--A-DYMDKEDFLIQIMAGEEFGDVEAIF  120 (357)
T ss_dssp             --CEEEETTTSHHHHHHHHHHHHTTCC--CEEEEECCSSGGGGGGTTTSCC--S-EEEEHHHHHHHHHTTCCCSSCCEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCc--EEEEEecCCCcchhhcccCceE--e-eecCcHHHHHHHHhhcccCCCCEEE
Confidence            3689999999999999999999888 5  7999998754221111211111  1 11211223445565     599999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .+|+.......+..+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus       121 h~A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~S  162 (357)
T 2x6t_A          121 HEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  162 (357)
T ss_dssp             ECCSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             ECCcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            999865433334566788899999999999988765  444444

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=98.48  E-value=4.8e-07  Score=80.56  Aligned_cols=174  Identities=15%  Similarity=0.078  Sum_probs=96.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--CchHhhhC--CCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQLENALT--GMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~--~aDiVI   93 (258)
                      |||.|+||+|++|++++..|+.. +.  +|+++|++........+.+......+..+.+  +  .++.++++  ++|+||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   78 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQD--TVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVM   78 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSC--EEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCC--eEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            58999999999999999988876 55  8999998642111111111110112322221  1  13445666  899999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhh--CCC------cEEEEecCCC--CCcH---HHHH----HHHHHh
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC--CPN------ATVNLISNPV--NSTV---PIAA----EVFKKA  154 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~--~p~------a~viv~tNPv--d~~~---~i~t----~~~~~~  154 (258)
                      ++||.....  .....+.+..|+.....+++.+.+.  +.+      +.||.+|...  ....   ....    ..+...
T Consensus        79 h~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~  158 (361)
T 1kew_A           79 HLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTET  158 (361)
T ss_dssp             ECCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTT
T ss_pred             ECCCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCC
Confidence            999864310  0123456778888888888888877  533      3566555310  0000   0000    000000


Q ss_pred             CCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       155 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ...++....+.+.....++-..+++.++++..-++ +.|+|..
T Consensus       159 ~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~  201 (361)
T 1kew_A          159 TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY  201 (361)
T ss_dssp             SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTT
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCC
Confidence            11223333444444455566666777788777777 5678875

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=98.48  E-value=7.6e-07  Score=78.55  Aligned_cols=163  Identities=15%  Similarity=0.111  Sum_probs=94.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC---C---CCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEeC--C--CchHhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN---P---LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG--Q--PQLENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~---~---~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~   87 (258)
                      |||.|+||+|++|++++..|...   |   .  +|+++|+...   .....++..   ...+..+.+  +  .++.+++.
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~   75 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPAD--EVIVLDSLTYAGNRANLAPVDA---DPRLRFVHGDIRDAGLLARELR   75 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCS--EEEEEECCCTTCCGGGGGGGTT---CTTEEEEECCTTCHHHHHHHTT
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCce--EEEEEECCCccCchhhhhhccc---CCCeEEEEcCCCCHHHHHHHhc
Confidence            58999999999999999999885   5   4  8999998642   111111211   112222221  1  23456678


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC------CCcHHHHHHHHHHhCCCCC
Q 025075           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------NSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv------d~~~~i~t~~~~~~~~~~~  159 (258)
                      ++|+||++|+.....  ..+..+.+..|+.....+++.+.+.... .+|.+|...      +.   .++    .....++
T Consensus        76 ~~d~Vih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~---~~~----E~~~~~~  147 (337)
T 1r6d_A           76 GVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSG---SWT----ESSPLEP  147 (337)
T ss_dssp             TCCEEEECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSS---CBC----TTSCCCC
T ss_pred             CCCEEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCC---CCC----CCCCCCC
Confidence            999999999854210  0122456788999999999999887543 444444210      00   000    0011223


Q ss_pred             CcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ....|.+.....++-..+++..+++..-++ ..++|..
T Consensus       148 ~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~  185 (337)
T 1r6d_A          148 NSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (337)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             CCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCC
Confidence            333333444444555556666777776666 4677865

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.47  E-value=5e-07  Score=84.81  Aligned_cols=104  Identities=15%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC---C-------------CCeEEEEeCCCchH
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD---T-------------GAVVRGFLGQPQLE   83 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~---~-------------~~~v~~~~~~~d~~   83 (258)
                      .|||+|||+ |.||..++..|+..|+  +|.+||+++++-..  +....   .             ...+.   .++|++
T Consensus         8 ~~~I~VIG~-G~vG~~lA~~la~~G~--~V~~~d~~~~~v~~--l~~~~~~i~e~gl~~~l~~~~~~~~l~---~ttd~~   79 (478)
T 2y0c_A            8 SMNLTIIGS-GSVGLVTGACLADIGH--DVFCLDVDQAKIDI--LNNGGVPIHEPGLKEVIARNRSAGRLR---FSTDIE   79 (478)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHTTCCSSCCTTHHHHHHHHHHTTCEE---EECCHH
T ss_pred             CceEEEECc-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHCCCCCcCCCCHHHHHHHhcccCCEE---EECCHH
Confidence            589999998 9999999999999998  99999998652222  22110   0             01233   346777


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t  137 (258)
                      +++++||+||++...|.+...      .-++..++++++.|.++. |+.+|++.|
T Consensus        80 ~a~~~aDvviiaVptp~~~~~------~~dl~~v~~v~~~i~~~l~~~~iVV~~S  128 (478)
T 2y0c_A           80 AAVAHGDVQFIAVGTPPDEDG------SADLQYVLAAARNIGRYMTGFKVIVDKS  128 (478)
T ss_dssp             HHHHHCSEEEECCCCCBCTTS------SBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred             HHhhcCCEEEEEeCCCcccCC------CccHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            889999999999877654322      123445666777777765 455555443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=98.47  E-value=1.8e-06  Score=71.14  Aligned_cols=100  Identities=12%  Similarity=0.101  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC---CCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||.|+||+|++|++++..|+..|.  +|+++++++.+...  +. .    .+..+.+   ..+. +++.++|+||.++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~--~~-~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   70 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGH--EVTAIVRNAGKITQ--TH-K----DINILQKDIFDLTL-SDLSDQNVVVDAYG   70 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCSHHHHH--HC-S----SSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCC--EEEEEEcCchhhhh--cc-C----CCeEEeccccChhh-hhhcCCCEEEECCc
Confidence            6899999999999999999999987  99999998643222  22 1    1111111   1122 67899999999998


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .+...       ...|+...+.+++.+++.+. ..++++|.
T Consensus        71 ~~~~~-------~~~~~~~~~~l~~a~~~~~~-~~~v~~SS  103 (221)
T 3ew7_A           71 ISPDE-------AEKHVTSLDHLISVLNGTVS-PRLLVVGG  103 (221)
T ss_dssp             SSTTT-------TTSHHHHHHHHHHHHCSCCS-SEEEEECC
T ss_pred             CCccc-------cchHHHHHHHHHHHHHhcCC-ceEEEEec
Confidence            75321       23478888889998887643 34555554

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.46  E-value=2.9e-07  Score=78.89  Aligned_cols=93  Identities=15%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +++|||+|||+ |.+|+.++..|...|..  .+|.+||+++++       .     .+..   ..++.++++++|+||++
T Consensus         2 m~~m~i~iiG~-G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-------~-----g~~~---~~~~~~~~~~~D~vi~~   65 (262)
T 2rcy_A            2 MENIKLGFMGL-GQMGSALAHGIANANIIKKENLFYYGPSKKN-------T-----TLNY---MSSNEELARHCDIIVCA   65 (262)
T ss_dssp             CSSSCEEEECC-SHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-------S-----SSEE---CSCHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-------C-----ceEE---eCCHHHHHhcCCEEEEE
Confidence            44679999998 99999999999887731  379999998654       1     1221   24566788999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS  142 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~  142 (258)
                      ..    +..            +.++++.+..+.++..++..+|.++.
T Consensus        66 v~----~~~------------~~~v~~~l~~~l~~~~vv~~~~gi~~   96 (262)
T 2rcy_A           66 VK----PDI------------AGSVLNNIKPYLSSKLLISICGGLNI   96 (262)
T ss_dssp             SC----TTT------------HHHHHHHSGGGCTTCEEEECCSSCCH
T ss_pred             eC----HHH------------HHHHHHHHHHhcCCCEEEEECCCCCH
Confidence            62    211            35566667666677888888998883

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.46  E-value=1.1e-06  Score=81.42  Aligned_cols=124  Identities=19%  Similarity=0.161  Sum_probs=79.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC----------------CCCeEEEEeCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQP   80 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~~~   80 (258)
                      +.+|.+|+|||. |+||..++..|+..|+  +|+.+|+|+++-.  .|....                ...++.   .++
T Consensus        18 ~~~m~~IaViGl-GYVGLp~A~~~A~~G~--~V~g~Did~~kV~--~ln~G~~pi~Epgl~ell~~~~~~g~l~---~tt   89 (444)
T 3vtf_A           18 GSHMASLSVLGL-GYVGVVHAVGFALLGH--RVVGYDVNPSIVE--RLRAGRPHIYEPGLEEALGRALSSGRLS---FAE   89 (444)
T ss_dssp             TCCCCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEE---ECS
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHhCCC--cEEEEECCHHHHH--HHHCCCCCCCCCCHHHHHHHHHHcCCee---EEc
Confidence            345679999997 9999999999998888  9999999875211  122111                011333   356


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCC-chhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHH
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVF  151 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~-~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~  151 (258)
                      |..+++++||++|++.+.|.++.. ..+..   -....+.+++.++..++..+|++ -|=|+.+.-.++...+
T Consensus        90 ~~~~ai~~ad~~~I~VpTP~~~d~~~Dl~~---v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l  159 (444)
T 3vtf_A           90 SAEEAVAATDATFIAVGTPPAPDGSADLRY---VEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAV  159 (444)
T ss_dssp             SHHHHHHTSSEEEECCCCCBCTTSSBCCHH---HHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHH
T ss_pred             CHHHHHhcCCceEEEecCCCCCCCCCCcHH---HHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHH
Confidence            788899999999999998865532 22222   22344566666665555445444 4667765433333333

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=98.46  E-value=1.7e-06  Score=76.39  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=95.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHHHHHhcCCCCCeEEEEe----CCCchHhhhCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL----GQPQLENALTG   88 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~   88 (258)
                      +.+++||.|+||+|++|++++..|+..|.  +|+..+++...    ....++...   ..+..+.    ...++.+++++
T Consensus         6 ~~~~~~vlVTGatGfIG~~l~~~Ll~~G~--~V~~~~r~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~d~~~~~~~~~~   80 (338)
T 2rh8_A            6 PIGKKTACVVGGTGFVASLLVKLLLQKGY--AVNTTVRDPDNQKKVSHLLELQEL---GDLKIFRADLTDELSFEAPIAG   80 (338)
T ss_dssp             ---CCEEEEECTTSHHHHHHHHHHHHTTC--EEEEEESCTTCTTTTHHHHHHGGG---SCEEEEECCTTTSSSSHHHHTT
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCcchhhhHHHHHhcCCC---CcEEEEecCCCChHHHHHHHcC
Confidence            33457999999999999999999999887  88887776531    111123211   1222221    12346678999


Q ss_pred             CCEEEEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC---CCC------
Q 025075           89 MDLVIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG---TYD------  158 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~---~~~------  158 (258)
                      +|+||++|+.......+ ..+++..|+.-...+++.+.+...-..||.+|....    +.  .....+   .++      
T Consensus        81 ~D~Vih~A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~----~~--~~~~~~~~~~~~E~~~~~  154 (338)
T 2rh8_A           81 CDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAA----VT--INQLDGTGLVVDEKNWTD  154 (338)
T ss_dssp             CSEEEEESSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHH----HH--HHHHTCSCCCCCTTTTTC
T ss_pred             CCEEEEeCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHH----ee--cCCcCCCCcccChhhccc
Confidence            99999998753211111 123677899999999998887642235555553211    00  000000   000      


Q ss_pred             ---------CCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          159 ---------PKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       159 ---------~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                               +.-..+.+.....++...+++..|++..-++ +.|+|..
T Consensus       155 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~  202 (338)
T 2rh8_A          155 IEFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSS  202 (338)
T ss_dssp             C-------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCC
T ss_pred             hhhccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCC
Confidence                     0012444544445555556666788777777 5688875

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=98.45  E-value=7.6e-07  Score=73.85  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC---CCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---QPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||.|+||+|++|++++..|+..|.  +|++++++.....  ++...    .+..+.+   ..+. ++++++|+||.++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~--~~~~~----~~~~~~~D~~d~~~-~~~~~~d~vi~~ag   71 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGH--EVLAVVRDPQKAA--DRLGA----TVATLVKEPLVLTE-ADLDSVDAVVDALS   71 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HHTCT----TSEEEECCGGGCCH-HHHTTCSEEEECCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCC--EEEEEEecccccc--cccCC----CceEEecccccccH-hhcccCCEEEECCc
Confidence            6899999999999999999999987  9999998754222  22221    1111111   1122 67899999999998


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ....+..     ...|+...+.+++.+++.+  ..++++|
T Consensus        72 ~~~~~~~-----~~~n~~~~~~l~~a~~~~~--~~~v~~S  104 (224)
T 3h2s_A           72 VPWGSGR-----GYLHLDFATHLVSLLRNSD--TLAVFIL  104 (224)
T ss_dssp             CCTTSSC-----THHHHHHHHHHHHTCTTCC--CEEEEEC
T ss_pred             cCCCcch-----hhHHHHHHHHHHHHHHHcC--CcEEEEe
Confidence            7522221     3568888999999998876  4555554

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=98.44  E-value=1.1e-06  Score=76.34  Aligned_cols=109  Identities=10%  Similarity=0.086  Sum_probs=73.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC-----CCEEEEc
Q 025075           22 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG-----MDLVIIP   95 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~-----aDiVIi~   95 (258)
                      ||.|+||+|++|++++..|...| .  +|+++++........++........   +.....+.+++++     +|+||++
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~~~~~~~~d~vi~~   75 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGIT--DILVVDNLKDGTKFVNLVDLNIADY---MDKEDFLIQIMAGEEFGDVEAIFHE   75 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCC--CEEEEECCSSGGGGHHHHTSCCSEE---EEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCc--EEEEEccCCCCchhhhcCcceeccc---cccHHHHHHHHhccccCCCcEEEEC
Confidence            58999999999999999999888 5  8999998764221112222111111   1112234556664     9999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++.......+..+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus        76 a~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  115 (310)
T 1eq2_A           76 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS  115 (310)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEE
T ss_pred             cccccCcccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence            9865433334556778899999999999988765  444444

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.44  E-value=1.8e-06  Score=72.07  Aligned_cols=77  Identities=25%  Similarity=0.350  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      .+|||+|||+ |.+|++++..|...|+  +|.++|++++                           ++++||+||++.. 
T Consensus        18 ~~~~I~iiG~-G~mG~~la~~l~~~g~--~V~~~~~~~~---------------------------~~~~aD~vi~av~-   66 (209)
T 2raf_A           18 QGMEITIFGK-GNMGQAIGHNFEIAGH--EVTYYGSKDQ---------------------------ATTLGEIVIMAVP-   66 (209)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECTTCC---------------------------CSSCCSEEEECSC-
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCHH---------------------------HhccCCEEEEcCC-
Confidence            3579999997 9999999999999887  8999998653                           3578999999862 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                         +            ..++++++.+.++.++.+++.++|+.+
T Consensus        67 ---~------------~~~~~v~~~l~~~~~~~~vi~~~~g~~   94 (209)
T 2raf_A           67 ---Y------------PALAALAKQYATQLKGKIVVDITNPLN   94 (209)
T ss_dssp             ---H------------HHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred             ---c------------HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence               1            112344445544333778888999665

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=98.44  E-value=6.1e-07  Score=80.25  Aligned_cols=112  Identities=16%  Similarity=0.100  Sum_probs=75.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCCh-----------hHHHHHhcCCCCCeEEEEeC----CC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTP-----------GVTADISHMDTGAVVRGFLG----QP   80 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~--~~~~~ei~L~D~~~~~-----------g~~~dl~~~~~~~~v~~~~~----~~   80 (258)
                      .++|+|.|+||+|++|++++..|+.  .|.  +|+++|+....           .....+..    ..+..+.+    ..
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Dl~d~~   81 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKA--KVVVLDKFRSNTLFSNNRPSSLGHFKNLIG----FKGEVIAADINNPL   81 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTS--EEEEEECCCCC-------CCCCCCGGGGTT----CCSEEEECCTTCHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCC--eEEEEECCCccccccccchhhhhhhhhccc----cCceEEECCCCCHH
Confidence            4567999999999999999999998  787  99999986531           01111111    11121111    11


Q ss_pred             chHhh-hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           81 QLENA-LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        81 d~~~a-~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++.++ ..++|+||.+||..........+.+..|+.....+++.+.+.+..  ||.+|
T Consensus        82 ~~~~~~~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~--~V~~S  137 (362)
T 3sxp_A           82 DLRRLEKLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK--VIYAS  137 (362)
T ss_dssp             HHHHHTTSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE--EEEEE
T ss_pred             HHHHhhccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc--EEEeC
Confidence            34445 689999999998644333445677889999999999999887654  44444

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=98.44  E-value=1.2e-07  Score=85.08  Aligned_cols=115  Identities=17%  Similarity=0.148  Sum_probs=75.0

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C---CchHhhhCC
Q 025075           15 KGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENALTG   88 (258)
Q Consensus        15 ~~~~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~---~d~~~a~~~   88 (258)
                      ...+++|||.|+||+|++|++++..|... |.  +|+.+|++.....  ++...   ..+..+.+  +   .++.+++++
T Consensus        19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~~---~~v~~~~~Dl~~d~~~~~~~~~~   91 (372)
T 3slg_A           19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDW--EVFGMDMQTDRLG--DLVKH---ERMHFFEGDITINKEWVEYHVKK   91 (372)
T ss_dssp             ----CCCEEEEESCSSHHHHHHHHHHHHHSSC--EEEEEESCCTTTG--GGGGS---TTEEEEECCTTTCHHHHHHHHHH
T ss_pred             CcccCCCEEEEECCCChHHHHHHHHHHhCCCC--EEEEEeCChhhhh--hhccC---CCeEEEeCccCCCHHHHHHHhcc
Confidence            34566789999999999999999998887 76  8999998764211  11111   12222211  1   234567889


Q ss_pred             CCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|+||.+|+......  .+..+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        92 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~--~~~v~~SS  141 (372)
T 3slg_A           92 CDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG--KHLVFPST  141 (372)
T ss_dssp             CSEEEECBCCCCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT--CEEEEECC
T ss_pred             CCEEEEcCccccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC--CcEEEeCc
Confidence            999999997543211  1234566778888888999998887  45555553

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=98.43  E-value=2.3e-07  Score=81.57  Aligned_cols=167  Identities=16%  Similarity=0.125  Sum_probs=93.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhC--CCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~--~aDiVI   93 (258)
                      ||||.|+||+|++|++++..|...|.  +|+++|++..... ..+..     .+..+.+    ..++.++++  ++|+||
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~d~vi   72 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGL--SVVVVDNLQTGHE-DAITE-----GAKFYNGDLRDKAFLRDVFTQENIEAVM   72 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCT-----TSEEEECCTTCHHHHHHHHHHSCEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCCCcCch-hhcCC-----CcEEEECCCCCHHHHHHHHhhcCCCEEE
Confidence            57999999999999999999999886  8999998653211 11111     1111111    113445677  899999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHH
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVV  171 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~  171 (258)
                      ++|+.....  ..+..+.+..|+.....+++.+.+.+.. .+|.+|.. .+...--...+......++....+.+.....
T Consensus        73 h~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~-~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  150 (330)
T 2c20_A           73 HFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTA-ATYGEVDVDLITEETMTNPTNTYGETKLAIE  150 (330)
T ss_dssp             ECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCG-GGGCSCSSSSBCTTSCCCCSSHHHHHHHHHH
T ss_pred             ECCcccCccccccCHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCc-eeeCCCCCCCCCcCCCCCCCChHHHHHHHHH
Confidence            999854211  0123456778999999999998876543 45545431 1000000000000001112223333444444


Q ss_pred             HHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          172 RANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       172 R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ++...+++..+++..-++ +.++|.+
T Consensus       151 ~~~~~~~~~~~~~~~ilrp~~v~G~~  176 (330)
T 2c20_A          151 KMLHWYSQASNLRYKIFRYFNVAGAT  176 (330)
T ss_dssp             HHHHHHHHTSSCEEEEEECSEEECCC
T ss_pred             HHHHHHHHHhCCcEEEEecCcccCCC
Confidence            555555666677666666 4678764

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.43  E-value=4.8e-07  Score=88.88  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=68.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HH----HhcCC-CC--------CeEEEEeC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----AD----ISHMD-TG--------AVVRGFLG   78 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~d----l~~~~-~~--------~~v~~~~~   78 (258)
                      +.+.+||+|||+ |.+|+.++..|+..|+  +|++||++++....     .+    +.... ..        ..+..   
T Consensus       311 ~~~i~kV~VIGa-G~MG~~iA~~la~aG~--~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---  384 (715)
T 1wdk_A          311 AKDVKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---  384 (715)
T ss_dssp             CCCCSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---
T ss_pred             cccCCEEEEECC-ChhhHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEE---
Confidence            445679999998 9999999999999998  89999998742111     00    11111 00        12332   


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCC
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVN  141 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd  141 (258)
                      ++|+ +++++||+||.+..              .+..+.+++...+.++++ ++++  +||.+.
T Consensus       385 ~~d~-~~~~~aDlVIeaV~--------------e~~~vk~~v~~~l~~~~~~~~Il--asntSt  431 (715)
T 1wdk_A          385 TLSY-GDFGNVDLVVEAVV--------------ENPKVKQAVLAEVENHVREDAIL--ASNTST  431 (715)
T ss_dssp             ESSS-TTGGGCSEEEECCC--------------SCHHHHHHHHHHHHTTSCTTCEE--EECCSS
T ss_pred             ECCH-HHHCCCCEEEEcCC--------------CCHHHHHHHHHHHHhhCCCCeEE--EeCCCC
Confidence            3466 68999999999962              235556777778888774 5544  666554

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=98.42  E-value=8.6e-07  Score=79.98  Aligned_cols=169  Identities=15%  Similarity=0.073  Sum_probs=97.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVI   93 (258)
                      .+||||.|+||+|++|++++..|...|.  +|+++|++......  +...    .+..+.+    ..++.++++++|+||
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~v~~~~~Dl~d~~~~~~~~~~~d~Vi   98 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMT--EDMF----CDEFHLVDLRVMENCLKVTEGVDHVF   98 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSC--GGGT----CSEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCC--eEEEEECCCccchh--hccC----CceEEECCCCCHHHHHHHhCCCCEEE
Confidence            3567999999999999999999998886  89999987642111  1111    1111111    123567789999999


Q ss_pred             EcCCCCCCC---CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH-----HHHHHhC--CCCCCcEE
Q 025075           94 IPAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA-----EVFKKAG--TYDPKKLL  163 (258)
Q Consensus        94 i~ag~~~~~---g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t-----~~~~~~~--~~~~~kvi  163 (258)
                      ++|+.....   .....+.+..|+.....+++.+.+.+.. .+|.+|.. .+...--.     ..+....  ..++....
T Consensus        99 h~A~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~-~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y  176 (379)
T 2c5a_A           99 NLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSA-CIYPEFKQLETTNVSLKESDAWPAEPQDAF  176 (379)
T ss_dssp             ECCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEG-GGSCGGGSSSSSSCEECGGGGSSBCCSSHH
T ss_pred             ECceecCcccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeeh-heeCCCCCCCccCCCcCcccCCCCCCCChh
Confidence            999864321   2334567788999999999999876544 44444321 10000000     0000000  01122233


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.+.....++...+++..+++..-++ +.++|..
T Consensus       177 ~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~  210 (379)
T 2c5a_A          177 GLEKLATEELCKHYNKDFGIECRIGRFHNIYGPF  210 (379)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcC
Confidence            33433444454555666677766666 4578865

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.40  E-value=2.3e-07  Score=78.09  Aligned_cols=97  Identities=16%  Similarity=0.120  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L-~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      .++||||+|||+ |.+|.+++..|...|+  +|.+ +|+++++...+.-... .  ...    .++ .++++++|+||++
T Consensus        20 ~m~mmkI~IIG~-G~mG~~la~~l~~~g~--~V~~v~~r~~~~~~~l~~~~g-~--~~~----~~~-~~~~~~aDvVila   88 (220)
T 4huj_A           20 FQSMTTYAIIGA-GAIGSALAERFTAAQI--PAIIANSRGPASLSSVTDRFG-A--SVK----AVE-LKDALQADVVILA   88 (220)
T ss_dssp             GGGSCCEEEEEC-HHHHHHHHHHHHHTTC--CEEEECTTCGGGGHHHHHHHT-T--TEE----ECC-HHHHTTSSEEEEE
T ss_pred             hhcCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCCHHHHHHHHHHhC-C--Ccc----cCh-HHHHhcCCEEEEe
Confidence            345689999997 9999999999998887  7888 9998764332211111 1  111    122 4678999999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..    +.            .+.++++.+.. .++.+++.++||..
T Consensus        89 vp----~~------------~~~~v~~~l~~-~~~~ivi~~~~g~~  117 (220)
T 4huj_A           89 VP----YD------------SIADIVTQVSD-WGGQIVVDASNAID  117 (220)
T ss_dssp             SC----GG------------GHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred             CC----hH------------HHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence            62    11            13455556655 45678888999984

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=98.40  E-value=2.3e-06  Score=75.83  Aligned_cols=114  Identities=14%  Similarity=0.047  Sum_probs=73.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++|||.|+||+|++|++++..|...|.  +|+++|++..... ..+.+......+..+.+. -...++.++|+||.+|+
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~~~~~~~~~~~~~~~~D-~~~~~~~~~d~vih~A~  100 (343)
T 2b69_A           25 KDRKRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRK-RNVEHWIGHENFELINHD-VVEPLYIEVDQIYHLAS  100 (343)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGTGGGTTCTTEEEEECC-TTSCCCCCCSEEEECCS
T ss_pred             cCCCEEEEEcCccHHHHHHHHHHHHCCC--EEEEEeCCCccch-hhhhhhccCCceEEEeCc-cCChhhcCCCEEEECcc
Confidence            4467999999999999999999998886  8999998643110 011111111123333221 11245789999999998


Q ss_pred             CCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        98 ~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus       101 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  140 (343)
T 2b69_A          101 PASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLAS  140 (343)
T ss_dssp             CCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC--cEEEEC
Confidence            54211  123345678899999999999988764  555554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=98.40  E-value=6e-07  Score=74.61  Aligned_cols=101  Identities=19%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C---CchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~---~d~~~a~~~aDiVIi~   95 (258)
                      |||.|+||+|++|+.++..|...|.  +|++++++......  +      ..+..+.+  +   .++.++++++|+||.+
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~--~------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~   70 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDY--QIYAGARKVEQVPQ--Y------NNVKAVHFDVDWTPEEMAKQLHGMDAIINV   70 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSC--EEEEEESSGGGSCC--C------TTEEEEECCTTSCHHHHHTTTTTCSEEEEC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCccchhh--c------CCceEEEecccCCHHHHHHHHcCCCEEEEC
Confidence            5999999999999999999999886  99999987642111  1      11221111  1   2456778999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|....      +.+..|+.....+++.+++.+.. .+|.+|.
T Consensus        71 ag~~~~------~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS  106 (219)
T 3dqp_A           71 SGSGGK------SLLKVDLYGAVKLMQAAEKAEVK-RFILLST  106 (219)
T ss_dssp             CCCTTS------SCCCCCCHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             CcCCCC------CcEeEeHHHHHHHHHHHHHhCCC-EEEEECc
Confidence            986542      13455677777788888776543 4555554

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.40  E-value=2e-06  Score=76.37  Aligned_cols=98  Identities=15%  Similarity=0.172  Sum_probs=66.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +++|||+|||+ |.+|..++..|...|..  .+|.+||++++  +...  +...    .+..   +.+..++++++|+||
T Consensus        20 ~~~mkI~iIG~-G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~--l~~~----G~~~---~~~~~e~~~~aDvVi   89 (322)
T 2izz_A           20 FQSMSVGFIGA-GQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSA--LRKM----GVKL---TPHNKETVQHSDVLF   89 (322)
T ss_dssp             --CCCEEEESC-SHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHH--HHHH----TCEE---ESCHHHHHHHCSEEE
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHH--HHHc----CCEE---eCChHHHhccCCEEE
Confidence            33579999998 99999999999988831  37999999864  2222  2221    1221   235567889999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      ++..    +.            .+.++++.+.... |+.+|+.++|.+.
T Consensus        90 lav~----~~------------~~~~vl~~l~~~l~~~~ivvs~s~gi~  122 (322)
T 2izz_A           90 LAVK----PH------------IIPFILDEIGADIEDRHIVVSCAAGVT  122 (322)
T ss_dssp             ECSC----GG------------GHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred             EEeC----HH------------HHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence            9972    21            1345555666553 6778888889876

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=98.39  E-value=1.3e-06  Score=77.16  Aligned_cols=113  Identities=20%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEeC----CCchHhhhCC--CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aD   90 (258)
                      ||||.|+||+|++|++++..|...|.  +|+++|++..   .....++....   .+..+.+    ..++.+++++  +|
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~---~~~~~~~Dl~d~~~~~~~~~~~~~d   75 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSLG---NFEFVHGDIRNKNDVTRLITKYMPD   75 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTTC---CCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCC--EEEEEeCCCccCchhhhhhhccCC---ceEEEEcCCCCHHHHHHHHhccCCC
Confidence            46999999999999999999999887  8999997531   11122333211   1222211    1234566777  99


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +||.+|+.....  ..+..+.+..|+.....+++.+.+....+.+|.+|
T Consensus        76 ~vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~S  124 (347)
T 1orr_A           76 SCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  124 (347)
T ss_dssp             EEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EEEECCcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec
Confidence            999999854210  01234567889999999999999887655666555

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.39  E-value=1.5e-06  Score=77.72  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=68.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCC-----hhHHHHHhcCC--------CCCeEEEEe
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFL   77 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~-------~~~ei~L~D~~~~-----~g~~~dl~~~~--------~~~~v~~~~   77 (258)
                      +.+|||+|||+ |.+|.+++..|...|       +  +|.+||++++     ....+.-.+..        ....+..  
T Consensus         6 m~~mkI~iIG~-G~mG~~~a~~l~~~g~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--   80 (354)
T 1x0v_A            6 MASKKVCIVGS-GNWGSAIAKIVGGNAAQLAQFDP--RVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA--   80 (354)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTEEE--EEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHHhcCCcccCCCC--eEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence            44579999998 999999999998876       4  8999999875     43333211110        0112322  


Q ss_pred             CCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        78 ~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                       ++|+.+++++||+||++..    + .           .+.++++.+..+. |+.+++.++|..+
T Consensus        81 -~~~~~~~~~~aD~Vilav~----~-~-----------~~~~v~~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           81 -VPDVVQAAEDADILIFVVP----H-Q-----------FIGKICDQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             -ESSHHHHHTTCSEEEECCC----G-G-----------GHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred             -EcCHHHHHcCCCEEEEeCC----H-H-----------HHHHHHHHHHhhCCCCCEEEEECCccC
Confidence             3567778999999999962    1 1           1355666776654 6788888888554

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=98.39  E-value=2e-06  Score=75.57  Aligned_cols=117  Identities=14%  Similarity=0.007  Sum_probs=76.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-HH-HhcCCCCCeEEEE-----eCCCchHhhhCCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-AD-ISHMDTGAVVRGF-----LGQPQLENALTGMD   90 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-~d-l~~~~~~~~v~~~-----~~~~d~~~a~~~aD   90 (258)
                      .+.++|.|+||+|++|++++..|...|.  +|++++++...... .+ +.... ...+..+     ....++.++++++|
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d   85 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAA   85 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCC
Confidence            3456999999999999999999999887  89999986542211 11 11000 0122222     11234556778999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +||++|+.... +.+..+.+..|+.....+++.+.+......+|.+|.
T Consensus        86 ~vih~A~~~~~-~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           86 GVAHIASVVSF-SNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             EEEECCCCCSC-CSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             EEEEeCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            99999986532 234456778899999999998875332345665553

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.39  E-value=3.4e-06  Score=78.40  Aligned_cols=120  Identities=14%  Similarity=0.137  Sum_probs=77.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC----------------CCeEEEEeCCCchH
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLE   83 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~~~d~~   83 (258)
                      ..+|+|||+ |.||..+|..|+..|+  +|++||+++++-..  +.....                ...+.   .++|+.
T Consensus         8 ~~~~~vIGl-G~vG~~~A~~La~~G~--~V~~~D~~~~kv~~--l~~g~~~~~epgl~~~~~~~~~~g~l~---~ttd~~   79 (446)
T 4a7p_A            8 SVRIAMIGT-GYVGLVSGACFSDFGH--EVVCVDKDARKIEL--LHQNVMPIYEPGLDALVASNVKAGRLS---FTTDLA   79 (446)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHH--HTTTCCSSCCTTHHHHHHHHHHTTCEE---EESCHH
T ss_pred             ceEEEEEcC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HhcCCCCccCCCHHHHHHhhcccCCEE---EECCHH
Confidence            358999998 9999999999999998  99999999863222  222110                11233   356888


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCCCcHHHHHHHHHH
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd~~~~i~t~~~~~  153 (258)
                      +++++||+||++.+.|...+...     -++..+++.++.+.++- |+.+++.- |-|..+.- -+.+.+.+
T Consensus        80 ea~~~aDvvii~Vptp~~~~~~~-----~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~-~l~~~l~e  145 (446)
T 4a7p_A           80 EGVKDADAVFIAVGTPSRRGDGH-----ADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGD-EVERIIAE  145 (446)
T ss_dssp             HHHTTCSEEEECCCCCBCTTTCC-----BCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHH-HHHHHHHH
T ss_pred             HHHhcCCEEEEEcCCCCccccCC-----ccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHH-HHHHHHHH
Confidence            89999999999988775431111     23445666667777665 45555554 34555322 33444443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.35  E-value=2e-06  Score=76.20  Aligned_cols=121  Identities=12%  Similarity=0.133  Sum_probs=73.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH----HhcCCCCCeEEE--EeCCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTGAVVRG--FLGQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d----l~~~~~~~~v~~--~~~~~d~~~a~~~aDiVI   93 (258)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++. ....+    +..... .....  +..+.+++++.+++|+||
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~~-~~i~~~Gl~~~~~~~-g~~~~~~~~~~~~~~~~~~~~DlVi   76 (320)
T 3i83_A            2 SLNILVIGT-GAIGSFYGALLAKTGH--CVSVVSRSDY-ETVKAKGIRIRSATL-GDYTFRPAAVVRSAAELETKPDCTL   76 (320)
T ss_dssp             -CEEEEESC-CHHHHHHHHHHHHTTC--EEEEECSTTH-HHHHHHCEEEEETTT-CCEEECCSCEESCGGGCSSCCSEEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCChH-HHHHhCCcEEeecCC-CcEEEeeeeeECCHHHcCCCCCEEE
Confidence            479999998 9999999999999887  9999998752 11111    111001 11110  111245555555999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE-Eeec
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG-VTML  168 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG-~t~l  168 (258)
                      ++.    |+...            .++++.+..+ .|+..|+.+.|.++..-     .+.+.  +|.+++++ ++..
T Consensus        77 lav----K~~~~------------~~~l~~l~~~l~~~t~Iv~~~nGi~~~~-----~l~~~--~~~~~vl~g~~~~  130 (320)
T 3i83_A           77 LCI----KVVEG------------ADRVGLLRDAVAPDTGIVLISNGIDIEP-----EVAAA--FPDNEVISGLAFI  130 (320)
T ss_dssp             ECC----CCCTT------------CCHHHHHTTSCCTTCEEEEECSSSSCSH-----HHHHH--STTSCEEEEEEEE
T ss_pred             Eec----CCCCh------------HHHHHHHHhhcCCCCEEEEeCCCCChHH-----HHHHH--CCCCcEEEEEEEe
Confidence            996    22221            2244455554 46788888999987432     22332  66778774 4443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=98.35  E-value=8.2e-07  Score=74.64  Aligned_cols=115  Identities=19%  Similarity=0.148  Sum_probs=74.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +.++|.|+||+|++|++++..|+..|...+|+++|+++............   .+. ++....++.++++++|+||.++|
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~---~~~~D~~d~~~~~~~~~~~d~vi~~ag   93 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN---QEVVDFEKLDDYASAFQGHDVGFCCLG   93 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE---EEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCce---EEecCcCCHHHHHHHhcCCCEEEECCC
Confidence            34689999999999999999999888655899999876421111011100   010 11112345677889999999998


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .... .....+++..|+.....+++.+.+.... .++++|.
T Consensus        94 ~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS  132 (242)
T 2bka_A           94 TTRG-KAGAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSS  132 (242)
T ss_dssp             CCHH-HHHHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             cccc-cCCcccceeeeHHHHHHHHHHHHHCCCC-EEEEEcc
Confidence            5321 1123456677888888888888776543 4555543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.35  E-value=9.2e-07  Score=75.53  Aligned_cols=101  Identities=16%  Similarity=0.162  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--H----------HHHHhcCCCCCeEEEEeCCCchHh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--V----------TADISHMDTGAVVRGFLGQPQLEN   84 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~----------~~dl~~~~~~~~v~~~~~~~d~~~   84 (258)
                      ....+||+|||+ |.+|.+++..|...|+  +|.+||+++++.  .          ..++.... . ...    ..++.+
T Consensus        16 ~~~~~kIgiIG~-G~mG~alA~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~----~~~~~e   86 (245)
T 3dtt_A           16 YFQGMKIAVLGT-GTVGRTMAGALADLGH--EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEH-P-HVH----LAAFAD   86 (245)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHTCC-------CCHHHHGGGS-T-TCE----EEEHHH
T ss_pred             ccCCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhc-C-cee----ccCHHH
Confidence            445579999998 9999999999999887  999999976430  0          12222211 1 111    135578


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ++++||+||++..    +..        -.+.+.++.   ...-|+.+++.++||.+
T Consensus        87 ~~~~aDvVilavp----~~~--------~~~~~~~i~---~~~l~g~ivi~~s~~~~  128 (245)
T 3dtt_A           87 VAAGAELVVNATE----GAS--------SIAALTAAG---AENLAGKILVDIANPLD  128 (245)
T ss_dssp             HHHHCSEEEECSC----GGG--------HHHHHHHHC---HHHHTTSEEEECCCCEE
T ss_pred             HHhcCCEEEEccC----cHH--------HHHHHHHhh---hhhcCCCEEEECCCCCC
Confidence            8999999999862    111        112233331   22227789999999873

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.35  E-value=2.6e-06  Score=77.13  Aligned_cols=101  Identities=13%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-------CCcEEEEEeCCCC-----hhHHHHHhcCC--------CCCeEEEEeC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-------LVSVLHLYDVVNT-----PGVTADISHMD--------TGAVVRGFLG   78 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-------~~~ei~L~D~~~~-----~g~~~dl~~~~--------~~~~v~~~~~   78 (258)
                      +||||+|||+ |.+|++++..|...|       .  +|.+||++++     ....+.-.+..        .+..+..   
T Consensus        20 ~~~kI~iIGa-G~mG~alA~~L~~~G~~~~~~~~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~---   93 (375)
T 1yj8_A           20 GPLKISILGS-GNWASAISKVVGTNAKNNYLFEN--EVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA---   93 (375)
T ss_dssp             SCBCEEEECC-SHHHHHHHHHHHHHHHHCTTBCS--CEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE---
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHcCCccCCCCC--eEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE---
Confidence            3579999998 999999999998776       5  8999999875     33322111110        1112332   


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh----hC-CCcEEEEecCCCC
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK----CC-PNATVNLISNPVN  141 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~----~~-p~a~viv~tNPvd  141 (258)
                      ++|+.+++++||+||++..                ...+.++++.+..    +. |+.+++.++|.++
T Consensus        94 ~~~~~ea~~~aDvVilav~----------------~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~  145 (375)
T 1yj8_A           94 HSDLASVINDADLLIFIVP----------------CQYLESVLASIKESESIKIASHAKAISLTKGFI  145 (375)
T ss_dssp             ESSTHHHHTTCSEEEECCC----------------HHHHHHHHHHHTC---CCCCTTCEEEECCCSCE
T ss_pred             ECCHHHHHcCCCEEEEcCC----------------HHHHHHHHHHHhhhhhccCCCCCEEEEeCCccc
Confidence            3466788999999999862                1235667777776    43 6788888888654

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=98.34  E-value=4.9e-06  Score=73.41  Aligned_cols=117  Identities=13%  Similarity=0.050  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCC-CCeEEEEe----CCCchHhhhCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDT-GAVVRGFL----GQPQLENALTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~-~~~v~~~~----~~~d~~~a~~~aDiVI   93 (258)
                      +++|.|+||+|++|++++..|+..|.  +|+..+++.... ...++..... ...+..+.    ...++.++++++|+||
T Consensus         5 ~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   82 (337)
T 2c29_D            5 SETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVF   82 (337)
T ss_dssp             -CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEE
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEE
Confidence            46899999999999999999999887  888888765421 1112211100 01122211    1234667899999999


Q ss_pred             EcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           94 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        94 i~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ++|+.......+ ..+++..|+.-...+++.+.+...-..||.+|.
T Consensus        83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS  128 (337)
T 2c29_D           83 HVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSS  128 (337)
T ss_dssp             ECCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EeccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeee
Confidence            998754211122 234678899999999998888763345555543

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=98.34  E-value=1.1e-06  Score=71.73  Aligned_cols=103  Identities=15%  Similarity=0.132  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi~a   96 (258)
                      |||.|+||+|++|++++..|...|.  +|+++++++....  ++..    ..+..+.+    ..++.++++++|+||.++
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~--~V~~~~r~~~~~~--~~~~----~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLP--SEGP----RPAHVVVGDVLQAADVDKTVAGQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSC--SSSC----CCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC--eEEEEEeChhhcc--cccC----CceEEEEecCCCHHHHHHHHcCCCEEEECc
Confidence            6999999999999999999999886  9999998753211  0101    11221111    124567789999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      |.......     ...|+.....+++.+.+...+ .++.+|
T Consensus        76 ~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~-~~v~~S  110 (206)
T 1hdo_A           76 GTRNDLSP-----TTVMSEGARNIVAAMKAHGVD-KVVACT  110 (206)
T ss_dssp             CCTTCCSC-----CCHHHHHHHHHHHHHHHHTCC-EEEEEC
T ss_pred             cCCCCCCc-----cchHHHHHHHHHHHHHHhCCC-eEEEEe
Confidence            86432111     135777788888888877544 444444

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=98.33  E-value=3e-06  Score=79.93  Aligned_cols=106  Identities=17%  Similarity=0.125  Sum_probs=71.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .++|||.|+||+|++|++++..|...|.  +|+.++++......           +. ......+.++++++|+||.+|+
T Consensus       145 ~k~m~VLVTGatG~IG~~l~~~L~~~G~--~V~~l~R~~~~~~~-----------v~-~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          145 GSPLTVAITGSRGLVGRALTAQLQTGGH--EVIQLVRKEPKPGK-----------RF-WDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSSCCTTC-----------EE-CCTTSCCTTTTTTCSEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCCccc-----------ee-ecccchhHHhcCCCCEEEECCC
Confidence            3378999999999999999999999987  99999987642110           10 0011123467899999999998


Q ss_pred             CCCCC---CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           98 VPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        98 ~~~~~---g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .....   .....+++..|+.....+++.+.+...-..+|.+|
T Consensus       211 ~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~S  253 (516)
T 3oh8_A          211 EPIFGRFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISAS  253 (516)
T ss_dssp             C-----CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEE
T ss_pred             CccccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeC
Confidence            64221   12345567789999999999854443323455444

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=98.33  E-value=2.4e-06  Score=76.06  Aligned_cols=172  Identities=13%  Similarity=0.067  Sum_probs=95.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeC--C--CchHhhhCC--CCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLG--Q--PQLENALTG--MDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~~--aDiV   92 (258)
                      .|+|.|+||+|++|++++..|...|.  +|+++|++.... ...+.....  ..+..+.+  +  .++.+++++  .|+|
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~d~v   84 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVA--DGMQSEIGDIRDQNKLLESIREFQPEIV   84 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC--eEEEEeCCCcccchhhHhhccC--CceEEEEccccCHHHHHHHHHhcCCCEE
Confidence            46999999999999999999999887  899999876421 111111101  11221111  1  134455665  8999


Q ss_pred             EEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHH-HHHHHHhCCCCCCcEEEEeecc
Q 025075           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA-AEVFKKAGTYDPKKLLGVTMLD  169 (258)
Q Consensus        93 Ii~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~-t~~~~~~~~~~~~kviG~t~ld  169 (258)
                      |++|+.+...  .....+.+..|+.....+++.+.+.+....+|.+|...- ...-- ..........++...+|.+...
T Consensus        85 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v-yg~~~~~~~~~E~~~~~~~~~Y~~sK~~  163 (357)
T 1rkx_A           85 FHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKC-YDNKEWIWGYRENEAMGGYDPYSNSKGC  163 (357)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGG-BCCCCSSSCBCTTSCBCCSSHHHHHHHH
T ss_pred             EECCCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHH-hCCCCcCCCCCCCCCCCCCCccHHHHHH
Confidence            9999853211  112345677898888999998888753345555553110 00000 0000000012223333334444


Q ss_pred             HHHHHHHHHHHh---------CCCCCcee-EEEEecC
Q 025075          170 VVRANTFVAEVL---------GLDPRDVD-VPVVGGH  196 (258)
Q Consensus       170 s~R~~~~la~~l---------~v~~~~v~-~~v~G~h  196 (258)
                      ..++-..+++.+         +++..-++ +.++|..
T Consensus       164 ~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~  200 (357)
T 1rkx_A          164 AELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGG  200 (357)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTT
T ss_pred             HHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCC
Confidence            445555555554         77666677 5688864

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=98.33  E-value=5.6e-07  Score=78.78  Aligned_cols=165  Identities=13%  Similarity=0.099  Sum_probs=95.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCC--CCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~--aDiV   92 (258)
                      ++++|.|+||+|++|++++..|...|.  +|+++|++... ..  +       .+..+.+    ..++.+++++  .|+|
T Consensus        11 ~~~~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~-~~--l-------~~~~~~~Dl~d~~~~~~~~~~~~~d~v   78 (321)
T 2pk3_A           11 GSMRALITGVAGFVGKYLANHLTEQNV--EVFGTSRNNEA-KL--P-------NVEMISLDIMDSQRVKKVISDIKPDYI   78 (321)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCTTC-CC--T-------TEEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             CcceEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcc-cc--c-------eeeEEECCCCCHHHHHHHHHhcCCCEE
Confidence            456899999999999999999999887  89999987642 10  1       1111111    1234456665  8999


Q ss_pred             EEcCCCCCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHH--HHHHHHHhCCCCCCcEEEEeec
Q 025075           93 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI--AAEVFKKAGTYDPKKLLGVTML  168 (258)
Q Consensus        93 Ii~ag~~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i--~t~~~~~~~~~~~~kviG~t~l  168 (258)
                      |.+|+....  ...+..+.+..|+.....+++.+.+......+|.+|...-. ...  -...+......++...+|.+..
T Consensus        79 ih~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~-g~~~~~~~~~~E~~~~~~~~~Y~~sK~  157 (321)
T 2pk3_A           79 FHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEY-GMILPEESPVSEENQLRPMSPYGVSKA  157 (321)
T ss_dssp             EECCSCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGT-BSCCGGGCSBCTTSCCBCCSHHHHHHH
T ss_pred             EEcCcccchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhc-CCCCCCCCCCCCCCCCCCCCccHHHHH
Confidence            999986431  11234557788999999999999766434555555432100 000  0000000001222333333444


Q ss_pred             cHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          169 DVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       169 ds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ...++-..+++..|++..-++ +.++|..
T Consensus       158 ~~E~~~~~~~~~~gi~~~ilrp~~v~g~~  186 (321)
T 2pk3_A          158 SVGMLARQYVKAYGMDIIHTRTFNHIGPG  186 (321)
T ss_dssp             HHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeCcccCcC
Confidence            444555555666677766666 4688865

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.32  E-value=1.3e-06  Score=81.62  Aligned_cols=114  Identities=18%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCC---------------CCeEEEEeCCCch
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDT---------------GAVVRGFLGQPQL   82 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~---------------~~~v~~~~~~~d~   82 (258)
                      +|||+|||+ |.||..++..|+..  |+  +|++||+++++...  +.....               ...+.   .++|+
T Consensus         5 ~mkI~VIG~-G~mG~~lA~~La~~g~G~--~V~~~d~~~~~~~~--l~~g~~~i~e~~l~~~~~~~~~~~~~---~t~~~   76 (467)
T 2q3e_A            5 IKKICCIGA-GYVGGPTCSVIAHMCPEI--RVTVVDVNESRINA--WNSPTLPIYEPGLKEVVESCRGKNLF---FSTNI   76 (467)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHCTTS--EEEEECSCHHHHHH--HTSSSCSSCCTTHHHHHHHHBTTTEE---EESCH
T ss_pred             ccEEEEECC-CHHHHHHHHHHHhcCCCC--EEEEEECCHHHHHH--HhCCCCCcCCCCHHHHHHHhhcCCEE---EECCH
Confidence            579999998 99999999999887  55  89999998643222  211100               01232   24577


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCCC
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNS  142 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd~  142 (258)
                      .+++++||+||++.+.|........+ -..++..+.+.++.+.++. |+.+|+.. |+|...
T Consensus        77 ~e~~~~aDvViiaVptp~~~~~v~~~-~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~  137 (467)
T 2q3e_A           77 DDAIKEADLVFISVNTPTKTYGMGKG-RAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRA  137 (467)
T ss_dssp             HHHHHHCSEEEECCCCCBCCSSTTTT-TSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTH
T ss_pred             HHHHhcCCEEEEEcCCchhhcccccc-CCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchH
Confidence            78899999999998765432210000 0123445566677777664 45555544 677764

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=98.31  E-value=2.4e-07  Score=83.21  Aligned_cols=136  Identities=18%  Similarity=0.138  Sum_probs=88.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||.|+||+|++|++++..|...|.. +|+..|++.                     ...++.++++++|+||.+|+...
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~-~v~~~d~~~---------------------d~~~l~~~~~~~d~Vih~a~~~~   58 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDH-HIFEVHRQT---------------------KEEELESALLKADFIVHLAGVNR   58 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC-EEEECCTTC---------------------CHHHHHHHHHHCSEEEECCCSBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCC-EEEEECCCC---------------------CHHHHHHHhccCCEEEECCcCCC
Confidence            69999999999999999999887753 788887740                     01234567889999999998654


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHH
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV  180 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~  180 (258)
                      ..  ...+.+..|+...+.+++.+++.+....++.+|.-.-               ++ ....|.+.....++...+++.
T Consensus        59 ~~--~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~---------------~~-~~~Y~~sK~~~E~~~~~~~~~  120 (369)
T 3st7_A           59 PE--HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQA---------------TQ-DNPYGESKLQGEQLLREYAEE  120 (369)
T ss_dssp             TT--CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGG---------------GS-CSHHHHHHHHHHHHHHHHHHH
T ss_pred             CC--CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhh---------------cC-CCCchHHHHHHHHHHHHHHHH
Confidence            22  2233456688888889999988776545555542110               00 111222223344455555666


Q ss_pred             hCCCCCcee-EEEEecC
Q 025075          181 LGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       181 l~v~~~~v~-~~v~G~h  196 (258)
                      .+++..-++ ..++|.+
T Consensus       121 ~g~~~~i~R~~~v~G~~  137 (369)
T 3st7_A          121 YGNTVYIYRWPNLFGKW  137 (369)
T ss_dssp             HCCCEEEEEECEEECTT
T ss_pred             hCCCEEEEECCceeCCC
Confidence            777766666 4577764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.31  E-value=2.1e-06  Score=74.72  Aligned_cols=98  Identities=12%  Similarity=0.042  Sum_probs=62.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +++|||+|||+ |.+|..++..|...+...+|.++|++++....  +...... . ..   +.+++++++++|+||++..
T Consensus         4 M~~~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~--~~~~g~~-~-~~---~~~~~~~~~~aDvVilavp   75 (290)
T 3b1f_A            4 MEEKTIYIAGL-GLIGASLALGIKRDHPHYKIVGYNRSDRSRDI--ALERGIV-D-EA---TADFKVFAALADVIILAVP   75 (290)
T ss_dssp             GCCCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH--HHHTTSC-S-EE---ESCTTTTGGGCSEEEECSC
T ss_pred             cccceEEEEee-CHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH--HHHcCCc-c-cc---cCCHHHhhcCCCEEEEcCC
Confidence            44689999997 99999999998876432389999987643222  2211111 0 11   2355677899999999962


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  139 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP  139 (258)
                          +            ....++++.+..+  .|+.+++.++|.
T Consensus        76 ----~------------~~~~~v~~~l~~~~l~~~~ivi~~~~~  103 (290)
T 3b1f_A           76 ----I------------KKTIDFIKILADLDLKEDVIITDAGST  103 (290)
T ss_dssp             ----H------------HHHHHHHHHHHTSCCCTTCEEECCCSC
T ss_pred             ----H------------HHHHHHHHHHHhcCCCCCCEEEECCCC
Confidence                1            1125556666665  356676655553

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=98.30  E-value=4.9e-07  Score=81.45  Aligned_cols=170  Identities=14%  Similarity=0.022  Sum_probs=98.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVI   93 (258)
                      ++|||.|+||+|++|++++..|...| .  +|+++|++..... ..+..   ...+..+.+    ..++.++++++|+||
T Consensus        31 ~~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~r~~~~~~-~~l~~---~~~v~~~~~Dl~d~~~l~~~~~~~d~Vi  104 (377)
T 2q1s_A           31 ANTNVMVVGGAGFVGSNLVKRLLELGVN--QVHVVDNLLSAEK-INVPD---HPAVRFSETSITDDALLASLQDEYDYVF  104 (377)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCS--EEEEECCCTTCCG-GGSCC---CTTEEEECSCTTCHHHHHHCCSCCSEEE
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCc--eEEEEECCCCCch-hhccC---CCceEEEECCCCCHHHHHHHhhCCCEEE
Confidence            45799999999999999999999888 6  8999998653211 01110   112322221    113456778999999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHH--HhC---CC-CCCcEEE
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFK--KAG---TY-DPKKLLG  164 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~--~~~---~~-~~~kviG  164 (258)
                      .+|+.....  ..+..+.+..|+.....+++.+.+. ... .+|.+|... +...--...+.  ...   .. ++...++
T Consensus       105 h~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~-vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~  182 (377)
T 2q1s_A          105 HLATYHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGC-SIAEKTFDDAKATEETDIVSLHNNDSPYS  182 (377)
T ss_dssp             ECCCCSCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC---------------CCCCCCCSSCCCSHHH
T ss_pred             ECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHH-HcCCCCCCCcCcccccccccccCCCCchH
Confidence            999854211  0123456778999999999998876 433 444444321 00000000000  110   01 2233334


Q ss_pred             EeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+.....++...+++..+++..-++ +.++|..
T Consensus       183 ~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~  215 (377)
T 2q1s_A          183 MSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPG  215 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence            4444455565666667788877777 5688875

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.30  E-value=2.4e-06  Score=76.90  Aligned_cols=105  Identities=13%  Similarity=0.206  Sum_probs=66.3

Q ss_pred             cCCCCCC-eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC--C------CCCeEEEEeCCCchHhh
Q 025075           15 KGGAAGF-KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D------TGAVVRGFLGQPQLENA   85 (258)
Q Consensus        15 ~~~~~~~-KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~--~------~~~~v~~~~~~~d~~~a   85 (258)
                      ++.+++| ||+|||+ |.+|.+++..|...|+  +|.+||+++++...+.-...  .      .+..+..   ++++.++
T Consensus         9 ~~~~m~M~kI~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~   82 (366)
T 1evy_A            9 KDELLYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF---TSDVEKA   82 (366)
T ss_dssp             CCCCCCEEEEEEECC-SHHHHHHHHHHTTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE---ESCHHHH
T ss_pred             hhHhhccCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccccccccccceee---eCCHHHH
Confidence            4555545 9999998 9999999999998886  89999987643222111110  0      1112332   3467778


Q ss_pred             hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHH----hhhh-CC-CcEEEEecCCCC
Q 025075           86 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEG----IAKC-CP-NATVNLISNPVN  141 (258)
Q Consensus        86 ~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~----i~~~-~p-~a~viv~tNPvd  141 (258)
                      ++++|+||++..    +            ..+.++++.    +..+ .| +.+++.++|.++
T Consensus        83 ~~~aDvVilav~----~------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           83 YNGAEIILFVIP----T------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             HTTCSSEEECCC----H------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             HcCCCEEEECCC----h------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            999999999862    1            112334443    4333 25 677888888654

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=98.29  E-value=2.6e-06  Score=71.54  Aligned_cols=113  Identities=15%  Similarity=0.122  Sum_probs=72.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +++++|.|+||+|++|++++..|...  +.  +|+++++++...  .++.. ... .+. ++....++.++++++|+||+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~--~V~~~~r~~~~~--~~~~~-~~~-~~~~D~~d~~~~~~~~~~~d~vi~   75 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKF--VAKGLVRSAQGK--EKIGG-EAD-VFIGDITDADSINPAFQGIDALVI   75 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTC--EEEEEESCHHHH--HHTTC-CTT-EEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCc--EEEEEEcCCCch--hhcCC-Cee-EEEecCCCHHHHHHHHcCCCEEEE
Confidence            45679999999999999999999988  55  899999865321  12211 111 111 01111245677899999999


Q ss_pred             cCCCCCC------------CCCc---hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           95 PAGVPRK------------PGMT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        95 ~ag~~~~------------~g~~---r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++|....            +...   -.+.+..|+.....+++.+.+.... .+|++|
T Consensus        76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  132 (253)
T 1xq6_A           76 LTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVG  132 (253)
T ss_dssp             CCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             eccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            9986421            1100   0134677888888999988887543 444444

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=98.29  E-value=4.8e-06  Score=72.35  Aligned_cols=98  Identities=18%  Similarity=0.211  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||.|+||+|+||++++..|..+|+  +|+.+.+++..+            .+.  . .....++++++|.||.+++.+-
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~--~V~~l~R~~~~~------------~~~--~-~~~~~~~l~~~d~vihla~~~i   63 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGH--EVTLVSRKPGPG------------RIT--W-DELAASGLPSCDAAVNLAGENI   63 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTT------------EEE--H-HHHHHHCCCSCSEEEECCCCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCcC------------eee--c-chhhHhhccCCCEEEEeccCcc
Confidence            7999999999999999999999998  899998765321            111  0 0111356899999999987432


Q ss_pred             CC-----C-CchhhHHHHhHHHHHHHHHHhhhhCCC-cEEEE
Q 025075          101 KP-----G-MTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNL  135 (258)
Q Consensus       101 ~~-----g-~~r~d~~~~n~~i~~~i~~~i~~~~p~-a~viv  135 (258)
                      ..     . ....++...|+...+.+++.+.+.... .+++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~  105 (298)
T 4b4o_A           64 LNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVL  105 (298)
T ss_dssp             SCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEE
T ss_pred             cchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEE
Confidence            11     1 123456677888888898888876533 34443

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=98.28  E-value=9.2e-07  Score=79.91  Aligned_cols=174  Identities=13%  Similarity=0.095  Sum_probs=95.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh------------------HHHHHhcCCCCCeEEEEeC--
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG------------------VTADISHMDTGAVVRGFLG--   78 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g------------------~~~dl~~~~~~~~v~~~~~--   78 (258)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|+.....                  ...++.... ...+..+.+  
T Consensus        10 ~~~~vlVTG~tGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~~~Dl   86 (404)
T 1i24_A           10 HGSRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALT-GKSIELYVGDI   86 (404)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHH-CCCCEEEESCT
T ss_pred             CCCeEEEeCCCcHHHHHHHHHHHhCCC--eEEEEEecCccccccccccccccccchhhhhhhhHhhcc-CCceEEEECCC
Confidence            457999999999999999999999887  899998753210                  011110000 012222211  


Q ss_pred             C--CchHhhhCC--CCEEEEcCCCCCCC--CCch---hhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHH---H
Q 025075           79 Q--PQLENALTG--MDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP---I  146 (258)
Q Consensus        79 ~--~d~~~a~~~--aDiVIi~ag~~~~~--g~~r---~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~---i  146 (258)
                      +  .++.+++++  +|+||.+||....+  ..+.   ...+..|+.....+++.+.+.+....+|.+|.. .+...   .
T Consensus        87 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~-~vyg~~~~~  165 (404)
T 1i24_A           87 CDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTM-GEYGTPNID  165 (404)
T ss_dssp             TSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCG-GGGCCCSSC
T ss_pred             CCHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcH-HHhCCCCCC
Confidence            1  124456777  99999999864211  0111   135677999999999999887653356655532 10000   0


Q ss_pred             HHHHHH----------HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          147 AAEVFK----------KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       147 ~t~~~~----------~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +++-..          .....++...+|.+.....++...+++.+|++..-++ +.|+|..
T Consensus       166 ~~E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~  226 (404)
T 1i24_A          166 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK  226 (404)
T ss_dssp             BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSC
T ss_pred             CCccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCC
Confidence            000000          0000112222333333334455556666788777777 5688875

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.27  E-value=3.7e-06  Score=74.24  Aligned_cols=68  Identities=13%  Similarity=0.153  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..+||||+|||+ |.+|..++..|...|+  +|.+||+++++...+  ....    +.   ..+++.+++++||+||++.
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l--~~~g----~~---~~~~~~~~~~~aDvvi~~v   85 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGF--KVTVWNRTLSKCDEL--VEHG----AS---VCESPAEVIKKCKYTIAML   85 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGHHH--HHTT----CE---ECSSHHHHHHHCSEEEECC
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH--HHCC----Ce---EcCCHHHHHHhCCEEEEEc
Confidence            445689999998 9999999999999998  999999987643332  2211    11   1356788899999999986

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.26  E-value=1.8e-06  Score=76.93  Aligned_cols=100  Identities=19%  Similarity=0.222  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-C-C---CeEEEEeCCCchHhhhCCCCE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-T-G---AVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-~-~---~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      -..+|||+|||+ |.+|+.++..|...|+  +|.+||+++++...+.-.... + +   ..+..   ++++.+ ++++|+
T Consensus        11 ~~~~~kI~iIG~-G~mG~ala~~L~~~G~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~---~~~~~~-~~~aDv   83 (335)
T 1z82_A           11 HHMEMRFFVLGA-GSWGTVFAQMLHENGE--EVILWARRKEIVDLINVSHTSPYVEESKITVRA---TNDLEE-IKKEDI   83 (335)
T ss_dssp             ---CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEE---ESCGGG-CCTTEE
T ss_pred             cccCCcEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEE---eCCHHH-hcCCCE
Confidence            345679999998 9999999999999887  999999975432222111100 0 0   01222   245566 899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ||++..    + .           .+.++++.+..  ++.++|.++|.++
T Consensus        84 Vil~vk----~-~-----------~~~~v~~~l~~--~~~~vv~~~nGi~  115 (335)
T 1z82_A           84 LVIAIP----V-Q-----------YIREHLLRLPV--KPSMVLNLSKGIE  115 (335)
T ss_dssp             EEECSC----G-G-----------GHHHHHTTCSS--CCSEEEECCCCCC
T ss_pred             EEEECC----H-H-----------HHHHHHHHhCc--CCCEEEEEeCCCC
Confidence            999862    1 1           13444544544  7778888898755

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.26  E-value=4.4e-06  Score=74.14  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=61.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHh-hhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLEN-ALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~-a~~~aDiVIi~ag~   98 (258)
                      .+||+|||+ |.+|.+++..|...|+..+|.+||++++....  +......  ...   ++++++ ++++||+||++.. 
T Consensus        33 ~~kI~IIG~-G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~--a~~~G~~--~~~---~~~~~~~~~~~aDvVilavp-  103 (314)
T 3ggo_A           33 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISK--AVDLGII--DEG---TTSIAKVEDFSPDFVMLSSP-  103 (314)
T ss_dssp             CSEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH--HHHTTSC--SEE---ESCTTGGGGGCCSEEEECSC-
T ss_pred             CCEEEEEee-CHHHHHHHHHHHhCCCCCEEEEEECCHHHHHH--HHHCCCc--chh---cCCHHHHhhccCCEEEEeCC-
Confidence            479999997 99999999999998876689999998642221  1111110  011   245567 8999999999962 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                         +..            +.++++.+..+ .|+++|+.++.
T Consensus       104 ---~~~------------~~~vl~~l~~~l~~~~iv~d~~S  129 (314)
T 3ggo_A          104 ---VRT------------FREIAKKLSYILSEDATVTDQGS  129 (314)
T ss_dssp             ---GGG------------HHHHHHHHHHHSCTTCEEEECCS
T ss_pred             ---HHH------------HHHHHHHHhhccCCCcEEEECCC
Confidence               111            23344455554 36777765543

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=98.26  E-value=2.5e-06  Score=76.21  Aligned_cols=116  Identities=16%  Similarity=0.011  Sum_probs=69.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCC--CCCeEEEEeC----CCchHhhhCC--
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD--TGAVVRGFLG----QPQLENALTG--   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~--~~~~v~~~~~----~~d~~~a~~~--   88 (258)
                      |++|.|+||+|++|++++..|...|.  +|+++|++....   ...++....  ....+..+.+    ..++.+++++  
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   78 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQ   78 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcC
Confidence            46899999999999999999998886  899999865321   111111100  0012222211    1123455654  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCC--cEEEEec
Q 025075           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN--ATVNLIS  137 (258)
Q Consensus        89 aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~--a~viv~t  137 (258)
                      .|+||++||.....  ..+....+..|+.....+++.+.+...+  ..+|.+|
T Consensus        79 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~S  131 (372)
T 1db3_A           79 PDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAS  131 (372)
T ss_dssp             CSEEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            69999999864321  1233445677888888999988877642  5566554

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=98.24  E-value=8.7e-07  Score=77.27  Aligned_cols=157  Identities=18%  Similarity=0.115  Sum_probs=90.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +++||.|+||+|++|++++..|...|.  +|+.+|++...  .....+.+......+.      -...++.++|+||.++
T Consensus         6 ~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~Dl~~~d~vi~~a   77 (321)
T 3vps_A            6 LKHRILITGGAGFIGGHLARALVASGE--EVTVLDDLRVPPMIPPEGTGKFLEKPVLE------LEERDLSDVRLVYHLA   77 (321)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--CEEEECCCSSCCSSCCTTSSEEECSCGGG------CCHHHHTTEEEEEECC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHHCCC--EEEEEecCCcccccchhhhhhhccCCCee------EEeCccccCCEEEECC
Confidence            467999999999999999999999887  89999986531  0000011100000111      1123466999999999


Q ss_pred             CCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC----------CCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           97 GVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN----------PVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        97 g~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN----------Pvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      +.....  .....+.+. |+.....+++.+.+.+.. .+|.+|.          |.+           ......+....|
T Consensus        78 ~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~-----------E~~~~~p~~~Y~  144 (321)
T 3vps_A           78 SHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTP-----------EDSPLSPRSPYA  144 (321)
T ss_dssp             CCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBC-----------TTSCCCCCSHHH
T ss_pred             ccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCC-----------CCCCCCCCChhH
Confidence            754310  112233455 999999999999988744 3444432          111           011122233333


Q ss_pred             EeeccHHHHHHHHHHHhCC-CCCcee-EEEEecC
Q 025075          165 VTMLDVVRANTFVAEVLGL-DPRDVD-VPVVGGH  196 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v-~~~~v~-~~v~G~h  196 (258)
                      .+.....++...+++..++ +..-++ ..++|..
T Consensus       145 ~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~  178 (321)
T 3vps_A          145 ASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPG  178 (321)
T ss_dssp             HHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHHHcCCCceEEEEeccccCcC
Confidence            3444444555555555666 555556 4577765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.24  E-value=2e-06  Score=76.00  Aligned_cols=115  Identities=17%  Similarity=0.205  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-----CCCeEEE--EeCCCchHhhhCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGAVVRG--FLGQPQLENALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-----~~~~v~~--~~~~~d~~~a~~~aDiV   92 (258)
                      +|||+|||+ |.+|..++..|...|.  +|.++|+++ . ..  +....     .......  ...+++. ++++++|+|
T Consensus         2 ~mkI~IiGa-GaiG~~~a~~L~~~g~--~V~~~~r~~-~-~~--i~~~g~~~~~~~g~~~~~~~~~~~~~-~~~~~~D~v   73 (312)
T 3hn2_A            2 SLRIAIVGA-GALGLYYGALLQRSGE--DVHFLLRRD-Y-EA--IAGNGLKVFSINGDFTLPHVKGYRAP-EEIGPMDLV   73 (312)
T ss_dssp             --CEEEECC-STTHHHHHHHHHHTSC--CEEEECSTT-H-HH--HHHTCEEEEETTCCEEESCCCEESCH-HHHCCCSEE
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHCCC--eEEEEEcCc-H-HH--HHhCCCEEEcCCCeEEEeeceeecCH-HHcCCCCEE
Confidence            479999998 9999999999999887  899999875 2 11  21110     0001110  0112454 457899999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |++.    |+..            +.++++.+..+ .|+..|+.+.|-++.    . +.+.+.  +|+++|++-
T Consensus        74 ilav----k~~~------------~~~~l~~l~~~l~~~~~iv~l~nGi~~----~-~~l~~~--~~~~~v~~~  124 (312)
T 3hn2_A           74 LVGL----KTFA------------NSRYEELIRPLVEEGTQILTLQNGLGN----E-EALATL--FGAERIIGG  124 (312)
T ss_dssp             EECC----CGGG------------GGGHHHHHGGGCCTTCEEEECCSSSSH----H-HHHHHH--TCGGGEEEE
T ss_pred             EEec----CCCC------------cHHHHHHHHhhcCCCCEEEEecCCCCc----H-HHHHHH--CCCCcEEEE
Confidence            9986    2222            13455556655 478888889999983    2 223333  677787754

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.23  E-value=1.2e-05  Score=71.16  Aligned_cols=117  Identities=17%  Similarity=0.210  Sum_probs=72.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC---CCCCeEEE-EeCCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM---DTGAVVRG-FLGQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~---~~~~~v~~-~~~~~d~~~a~~~aDiVIi   94 (258)
                      .++||+|||+ |.+|..++..|...|+  +|.+| .+++....+.-...   ........ +..++|+ ++++++|+||+
T Consensus        18 ~~~kI~IiGa-Ga~G~~~a~~L~~~G~--~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil   92 (318)
T 3hwr_A           18 QGMKVAIMGA-GAVGCYYGGMLARAGH--EVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDP-SAVQGADLVLF   92 (318)
T ss_dssp             --CEEEEESC-SHHHHHHHHHHHHTTC--EEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCG-GGGTTCSEEEE
T ss_pred             cCCcEEEECc-CHHHHHHHHHHHHCCC--eEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCH-HHcCCCCEEEE
Confidence            4579999998 9999999999999887  89999 66532221110110   00001110 1113455 45789999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      +.-    +..            +.++++.+..+ .|+.+++.++|.++.    - +.+.+.  +| +++++
T Consensus        93 avk----~~~------------~~~~l~~l~~~l~~~~~iv~~~nGi~~----~-~~l~~~--~~-~~vl~  139 (318)
T 3hwr_A           93 CVK----STD------------TQSAALAMKPALAKSALVLSLQNGVEN----A-DTLRSL--LE-QEVAA  139 (318)
T ss_dssp             CCC----GGG------------HHHHHHHHTTTSCTTCEEEEECSSSSH----H-HHHHHH--CC-SEEEE
T ss_pred             Ecc----ccc------------HHHHHHHHHHhcCCCCEEEEeCCCCCc----H-HHHHHH--cC-CcEEE
Confidence            962    111            35566777765 467888889999983    2 223333  66 77775

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.22  E-value=1.1e-05  Score=69.88  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=61.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~ag~   98 (258)
                      |+||+|||+ |.+|..++..|...|+..+|.++|++++....  +.....  ....   ++|++++++ ++|+||++.. 
T Consensus         1 m~~I~iIG~-G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~--~~~~g~--~~~~---~~~~~~~~~~~aDvVilavp-   71 (281)
T 2g5c_A            1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISK--AVDLGI--IDEG---TTSIAKVEDFSPDFVMLSSP-   71 (281)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH--HHHTTS--CSEE---ESCGGGGGGTCCSEEEECSC-
T ss_pred             CcEEEEEec-CHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHH--HHHCCC--cccc---cCCHHHHhcCCCCEEEEcCC-
Confidence            469999998 99999999999988763479999987643221  111111  1011   235667889 9999999962 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  140 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  140 (258)
                         +.            ...++++.+..+ .|+++++.++|..
T Consensus        72 ---~~------------~~~~v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           72 ---VR------------TFREIAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             ---HH------------HHHHHHHHHHHHSCTTCEEEECCSCC
T ss_pred             ---HH------------HHHHHHHHHHhhCCCCcEEEECCCCc
Confidence               11            122344444443 4677777777643

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=98.22  E-value=3.1e-06  Score=73.90  Aligned_cols=104  Identities=13%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC--CCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVIi~ag   97 (258)
                      .|||.|+||+|++|++++..|...|.  +|+++|++....   .    .....+.   ...++.+++++  +|+||++||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~---~----~~~~Dl~---d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW--HAVGCGFRRARP---K----FEQVNLL---DSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEC----------------------------CHHHHHHHCCSEEEECC-
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC--eEEEEccCCCCC---C----eEEecCC---CHHHHHHHHHhhCCCEEEECCc
Confidence            36899999999999999999999886  899999754321   0    0001111   12234566764  899999998


Q ss_pred             CCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        98 ~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus        70 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  109 (315)
T 2ydy_A           70 ERRPDVVENQPDAASQLNVDASGNLAKEAAAVGA--FLIYIS  109 (315)
T ss_dssp             ------------------CHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ccChhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            64321  123345667788888999998888753  555554

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.22  E-value=1.8e-06  Score=77.06  Aligned_cols=99  Identities=20%  Similarity=0.258  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-----CCeEEE-EeCCCchHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-----GAVVRG-FLGQPQLENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-----~~~v~~-~~~~~d~~~a~~~aDiV   92 (258)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|+++ .  ...+.....     ...... +..++|++ +++++|+|
T Consensus         2 ~~mkI~IiGa-G~~G~~~a~~L~~~g~--~V~~~~r~~-~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V   74 (335)
T 3ghy_A            2 SLTRICIVGA-GAVGGYLGARLALAGE--AINVLARGA-T--LQALQTAGLRLTEDGATHTLPVRATHDAA-ALGEQDVV   74 (335)
T ss_dssp             CCCCEEEESC-CHHHHHHHHHHHHTTC--CEEEECCHH-H--HHHHHHTCEEEEETTEEEEECCEEESCHH-HHCCCSEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEEChH-H--HHHHHHCCCEEecCCCeEEEeeeEECCHH-HcCCCCEE
Confidence            4579999998 9999999999999887  899999852 1  111221110     000000 11234654 47999999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  140 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  140 (258)
                      |++..    +            ..+.++++.+..+ .|+.+|+.++|.+
T Consensus        75 ilavk----~------------~~~~~~~~~l~~~l~~~~~iv~~~nGi  107 (335)
T 3ghy_A           75 IVAVK----A------------PALESVAAGIAPLIGPGTCVVVAMNGV  107 (335)
T ss_dssp             EECCC----H------------HHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred             EEeCC----c------------hhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence            99962    1            1245666777765 4778888899995

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.22  E-value=9.6e-06  Score=70.51  Aligned_cols=93  Identities=18%  Similarity=0.261  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      ||||+|||++|.+|..++..|...|+  +|.++|++++....  +....    +.   . .++.++++++|+||++..  
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~--~V~~~~r~~~~~~~--~~~~g----~~---~-~~~~~~~~~aDvVi~av~--   76 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAH--HLAAIEIAPEGRDR--LQGMG----IP---L-TDGDGWIDEADVVVLALP--   76 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSS--EEEEECCSHHHHHH--HHHTT----CC---C-CCSSGGGGTCSEEEECSC--
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHhcC----CC---c-CCHHHHhcCCCEEEEcCC--
Confidence            47999999669999999999998887  89999987643221  22211    11   1 134578899999999862  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                        +            ..+.++++.+..+. |+.+++..|+..
T Consensus        77 --~------------~~~~~v~~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           77 --D------------NIIEKVAEDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             --H------------HHHHHHHHHHGGGSCTTCEEEESCSHH
T ss_pred             --c------------hHHHHHHHHHHHhCCCCCEEEECCCCc
Confidence              1            11456666776654 567776666543

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=98.22  E-value=1.8e-06  Score=74.57  Aligned_cols=101  Identities=21%  Similarity=0.185  Sum_probs=70.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEE
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVI   93 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVI   93 (258)
                      .+..++||.|+||+|++|++++..|...|.  +|+.+|++.     .|+.+.            .++.++++  ++|+||
T Consensus         8 ~~~~~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~Dl~d~------------~~~~~~~~~~~~d~vi   68 (292)
T 1vl0_A            8 HHHHHMKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVI   68 (292)
T ss_dssp             ----CEEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEE
T ss_pred             cccccceEEEECCCChHHHHHHHHHHhCCC--eEEeccCcc-----CCCCCH------------HHHHHHHHhcCCCEEE
Confidence            455668999999999999999999998886  899998752     222221            23456676  799999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .+||.....  ..+..+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus        69 h~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~S  112 (292)
T 1vl0_A           69 NCAAHTAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA--EIVQIS  112 (292)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             ECCccCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEec
Confidence            999854210  123345678899989999999888764  555554

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=98.21  E-value=3.6e-06  Score=74.30  Aligned_cols=113  Identities=17%  Similarity=0.105  Sum_probs=73.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhC--CCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALT--GMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~--~aD   90 (258)
                      +.+.|+|.|+||+|++|++++..|+..|.  +|+++|++.....  ++....  ..+..+.+    ..++.++++  ++|
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~--~~~~~l--~~v~~~~~Dl~d~~~~~~~~~~~~~D   90 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGH--EILVIDNFATGKR--EVLPPV--AGLSVIEGSVTDAGLLERAFDSFKPT   90 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTC--EEEEEECCSSSCG--GGSCSC--TTEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCccch--hhhhcc--CCceEEEeeCCCHHHHHHHHhhcCCC
Confidence            44457999999999999999999998886  8999998653111  011110  12222211    113456677  999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +||++||..........+ +..|+.....+++.+.+.+.. .+|.+|
T Consensus        91 ~vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  135 (330)
T 2pzm_A           91 HVVHSAAAYKDPDDWAED-AATNVQGSINVAKAASKAGVK-RLLNFQ  135 (330)
T ss_dssp             EEEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCS-EEEEEE
T ss_pred             EEEECCccCCCccccChh-HHHHHHHHHHHHHHHHHcCCC-EEEEec
Confidence            999999865322222233 678888889999988876543 455444

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=98.21  E-value=3.3e-06  Score=76.12  Aligned_cols=172  Identities=16%  Similarity=0.106  Sum_probs=95.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCCh---------hHHH-H-HhcCCC---CCe---EEEEeC-CC-
Q 025075           21 FKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTP---------GVTA-D-ISHMDT---GAV---VRGFLG-QP-   80 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~---------g~~~-d-l~~~~~---~~~---v~~~~~-~~-   80 (258)
                      |+|.|+||+|++|++++..|+ ..|.  +|+++|++...         ...+ + +.....   ...   +..+.+ -. 
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d   80 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRN   80 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCC--EEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCC
Confidence            699999999999999999999 8886  89999986432         1111 1 111100   001   222221 11 


Q ss_pred             --chHhhhC--C-CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHH----HHH-
Q 025075           81 --QLENALT--G-MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP----IAA-  148 (258)
Q Consensus        81 --d~~~a~~--~-aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~----i~t-  148 (258)
                        ++.++++  + +|+||++|+.....  .....+.+..|+.....+++.+.+.... .||.+|. ..+...    ... 
T Consensus        81 ~~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS-~~v~g~~~~~~~~~  158 (397)
T 1gy8_A           81 EDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSS-AAIFGNPTMGSVST  158 (397)
T ss_dssp             HHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEE-GGGTBSCCC-----
T ss_pred             HHHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECC-HHHhCCCCcccccc
Confidence              2345566  6 99999999854211  1123456788999999999998876544 4444432 110000    000 


Q ss_pred             --HHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          149 --EVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       149 --~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                        ..+.......+...++.+.....++-..+++.++++..-++ ..|+|.+
T Consensus       159 ~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~  209 (397)
T 1gy8_A          159 NAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (397)
T ss_dssp             CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             cccCcCccCCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCC
Confidence              00000000111223333444455566666777788777777 4688875

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.21  E-value=4.2e-06  Score=72.31  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+++++...+........ ......  ..+ .++++++|+||++....
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~--~~~-~~~~~~~d~vi~~v~~~   74 (291)
T 1ks9_A            1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT--AND-PDFLATSDLLLVTLKAW   74 (291)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE--ESC-HHHHHTCSEEEECSCGG
T ss_pred             CeEEEECc-CHHHHHHHHHHHhCCC--CEEEEEcCccceeeEEEEcCCCceeeeeee--ecC-ccccCCCCEEEEEecHH
Confidence            58999998 9999999999999887  99999998752211111110000 011111  123 36789999999997321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS  142 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~  142 (258)
                          .            +.++++.+..+ .|+.+++.++|.++.
T Consensus        75 ----~------------~~~v~~~l~~~l~~~~~vv~~~~g~~~  102 (291)
T 1ks9_A           75 ----Q------------VSDAVKSLASTLPVTTPILLIHNGMGT  102 (291)
T ss_dssp             ----G------------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             ----h------------HHHHHHHHHhhCCCCCEEEEecCCCCc
Confidence                1            24455566655 467788888998763

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.21  E-value=3.8e-06  Score=74.12  Aligned_cols=121  Identities=10%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +|||+|||+ |.+|..++..|. .|.  +|.++++++.....+.-....  .+........+.+ .++..++|+||++. 
T Consensus         2 ~mkI~IiGa-Ga~G~~~a~~L~-~g~--~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~-~~~~~~~D~vilav-   75 (307)
T 3ego_A            2 SLKIGIIGG-GSVGLLCAYYLS-LYH--DVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSAD-TSINSDFDLLVVTV-   75 (307)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHH-TTS--EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEE-SSCCSCCSEEEECC-
T ss_pred             CCEEEEECC-CHHHHHHHHHHh-cCC--ceEEEECCHHHHHHHHhCCceEecCCCeeccccccc-ccccCCCCEEEEEe-
Confidence            479999998 999999999999 776  999999875422221101000  0000000000111 24578999999986 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-eecc
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLD  169 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t~ld  169 (258)
                         |+..            +.++++.+....++. |+.+.|-++.    . +.+.+.  +|.++|++- +...
T Consensus        76 ---K~~~------------~~~~l~~l~~~~~~~-ivs~~nGi~~----~-e~l~~~--~~~~~vl~g~~~~~  125 (307)
T 3ego_A           76 ---KQHQ------------LQSVFSSLERIGKTN-ILFLQNGMGH----I-HDLKDW--HVGHSIYVGIVEHG  125 (307)
T ss_dssp             ---CGGG------------HHHHHHHTTSSCCCE-EEECCSSSHH----H-HHHHTC--CCSCEEEEEEECCE
T ss_pred             ---CHHH------------HHHHHHHhhcCCCCe-EEEecCCccH----H-HHHHHh--CCCCcEEEEEEeec
Confidence               3221            345566776665666 8888999872    1 234432  688888754 4443

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=98.21  E-value=1.1e-06  Score=72.28  Aligned_cols=106  Identities=12%  Similarity=0.081  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi~   95 (258)
                      +|||.|+||+|++|++++..|...|...+|+++++++..      .+.    .+..+.+    ..++.+++  +|+||.+
T Consensus         5 ~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~------~~~----~~~~~~~D~~~~~~~~~~~--~d~vi~~   72 (215)
T 2a35_A            5 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA------EHP----RLDNPVGPLAELLPQLDGS--IDTAFCC   72 (215)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC------CCT----TEECCBSCHHHHGGGCCSC--CSEEEEC
T ss_pred             CceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc------cCC----CceEEeccccCHHHHHHhh--hcEEEEC
Confidence            469999999999999999999998865589999987643      010    1111111    11222333  8999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|.......+..+.+..|+.....+++.+.+.+.. .++.+|.
T Consensus        73 a~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss  114 (215)
T 2a35_A           73 LGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSA  114 (215)
T ss_dssp             CCCCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             eeeccccCCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECC
Confidence            98643222344566788999999999998876543 4554543

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=98.20  E-value=2.2e-06  Score=73.84  Aligned_cols=96  Identities=22%  Similarity=0.231  Sum_probs=70.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~   98 (258)
                      |||.|+||+|++|++++..|...|.  +|+.+++..     .|+.+.            .++.++++  ++|+||++|+.
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~-----~D~~d~------------~~~~~~~~~~~~d~vi~~a~~   66 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEY--DIYPFDKKL-----LDITNI------------SQVQQVVQEIRPHIIIHCAAY   66 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTE--EEEEECTTT-----SCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCC--EEEEecccc-----cCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence            4899999999999999999998886  899998732     222221            23445666  79999999986


Q ss_pred             CCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .....  ....+.+..|+.....+++.+.+.+.  .+|.+|
T Consensus        67 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S  105 (287)
T 3sc6_A           67 TKVDQAEKERDLAYVINAIGARNVAVASQLVGA--KLVYIS  105 (287)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEE
T ss_pred             cChHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence            53211  34456778899999999999988865  344444

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.20  E-value=4.4e-06  Score=69.16  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=63.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+||||+|.+|+.++..|...|+  +|.++|+++++...+  ++........+. .   .++.++++++|+||++.. 
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~D~Vi~~~~-   73 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREEKAEAKAAEYRRIAGDASIT-G---MKNEDAAEACDIAVLTIP-   73 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHHHHHHHHHHHHHHHSSCCEE-E---EEHHHHHHHCSEEEECSC-
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhccccccCCCC-h---hhHHHHHhcCCEEEEeCC-
Confidence            5899999449999999999998887  899999876422211  111000001222 1   356678999999999863 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                         +..            .+++++.+.+..++.+++.++|+.+
T Consensus        74 ---~~~------------~~~~~~~l~~~~~~~~vi~~~~g~~  101 (212)
T 1jay_A           74 ---WEH------------AIDTARDLKNILREKIVVSPLVPVS  101 (212)
T ss_dssp             ---HHH------------HHHHHHHTHHHHTTSEEEECCCCEE
T ss_pred             ---hhh------------HHHHHHHHHHHcCCCEEEEcCCCcC
Confidence               111            2233444443335778888999766

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.20  E-value=3.3e-06  Score=72.00  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=63.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~--~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +|||+|||+ |.+|..++..|...|+.  .+|.+||+++++...  +....   .+.   ...+..++++++|+||++. 
T Consensus         2 ~~~i~iIG~-G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~--~~~~~---g~~---~~~~~~e~~~~aDvVilav-   71 (247)
T 3gt0_A            2 DKQIGFIGC-GNMGMAMIGGMINKNIVSSNQIICSDLNTANLKN--ASEKY---GLT---TTTDNNEVAKNADILILSI-   71 (247)
T ss_dssp             CCCEEEECC-SHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHH--HHHHH---CCE---ECSCHHHHHHHCSEEEECS-
T ss_pred             CCeEEEECc-cHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHH--HHHHh---CCE---EeCChHHHHHhCCEEEEEe-
Confidence            479999998 99999999999988863  489999998653222  21110   111   1346678899999999997 


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                         ++..            +.++++.+..+. |+.+++..++.+.
T Consensus        72 ---~~~~------------~~~v~~~l~~~l~~~~~vvs~~~gi~  101 (247)
T 3gt0_A           72 ---KPDL------------YASIINEIKEIIKNDAIIVTIAAGKS  101 (247)
T ss_dssp             ---CTTT------------HHHHC---CCSSCTTCEEEECSCCSC
T ss_pred             ---CHHH------------HHHHHHHHHhhcCCCCEEEEecCCCC
Confidence               2221            345666676654 5666666667666

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=98.20  E-value=2.4e-06  Score=74.54  Aligned_cols=166  Identities=16%  Similarity=0.082  Sum_probs=93.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC--CCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT--GMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aDiVIi~ag   97 (258)
                      |||.|+||+|++|++++..|...|.  +|+++|+..... ...+.. ... .+. ++....++.++++  ++|+||++++
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~-~~~~~~-~~~-~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGL--EVAVLDNLATGK-RENVPK-GVP-FFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEECCCSSCC-GGGSCT-TCC-EECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCCcCc-hhhccc-CeE-EEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            5899999999999999999999887  899998743211 001111 000 010 0101123445666  8999999987


Q ss_pred             CCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHH-----HHHHhCCCCCCcEEEEeeccH
Q 025075           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE-----VFKKAGTYDPKKLLGVTMLDV  170 (258)
Q Consensus        98 ~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~-----~~~~~~~~~~~kviG~t~lds  170 (258)
                      .....  ..+..+.+..|+.....+++.+.+.+.. .+|.+|....    +...     ........++....|.+....
T Consensus        76 ~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~----~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~  150 (311)
T 2p5y_A           76 QASVKVSVEDPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGA----IYGEVPEGERAEETWPPRPKSPYAASKAAF  150 (311)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHH----HHCCCCTTCCBCTTSCCCCCSHHHHHHHHH
T ss_pred             ccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChh----hcCCCCCCCCcCCCCCCCCCChHHHHHHHH
Confidence            54211  0123446778888888999988876543 4444432100    0000     000000011223334444444


Q ss_pred             HHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          171 VRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       171 ~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .++...+++..+++..-++ ..++|..
T Consensus       151 e~~~~~~~~~~~~~~~~lrp~~v~Gp~  177 (311)
T 2p5y_A          151 EHYLSVYGQSYGLKWVSLRYGNVYGPR  177 (311)
T ss_dssp             HHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHcCCCEEEEeeccccCcC
Confidence            5555566677788777777 4688864

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=98.19  E-value=4.7e-06  Score=76.09  Aligned_cols=104  Identities=15%  Similarity=0.324  Sum_probs=69.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCC------CcEEEEEeCCCC---hhHHHHHh--cCC--------CCCeEEEEe
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPL------VSVLHLYDVVNT---PGVTADIS--HMD--------TGAVVRGFL   77 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~------~~ei~L~D~~~~---~g~~~dl~--~~~--------~~~~v~~~~   77 (258)
                      +.+|.||+|||| |..|+++|..|...+.      ..+|.||.++++   +.....+.  |..        ++..+.   
T Consensus        31 ~~~p~KI~ViGa-GsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~---  106 (391)
T 4fgw_A           31 AEKPFKVTVIGS-GNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLV---  106 (391)
T ss_dssp             --CCEEEEEECC-SHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEE---
T ss_pred             cCCCCeEEEECc-CHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcE---
Confidence            345679999998 9999999999987542      136999988764   11222222  221        233444   


Q ss_pred             CCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075           78 GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus        78 ~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                      .++|+.+++++||+||++.  |              ...++++++++..+- ++..+|.++--.
T Consensus       107 ~t~dl~~al~~ad~ii~av--P--------------s~~~r~~l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          107 ANPDLIDSVKDVDIIVFNI--P--------------HQFLPRICSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             EESCHHHHHTTCSEEEECS--C--------------GGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred             EeCCHHHHHhcCCEEEEEC--C--------------hhhhHHHHHHhccccCCCceeEEecccc
Confidence            3579999999999999985  2              122577888888765 566777776543

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=98.19  E-value=9.1e-07  Score=77.02  Aligned_cols=167  Identities=14%  Similarity=0.105  Sum_probs=94.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC--CCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT--GMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aDiVIi   94 (258)
                      +|||.|+||+|++|++++..|...  |.  +|+++|++.......  ....   .+. ++....++.++++  ++|+||+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~~--~~~~---~~~~D~~d~~~~~~~~~~~~~d~vih   74 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTE--NVIASDIRKLNTDVV--NSGP---FEVVNALDFNQIEHLVEVHKITDIYL   74 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGG--GEEEEESCCCSCHHH--HSSC---EEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCC--EEEEEcCCCcccccc--CCCc---eEEecCCCHHHHHHHHhhcCCCEEEE
Confidence            368999999999999999988876  65  899999876432211  1111   111 0111123456677  8999999


Q ss_pred             cCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHH-HHHHHhCCCCCCcEEEEeeccHHH
Q 025075           95 PAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAA-EVFKKAGTYDPKKLLGVTMLDVVR  172 (258)
Q Consensus        95 ~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t-~~~~~~~~~~~~kviG~t~lds~R  172 (258)
                      +|+..... ..+..+.+..|+.....+++.+.+.+.. .+|.+|...-. ..--. ..........+....|.+.+...+
T Consensus        75 ~a~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~-~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~  152 (312)
T 2yy7_A           75 MAALLSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVF-GPTTPKENTPQYTIMEPSTVYGISKQAGER  152 (312)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGC-CTTSCSSSBCSSCBCCCCSHHHHHHHHHHH
T ss_pred             CCccCCCchhhChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHh-CCCCCCCCccccCcCCCCchhHHHHHHHHH
Confidence            99753211 1233456788999999999998876533 44444321100 00000 000000001122233334444445


Q ss_pred             HHHHHHHHhCCCCCcee-EEEEec
Q 025075          173 ANTFVAEVLGLDPRDVD-VPVVGG  195 (258)
Q Consensus       173 ~~~~la~~l~v~~~~v~-~~v~G~  195 (258)
                      +...+++..+++..-++ ..++|.
T Consensus       153 ~~~~~~~~~~~~~~~lrp~~v~g~  176 (312)
T 2yy7_A          153 WCEYYHNIYGVDVRSIRYPGLISW  176 (312)
T ss_dssp             HHHHHHHHHCCEEECEEECEEECS
T ss_pred             HHHHHHHhcCCcEEEEeCCeEecC
Confidence            55556666788777777 568884

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=98.18  E-value=2.2e-06  Score=73.25  Aligned_cols=103  Identities=17%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiVIi~   95 (258)
                      |+||.|+||+|++|++++..|...|.  +|+++|++.....    ..     .+..+.    ...++.++++++|+||++
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~----~~-----~~~~~~~Dl~d~~~~~~~~~~~d~vi~~   70 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAH--EVRLSDIVDLGAA----EA-----HEEIVACDLADAQAVHDLVKDCDGIIHL   70 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEE--EEEECCSSCCCCC----CT-----TEEECCCCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCCCcccc----CC-----CccEEEccCCCHHHHHHHHcCCCEEEEC
Confidence            35899999999999999999998885  8999998764210    00     111111    112356778999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      ++..  ......+.+..|+.....+++.+.+.+.. .++.+
T Consensus        71 a~~~--~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~  108 (267)
T 3ay3_A           71 GGVS--VERPWNDILQANIIGAYNLYEAARNLGKP-RIVFA  108 (267)
T ss_dssp             CSCC--SCCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred             CcCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEe
Confidence            9865  22334556788999889999988876543 44444

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=98.18  E-value=4.1e-06  Score=73.23  Aligned_cols=159  Identities=16%  Similarity=0.140  Sum_probs=92.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~a   96 (258)
                      ++|||.|+||+|++|++++..|...|.  +|++++++..    .|+.+            ..++.++++  ++|+||+++
T Consensus         2 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~v~~~~r~~~----~D~~d------------~~~~~~~~~~~~~d~vih~a   63 (321)
T 1e6u_A            2 AKQRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLD------------SRAVHDFFASERIDQVYLAA   63 (321)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTC------------HHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCC--eEEEEecCcc----CCccC------------HHHHHHHHHhcCCCEEEEcC
Confidence            357999999999999999999998887  7888776421    22221            123456677  999999999


Q ss_pred             CCCCCC---CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH---HHHHHHHHHhCCCCCC-cEEEEeecc
Q 025075           97 GVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV---PIAAEVFKKAGTYDPK-KLLGVTMLD  169 (258)
Q Consensus        97 g~~~~~---g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~---~i~t~~~~~~~~~~~~-kviG~t~ld  169 (258)
                      +.....   ..+..+.+..|+.....+++.+.+.+.. .+|.+|...-.-.   ..+++-........|. ..+|.+.+.
T Consensus        64 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~  142 (321)
T 1e6u_A           64 AKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIA  142 (321)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHH
T ss_pred             eecCCcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHH
Confidence            854211   1123456778999999999998886543 4555543210000   0000000000000110 122333333


Q ss_pred             HHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          170 VVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       170 s~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..++...+++..+++..-++ ..++|..
T Consensus       143 ~E~~~~~~~~~~~~~~~ilrp~~v~G~~  170 (321)
T 1e6u_A          143 GIKLCESYNRQYGRDYRSVMPTNLYGPH  170 (321)
T ss_dssp             HHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCcCCcC
Confidence            44444555566677777777 5688865

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.17  E-value=6.4e-06  Score=70.70  Aligned_cols=95  Identities=14%  Similarity=0.211  Sum_probs=63.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      +|||+|||+ |.+|..++..|...|+ +.+.++|++++....  +... .  .+..   ..+++++++++|+||++..  
T Consensus        10 ~m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~~~~~~~~~--~~~~-~--g~~~---~~~~~~~~~~~Dvvi~av~--   77 (266)
T 3d1l_A           10 DTPIVLIGA-GNLATNLAKALYRKGF-RIVQVYSRTEESARE--LAQK-V--EAEY---TTDLAEVNPYAKLYIVSLK--   77 (266)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHHTC-CEEEEECSSHHHHHH--HHHH-T--TCEE---ESCGGGSCSCCSEEEECCC--
T ss_pred             CCeEEEEcC-CHHHHHHHHHHHHCCC-eEEEEEeCCHHHHHH--HHHH-c--CCce---eCCHHHHhcCCCEEEEecC--
Confidence            479999998 9999999999988776 238999987643222  2211 0  1121   2356678899999999862  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                        +            ....++++.+.+.. |+.+++..++-.
T Consensus        78 --~------------~~~~~v~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           78 --D------------SAFAELLQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             --H------------HHHHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred             --H------------HHHHHHHHHHHhhcCCCcEEEECCCCC
Confidence              0            01255666666655 677887777643

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.17  E-value=9.2e-06  Score=72.01  Aligned_cols=67  Identities=18%  Similarity=0.287  Sum_probs=51.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++|||+|||+ |.+|..++..|...|+  +|.+||+++++..  ++....    +..   .+++++++++||+||++.
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~--~l~~~g----~~~---~~~~~e~~~~aDvVi~~v   95 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGY--ALQVWNRTPARAA--SLAALG----ATI---HEQARAAARDADIVVSML   95 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTT----CEE---ESSHHHHHTTCSEEEECC
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCC--eEEEEcCCHHHHH--HHHHCC----CEe---eCCHHHHHhcCCEEEEEC
Confidence            34579999998 9999999999999997  8999999865322  233221    221   246788999999999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.15  E-value=5.6e-06  Score=72.71  Aligned_cols=67  Identities=16%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ++|||+|||+ |.+|..++..|...|+  +|.+||+++++...  +.....  ..  .  ..++++++++||+||++.
T Consensus         6 ~~~~I~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~--~~~~g~--~~--~--~~~~~e~~~~aDvvi~~v   72 (303)
T 3g0o_A            6 TDFHVGIVGL-GSMGMGAARSCLRAGL--STWGADLNPQACAN--LLAEGA--CG--A--AASAREFAGVVDALVILV   72 (303)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHHTTC--SE--E--ESSSTTTTTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHHH--HHHcCC--cc--c--cCCHHHHHhcCCEEEEEC
Confidence            4579999998 9999999999999998  99999998653222  222211  11  0  235568899999999986

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=98.15  E-value=4.1e-06  Score=74.04  Aligned_cols=112  Identities=17%  Similarity=0.062  Sum_probs=71.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--CchHhhhCC--CCE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQLENALTG--MDL   91 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~~--aDi   91 (258)
                      .++|||.|+||+|++|++++..|...|.  +|+++|++..... ..+...   ..+..+.+  +  .++.+++++  +|+
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~-~~l~~~---~~~~~~~~Dl~d~~~~~~~~~~~~~D~   92 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGD--KVVGIDNFATGRR-EHLKDH---PNLTFVEGSIADHALVNQLIGDLQPDA   92 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCG-GGSCCC---TTEEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCCccch-hhHhhc---CCceEEEEeCCCHHHHHHHHhccCCcE
Confidence            3567999999999999999999998886  8999998753111 011110   12222211  1  134566777  999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ||.+||..........+ +..|+.....+++.+.+.+.. .||.+|
T Consensus        93 vih~A~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~-~iV~~S  136 (333)
T 2q1w_A           93 VVHTAASYKDPDDWYND-TLTNCVGGSNVVQAAKKNNVG-RFVYFQ  136 (333)
T ss_dssp             EEECCCCCSCTTCHHHH-HHHHTHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             EEECceecCCCccCChH-HHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence            99999864332122223 778888889999988876533 455443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.14  E-value=7.6e-06  Score=71.21  Aligned_cols=64  Identities=8%  Similarity=0.118  Sum_probs=49.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+ |.+|..++..|...|+  +|.+||+++++...  +.+..    +.   ..+++++++++||+||++.
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~--~~~~g----~~---~~~~~~~~~~~aDvvi~~v   65 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGC--SVTIWNRSPEKAEE--LAALG----AE---RAATPCEVVESCPVTFAML   65 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSGGGGHH--HHHTT----CE---ECSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHCC----Ce---ecCCHHHHHhcCCEEEEEc
Confidence            69999998 9999999999999997  99999998764332  22211    11   1356788899999999986

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=98.14  E-value=1.7e-06  Score=74.64  Aligned_cols=106  Identities=11%  Similarity=0.064  Sum_probs=66.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCC-CCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTG-MDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~-aDiVIi~   95 (258)
                      |++|||.|+|+ |++|++++..|...|.  +|+.++++....      ..... .+. ++....++.+++++ +|+||.+
T Consensus         1 M~~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~------~~~~~-~~~~Dl~d~~~~~~~~~~~~d~vih~   70 (286)
T 3gpi_A            1 MSLSKILIAGC-GDLGLELARRLTAQGH--EVTGLRRSAQPM------PAGVQ-TLIADVTRPDTLASIVHLRPEILVYC   70 (286)
T ss_dssp             -CCCCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECTTSCC------CTTCC-EEECCTTCGGGCTTGGGGCCSEEEEC
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCcccc------ccCCc-eEEccCCChHHHHHhhcCCCCEEEEe
Confidence            34679999996 9999999999999887  899999875420      00000 011 01111234456777 9999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      |+...   .+..+....|+.....+++.+.+.+.. .+|.+|
T Consensus        71 a~~~~---~~~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~S  108 (286)
T 3gpi_A           71 VAASE---YSDEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVS  108 (286)
T ss_dssp             HHHHH---HC-----CCSHHHHHHHHHHTTTSCCC-EEEEEE
T ss_pred             CCCCC---CCHHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEc
Confidence            87431   122345567888899999999875543 444443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.13  E-value=1.4e-05  Score=70.49  Aligned_cols=66  Identities=14%  Similarity=0.218  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +++||+|||. |.+|..++..|...|+  +|.+||+++++...  +....    ..   ...++.+++++||+||++.
T Consensus         8 ~~~~IgiIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~--~~~~g----~~---~~~~~~e~~~~aDvVi~~v   73 (306)
T 3l6d_A            8 FEFDVSVIGL-GAMGTIMAQVLLKQGK--RVAIWNRSPGKAAA--LVAAG----AH---LCESVKAALSASPATIFVL   73 (306)
T ss_dssp             CSCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHH--HHHHT----CE---ECSSHHHHHHHSSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHCC----Ce---ecCCHHHHHhcCCEEEEEe
Confidence            4579999998 9999999999999997  89999998653222  22211    11   1346788899999999986

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.13  E-value=8.7e-06  Score=72.55  Aligned_cols=99  Identities=14%  Similarity=0.110  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC------CCCeEEEEeCCCchHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD------TGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~------~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      ++|||+|||+ |.+|..++..|...|+  +|.++|++++....+.-....      ..........+++++++++++|+|
T Consensus         3 ~~mki~iiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   79 (359)
T 1bg6_A            3 ESKTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVI   79 (359)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEE
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEE
Confidence            3579999998 9999999999998887  899999876432221111000      000000001135677789999999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI  136 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~  136 (258)
                      |++....    .            ..++++.+..+. |+.+++..
T Consensus        80 i~~v~~~----~------------~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           80 LIVVPAI----H------------HASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             EECSCGG----G------------HHHHHHHHGGGCCTTCEEEES
T ss_pred             EEeCCch----H------------HHHHHHHHHHhCCCCCEEEEc
Confidence            9997321    1            134556666554 55656555

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.12  E-value=2e-05  Score=67.93  Aligned_cols=91  Identities=14%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+|||+ |.+|..++..|...|+  +|.++|++++....  +.......  ..   ..+++++ +++|+||++..   
T Consensus         1 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~g~~~--~~---~~~~~~~-~~~D~vi~av~---   66 (279)
T 2f1k_A            1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEK--AVERQLVD--EA---GQDLSLL-QTAKIIFLCTP---   66 (279)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHHTTSCS--EE---ESCGGGG-TTCSEEEECSC---
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHhCCCCc--cc---cCCHHHh-CCCCEEEEECC---
Confidence            58999997 9999999999998887  89999987643222  22111111  11   2355666 99999999962   


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       +            ..+.++++.+..+. |+.+++.++|
T Consensus        67 -~------------~~~~~~~~~l~~~~~~~~~vv~~~~   92 (279)
T 2f1k_A           67 -I------------QLILPTLEKLIPHLSPTAIVTDVAS   92 (279)
T ss_dssp             -H------------HHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             -H------------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence             1            12455666666654 6777776654

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=98.12  E-value=2.2e-05  Score=73.19  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=77.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhC---CCCcEEEEEeCCCChhHH-HHHhcCC--------------CCCeEEEEeC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKIN---PLVSVLHLYDVVNTPGVT-ADISHMD--------------TGAVVRGFLG   78 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~---~~~~ei~L~D~~~~~g~~-~dl~~~~--------------~~~~v~~~~~   78 (258)
                      ..++++|.|+||+|++|+.++..|...   |.  +|+++++....... ..+.+..              ....+..+.+
T Consensus        70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~--~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~  147 (478)
T 4dqv_A           70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDG--RLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAG  147 (478)
T ss_dssp             CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTC--EEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEEC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCC--EEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEe
Confidence            345679999999999999999988876   54  99999987652211 1111110              0113333322


Q ss_pred             C----------CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           79 Q----------PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        79 ~----------~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .          .++.+.++++|+||.+|+....  ....+.+..|+.....+++.+.+...+-++.+-|
T Consensus       148 Dl~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~--~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS  214 (478)
T 4dqv_A          148 DKSEPDLGLDQPMWRRLAETVDLIVDSAAMVNA--FPYHELFGPNVAGTAELIRIALTTKLKPFTYVST  214 (478)
T ss_dssp             CTTSGGGGCCHHHHHHHHHHCCEEEECCSSCSB--SSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEE
T ss_pred             ECCCcccCCCHHHHHHHHcCCCEEEECccccCC--cCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEee
Confidence            1          1245667899999999986432  3334567889999999999998876554554444

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=98.12  E-value=3.7e-06  Score=74.03  Aligned_cols=109  Identities=15%  Similarity=0.086  Sum_probs=71.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--C-chHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--P-QLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~-d~~~a~~~aDiVIi   94 (258)
                      |||.|+||+|++|++++..|... |.  +|+++|++.....  ++...   ..+..+.+  +  . .+.++++++|+||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~--~V~~~~r~~~~~~--~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~d~vih   73 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVVLP   73 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC--EEEEEESCCGGGG--GGTTC---TTEEEEECCTTTCSHHHHHHHHHCSEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCC--EEEEEeCCcchHH--HhhcC---CCeEEEeccccCcHHHHHhhccCCCEEEE
Confidence            58999999999999999999887 66  8999998764221  11111   12222211  1  1 24567789999999


Q ss_pred             cCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        95 ~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|+.....  ..+..+.+..|+.....+++.+.+.+  ..+|.+|.
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~--~~~v~~SS  117 (345)
T 2bll_A           74 LVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  117 (345)
T ss_dssp             CBCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             cccccCccchhcCHHHHHHHHHHHHHHHHHHHHHhC--CeEEEEec
Confidence            99854211  11234566778888888888888765  45665554

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=98.12  E-value=5.2e-06  Score=71.62  Aligned_cols=97  Identities=16%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDiVIi~   95 (258)
                      |||.|+||+|++|++++..|... +.  +|++++++..+..  ++...    .+..+.    ...++.++++++|+||++
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~--~V~~~~R~~~~~~--~~~~~----~v~~~~~D~~d~~~l~~~~~~~d~vi~~   72 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHID--HFHIGVRNVEKVP--DDWRG----KVSVRQLDYFNQESMVEAFKGMDTVVFI   72 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCT--TEEEEESSGGGSC--GGGBT----TBEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCC--cEEEEECCHHHHH--HhhhC----CCEEEEcCCCCHHHHHHHHhCCCEEEEe
Confidence            68999999999999999998876 65  7999988764221  12111    122111    112466789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEE
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~v  133 (258)
                      ++....        ...|+...+.+++.+++.+..-++
T Consensus        73 a~~~~~--------~~~~~~~~~~l~~aa~~~gv~~iv  102 (289)
T 3e48_A           73 PSIIHP--------SFKRIPEVENLVYAAKQSGVAHII  102 (289)
T ss_dssp             CCCCCS--------HHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcc--------chhhHHHHHHHHHHHHHcCCCEEE
Confidence            875321        134677778888888887644333

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.12  E-value=1.8e-05  Score=69.28  Aligned_cols=91  Identities=20%  Similarity=0.283  Sum_probs=61.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      +|||+|||+ |.+|..++..|...|+  +|.+||+++++...+  ....    +.   .+++++++++ ||+||++...+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~~--~~~g----~~---~~~~~~~~~~-aDvvi~~vp~~   81 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPG--GVTVYDIRIEAMTPL--AEAG----AT---LADSVADVAA-ADLIHITVLDD   81 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTT--CEEEECSSTTTSHHH--HHTT----CE---ECSSHHHHTT-SSEEEECCSSH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHH--HHCC----CE---EcCCHHHHHh-CCEEEEECCCh
Confidence            368999998 9999999999999987  899999987643322  2211    12   1357778888 99999986311


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                                     ..++++++.+.+.. |+.+++..|+
T Consensus        82 ---------------~~~~~v~~~l~~~l~~g~ivv~~st  106 (296)
T 3qha_A           82 ---------------AQVREVVGELAGHAKPGTVIAIHST  106 (296)
T ss_dssp             ---------------HHHHHHHHHHHTTCCTTCEEEECSC
T ss_pred             ---------------HHHHHHHHHHHHhcCCCCEEEEeCC
Confidence                           11344445565554 5556655543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=98.11  E-value=4e-06  Score=70.57  Aligned_cols=101  Identities=15%  Similarity=0.130  Sum_probs=63.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhhCCCCE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDL   91 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~~aDi   91 (258)
                      +++|++|.|+||+|++|+.++..|+..| .  +|+++++++.....  +..    ..+..+.    ...++.++++++|+
T Consensus        20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~--~V~~~~R~~~~~~~--~~~----~~~~~~~~Dl~d~~~~~~~~~~~D~   91 (236)
T 3qvo_A           20 QGHMKNVLILGAGGQIARHVINQLADKQTI--KQTLFARQPAKIHK--PYP----TNSQIIMGDVLNHAALKQAMQGQDI   91 (236)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCTTE--EEEEEESSGGGSCS--SCC----TTEEEEECCTTCHHHHHHHHTTCSE
T ss_pred             cCcccEEEEEeCCcHHHHHHHHHHHhCCCc--eEEEEEcChhhhcc--ccc----CCcEEEEecCCCHHHHHHHhcCCCE
Confidence            5556789999999999999999999988 5  89999987642111  111    1222211    11245677899999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ||.++|..      ..+      ...+.+++.+++.+.. .||++|.
T Consensus        92 vv~~a~~~------~~~------~~~~~~~~~~~~~~~~-~iV~iSS  125 (236)
T 3qvo_A           92 VYANLTGE------DLD------IQANSVIAAMKACDVK-RLIFVLS  125 (236)
T ss_dssp             EEEECCST------THH------HHHHHHHHHHHHTTCC-EEEEECC
T ss_pred             EEEcCCCC------chh------HHHHHHHHHHHHcCCC-EEEEEec
Confidence            99998632      111      1234667777666533 5555554

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=98.10  E-value=2.7e-06  Score=73.64  Aligned_cols=162  Identities=13%  Similarity=0.034  Sum_probs=89.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC--CCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVIi~   95 (258)
                      +++|||.|+||+|++|++++..|...|..........   .....|+.+            ..++.+++++  +|+||++
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~~~~---~~~~~D~~d------------~~~~~~~~~~~~~d~Vih~   68 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAGLPGEDWVFV---SSKDADLTD------------TAQTRALFEKVQPTHVIHL   68 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTCCTTCEEEEC---CTTTCCTTS------------HHHHHHHHHHSCCSEEEEC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCCccccccccc---CceecccCC------------HHHHHHHHhhcCCCEEEEC
Confidence            5678999999999999999999998875100000000   000111111            1234566766  9999999


Q ss_pred             CCCCCC---CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH----HHHHHHHHHhCCCCCCc-EEEEee
Q 025075           96 AGVPRK---PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV----PIAAEVFKKAGTYDPKK-LLGVTM  167 (258)
Q Consensus        96 ag~~~~---~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~----~i~t~~~~~~~~~~~~k-viG~t~  167 (258)
                      |+....   ......+.+..|+.....+++.+.+.+.+ .+|.+|.. .+..    ..+++-........+.. ..|.+.
T Consensus        69 A~~~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~-~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK  146 (319)
T 4b8w_A           69 AAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLST-CIFPDKTTYPIDETMIHNGPPHNSNFGYSYAK  146 (319)
T ss_dssp             CCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCG-GGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHH
T ss_pred             ceecccccccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcch-hhcCCCCCCCccccccccCCCCCCcchHHHHH
Confidence            986321   11234567888999999999999887654 34444321 1000    00000000000011111 233344


Q ss_pred             ccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +...++...+++..+++..-++ ..++|..
T Consensus       147 ~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~  176 (319)
T 4b8w_A          147 RMIDVQNRAYFQQYGCTFTAVIPTNVFGPH  176 (319)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeeccccCCC
Confidence            4445555566677787777777 4688865

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=98.10  E-value=1.8e-05  Score=66.62  Aligned_cols=104  Identities=19%  Similarity=0.169  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCCCCCeEEEEeCCCchHhhhC----CCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALT----GMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aDiV   92 (258)
                      |++|.|+||+|++|++++..|+..|.  +|++.|++....   ...|+.+.            .+++++++    +.|+|
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~D~~~~------------~~~~~~~~~~~~~~d~v   66 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGH--TVIGIDRGQADIEADLSTPGGRE------------TAVAAVLDRCGGVLDGL   66 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHHHHTTCCSEE
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCChhHccccccCCcccH------------HHHHHHHHHcCCCccEE
Confidence            34799999999999999999999887  899999876421   11122211            12334443    89999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      |.+||..... ....+.+..|+.-...+++.+.+.   ...+.++++|.
T Consensus        67 i~~Ag~~~~~-~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS  114 (255)
T 2dkn_A           67 VCCAGVGVTA-ANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGS  114 (255)
T ss_dssp             EECCCCCTTS-SCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECC
T ss_pred             EECCCCCCcc-hhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEec
Confidence            9999875422 234456677777666666655544   22356666653

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=98.10  E-value=5.6e-06  Score=73.94  Aligned_cols=113  Identities=18%  Similarity=0.202  Sum_probs=75.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC----CCchHhhhCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG----QPQLENALTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDi   91 (258)
                      +.++|.|+||+|++|++++..|+.. |. .+|+++++++.+..  ..++..    ..+..+.+    ..++.++++++|+
T Consensus        20 ~~k~vlVTGatG~iG~~l~~~L~~~~g~-~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           20 DNQTILITGGTGSFGKCFVRKVLDTTNA-KKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCCC-SEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCC-CEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            3468999999999999999998887 64 38999998754221  112221    12222221    1234567889999


Q ss_pred             EEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           92 VIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        92 VIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ||.+|+....+.  ....+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        95 Vih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~S  141 (344)
T 2gn4_A           95 CIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNAIS-QVIALS  141 (344)
T ss_dssp             EEECCCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEC
T ss_pred             EEECCCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEec
Confidence            999998653211  123467788999999999999887644 444444

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=98.09  E-value=4.4e-06  Score=72.55  Aligned_cols=107  Identities=13%  Similarity=0.025  Sum_probs=68.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +++|.|+||+|++|++++..|...| .  +|++++++.......++.....  .+..  +....++.++++++|+||+++
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~--~V~~~~R~~~~~~~~~l~~~~~--~~~~~D~~d~~~l~~~~~~~d~vi~~a   80 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF--KVRVVTRNPRKKAAKELRLQGA--EVVQGDQDDQVIMELALNGAYATFIVT   80 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS--EEEEEESCTTSHHHHHHHHTTC--EEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc--eEEEEEcCCCCHHHHHHHHCCC--EEEEecCCCHHHHHHHHhcCCEEEEeC
Confidence            3689999999999999999988876 5  8999999865332223322211  1111  111124567899999999998


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.....      ....|+...+.+++.+.+.+.. .++..|
T Consensus        81 ~~~~~~------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S  114 (299)
T 2wm3_A           81 NYWESC------SQEQEVKQGKLLADLARRLGLH-YVVYSG  114 (299)
T ss_dssp             CHHHHT------CHHHHHHHHHHHHHHHHHHTCS-EEEECC
T ss_pred             CCCccc------cchHHHHHHHHHHHHHHHcCCC-EEEEEc
Confidence            642111      1245677778888888876543 344333

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.09  E-value=2.9e-06  Score=71.00  Aligned_cols=95  Identities=15%  Similarity=0.132  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |.++|||+|||+ |.+|..++..|...|+  +|.++|+++++..  ++...    .+..   . ++.++++++|+||++.
T Consensus        25 ~~~~~~I~iiG~-G~~G~~la~~l~~~g~--~V~~~~r~~~~~~--~~~~~----g~~~---~-~~~~~~~~~DvVi~av   91 (215)
T 2vns_A           25 PDEAPKVGILGS-GDFARSLATRLVGSGF--KVVVGSRNPKRTA--RLFPS----AAQV---T-FQEEAVSSPEVIFVAV   91 (215)
T ss_dssp             ----CCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSHHHHH--HHSBT----TSEE---E-EHHHHTTSCSEEEECS
T ss_pred             CCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHH--HHHHc----CCce---e-cHHHHHhCCCEEEECC
Confidence            445689999997 9999999999998887  8999998754322  23222    1221   1 4567899999999987


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..    ... .+++           + +....++.+++.++|+..
T Consensus        92 ~~----~~~-~~v~-----------~-l~~~~~~~~vv~~s~g~~  119 (215)
T 2vns_A           92 FR----EHY-SSLC-----------S-LSDQLAGKILVDVSNPTE  119 (215)
T ss_dssp             CG----GGS-GGGG-----------G-GHHHHTTCEEEECCCCCH
T ss_pred             Ch----HHH-HHHH-----------H-HHHhcCCCEEEEeCCCcc
Confidence            31    111 1111           1 222236788988999876

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=98.09  E-value=1.8e-05  Score=68.96  Aligned_cols=113  Identities=9%  Similarity=-0.036  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC---hhH-HHHHhcCCCCCeEEEE----eCCCchHhhhCCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT---PGV-TADISHMDTGAVVRGF----LGQPQLENALTGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~---~g~-~~dl~~~~~~~~v~~~----~~~~d~~~a~~~aDi   91 (258)
                      +||.|+||+|++|++++..|+..|.  +|+..++ +..   ... ..++...  ...+..+    ....++.++++++|+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~   77 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGY--SVNTTIRADPERKRDVSFLTNLPGA--SEKLHFFNADLSNPDSFAAAIEGCVG   77 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEECCCC----CCCHHHHTSTTH--HHHEEECCCCTTCGGGGHHHHTTCSE
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCC--EEEEEEeCCccchhHHHHHHhhhcc--CCceEEEecCCCCHHHHHHHHcCCCE
Confidence            4899999999999999999999887  8888876 432   111 1111100  0011111    112346678899999


Q ss_pred             EEEcCCCCCCCCCc-hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           92 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        92 VIi~ag~~~~~g~~-r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ||++|+.......+ ..+++..|+.-...+++.+.+...-..||.+|
T Consensus        78 vih~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~S  124 (322)
T 2p4h_X           78 IFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTS  124 (322)
T ss_dssp             EEECCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEE
T ss_pred             EEEcCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEec
Confidence            99998632111111 23477889999999999888762123455443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.09  E-value=1.5e-05  Score=70.42  Aligned_cols=96  Identities=24%  Similarity=0.239  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC--CCChhHHHHHhcCCC----C---CeEEEEeCCC--chHhhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV--VNTPGVTADISHMDT----G---AVVRGFLGQP--QLENALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~--~~~~g~~~dl~~~~~----~---~~v~~~~~~~--d~~~a~~~a   89 (258)
                      |||+|||+ |.+|+.++..|...|+  +|.++|+  ++++..  .+.....    .   ..+..   ++  ++.++++++
T Consensus         1 m~I~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~--~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~   72 (335)
T 1txg_A            1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILK--SISAGREHPRLGVKLNGVEI---FWPEQLEKCLENA   72 (335)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHH--HHHTTCCBTTTTBCCCSEEE---ECGGGHHHHHTTC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEEccCCHHHHH--HHHHhCcCcccCccccceEE---ecHHhHHHHHhcC
Confidence            58999998 9999999999988887  8999998  654222  2222110    0   11221   23  666789999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      |+||++....    .            +.++++.+....|+.+++.++|.+
T Consensus        73 D~vi~~v~~~----~------------~~~v~~~i~~l~~~~~vv~~~ng~  107 (335)
T 1txg_A           73 EVVLLGVSTD----G------------VLPVMSRILPYLKDQYIVLISKGL  107 (335)
T ss_dssp             SEEEECSCGG----G------------HHHHHHHHTTTCCSCEEEECCCSE
T ss_pred             CEEEEcCChH----H------------HHHHHHHHhcCCCCCEEEEEcCcC
Confidence            9999997311    1            233444454434677888888876

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.08  E-value=3.3e-06  Score=62.73  Aligned_cols=73  Identities=26%  Similarity=0.353  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--CCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~~d~~~a~~~aDiVIi~a   96 (258)
                      +++||+|+|+ |.+|+.++..|...|. .+|+++|+++.+...  +.+...  .......  ..++.+.++++|+||.++
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~-~~v~~~~r~~~~~~~--~~~~~~--~~~~~d~~~~~~~~~~~~~~d~vi~~~   77 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSN-YSVTVADHDLAALAV--LNRMGV--ATKQVDAKDEAGLAKALGGFDAVISAA   77 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSS-EEEEEEESCHHHHHH--HHTTTC--EEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCC-ceEEEEeCCHHHHHH--HHhCCC--cEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4569999999 9999999999998882 289999997643222  221111  1111111  124556788999999998


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      +
T Consensus        78 ~   78 (118)
T 3ic5_A           78 P   78 (118)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.08  E-value=9.1e-06  Score=70.70  Aligned_cols=65  Identities=14%  Similarity=0.159  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||+|||+ |.+|..++..|...|+  +|.+||+++++...+  ....    ..   ..+++++++++||+||++.
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~--~V~~~dr~~~~~~~~--~~~g----~~---~~~~~~~~~~~advvi~~v   65 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGF--DVTVWNRNPAKCAPL--VALG----AR---QASSPAEVCAACDITIAML   65 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTC--CEEEECSSGGGGHHH--HHHT----CE---ECSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHHHHH--HHCC----Ce---ecCCHHHHHHcCCEEEEEc
Confidence            469999997 9999999999998887  899999987643322  1111    11   1356788899999999986

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=98.07  E-value=5.3e-06  Score=71.77  Aligned_cols=99  Identities=16%  Similarity=0.156  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC--CCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG--MDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~--aDiVIi~ag~   98 (258)
                      |||.|+||+|++|++++..|. .|.  +|+.+|++... ...|+.+            ..++.+++++  +|+||++++.
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~--~V~~~~r~~~~-~~~D~~d------------~~~~~~~~~~~~~d~vih~a~~   64 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVG--NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTS--EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCC--eEEEecccccc-ccccCCC------------HHHHHHHHHhcCCCEEEECccc
Confidence            589999999999999999998 776  89999986520 0011111            1234566776  9999999985


Q ss_pred             CCC--CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           99 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        99 ~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ...  ...+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~S  103 (299)
T 1n2s_A           65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA--WVVHYS  103 (299)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEE
T ss_pred             CCHhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEe
Confidence            431  1123456678899999999999987654  455554

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=98.07  E-value=8.2e-06  Score=72.45  Aligned_cols=97  Identities=16%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCC---
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTG---   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~-----~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~---   88 (258)
                      |||.|+||+|++|++++..|...|     .  +|+.+|++.....   +.+    ..+..+.+    ..++.+++++   
T Consensus         2 ~~vlVtGatG~iG~~l~~~L~~~g~~~~~~--~V~~~~r~~~~~~---~~~----~~~~~~~~Dl~d~~~~~~~~~~~~~   72 (364)
T 2v6g_A            2 SVALIVGVTGIIGNSLAEILPLADTPGGPW--KVYGVARRTRPAW---HED----NPINYVQCDISDPDDSQAKLSPLTD   72 (364)
T ss_dssp             EEEEEETTTSHHHHHHHHHTTSTTCTTCSE--EEEEEESSCCCSC---CCS----SCCEEEECCTTSHHHHHHHHTTCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCCce--EEEEEeCCCCccc---ccc----CceEEEEeecCCHHHHHHHHhcCCC
Confidence            689999999999999999998887     5  8999998764221   111    11221111    1234567888   


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP  129 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p  129 (258)
                      +|+||++|+...   .+..+....|+.....+++.+.+.++
T Consensus        73 ~d~vih~a~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~  110 (364)
T 2v6g_A           73 VTHVFYVTWANR---STEQENCEANSKMFRNVLDAVIPNCP  110 (364)
T ss_dssp             CCEEEECCCCCC---SSHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred             CCEEEECCCCCc---chHHHHHHHhHHHHHHHHHHHHHhcc
Confidence            999999998652   34556778899999999999998744

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=98.07  E-value=7.5e-06  Score=72.35  Aligned_cols=114  Identities=18%  Similarity=0.086  Sum_probs=71.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--------hHHHHHhcCCCCCeEEEEeC--C--CchHhhhC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--------GVTADISHMDTGAVVRGFLG--Q--PQLENALT   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--------g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~   87 (258)
                      +|+|.|+||+|++|++++..|...|.  +|+++|+....        ....++.... ...+..+.+  +  .++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~   78 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFK   78 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCcccccccccHHHHHHHHhcc-CCceEEEECCCCCHHHHHHHHH
Confidence            46999999999999999999998886  89999874321        1111222100 011221111  1  13445666


Q ss_pred             --CCCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           88 --GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                        ++|+||++|+.....  .....+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        79 ~~~~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  131 (348)
T 1ek6_A           79 KYSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSS  131 (348)
T ss_dssp             HCCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEE
T ss_pred             hcCCCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCC-EEEEEC
Confidence              899999999854211  0123456788999999999988876543 444444

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.07  E-value=1.4e-05  Score=72.31  Aligned_cols=92  Identities=13%  Similarity=0.209  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC---CEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM---DLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a---DiVIi~ag   97 (258)
                      |||+|||. |.+|..++..|...|+  +|.+||+++++..  ++....    +   ...++++++++++   |+||++..
T Consensus        23 mkIgiIGl-G~mG~~~A~~L~~~G~--~V~v~dr~~~~~~--~l~~~g----~---~~~~s~~e~~~~a~~~DvVi~~vp   90 (358)
T 4e21_A           23 MQIGMIGL-GRMGADMVRRLRKGGH--ECVVYDLNVNAVQ--ALEREG----I---AGARSIEEFCAKLVKPRVVWLMVP   90 (358)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTT----C---BCCSSHHHHHHHSCSSCEEEECSC
T ss_pred             CEEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHHH--HHHHCC----C---EEeCCHHHHHhcCCCCCEEEEeCC
Confidence            79999997 9999999999999997  9999999764322  233221    1   1235677888888   99999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                      .+                .+.++++.+.... |+.+||..||-.
T Consensus        91 ~~----------------~v~~vl~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           91 AA----------------VVDSMLQRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             GG----------------GHHHHHHHHGGGCCTTCEEEECSSCC
T ss_pred             HH----------------HHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence            11                1344455666654 667777766543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.07  E-value=1.9e-05  Score=69.76  Aligned_cols=67  Identities=12%  Similarity=0.180  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~--~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+|||+|||+ |.+|..++..|...|+ .+|.+||+++  ....  .+....    +..   .+++.+++++||+||++.
T Consensus        23 ~~~~I~iIG~-G~mG~~~A~~L~~~G~-~~V~~~dr~~~~~~~~--~~~~~g----~~~---~~~~~e~~~~aDvVi~~v   91 (312)
T 3qsg_A           23 NAMKLGFIGF-GEAASAIASGLRQAGA-IDMAAYDAASAESWRP--RAEELG----VSC---KASVAEVAGECDVIFSLV   91 (312)
T ss_dssp             --CEEEEECC-SHHHHHHHHHHHHHSC-CEEEEECSSCHHHHHH--HHHHTT----CEE---CSCHHHHHHHCSEEEECS
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCC-CeEEEEcCCCCHHHHH--HHHHCC----CEE---eCCHHHHHhcCCEEEEec
Confidence            3579999998 9999999999998875 5899999973  2211  122211    111   346678899999999987

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=98.06  E-value=6.6e-06  Score=70.73  Aligned_cols=102  Identities=13%  Similarity=0.156  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||.|+||+|++|++++..|...  |.  +|+.++++......  +.....  .+..  +....++.++++++|+||+++
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--l~~~~~--~~~~~D~~d~~~l~~~~~~~d~vi~~a   74 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPAS--QIIAIVRNVEKAST--LADQGV--EVRHGDYNQPESLQKAFAGVSKLLFIS   74 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTTHH--HHHTTC--EEEECCTTCHHHHHHHTTTCSEEEECC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCC--eEEEEEcCHHHHhH--HhhcCC--eEEEeccCCHHHHHHHHhcCCEEEEcC
Confidence            47999999999999999999887  65  89999987653322  221111  1111  111124567889999999998


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +..  ++  .    ..|+...+.+++.+.+.+.. .++.+|
T Consensus        75 ~~~--~~--~----~~n~~~~~~l~~a~~~~~~~-~~v~~S  106 (287)
T 2jl1_A           75 GPH--YD--N----TLLIVQHANVVKAARDAGVK-HIAYTG  106 (287)
T ss_dssp             CCC--SC--H----HHHHHHHHHHHHHHHHTTCS-EEEEEE
T ss_pred             CCC--cC--c----hHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            752  11  1    34777888888888876544 344443

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=98.06  E-value=4.6e-06  Score=74.09  Aligned_cols=95  Identities=18%  Similarity=0.131  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHH---HHHhcCCCCCeEEE--EeCCCchHhhhC--
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVT---ADISHMDTGAVVRG--FLGQPQLENALT--   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~---~dl~~~~~~~~v~~--~~~~~d~~~a~~--   87 (258)
                      ++.++||.|+||+|++|++++..|...|.  +|++++++..  ....   .++.....  .+..  +....++.++++  
T Consensus         7 ~M~~~~IlVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~l~~~~v--~~~~~Dl~d~~~l~~~~~~~   82 (346)
T 3i6i_A            7 PSPKGRVLIAGATGFIGQFVATASLDAHR--PTYILARPGPRSPSKAKIFKALEDKGA--IIVYGLINEQEAMEKILKEH   82 (346)
T ss_dssp             ----CCEEEECTTSHHHHHHHHHHHHTTC--CEEEEECSSCCCHHHHHHHHHHHHTTC--EEEECCTTCHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCC--CEEEEECCCCCChhHHHHHHHHHhCCc--EEEEeecCCHHHHHHHHhhC
Confidence            34457999999999999999999998886  8999998762  1111   12222111  1111  111124567788  


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~  128 (258)
                      ++|+||++++..             |+...+.+++.+.+.+
T Consensus        83 ~~d~Vi~~a~~~-------------n~~~~~~l~~aa~~~g  110 (346)
T 3i6i_A           83 EIDIVVSTVGGE-------------SILDQIALVKAMKAVG  110 (346)
T ss_dssp             TCCEEEECCCGG-------------GGGGHHHHHHHHHHHC
T ss_pred             CCCEEEECCchh-------------hHHHHHHHHHHHHHcC
Confidence            999999998742             4555567777777776

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=98.04  E-value=3.4e-06  Score=74.46  Aligned_cols=114  Identities=22%  Similarity=0.235  Sum_probs=72.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-C
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-T   87 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~-----~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-~   87 (258)
                      .++|+|.|+||+|++|++++..|...|.     ..+|+++|++......  .    ....+..+.    ...++.+++ .
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~--~----~~~~~~~~~~Dl~d~~~~~~~~~~   85 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA--G----FSGAVDARAADLSAPGEAEKLVEA   85 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT--T----CCSEEEEEECCTTSTTHHHHHHHT
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc--c----cCCceeEEEcCCCCHHHHHHHHhc
Confidence            4567999999999999999999988771     0289999987532110  0    111222221    122345566 4


Q ss_pred             CCCEEEEcCCCCCCC-CCchhhHHHHhHHHHHHHHHHhhhhC----CCcEEEEec
Q 025075           88 GMDLVIIPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~-g~~r~d~~~~n~~i~~~i~~~i~~~~----p~a~viv~t  137 (258)
                      ++|+||++|+..... ..+..+.+..|+.....+++.+.+..    +...+|.+|
T Consensus        86 ~~d~vih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~S  140 (342)
T 2hrz_A           86 RPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTS  140 (342)
T ss_dssp             CCSEEEECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCCEEEECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeC
Confidence            899999999854210 11234456778888888888887765    234555444

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.04  E-value=4e-05  Score=61.93  Aligned_cols=136  Identities=14%  Similarity=0.044  Sum_probs=79.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhh--hCCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA--LTGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a--~~~aDiVI   93 (258)
                      .+||.|+|+ |.+|..++..|... |.  +|+++|.++++...  +.....  .+. ....++   +.++  ++++|+||
T Consensus        39 ~~~v~IiG~-G~~G~~~a~~L~~~~g~--~V~vid~~~~~~~~--~~~~g~--~~~-~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGM-GRIGTGAYDELRARYGK--ISLGIEIREEAAQQ--HRSEGR--NVI-SGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECC-SHHHHHHHHHHHHHHCS--CEEEEESCHHHHHH--HHHTTC--CEE-ECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECC-CHHHHHHHHHHHhccCC--eEEEEECCHHHHHH--HHHCCC--CEE-EcCCCCHHHHHhccCCCCCCEEE
Confidence            468999998 99999999999887 87  89999998653222  222111  111 111122   3344  78999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHH
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~  173 (258)
                      ++.+..           ..|.    .++..+++.+|+..++..+|-.+    . .+.++..+   .+.++.-...-+.++
T Consensus       111 ~~~~~~-----------~~~~----~~~~~~~~~~~~~~ii~~~~~~~----~-~~~l~~~G---~~~vi~p~~~~a~~l  167 (183)
T 3c85_A          111 LAMPHH-----------QGNQ----TALEQLQRRNYKGQIAAIAEYPD----Q-LEGLLESG---VDAAFNIYSEAGSGF  167 (183)
T ss_dssp             ECCSSH-----------HHHH----HHHHHHHHTTCCSEEEEEESSHH----H-HHHHHHHT---CSEEEEHHHHHHHHH
T ss_pred             EeCCCh-----------HHHH----HHHHHHHHHCCCCEEEEEECCHH----H-HHHHHHcC---CCEEEchHHHHHHHH
Confidence            986411           2232    33445666678877766655332    1 23444443   345655433334455


Q ss_pred             HHHHHHHhCCCCC
Q 025075          174 NTFVAEVLGLDPR  186 (258)
Q Consensus       174 ~~~la~~l~v~~~  186 (258)
                      ...+.+.++.+..
T Consensus       168 ~~~~~~~~~~~~~  180 (183)
T 3c85_A          168 ARHVCKQLEPQFT  180 (183)
T ss_dssp             HHHHHHHHCCCCC
T ss_pred             HHHHHHhcCCccc
Confidence            5556666665543

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.03  E-value=2.4e-05  Score=73.34  Aligned_cols=102  Identities=7%  Similarity=0.103  Sum_probs=66.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVI   93 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVI   93 (258)
                      -+.++||+|||+ |.+|++++..|...|+  +|.+||+++++...  +........+.   .++++++++++   +|+||
T Consensus        12 ~~~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~~r~~~~~~~--l~~~~~~~gi~---~~~s~~e~v~~l~~aDvVi   83 (480)
T 2zyd_A           12 HMSKQQIGVVGM-AVMGRNLALNIESRGY--TVSIFNRSREKTEE--VIAENPGKKLV---PYYTVKEFVESLETPRRIL   83 (480)
T ss_dssp             ---CBSEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSHHHHHH--HHHHSTTSCEE---ECSSHHHHHHTBCSSCEEE
T ss_pred             ccCCCeEEEEcc-HHHHHHHHHHHHhCCC--eEEEEeCCHHHHHH--HHhhCCCCCeE---EeCCHHHHHhCCCCCCEEE
Confidence            345679999998 9999999999999987  89999997653222  22110001222   24567777777   99999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      ++..    ++..           ++++++.+..+. |+.+||..+|...
T Consensus        84 l~Vp----~~~~-----------v~~vl~~l~~~l~~g~iIId~s~g~~  117 (480)
T 2zyd_A           84 LMVK----AGAG-----------TDAAIDSLKPYLDKGDIIIDGGNTFF  117 (480)
T ss_dssp             ECSC----SSSH-----------HHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EECC----CHHH-----------HHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            9972    2221           344555666554 6778888888764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.02  E-value=1.2e-05  Score=69.76  Aligned_cols=65  Identities=15%  Similarity=0.258  Sum_probs=47.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||||+|||+ |.+|..++..|...|+  +|.+|| ++++...  +....    +.   ...+++++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~-~~~~~~~--~~~~g----~~---~~~~~~~~~~~~D~vi~~v   66 (295)
T 1yb4_A            2 NAMKLGFIGL-GIMGSPMAINLARAGH--QLHVTT-IGPVADE--LLSLG----AV---NVETARQVTEFADIIFIMV   66 (295)
T ss_dssp             --CEEEECCC-STTHHHHHHHHHHTTC--EEEECC-SSCCCHH--HHTTT----CB---CCSSHHHHHHTCSEEEECC
T ss_pred             CCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEEc-CHHHHHH--HHHcC----Cc---ccCCHHHHHhcCCEEEEEC
Confidence            4579999998 9999999999988887  899999 7653332  22211    11   1346678899999999986

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.02  E-value=1.2e-05  Score=70.14  Aligned_cols=65  Identities=15%  Similarity=0.175  Sum_probs=48.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||+ |.+|..++..|...|+  +|.++|+++++...  +....    +.   ...+++++++++|+||++..
T Consensus         6 m~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~g----~~---~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAIAD--VIAAG----AE---TASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHH--HHHTT----CE---ECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECc-hHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHHCC----Ce---ecCCHHHHHhCCCEEEEECC
Confidence            69999997 9999999999998887  89999987643222  22211    11   13467788999999999973

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.02  E-value=2.2e-05  Score=61.18  Aligned_cols=92  Identities=13%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+||+|||+ |.+|..++..|...|.  +|.++|+++++...  .++.     ....   ...+++++++++|+||.+.+
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~--~v~v~~r~~~~~~~~a~~~~-----~~~~---~~~~~~~~~~~~Divi~at~   89 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQY--KVTVAGRNIDHVRAFAEKYE-----YEYV---LINDIDSLIKNNDVIITATS   89 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTC--EEEEEESCHHHHHHHHHHHT-----CEEE---ECSCHHHHHHTCSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCHHHHHHHHHHhC-----CceE---eecCHHHHhcCCCEEEEeCC
Confidence            359999998 9999999998888775  59999998653322  1221     1221   13567788999999999876


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .+. +-...                  ....|..+++.+++|.|
T Consensus        90 ~~~-~~~~~------------------~~l~~g~~vid~~~p~~  114 (144)
T 3oj0_A           90 SKT-PIVEE------------------RSLMPGKLFIDLGNPPN  114 (144)
T ss_dssp             CSS-CSBCG------------------GGCCTTCEEEECCSSCS
T ss_pred             CCC-cEeeH------------------HHcCCCCEEEEccCCcc
Confidence            542 11110                  11235788999999988

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.00  E-value=5.9e-05  Score=68.68  Aligned_cols=96  Identities=16%  Similarity=0.117  Sum_probs=59.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEe---CCCChhHHHHHhcCC------CCCe--EE--E-E-eCCCchH
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYD---VVNTPGVTADISHMD------TGAV--VR--G-F-LGQPQLE   83 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D---~~~~~g~~~dl~~~~------~~~~--v~--~-~-~~~~d~~   83 (258)
                      +|||+|||+ |.+|..++..|+. .|+  +|.+||   ++++..... +....      ....  ..  . + ..++|++
T Consensus         2 ~mkI~ViGa-G~~G~~~a~~La~~~G~--~V~~~~~~~r~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (404)
T 3c7a_A            2 TVKVCVCGG-GNGAHTLSGLAASRDGV--EVRVLTLFADEAERWTKA-LGADELTVIVNEKDGTQTEVKSRPKVITKDPE   77 (404)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTSTTE--EEEEECCSTTHHHHHHHH-HTTSCEEEEEECSSSCEEEEEECCSEEESCHH
T ss_pred             CceEEEECC-CHHHHHHHHHHHhCCCC--EEEEEeCCCCcHHHHHHH-HhhccceeeeecCCCccceeeccceEEeCCHH
Confidence            479999998 9999999999987 476  899999   433211110 11110      0000  11  0 1 1245777


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEE
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL  135 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv  135 (258)
                      ++++++|+||++....    .            .+++++.+..+. |+.+|+.
T Consensus        78 ~a~~~aD~Vilav~~~----~------------~~~v~~~l~~~l~~~~ivv~  114 (404)
T 3c7a_A           78 IAISGADVVILTVPAF----A------------HEGYFQAMAPYVQDSALIVG  114 (404)
T ss_dssp             HHHTTCSEEEECSCGG----G------------HHHHHHHHTTTCCTTCEEEE
T ss_pred             HHhCCCCEEEEeCchH----H------------HHHHHHHHHhhCCCCcEEEE
Confidence            8899999999997321    1            245666676664 5665544

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=98.00  E-value=0.00014  Score=61.56  Aligned_cols=152  Identities=14%  Similarity=0.199  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|+++|++.+..  ...++....  ..+..+.. -+|   +++.++      
T Consensus         9 ~k~vlITGas~giG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            9 NKVGIVTGSGGGIGQAYAEALAREGA--AVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEF   84 (253)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            34789999999999999999999997  899999976422  122232211  12222211 112   222333      


Q ss_pred             -CCCEEEEcCCCCC--CC----CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 025075           88 -GMDLVIIPAGVPR--KP----GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        88 -~aDiVIi~ag~~~--~~----g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~  153 (258)
                       ..|++|.+||...  ..    ..+.   .+.+..|+.-    .+.+.+.+.+.. .+.|+++|....            
T Consensus        85 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~------------  151 (253)
T 3qiv_A           85 GGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRG-GGAIVNQSSTAA------------  151 (253)
T ss_dssp             SCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEECC---------------
T ss_pred             CCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CCEEEEECCccc------------
Confidence             8999999998731  11    1121   2345666655    566666666554 567777765433            


Q ss_pred             hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                         +++...++.+......+-+.++++++  +..|++.++
T Consensus       152 ---~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  186 (253)
T 3qiv_A          152 ---WLYSNYYGLAKVGINGLTQQLSRELG--GRNIRINAI  186 (253)
T ss_dssp             -----------CCHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             ---cCCCchhHHHHHHHHHHHHHHHHHHh--hcCeEEEEE
Confidence               12233455654444556777888874  345554433

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=97.98  E-value=2.9e-05  Score=70.97  Aligned_cols=115  Identities=11%  Similarity=0.068  Sum_probs=71.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHhcC-------CCCCeEEEEeC----CC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHM-------DTGAVVRGFLG----QP   80 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~~~-------~~~~~v~~~~~----~~   80 (258)
                      +.++++|.|+||+|++|++++..|...|.  +|++++++......     ..+...       .....+..+.+    ..
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~  143 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMD  143 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEE--EEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---C
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCC--EEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcc
Confidence            45567999999999999999999977775  89999987752111     011100       00012222211    12


Q ss_pred             chHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           81 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++. ++.++|+||.+|+..... ....+.+..|+.....+++.+.+ . ...++.+|
T Consensus       144 ~l~-~~~~~d~Vih~A~~~~~~-~~~~~~~~~Nv~g~~~l~~aa~~-~-~~~~v~~S  196 (427)
T 4f6c_A          144 DVV-LPENMDTIIHAGARTDHF-GDDDEFEKVNVQGTVDVIRLAQQ-H-HARLIYVS  196 (427)
T ss_dssp             CCC-CSSCCSEEEECCCCC--------CHHHHHHHHHHHHHHHHHH-T-TCEEEEEE
T ss_pred             cCC-CcCCCCEEEECCcccCCC-CCHHHHHHHHHHHHHHHHHHHHh-c-CCcEEEEC
Confidence            222 577999999999865322 33456778899999999999988 3 34455443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.97  E-value=3.2e-05  Score=68.06  Aligned_cols=65  Identities=11%  Similarity=0.091  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++++...  +....    +..   ..++.++++++|+||++.
T Consensus        30 ~~~I~iIG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~g----~~~---~~~~~~~~~~~DvVi~av   94 (316)
T 2uyy_A           30 DKKIGFLGL-GLMGSGIVSNLLKMGH--TVTVWNRTAEKCDL--FIQEG----ARL---GRTPAEVVSTCDITFACV   94 (316)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSGGGGHH--HHHTT----CEE---CSCHHHHHHHCSEEEECC
T ss_pred             CCeEEEEcc-cHHHHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHHcC----CEE---cCCHHHHHhcCCEEEEeC
Confidence            479999998 9999999999998887  89999998753332  22211    111   245678889999999986

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.97  E-value=0.00012  Score=55.74  Aligned_cols=70  Identities=24%  Similarity=0.296  Sum_probs=45.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCch---H-hhhCCCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---E-NALTGMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d~---~-~a~~~aDiVIi   94 (258)
                      .|||+|+|+ |.+|..++..|...|.  +++++|++++....  +.... ....  +.+ ..+.   . ..++++|+||+
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~--~v~~~d~~~~~~~~--~~~~~-~~~~--~~~d~~~~~~l~~~~~~~~d~vi~   75 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICKK--ASAEI-DALV--INGDCTKIKTLEDAGIEDADMYIA   75 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHHC-SSEE--EESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHH--HHHhc-CcEE--EEcCCCCHHHHHHcCcccCCEEEE
Confidence            479999998 9999999999998886  89999987643221  22110 1111  111 1121   2 22689999999


Q ss_pred             cCC
Q 025075           95 PAG   97 (258)
Q Consensus        95 ~ag   97 (258)
                      +.+
T Consensus        76 ~~~   78 (140)
T 1lss_A           76 VTG   78 (140)
T ss_dssp             CCS
T ss_pred             eeC
Confidence            963

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.96  E-value=2.3e-05  Score=73.32  Aligned_cols=101  Identities=10%  Similarity=0.078  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCC---CCEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVI   93 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~---aDiVI   93 (258)
                      ++.++||+|||+ |.+|.+++..|...|+  +|.+||+++++...  +........+.   .++++++.+++   +|+||
T Consensus         2 ~m~~~~IgvIG~-G~mG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~~~~~~~gi~---~~~s~~e~v~~l~~aDvVi   73 (474)
T 2iz1_A            2 HMAQANFGVVGM-AVMGKNLALNVESRGY--TVAIYNRTTSKTEE--VFKEHQDKNLV---FTKTLEEFVGSLEKPRRIM   73 (474)
T ss_dssp             -CTTBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHH--HHHHTTTSCEE---ECSSHHHHHHTBCSSCEEE
T ss_pred             CCCCCcEEEEee-HHHHHHHHHHHHhCCC--EEEEEcCCHHHHHH--HHHhCcCCCeE---EeCCHHHHHhhccCCCEEE
Confidence            344579999998 9999999999999887  89999987643222  21110001222   23567777766   99999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                      ++..    ++.           .++++++.+.... |+.+||..+|..
T Consensus        74 lavp----~~~-----------~v~~vl~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           74 LMVQ----AGA-----------ATDATIKSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             ECCC----TTH-----------HHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             EEcc----Cch-----------HHHHHHHHHHhhCCCCCEEEECCCCC
Confidence            9862    211           1234445565554 567777777765

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.96  E-value=3.4e-05  Score=67.65  Aligned_cols=77  Identities=18%  Similarity=0.245  Sum_probs=56.2

Q ss_pred             CCeEEEEc-CCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILG-AAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIG-a~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ++||+||| + |.+|.+++..|...|+  +|.++|+++..                      +..+++++||+||++.. 
T Consensus        21 ~~~I~iIGg~-G~mG~~la~~l~~~G~--~V~~~~~~~~~----------------------~~~~~~~~aDvVilavp-   74 (298)
T 2pv7_A           21 IHKIVIVGGY-GKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSVP-   74 (298)
T ss_dssp             CCCEEEETTT-SHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECSC-
T ss_pred             CCEEEEEcCC-CHHHHHHHHHHHhCCC--eEEEEECCccc----------------------CHHHHhcCCCEEEEeCC-
Confidence            35899999 7 9999999999999887  89999986521                      34578899999999972 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t  137 (258)
                         +..            +.++++.+..+. |+++|+.++
T Consensus        75 ---~~~------------~~~vl~~l~~~l~~~~iv~~~~   99 (298)
T 2pv7_A           75 ---INL------------TLETIERLKPYLTENMLLADLT   99 (298)
T ss_dssp             ---GGG------------HHHHHHHHGGGCCTTSEEEECC
T ss_pred             ---HHH------------HHHHHHHHHhhcCCCcEEEECC
Confidence               111            345556666553 566665543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.96  E-value=1.8e-05  Score=67.64  Aligned_cols=67  Identities=18%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .||||+|||+ |.+|..++..|...|.  +|.++|+++++...  +.... .  +.   ...+++++++++|+||++.
T Consensus         2 ~~m~i~iiG~-G~mG~~~a~~l~~~g~--~v~~~~~~~~~~~~--~~~~~-g--~~---~~~~~~~~~~~~D~Vi~~v   68 (259)
T 2ahr_A            2 NAMKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSKE--IAEQL-A--LP---YAMSHQDLIDQVDLVILGI   68 (259)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHHH--HHHHH-T--CC---BCSSHHHHHHTCSEEEECS
T ss_pred             CccEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCHHHHHH--HHHHc-C--CE---eeCCHHHHHhcCCEEEEEe
Confidence            4579999997 9999999999988875  89999997643222  21110 0  11   1346678889999999996

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.96  E-value=3.1e-05  Score=68.64  Aligned_cols=67  Identities=19%  Similarity=0.203  Sum_probs=48.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCC---h--hHHHHHhcCCCCCeEEEEeCCC-chHhhhCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---P--GVTADISHMDTGAVVRGFLGQP-QLENALTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~---~--g~~~dl~~~~~~~~v~~~~~~~-d~~~a~~~aDi   91 (258)
                      ++|||+|||+ |.+|..++..|...| +  +|.+||+++.   +  .....+....    .     .+ ++.+++++||+
T Consensus        23 M~m~IgvIG~-G~mG~~lA~~L~~~G~~--~V~~~dr~~~~~~~~~~~~~~~~~~g----~-----~~~s~~e~~~~aDv   90 (317)
T 4ezb_A           23 MMTTIAFIGF-GEAAQSIAGGLGGRNAA--RLAAYDLRFNDPAASGALRARAAELG----V-----EPLDDVAGIACADV   90 (317)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHTTTCS--EEEEECGGGGCTTTHHHHHHHHHHTT----C-----EEESSGGGGGGCSE
T ss_pred             cCCeEEEECc-cHHHHHHHHHHHHcCCC--eEEEEeCCCccccchHHHHHHHHHCC----C-----CCCCHHHHHhcCCE
Confidence            4579999998 999999999999988 6  9999999862   1  1122222211    1     12 45688999999


Q ss_pred             EEEcCC
Q 025075           92 VIIPAG   97 (258)
Q Consensus        92 VIi~ag   97 (258)
                      ||++..
T Consensus        91 Vi~avp   96 (317)
T 4ezb_A           91 VLSLVV   96 (317)
T ss_dssp             EEECCC
T ss_pred             EEEecC
Confidence            999973

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.95  E-value=9.2e-06  Score=71.13  Aligned_cols=77  Identities=17%  Similarity=0.132  Sum_probs=51.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-C-----hhHHH-HHhcCCCCCeEEEEe--CCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTA-DISHMDTGAVVRGFL--GQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~-----~g~~~-dl~~~~~~~~v~~~~--~~~d~~~a~~~a   89 (258)
                      +||+|.|+||+|++|++++..|...|.  +|++++++. .     +...+ ++.....  .+....  ...++.++++++
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~l~~~~~~~v--~~v~~D~~d~~~l~~a~~~~   78 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSH--PTFIYARPLTPDSTPSSVQLREEFRSMGV--TIIEGEMEEHEKMVSVLKQV   78 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECCCCTTCCHHHHHHHHHHHHTTC--EEEECCTTCHHHHHHHHTTC
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCC--cEEEEECCcccccChHHHHHHHHhhcCCc--EEEEecCCCHHHHHHHHcCC
Confidence            467899999999999999999998886  899999875 2     11111 1222111  111111  112467789999


Q ss_pred             CEEEEcCCCC
Q 025075           90 DLVIIPAGVP   99 (258)
Q Consensus        90 DiVIi~ag~~   99 (258)
                      |+||++++..
T Consensus        79 d~vi~~a~~~   88 (321)
T 3c1o_A           79 DIVISALPFP   88 (321)
T ss_dssp             SEEEECCCGG
T ss_pred             CEEEECCCcc
Confidence            9999998743

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.94  E-value=3e-05  Score=67.79  Aligned_cols=122  Identities=13%  Similarity=0.133  Sum_probs=71.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-----C-CCcEEEEEeCCCChhHHHHHhc-CCC---C--CeEEE--EeCCCchH
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKIN-----P-LVSVLHLYDVVNTPGVTADISH-MDT---G--AVVRG--FLGQPQLE   83 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~-----~-~~~ei~L~D~~~~~g~~~dl~~-~~~---~--~~v~~--~~~~~d~~   83 (258)
                      .++|||+|||+ |.+|..++..|...     | +  +|.++|+ +++  ...+.. ...   .  .....  ...+++. 
T Consensus         6 ~~~m~I~iiG~-G~mG~~~a~~L~~~~~~~~g~~--~V~~~~r-~~~--~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-   78 (317)
T 2qyt_A            6 QQPIKIAVFGL-GGVGGYYGAMLALRAAATDGLL--EVSWIAR-GAH--LEAIRAAGGLRVVTPSRDFLARPTCVTDNP-   78 (317)
T ss_dssp             -CCEEEEEECC-SHHHHHHHHHHHHHHHHTTSSE--EEEEECC-HHH--HHHHHHHTSEEEECSSCEEEECCSEEESCH-
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCccccCCCC--CEEEEEc-HHH--HHHHHhcCCeEEEeCCCCeEEecceEecCc-
Confidence            34579999998 99999999999887     7 6  8999998 432  222222 110   0  00000  0011333 


Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ++++++|+||++..    +..            +.++++.+..+ .|+.+|+.++|..+    . .+.+.+  .+|++++
T Consensus        79 ~~~~~~D~vil~vk----~~~------------~~~v~~~i~~~l~~~~~iv~~~nG~~----~-~~~l~~--~l~~~~v  135 (317)
T 2qyt_A           79 AEVGTVDYILFCTK----DYD------------MERGVAEIRPMIGQNTKILPLLNGAD----I-AERMRT--YLPDTVV  135 (317)
T ss_dssp             HHHCCEEEEEECCS----SSC------------HHHHHHHHGGGEEEEEEEEECSCSSS----H-HHHHTT--TSCTTTB
T ss_pred             cccCCCCEEEEecC----ccc------------HHHHHHHHHhhcCCCCEEEEccCCCC----c-HHHHHH--HCCCCcE
Confidence            56889999999973    221            23445556554 35677777889877    2 123332  2566555


Q ss_pred             E-EEeecc
Q 025075          163 L-GVTMLD  169 (258)
Q Consensus       163 i-G~t~ld  169 (258)
                      + |++..+
T Consensus       136 ~~g~~~~~  143 (317)
T 2qyt_A          136 WKGCVYIS  143 (317)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEEEE
Confidence            4 554444

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.94  E-value=3.4e-05  Score=66.65  Aligned_cols=92  Identities=11%  Similarity=0.009  Sum_probs=59.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      ||||+|||+ |.+|..++..|.. |+  +|.++|+++++...  +.....  ..  .   + +.++++++|+||++...+
T Consensus         1 M~~i~iiG~-G~~G~~~a~~l~~-g~--~V~~~~~~~~~~~~--~~~~g~--~~--~---~-~~~~~~~~D~vi~~v~~~   66 (289)
T 2cvz_A            1 MEKVAFIGL-GAMGYPMAGHLAR-RF--PTLVWNRTFEKALR--HQEEFG--SE--A---V-PLERVAEARVIFTCLPTT   66 (289)
T ss_dssp             -CCEEEECC-STTHHHHHHHHHT-TS--CEEEECSSTHHHHH--HHHHHC--CE--E---C-CGGGGGGCSEEEECCSSH
T ss_pred             CCeEEEEcc-cHHHHHHHHHHhC-CC--eEEEEeCCHHHHHH--HHHCCC--cc--c---C-HHHHHhCCCEEEEeCCCh
Confidence            469999998 9999999999988 86  79999998753222  111111  11  1   1 356788999999996321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV  140 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPv  140 (258)
                                     ..++++++.+.+. .|+.+++..+|..
T Consensus        67 ---------------~~~~~v~~~l~~~l~~~~~vv~~s~~~   93 (289)
T 2cvz_A           67 ---------------REVYEVAEALYPYLREGTYWVDATSGE   93 (289)
T ss_dssp             ---------------HHHHHHHHHHTTTCCTTEEEEECSCCC
T ss_pred             ---------------HHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence                           0123344555544 3566777777754

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.94  E-value=7.8e-06  Score=73.25  Aligned_cols=115  Identities=10%  Similarity=-0.026  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCC---CCCeEEEEeC-C---CchHhhhCC--
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMD---TGAVVRGFLG-Q---PQLENALTG--   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~---~~~~v~~~~~-~---~d~~~a~~~--   88 (258)
                      ++|.|+||+|++|++++..|...|.  +|+++|++....   ...++....   ....+..+.+ -   .++.+++++  
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  102 (375)
T 1t2a_A           25 NVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVK  102 (375)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcC
Confidence            6899999999999999999999886  899999875321   111111000   0112222221 1   123455664  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCC--cEEEEec
Q 025075           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPN--ATVNLIS  137 (258)
Q Consensus        89 aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~--a~viv~t  137 (258)
                      .|+||.+||.....  ..+..+.+..|+.....+++.+.+...+  ..||.+|
T Consensus       103 ~d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~S  155 (375)
T 1t2a_A          103 PTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQAS  155 (375)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEE
T ss_pred             CCEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence            59999999854211  0123445677888888899888876541  4555554

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.94  E-value=1.4e-05  Score=69.40  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=50.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------ChhHH-HHHhcCCCCCeEEEEe--CCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------TPGVT-ADISHMDTGAVVRGFL--GQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-------~~g~~-~dl~~~~~~~~v~~~~--~~~d~~~a~~~a   89 (258)
                      |+||.|+||+|++|++++..|...|.  +|+.++++.       .+... .++.....  .+....  ...++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v--~~v~~D~~d~~~l~~~~~~~   77 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN--PTYALVRKTITAANPETKEELIDNYQSLGV--ILLEGDINDHETLVKAIKQV   77 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC--CEEEEECCSCCSSCHHHHHHHHHHHHHTTC--EEEECCTTCHHHHHHHHTTC
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC--cEEEEECCCcccCChHHHHHHHHHHHhCCC--EEEEeCCCCHHHHHHHHhCC
Confidence            56899999999999999999988886  789999876       21111 12222111  111111  112456788999


Q ss_pred             CEEEEcCCCC
Q 025075           90 DLVIIPAGVP   99 (258)
Q Consensus        90 DiVIi~ag~~   99 (258)
                      |+||.+++..
T Consensus        78 d~vi~~a~~~   87 (307)
T 2gas_A           78 DIVICAAGRL   87 (307)
T ss_dssp             SEEEECSSSS
T ss_pred             CEEEECCccc
Confidence            9999998753

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.93  E-value=2.3e-05  Score=68.28  Aligned_cols=65  Identities=12%  Similarity=0.332  Sum_probs=48.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +|||+|||+ |.+|..++..|...|+  +|.++|+++++..  .+....    +..   ..+++++++++|+||++.
T Consensus         4 ~~~i~iiG~-G~~G~~~a~~l~~~g~--~V~~~~~~~~~~~--~~~~~g----~~~---~~~~~~~~~~~D~vi~~v   68 (301)
T 3cky_A            4 SIKIGFIGL-GAMGKPMAINLLKEGV--TVYAFDLMEANVA--AVVAQG----AQA---CENNQKVAAASDIIFTSL   68 (301)
T ss_dssp             CCEEEEECC-CTTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHCC----Cee---cCCHHHHHhCCCEEEEEC
Confidence            479999998 9999999999988887  8999998764322  232221    221   246678889999999986

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.93  E-value=4.5e-06  Score=73.06  Aligned_cols=110  Identities=14%  Similarity=0.118  Sum_probs=69.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVIi~ag~   98 (258)
                      +|||+|||+ |.+|..++..|...|.  +|.++|++++.-   ++............   .+..+++ +++|+||++.  
T Consensus         2 ~mkI~iiGa-Ga~G~~~a~~L~~~g~--~V~~~~r~~~~~---~~~~~~g~~~~~~~---~~~~~~~~~~~D~vilav--   70 (294)
T 3g17_A            2 SLSVAIIGP-GAVGTTIAYELQQSLP--HTTLIGRHAKTI---TYYTVPHAPAQDIV---VKGYEDVTNTFDVIIIAV--   70 (294)
T ss_dssp             -CCEEEECC-SHHHHHHHHHHHHHCT--TCEEEESSCEEE---EEESSTTSCCEEEE---EEEGGGCCSCEEEEEECS--
T ss_pred             CcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeccCcE---EEEecCCeecccee---cCchHhcCCCCCEEEEeC--
Confidence            479999998 9999999999998886  899999976311   11111100111111   1223555 8999999986  


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                        |+..            +.++++.+..+ .|+..|+.+.|-++...         .  +|.+++++-
T Consensus        71 --k~~~------------~~~~l~~l~~~l~~~~~iv~~~nGi~~~~---------~--~~~~~v~~g  113 (294)
T 3g17_A           71 --KTHQ------------LDAVIPHLTYLAHEDTLIILAQNGYGQLE---------H--IPFKNVCQA  113 (294)
T ss_dssp             --CGGG------------HHHHGGGHHHHEEEEEEEEECCSSCCCGG---------G--CCCSCEEEC
T ss_pred             --CccC------------HHHHHHHHHHhhCCCCEEEEeccCcccHh---------h--CCCCcEEEE
Confidence              2221            23344444444 36778888999998421         1  778888753

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=97.93  E-value=4.7e-06  Score=74.85  Aligned_cols=115  Identities=15%  Similarity=-0.004  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-----CCC-eEEEEeC-CC---chHhhhCC--
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-----TGA-VVRGFLG-QP---QLENALTG--   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-----~~~-~v~~~~~-~~---d~~~a~~~--   88 (258)
                      ++|.|+||+|++|++++..|...|.  +|+++|++........+.+..     ... .+..+.+ -.   ++.+++++  
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~  106 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIK  106 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCC--EEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcC
Confidence            5899999999999999999999886  899999875321000011110     000 2222221 11   23455665  


Q ss_pred             CCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhC----CCcEEEEec
Q 025075           89 MDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLIS  137 (258)
Q Consensus        89 aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~----p~a~viv~t  137 (258)
                      .|+||.+|+.....  ..+..+.+..|+.....+++.+.+..    +.+.||.+|
T Consensus       107 ~d~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~S  161 (381)
T 1n7h_A          107 PDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAG  161 (381)
T ss_dssp             CSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEE
T ss_pred             CCEEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeC
Confidence            59999999854211  01233456778877888888777654    234666554

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.93  E-value=0.00013  Score=61.36  Aligned_cols=116  Identities=15%  Similarity=0.126  Sum_probs=68.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-----   87 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++...   ..+..+.. -.|   +.+.++     
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKA   79 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhcc---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998754211  1222211   12222211 112   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 --GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                        ..|+||.++|......   .+   -...+..|+.    ..+.+.+.+.+....+.|+++|..
T Consensus        80 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~  143 (251)
T 1zk4_A           80 FGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSI  143 (251)
T ss_dssp             HSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCG
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence              5899999998653211   12   1234566665    455566666554433667777653

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=97.92  E-value=2.5e-05  Score=68.75  Aligned_cols=113  Identities=18%  Similarity=0.169  Sum_probs=69.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeC--C--CchHhhhC--CCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG--Q--PQLENALT--GMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~--~aDiV   92 (258)
                      |||.|+||+|++|++++..|+..|.  +|+++|+...  .....++.... ...+..+.+  +  .++.++++  ++|+|
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~D~v   77 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHH-TSCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecCCCcchhHHHHHHhhc-CCcceEEEccCCCHHHHHHHhhccCCCEE
Confidence            5899999999999999999999887  8999986432  11111121100 001111111  1  12344555  59999


Q ss_pred             EEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        93 Ii~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      |++||.....  .....+.+..|+.....+++.+.+.+.. .+|.+|
T Consensus        78 ih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~S  123 (338)
T 1udb_A           78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVK-NFIFSS  123 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EECCccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEc
Confidence            9999853211  0123456778999999999988877543 444443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.91  E-value=9.2e-05  Score=69.43  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-CCCeEEEEeCCCchHhhhC---CCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALT---GMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~~~d~~~a~~---~aDiVI   93 (258)
                      +.+|||+|||+ |.+|.+++..|...|+  +|.+||+++++...  +.... ....+.   .+.+++++++   ++|+||
T Consensus         2 ~~~~kIgiIGl-G~MG~~lA~~L~~~G~--~V~v~dr~~~~~~~--l~~~g~~g~~i~---~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            2 NAQADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVDD--FLANEAKGTKVV---GAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             -CCBSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHHH--HHHTTTTTSSCE---ECSSHHHHHHTBCSSCEEE
T ss_pred             CCCCEEEEECh-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHhcccCCCcee---ccCCHHHHHhhccCCCEEE
Confidence            35679999998 9999999999999998  89999998753322  22111 111222   1345666665   699999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                      ++..    +++           .++++++.+..+- |+.+||..+|..
T Consensus        74 l~Vp----~~~-----------~v~~vl~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           74 LLVK----AGQ-----------AVDDFIEKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             ECSC----SSH-----------HHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred             EecC----ChH-----------HHHHHHHHHHHhcCCCCEEEEcCCCC
Confidence            9863    221           1344445565554 667777777654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.91  E-value=2.2e-05  Score=67.05  Aligned_cols=92  Identities=15%  Similarity=0.147  Sum_probs=59.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+|||+ |.+|..++..|...|. .+|.+||+++++...  +... +  .+...   .++.+++ ++|+||++.. + 
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~-~~v~~~~r~~~~~~~--~~~~-~--g~~~~---~~~~~~~-~~D~vi~~v~-~-   67 (263)
T 1yqg_A            1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEKRER--LEKE-L--GVETS---ATLPELH-SDDVLILAVK-P-   67 (263)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHHHHH--HHHH-T--CCEEE---SSCCCCC-TTSEEEECSC-H-
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCC-CeEEEECCCHHHHHH--HHHh-c--CCEEe---CCHHHHh-cCCEEEEEeC-c-
Confidence            58999998 9999999999988772 289999997643222  2211 1  12211   2345677 9999999862 1 


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                                    ..+.++++.+.. . +.+++.++|.+.
T Consensus        68 --------------~~~~~v~~~l~~-~-~~ivv~~~~g~~   92 (263)
T 1yqg_A           68 --------------QDMEAACKNIRT-N-GALVLSVAAGLS   92 (263)
T ss_dssp             --------------HHHHHHHTTCCC-T-TCEEEECCTTCC
T ss_pred             --------------hhHHHHHHHhcc-C-CCEEEEecCCCC
Confidence                          113445555544 3 667776777776

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.89  E-value=1.7e-05  Score=68.99  Aligned_cols=94  Identities=16%  Similarity=0.058  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHH---HHhcCCCCCeEEEEe----CCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTA---DISHMDTGAVVRGFL----GQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~---dl~~~~~~~~v~~~~----~~~d~~~a~~~a   89 (258)
                      +|||.|+||+|++|++++..|...|.  +|++++++..   .....   ++....    +..+.    ...++.++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~~~~~~~~~~~~----~~~~~~D~~d~~~l~~~~~~~   77 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQLG----AKLIEASLDDHQRLVDALKQV   77 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTTT----CEEECCCSSCHHHHHHHHTTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--cEEEEECCCcccchhHHHHHHHHHhCC----eEEEeCCCCCHHHHHHHHhCC
Confidence            57899999999999999999998886  8999998752   11111   222211    11111    112466789999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~  128 (258)
                      |+||.+++.....         .|+...+.+++.+.+.+
T Consensus        78 d~vi~~a~~~~~~---------~~~~~~~~l~~aa~~~g  107 (313)
T 1qyd_A           78 DVVISALAGGVLS---------HHILEQLKLVEAIKEAG  107 (313)
T ss_dssp             SEEEECCCCSSSS---------TTTTTHHHHHHHHHHSC
T ss_pred             CEEEECCccccch---------hhHHHHHHHHHHHHhcC
Confidence            9999998754211         13333456667776665

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.89  E-value=2.9e-05  Score=59.48  Aligned_cols=100  Identities=10%  Similarity=0.054  Sum_probs=58.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhh-hCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVIi~   95 (258)
                      +++|.|+|+ |.+|..++..|...|.  +++++|.++...  ..+....  .... .....+   +.++ ++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~~--~~~~-~~d~~~~~~l~~~~~~~~d~vi~~   77 (144)
T 2hmt_A            6 NKQFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEKV--NAYASYA--THAV-IANATEENELLSLGIRNFEYVIVA   77 (144)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHHH--HTTTTTC--SEEE-ECCTTCHHHHHTTTGGGCSEEEEC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhC--CEEE-EeCCCCHHHHHhcCCCCCCEEEEC
Confidence            457999998 9999999999998886  799999875321  1122111  1111 111122   2222 6789999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ++.+          ...|..    ++..+++.+|+-++...+||..
T Consensus        78 ~~~~----------~~~~~~----~~~~~~~~~~~~ii~~~~~~~~  109 (144)
T 2hmt_A           78 IGAN----------IQASTL----TTLLLKELDIPNIWVKAQNYYH  109 (144)
T ss_dssp             CCSC----------HHHHHH----HHHHHHHTTCSEEEEECCSHHH
T ss_pred             CCCc----------hHHHHH----HHHHHHHcCCCeEEEEeCCHHH
Confidence            7532          122332    3344455667644444556544

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=97.89  E-value=0.00011  Score=62.42  Aligned_cols=114  Identities=18%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C--CchHhhhC-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q--PQLENALT-------G   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~--~d~~~a~~-------~   88 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.......++....  ..+..+..  +  .+++++++       +
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   79 (255)
T 2q2v_A            4 GKTALVTGSTSGIGLGIAQVLARAGA--NIVLNGFGDPAPALAEIARHG--VKAVHHPADLSDVAQIEALFALAEREFGG   79 (255)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHHHTTS--CCEEEECCCTTSHHHHHHHHHHHHHHHSS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            45899999999999999999999987  899999877532223333211  12222111  1  12334444       8


Q ss_pred             CCEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|.+||......   .+   -...+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  138 (255)
T 2q2v_A           80 VDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARN-WGRIINIAS  138 (255)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcC
Confidence            999999998753211   11   1234556665    6666777776543 456776664

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.88  E-value=0.00013  Score=56.28  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=46.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCch---Hh-hhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---EN-ALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~---~~-a~~~aDiVIi~   95 (258)
                      +++|.|+|+ |.+|++++..|...|.  +++++|.+++...  .+.+...  .+. ....++.   .+ .++++|+||++
T Consensus         6 ~~~v~I~G~-G~iG~~la~~L~~~g~--~V~~id~~~~~~~--~~~~~~~--~~~-~gd~~~~~~l~~~~~~~~d~vi~~   77 (141)
T 3llv_A            6 RYEYIVIGS-EAAGVGLVRELTAAGK--KVLAVDKSKEKIE--LLEDEGF--DAV-IADPTDESFYRSLDLEGVSAVLIT   77 (141)
T ss_dssp             CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHHH--HHHHTTC--EEE-ECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEECCHHHHH--HHHHCCC--cEE-ECCCCCHHHHHhCCcccCCEEEEe
Confidence            468999998 9999999999999887  8999999865322  2222111  111 1111222   12 14689999998


Q ss_pred             CC
Q 025075           96 AG   97 (258)
Q Consensus        96 ag   97 (258)
                      .+
T Consensus        78 ~~   79 (141)
T 3llv_A           78 GS   79 (141)
T ss_dssp             CS
T ss_pred             cC
Confidence            64

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=97.86  E-value=0.00014  Score=64.98  Aligned_cols=104  Identities=16%  Similarity=0.146  Sum_probs=67.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-----CchHhhhCCCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVIi   94 (258)
                      +|+|.|+||+|++|++++..|...|.  +|++++++.......++....   .+..+.+.     .++.++++++|+||+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~~l~~~~---~v~~v~~D~l~d~~~l~~~~~~~d~Vi~   79 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAFI   79 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCChhhHHHHhhcC---CcEEEECCccCCHHHHHHHHhcCCEEEE
Confidence            46899999999999999999988886  899999876533222333211   12222211     135677899999998


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP  139 (258)
                      +++...   .      ..|... +.+++.+.+.+ .. .+|.+|..
T Consensus        80 ~a~~~~---~------~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~  114 (352)
T 1xgk_A           80 NTTSQA---G------DEIAIG-KDLADAAKRAGTIQ-HYIYSSMP  114 (352)
T ss_dssp             CCCSTT---S------CHHHHH-HHHHHHHHHHSCCS-EEEEEECC
T ss_pred             cCCCCC---c------HHHHHH-HHHHHHHHHcCCcc-EEEEeCCc
Confidence            875321   1      124444 77777777765 33 55555544

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.86  E-value=6.8e-05  Score=62.87  Aligned_cols=117  Identities=18%  Similarity=0.186  Sum_probs=67.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhhC---CCCEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENALT---GMDLV   92 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~---~aDiV   92 (258)
                      .+.++|.|+||+|++|.+++..|+..|.  +|+++|++......  +..............+  .+++++++   ..|+|
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~v   80 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVS--LAKECPGIEPVCVDLGDWDATEKALGGIGPVDLL   80 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEE
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEE
Confidence            3456899999999999999999999987  89999987542211  1110011111111111  12334444   47999


Q ss_pred             EEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |.+||......   .+.   .+.+..|+.-.    +.+.+.+.+....+.||++|.
T Consensus        81 i~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS  136 (244)
T 1cyd_A           81 VNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSS  136 (244)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             EECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcc
Confidence            99998643211   111   23455566554    444444444443566776765

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.86  E-value=4.2e-05  Score=68.64  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC----CCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT----GMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aDiVIi~   95 (258)
                      .+||+|||+ |.+|.+++..|...|+  +|.+||++++....  ......    ..   ..+++++++    ++|+||++
T Consensus         8 ~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~~--a~~~G~----~~---~~~~~e~~~~a~~~aDlVila   75 (341)
T 3ktd_A            8 SRPVCILGL-GLIGGSLLRDLHAANH--SVFGYNRSRSGAKS--AVDEGF----DV---SADLEATLQRAAAEDALIVLA   75 (341)
T ss_dssp             SSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECSCHHHHHH--HHHTTC----CE---ESCHHHHHHHHHHTTCEEEEC
T ss_pred             CCEEEEEee-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHcCC----ee---eCCHHHHHHhcccCCCEEEEe
Confidence            469999997 9999999999999886  89999987642211  111111    11   235555554    57999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..                ...+.++++.+..+.|+++|+.++
T Consensus        76 vP----------------~~~~~~vl~~l~~~~~~~iv~Dv~  101 (341)
T 3ktd_A           76 VP----------------MTAIDSLLDAVHTHAPNNGFTDVV  101 (341)
T ss_dssp             SC----------------HHHHHHHHHHHHHHCTTCCEEECC
T ss_pred             CC----------------HHHHHHHHHHHHccCCCCEEEEcC
Confidence            62                112344445555566777766554

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.85  E-value=8.3e-05  Score=62.68  Aligned_cols=115  Identities=17%  Similarity=0.210  Sum_probs=67.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CC---chHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QP---QLENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~-----   87 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.....  .+..+.. -.   +++++++     
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   85 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISK   85 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhCC--ceEEEEcCCCCHHHHHHHHHHHHHh
Confidence            346899999999999999999999987  899999876421  1222322111  2221111 11   2333343     


Q ss_pred             --CCCEEEEcCCCCCCC--CCch---hhHHHHhHHHHHHHHH----HhhhhCCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKP--GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~--g~~r---~d~~~~n~~i~~~i~~----~i~~~~p~a~viv~tN  138 (258)
                        +.|+||.+||.....  ..+.   .+.+..|+.-...+.+    .+.+.. .+.|+++|.
T Consensus        86 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  146 (255)
T 1fmc_A           86 LGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITS  146 (255)
T ss_dssp             HSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence              899999999864321  1121   2345566655444444    444433 456666664

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=97.85  E-value=4.7e-05  Score=74.14  Aligned_cols=115  Identities=17%  Similarity=0.101  Sum_probs=72.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHH---hcCCCCCeEE-EEeCCCchHhhhC--CCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADI---SHMDTGAVVR-GFLGQPQLENALT--GMD   90 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl---~~~~~~~~v~-~~~~~~d~~~a~~--~aD   90 (258)
                      ++++|.|+||+|++|++++..|+..|.  +|+++|++...  ....++   ...... .+. ++....++.++++  ++|
T Consensus        10 ~~~~ilVTGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~v~-~v~~Dl~d~~~l~~~~~~~~~D   86 (699)
T 1z45_A           10 TSKIVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIP-FYEVDLCDRKGLEKVFKEYKID   86 (699)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCC-EEECCTTCHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCcchHHHHHHHhhccCCceE-EEEcCCCCHHHHHHHHHhCCCC
Confidence            457999999999999999999999886  89999986531  111112   111111 111 0111123445666  899


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +||.+|+.....  .....+.+..|+.....+++.+.+.... .+|.+|
T Consensus        87 ~Vih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~S  134 (699)
T 1z45_A           87 SVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVS-KFVFSS  134 (699)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEE
T ss_pred             EEEECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEC
Confidence            999999854211  0122456788999999999988877544 444443

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.85  E-value=0.0002  Score=61.55  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-------   87 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|+++|++.....  ..++........+..+.. -.|   ++++++       
T Consensus        33 k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           33 RLALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999987  8999998754211  122222111122322211 122   222332       


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCC-CcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCP-NATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p-~a~viv~tN  138 (258)
                      +.|+||.+||......   .+.   ...+..|+.-    .+.+.+.+.+... .+.|++++.
T Consensus       111 ~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS  172 (279)
T 1xg5_A          111 GVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS  172 (279)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcC
Confidence            7999999998643221   121   2345566655    6777888877653 467777664

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.84  E-value=2.7e-05  Score=66.73  Aligned_cols=96  Identities=15%  Similarity=0.153  Sum_probs=59.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ||.|+||+|++|++++..|...  |.  +|++++++......  +.....  .+..  +....++.++++++|+||++++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~~--~~~~~~--~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS--QIVAIVRNPAKAQA--LAAQGI--TVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG--GEEEEESCTTTCHH--HHHTTC--EEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc--eEEEEEcChHhhhh--hhcCCC--eEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            5899999999999999999887  65  89999987653222  111111  1111  1111245678899999999987


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~v  133 (258)
                      ...          ..|+...+.+++.+.+.+..-++
T Consensus        75 ~~~----------~~~~~~~~~l~~a~~~~~~~~~v  100 (286)
T 2zcu_A           75 SEV----------GQRAPQHRNVINAAKAAGVKFIA  100 (286)
T ss_dssp             -----------------CHHHHHHHHHHHHTCCEEE
T ss_pred             CCc----------hHHHHHHHHHHHHHHHcCCCEEE
Confidence            531          13566677788887776543333

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.84  E-value=2.5e-05  Score=68.25  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=50.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHH-HHHhcCCCCCeEEE--EeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVT-ADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~-~dl~~~~~~~~v~~--~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||.|+||+|++|++++..|...|.  +|++++++.. .... .++.....  .+..  +....++.++++++|+||.++
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~l~~~~v--~~v~~Dl~d~~~l~~a~~~~d~vi~~a   87 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGH--PTYVFTRPNSSKTTLLDEFQSLGA--IIVKGELDEHEKLVELMKKVDVVISAL   87 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC--CEEEEECTTCSCHHHHHHHHHTTC--EEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCC--cEEEEECCCCchhhHHHHhhcCCC--EEEEecCCCHHHHHHHHcCCCEEEECC
Confidence            4899999999999999999998886  8999998764 2221 12222111  1111  111124667899999999998


Q ss_pred             CC
Q 025075           97 GV   98 (258)
Q Consensus        97 g~   98 (258)
                      +.
T Consensus        88 ~~   89 (318)
T 2r6j_A           88 AF   89 (318)
T ss_dssp             CG
T ss_pred             ch
Confidence            74

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=97.83  E-value=3e-05  Score=63.23  Aligned_cols=103  Identities=15%  Similarity=0.180  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC---CCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~---~aDiVIi~a   96 (258)
                      +|||.|+||+|++|++++..|+ +|.  +|++.|++.. ....|+.+            ..+++++++   ..|+||.++
T Consensus         3 kM~vlVtGasg~iG~~~~~~l~-~g~--~V~~~~r~~~-~~~~D~~~------------~~~~~~~~~~~~~~d~vi~~a   66 (202)
T 3d7l_A            3 AMKILLIGASGTLGSAVKERLE-KKA--EVITAGRHSG-DVTVDITN------------IDSIKKMYEQVGKVDAIVSAT   66 (202)
T ss_dssp             SCEEEEETTTSHHHHHHHHHHT-TTS--EEEEEESSSS-SEECCTTC------------HHHHHHHHHHHCCEEEEEECC
T ss_pred             CcEEEEEcCCcHHHHHHHHHHH-CCC--eEEEEecCcc-ceeeecCC------------HHHHHHHHHHhCCCCEEEECC
Confidence            4689999999999999999999 886  8999998753 00011111            112233344   489999999


Q ss_pred             CCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecC
Q 025075           97 GVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISN  138 (258)
Q Consensus        97 g~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tN  138 (258)
                      |......   .+.   .+.+..|+.-...+++.+.++-. .+.++++|.
T Consensus        67 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  115 (202)
T 3d7l_A           67 GSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTG  115 (202)
T ss_dssp             CCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEEEEEEEECC
T ss_pred             CCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccCCEEEEEcc
Confidence            8643221   121   23456677777777777766522 256666654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.83  E-value=0.00015  Score=62.15  Aligned_cols=70  Identities=11%  Similarity=0.003  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d~~~a~~~aDiVIi~ag   97 (258)
                      +||||.|+|| |++|++++..|...|.  +|+.++++......  +...    .+..+.+ -.|++  ++++|+||++++
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~--~~~~----~~~~~~~D~~d~~--~~~~d~vi~~a~   72 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGW--RIIGTSRNPDQMEA--IRAS----GAEPLLWPGEEPS--LDGVTHLLISTA   72 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTC--EEEEEESCGGGHHH--HHHT----TEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCC--EEEEEEcChhhhhh--HhhC----CCeEEEecccccc--cCCCCEEEECCC
Confidence            4579999998 9999999999998887  89999987643222  2221    1222221 23443  889999999997


Q ss_pred             CC
Q 025075           98 VP   99 (258)
Q Consensus        98 ~~   99 (258)
                      ..
T Consensus        73 ~~   74 (286)
T 3ius_A           73 PD   74 (286)
T ss_dssp             CB
T ss_pred             cc
Confidence            54

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=97.83  E-value=6.8e-05  Score=63.63  Aligned_cols=118  Identities=15%  Similarity=0.119  Sum_probs=72.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--CchHhhhC------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQLENALT------   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~~~a~~------   87 (258)
                      ++++|.|+||+|++|.+++..|+. .|.  +|++.+++....  ...++..............+  .++.++++      
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   80 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEY   80 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC--eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence            346899999999999999999998 887  899999875421  12233221111111111111  12233333      


Q ss_pred             -CCCEEEEcCCCCCCCCC------chhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPGM------TRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g~------~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       +.|+||++||.......      .-...+..|+.-...+++.+.++. +.+.||++|.
T Consensus        81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS  139 (276)
T 1wma_A           81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  139 (276)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECC
Confidence             79999999987543211      113356778877777887777653 3456776664

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.81  E-value=6e-05  Score=66.38  Aligned_cols=66  Identities=21%  Similarity=0.345  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .|+||++||. |.+|+.++..|...|+  +|..||+++++..  ++.....  ..     ..++.+++++||+||.+.
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~--~v~v~dr~~~~~~--~l~~~Ga--~~-----a~s~~e~~~~~dvv~~~l   67 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSAVD--GLVAAGA--SA-----ARSARDAVQGADVVISML   67 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHTTC--EE-----CSSHHHHHTTCSEEEECC
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCC--eEEEEcCCHHHHH--HHHHcCC--EE-----cCCHHHHHhcCCceeecC
Confidence            3569999998 9999999999999998  9999999765332  3333221  11     245788999999999985

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.81  E-value=6.7e-05  Score=59.10  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=47.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-hCCCCEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-LTGMDLV   92 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-~~~aDiV   92 (258)
                      ...++|+|+|+ |.+|..++..|...|.  +|+++|+++++...  +... ....+  +.+ ..+   +.++ ++++|+|
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~--~V~vid~~~~~~~~--~~~~-~g~~~--~~~d~~~~~~l~~~~~~~ad~V   88 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGH--SVVVVDKNEYAFHR--LNSE-FSGFT--VVGDAAEFETLKECGMEKADMV   88 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCGGGGGG--SCTT-CCSEE--EESCTTSHHHHHTTTGGGCSEE
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHH--HHhc-CCCcE--EEecCCCHHHHHHcCcccCCEE
Confidence            34469999998 9999999999998887  89999998653221  2201 11111  111 122   2233 6789999


Q ss_pred             EEcCC
Q 025075           93 IIPAG   97 (258)
Q Consensus        93 Ii~ag   97 (258)
                      |++.+
T Consensus        89 i~~~~   93 (155)
T 2g1u_A           89 FAFTN   93 (155)
T ss_dssp             EECSS
T ss_pred             EEEeC
Confidence            99975

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.81  E-value=2.2e-05  Score=68.07  Aligned_cols=74  Identities=20%  Similarity=0.182  Sum_probs=50.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh----hHH---HHHhcCCCCCeEEEEeC----CCchHhhhCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVT---ADISHMDTGAVVRGFLG----QPQLENALTG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~----g~~---~dl~~~~~~~~v~~~~~----~~d~~~a~~~   88 (258)
                      ++||.|+||+|++|++++..|...|.  +|+.++++...    ...   ..+....    +..+.+    ..++.+++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~~~~~~~l~~~~----v~~v~~D~~d~~~l~~~~~~   77 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKASG----ANIVHGSIDDHASLVEAVKN   77 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHTTT----CEEECCCTTCHHHHHHHHHT
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCC--CEEEEECCcccccCHHHHHHHHHHHhCC----CEEEEeccCCHHHHHHHHcC
Confidence            56899999999999999999998886  78999887531    111   1222211    111111    1245678899


Q ss_pred             CCEEEEcCCCC
Q 025075           89 MDLVIIPAGVP   99 (258)
Q Consensus        89 aDiVIi~ag~~   99 (258)
                      +|+||.+++..
T Consensus        78 ~d~vi~~a~~~   88 (308)
T 1qyc_A           78 VDVVISTVGSL   88 (308)
T ss_dssp             CSEEEECCCGG
T ss_pred             CCEEEECCcch
Confidence            99999998743

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.80  E-value=7.6e-05  Score=63.62  Aligned_cols=112  Identities=18%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCC---chHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQP---QLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++..     .+..+. .-+   ++++.++       
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            9 KSALITGSARGIGRAFAEAYVREGA--TVAIADIDIERARQAAAEIGP-----AAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----CceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  8999998764221  222211     111111 111   2333343       


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +.|++|.+||......   .+.   .+.+..|+.    +.+.+.+.+.+..+.+.|+++|..
T Consensus        82 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  143 (259)
T 4e6p_A           82 GLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQ  143 (259)
T ss_dssp             SCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECCh
Confidence            8999999999743221   111   223445654    445555666655556778877653

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.80  E-value=5.1e-05  Score=63.53  Aligned_cols=77  Identities=19%  Similarity=0.177  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CC---chHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP---QLENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~--~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~-----   87 (258)
                      ++++|.|+||+|.+|.+++..|+..|  .  +|++.|++......  +.+. ....+..+.. -+   ++.+.++     
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~--~V~~~~r~~~~~~~--l~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~   76 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR--HIIATARDVEKATE--LKSI-KDSRVHVLPLTVTCDKSLDTFVSKVGEI   76 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC--EEEEEESSGGGCHH--HHTC-CCTTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc--EEEEEecCHHHHHH--HHhc-cCCceEEEEeecCCHHHHHHHHHHHHHh
Confidence            34589999999999999999999988  6  89999997653322  2221 1112222211 11   2333444     


Q ss_pred             ----CCCEEEEcCCCCC
Q 025075           88 ----GMDLVIIPAGVPR  100 (258)
Q Consensus        88 ----~aDiVIi~ag~~~  100 (258)
                          +.|+||.+||...
T Consensus        77 ~g~~~id~li~~Ag~~~   93 (250)
T 1yo6_A           77 VGSDGLSLLINNAGVLL   93 (250)
T ss_dssp             HGGGCCCEEEECCCCCC
T ss_pred             cCCCCCcEEEECCcccC
Confidence                8999999998754

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=97.78  E-value=0.00038  Score=59.66  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=68.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-----
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-----   86 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-----   86 (258)
                      .+.++|.|+||+|.+|..++..|+..|.  +|++.|++....  ...++....  ..+..+.. -.|   +++++     
T Consensus        29 l~~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~  104 (272)
T 1yb1_A           29 VTGEIVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKA  104 (272)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHH
Confidence            3446899999999999999999999987  899999876421  112232211  12222211 112   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCCC---c---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCC
Q 025075           87 --TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        87 --~~aDiVIi~ag~~~~~g~---~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                        .+.|+||.+||.......   +   -.+.+..|+.-    .+.+.+.+.+. ..+.||++|...
T Consensus       105 ~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS~~  169 (272)
T 1yb1_A          105 EIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKN-NHGHIVTVASAA  169 (272)
T ss_dssp             HTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCC
T ss_pred             HCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCCEEEEEechh
Confidence              378999999987542211   1   12345556555    44444444443 346677776543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.78  E-value=4.4e-05  Score=66.30  Aligned_cols=64  Identities=19%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+ |.+|..++..|...|+  +|.+||+++++...  +....    +..   ..+++++++++|+||++.
T Consensus         1 m~i~iiG~-G~mG~~~a~~l~~~g~--~V~~~~~~~~~~~~--~~~~g----~~~---~~~~~~~~~~~Dvvi~~v   64 (296)
T 2gf2_A            1 MPVGFIGL-GNMGNPMAKNLMKHGY--PLIIYDVFPDACKE--FQDAG----EQV---VSSPADVAEKADRIITML   64 (296)
T ss_dssp             CCEEEECC-STTHHHHHHHHHHTTC--CEEEECSSTHHHHH--HHTTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CeEEEEec-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHcC----Cee---cCCHHHHHhcCCEEEEeC
Confidence            58999998 9999999999998887  89999998653222  22221    221   346678889999999986

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=97.77  E-value=0.0004  Score=58.74  Aligned_cols=117  Identities=18%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--C---CchHhhh-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--Q---PQLENAL-------T   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~---~d~~~a~-------~   87 (258)
                      .++|.|+||+|.+|.+++..|+..|. ..|++.|++.......++........+..+..  +   .++++.+       .
T Consensus         5 ~k~vlVtGas~gIG~~~a~~l~~~G~-~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   83 (254)
T 1sby_A            5 NKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC-cEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhcC
Confidence            45899999999999999999999886 23899998764222222322111112222211  1   1122223       3


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHH----HHHhhhhC--CCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTL----CEGIAKCC--PNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i----~~~i~~~~--p~a~viv~tNP  139 (258)
                      +.|++|.+||...  ...-.+.+..|+.-...+    .+.+.+..  +.+.|+++|..
T Consensus        84 ~id~lv~~Ag~~~--~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~  139 (254)
T 1sby_A           84 TVDILINGAGILD--DHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSV  139 (254)
T ss_dssp             CCCEEEECCCCCC--TTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEECCccCC--HHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECch
Confidence            7999999998642  223344556665544444    44443332  24677777643

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=97.77  E-value=8.1e-05  Score=68.81  Aligned_cols=105  Identities=14%  Similarity=0.180  Sum_probs=64.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC----------------CCeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT----------------GAVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~----------------~~~v~~~~~~~d~~~   84 (258)
                      .|..|||. |.||..+|..|+..|+  +|+.||+++++-.  .|.....                ...+.   .++|   
T Consensus        12 ~~~~ViGl-GyvGlp~A~~La~~G~--~V~~~D~~~~kv~--~L~~g~~pi~epgl~~ll~~~~~~g~l~---~ttd---   80 (431)
T 3ojo_A           12 SKLTVVGL-GYIGLPTSIMFAKHGV--DVLGVDINQQTID--KLQNGQISIEEPGLQEVYEEVLSSGKLK---VSTT---   80 (431)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESS---
T ss_pred             CccEEEee-CHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHCCCCCcCCCCHHHHHHhhcccCceE---EeCc---
Confidence            49999998 9999999999999998  9999999875322  2222210                11232   2333   


Q ss_pred             hhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEe-cCCCC
Q 025075           85 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVN  141 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNPvd  141 (258)
                       +++||+||++.+.|.......    .-++..+.+.++.|.++- |..+++.- |-|..
T Consensus        81 -~~~aDvvii~VpTp~~~~~~~----~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pg  134 (431)
T 3ojo_A           81 -PEASDVFIIAVPTPNNDDQYR----SCDISLVMRALDSILPFLKKGNTIIVESTIAPK  134 (431)
T ss_dssp             -CCCCSEEEECCCCCBCSSSSC----BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTT
T ss_pred             -hhhCCEEEEEeCCCccccccC----CccHHHHHHHHHHHHHhCCCCCEEEEecCCChh
Confidence             468999999988775432100    112334455556666654 34433332 34444

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.77  E-value=8e-05  Score=62.48  Aligned_cols=115  Identities=18%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhhC---CCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENALT---GMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~---~aDiVIi~   95 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++..+...  +..............+  .+++++++   ..|+||.+
T Consensus         8 k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            8 RRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDS--LVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEEC
Confidence            5799999999999999999999987  89999987542211  1110001111111111  12333443   57999999


Q ss_pred             CCCCCCCC---Cc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCC
Q 025075           96 AGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        96 ag~~~~~g---~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ||......   .+   -...+..|+.-.    +.+.+.+.+....+.|+++|..
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~  137 (244)
T 3d3w_A           84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQ  137 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred             CccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCch
Confidence            98653211   11   123455566554    4444444444435677777654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=97.77  E-value=0.00021  Score=60.37  Aligned_cols=115  Identities=16%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++....  ...++....  ..+..+.. -.|   ++++++      
T Consensus        13 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           13 NRVAIVTGGAQNIGLACVTALAEAGA--RVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999876421  122232211  12222211 112   233333      


Q ss_pred             -CCCEEEEcCCCCC-C-C--CCch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPR-K-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~-~-~--g~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                       ..|+||.+||... . +  ..+.   .+.+..|+.-...+++.+.++   ...+.+++++.
T Consensus        89 ~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS  150 (260)
T 3awd_A           89 GRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGS  150 (260)
T ss_dssp             SCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEec
Confidence             7899999998653 1 1  1121   234555655544444443322   13456666654

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=97.76  E-value=3.4e-05  Score=74.79  Aligned_cols=111  Identities=14%  Similarity=0.072  Sum_probs=73.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--CC--c-hHhhhCCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QP--Q-LENALTGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~~--d-~~~a~~~aDiV   92 (258)
                      ++|+|.|+||+|++|++++..|... |.  +|+++|++.....  ++...   ..+..+.+  +.  + ++++++++|+|
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~--~V~~~~r~~~~~~--~~~~~---~~v~~v~~Dl~d~~~~~~~~~~~~D~V  386 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHY--EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVV  386 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSE--EEEEEESCCTTTG--GGTTC---TTEEEEECCTTTCHHHHHHHHHHCSEE
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCC--EEEEEEcCchhhh--hhccC---CceEEEECCCCCcHHHHHHhhcCCCEE
Confidence            4578999999999999999999887 66  8999998764211  11111   12222221  11  1 34567799999


Q ss_pred             EEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|+.....  ..+..+.+..|+.....+++.+.+.+  ..++.+|.
T Consensus       387 ih~Aa~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~--~r~V~~SS  432 (660)
T 1z7e_A          387 LPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR--KRIIFPST  432 (660)
T ss_dssp             EECCCCCCTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             EECceecCccccccCHHHHHHhhhHHHHHHHHHHHHhC--CEEEEEec
Confidence            9999864321  11234566778888889999888776  45665553

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=97.76  E-value=3e-05  Score=65.95  Aligned_cols=101  Identities=20%  Similarity=0.231  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCC--CCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTG--MDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~--aDiVIi~ag   97 (258)
                      |||.|+||+|++|++++..|.. +.  +|++++++....     .      .+. ++....++.+++++  +|+||+++|
T Consensus         1 m~ilVtGatG~iG~~l~~~L~~-g~--~V~~~~r~~~~~-----~------~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   66 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLSE-RH--EVIKVYNSSEIQ-----G------GYKLDLTDFPRLEDFIIKKRPDVIINAAA   66 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHTT-TS--CEEEEESSSCCT-----T------CEECCTTSHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCChhHHHHHHHHhc-CC--eEEEecCCCcCC-----C------CceeccCCHHHHHHHHHhcCCCEEEECCc
Confidence            5899999999999999999884 64  899999875311     0      011 01111234556665  999999998


Q ss_pred             CCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           98 VPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        98 ~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .....  ..+..+.+..|+.....+++.+.+.+.  .++.+|
T Consensus        67 ~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~iv~~S  106 (273)
T 2ggs_A           67 MTDVDKCEIEKEKAYKINAEAVRHIVRAGKVIDS--YIVHIS  106 (273)
T ss_dssp             CCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEE
T ss_pred             ccChhhhhhCHHHHHHHhHHHHHHHHHHHHHhCC--eEEEEe
Confidence            64311  123345677888888999998887643  555554

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=97.76  E-value=4.9e-05  Score=65.41  Aligned_cols=113  Identities=15%  Similarity=0.067  Sum_probs=68.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhhhC-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT-------G   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-------~   88 (258)
                      +++|.|+||+|++|.+++..|+..|.  +|++.|++.+....+  .... ...+..+.. -+|   ++++++       +
T Consensus         5 ~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~--~~~~-~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   79 (281)
T 3m1a_A            5 AKVWLVTGASSGFGRAIAEAAVAAGD--TVIGTARRTEALDDL--VAAY-PDRAEAISLDVTDGERIDVVAADVLARYGR   79 (281)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHH--HHHC-TTTEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH--HHhc-cCCceEEEeeCCCHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999999997  899999976532211  1110 111221111 112   223333       7


Q ss_pred             CCEEEEcCCCCCCC---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|+||.+||.....   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        80 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~~sS  138 (281)
T 3m1a_A           80 VDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERG-SGSVVNISS  138 (281)
T ss_dssp             CSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEcC
Confidence            89999999864221   1122   2345666665    677777776654 456666664

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.76  E-value=8.7e-05  Score=69.85  Aligned_cols=100  Identities=14%  Similarity=0.132  Sum_probs=66.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-CCCCCeEEEEeCCCchHhhhCC---CCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENALTG---MDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~~~d~~~a~~~---aDiVIi   94 (258)
                      +..||+|||+ |.+|++++..|+..|+  +|.+||+++++...  +.. ......+.   .++++++++++   +|+||+
T Consensus         9 ~~~~IgvIGl-G~MG~~lA~~La~~G~--~V~v~dr~~~~~~~--l~~~~~~~~gi~---~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A            9 MSADFGLIGL-AVMGQNLILNAADHGF--TVCAYNRTQSKVDH--FLANEAKGKSII---GATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSHHHHH--HHHTTTTTSSEE---CCSSHHHHHHTSCSSCEEEE
T ss_pred             CCCCEEEEee-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHcccccCCCeE---EeCCHHHHHhcCCCCCEEEE
Confidence            3468999998 9999999999999998  89999998753322  222 10001222   24567777776   999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      +..    ++.           .++++++.+..+. |+.+||..+|-..
T Consensus        81 ~Vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~s~~~~  113 (497)
T 2p4q_A           81 LVK----AGA-----------PVDALINQIVPLLEKGDIIIDGGNSHF  113 (497)
T ss_dssp             CCC----SSH-----------HHHHHHHHHGGGCCTTCEEEECSCCCH
T ss_pred             EcC----ChH-----------HHHHHHHHHHHhCCCCCEEEECCCCCh
Confidence            962    221           1345556666654 5677777887543

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=97.76  E-value=0.0002  Score=60.56  Aligned_cols=105  Identities=16%  Similarity=0.195  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh---HHHHHhcCCCCCeEEEEeCCCchHhhhC----CCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALT----GMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g---~~~dl~~~~~~~~v~~~~~~~d~~~a~~----~aDiV   92 (258)
                      |++|.|+||+|.+|.+++..|+..|.  +|++.|++....   ...|+.+.            .+++++++    ..|++
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~Dl~~~------------~~v~~~~~~~~~~id~l   66 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDAEVIADLSTAEGRK------------QAIADVLAKCSKGMDGL   66 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSSSEECCTTSHHHHH------------HHHHHHHTTCTTCCSEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhhccccccCCCCH------------HHHHHHHHHhCCCCCEE
Confidence            34799999999999999999999987  899999876421   11222221            12334443    45999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP  139 (258)
                      |.+||.....+ .-.+.+..|+.-...+++.+.++   ...+.||++|..
T Consensus        67 v~~Ag~~~~~~-~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           67 VLCAGLGPQTK-VLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             EECCCCCTTCS-SHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             EECCCCCCCcc-cHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            99999754222 23445666665544444444322   224677777654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.75  E-value=9.3e-05  Score=63.20  Aligned_cols=64  Identities=17%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+ |.+|..++..|...|+  +|.++|+........++....    +.     .++.++++++|+||++.
T Consensus         1 M~I~iIG~-G~mG~~la~~l~~~g~--~V~~~~~~~~~~~~~~~~~~g----~~-----~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIERARTVG----VT-----ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHHHHHHHT----CE-----ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEec-hHHHHHHHHHHHHCCC--eEEEeCCccCHHHHHHHHHCC----Cc-----CCHHHHHhcCCEEEEEC
Confidence            58999998 9999999999998887  899988732222222222211    11     23457789999999986

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.74  E-value=0.00012  Score=67.33  Aligned_cols=138  Identities=21%  Similarity=0.239  Sum_probs=87.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhh-hCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENA-LTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a-~~~aDiVIi   94 (258)
                      ..++|.|+|. |.+|+.++..|...|+  +++++|.+++.-..  +...... .+.  -..++   +.++ +++||+||+
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~--~vvvId~d~~~v~~--~~~~g~~-vi~--GDat~~~~L~~agi~~A~~viv   74 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGV--KMVVLDHDPDHIET--LRKFGMK-VFY--GDATRMDLLESAGAAKAEVLIN   74 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCHHHHHH--HHHTTCC-CEE--SCTTCHHHHHHTTTTTCSEEEE
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCHHHHHH--HHhCCCe-EEE--cCCCCHHHHHhcCCCccCEEEE
Confidence            3468999998 9999999999999887  89999998753222  2222211 111  11122   2333 689999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-cCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHH
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRA  173 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~  173 (258)
                      +.+..           ..|    ..++..+++.+|+..++.- .|+.+      .+.+++.+   -+.|+--+..-+.++
T Consensus        75 ~~~~~-----------~~n----~~i~~~ar~~~p~~~Iiara~~~~~------~~~L~~~G---ad~Vi~~~~~~a~~l  130 (413)
T 3l9w_A           75 AIDDP-----------QTN----LQLTEMVKEHFPHLQIIARARDVDH------YIRLRQAG---VEKPERETFEGALKT  130 (413)
T ss_dssp             CCSSH-----------HHH----HHHHHHHHHHCTTCEEEEEESSHHH------HHHHHHTT---CSSCEETTHHHHHHH
T ss_pred             CCCCh-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHH------HHHHHHCC---CCEEECccHHHHHHH
Confidence            86311           223    3456667777898766554 45544      23344543   456776555556677


Q ss_pred             HHHHHHHhCCCCCce
Q 025075          174 NTFVAEVLGLDPRDV  188 (258)
Q Consensus       174 ~~~la~~l~v~~~~v  188 (258)
                      -..+-..+|+++..+
T Consensus       131 a~~~L~~lg~~~~~~  145 (413)
T 3l9w_A          131 GRLALESLGLGPYEA  145 (413)
T ss_dssp             HHHHHHHTTCCHHHH
T ss_pred             HHHHHHHcCCCHHHH
Confidence            777777888888665

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=97.74  E-value=0.00011  Score=63.67  Aligned_cols=131  Identities=13%  Similarity=0.168  Sum_probs=68.2

Q ss_pred             hHHHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc
Q 025075            5 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ   81 (258)
Q Consensus         5 ~~~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d   81 (258)
                      -+|.+.......+.+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++...... .+..+. .-+|
T Consensus        18 l~~~~~~~~~~~~l~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d   94 (281)
T 4dry_A           18 LYFQSMMAQGKGSGEGRIALVTGGGTGVGRGIAQALSAEGY--SVVITGRRPDVLDAAAGEIGGRTGN-IVRAVVCDVGD   94 (281)
T ss_dssp             ----------------CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSS-CEEEEECCTTC
T ss_pred             EEEeccccccCCCCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCC-eEEEEEcCCCC
Confidence            34544444433344456789999999999999999999997  899999986421  12222211110 111111 1112


Q ss_pred             ---hHhhh-------CCCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhC-CCcEEEEecC
Q 025075           82 ---LENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        82 ---~~~a~-------~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                         +++.+       ...|++|.+||.....+    .+.   ...+..|+.    +.+.+.+.+.+.. ..+.||++|.
T Consensus        95 ~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS  173 (281)
T 4dry_A           95 PDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS  173 (281)
T ss_dssp             HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence               22222       36799999999753321    121   224455544    4566666666655 3577777765

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.74  E-value=0.00022  Score=63.71  Aligned_cols=65  Identities=23%  Similarity=0.262  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+||+|||+ |.+|.+++..|...|+  +|+++|++.....  +.....   .+..   + ++++++++||+||++.
T Consensus        16 ~~~I~IIG~-G~mG~alA~~L~~~G~--~V~~~~~~~~~~~--~~a~~~---G~~~---~-~~~e~~~~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGY-GSQGHAHACNLKDSGV--DVTVGLRSGSATV--AKAEAH---GLKV---A-DVKTAVAAADVVMILT   80 (338)
T ss_dssp             TSCEEEECC-SHHHHHHHHHHHHTTC--CEEEECCTTCHHH--HHHHHT---TCEE---E-CHHHHHHTCSEEEECS
T ss_pred             CCEEEEECc-hHHHHHHHHHHHHCcC--EEEEEECChHHHH--HHHHHC---CCEE---c-cHHHHHhcCCEEEEeC
Confidence            468999998 9999999999998886  7999998765311  111111   1121   1 5668899999999986

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=97.73  E-value=0.00017  Score=61.37  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=51.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC---CCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEe----CCCchHhhhC--
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINP---LVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFL----GQPQLENALT--   87 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~---~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~----~~~d~~~a~~--   87 (258)
                      .++++|.|+||+|.+|.+++..|+..|   .  +|++.|++..... ..++.....  .+..+.    ...++.+.++  
T Consensus        19 ~~~k~vlITGasggIG~~la~~L~~~G~~~~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~~   94 (267)
T 1sny_A           19 SHMNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNHS--NIHILEIDLRNFDAYDKLVADI   94 (267)
T ss_dssp             -CCSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHCT--TEEEEECCTTCGGGHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhcCCCCc--EEEEEecChhhhHHHHHhhccCC--ceEEEEecCCChHHHHHHHHHH
Confidence            445689999999999999999999988   5  8999999875222 222321111  122111    1123344444  


Q ss_pred             -------CCCEEEEcCCCCC
Q 025075           88 -------GMDLVIIPAGVPR  100 (258)
Q Consensus        88 -------~aDiVIi~ag~~~  100 (258)
                             ..|+||.+||...
T Consensus        95 ~~~~g~~~id~li~~Ag~~~  114 (267)
T 1sny_A           95 EGVTKDQGLNVLFNNAGIAP  114 (267)
T ss_dssp             HHHHGGGCCSEEEECCCCCC
T ss_pred             HHhcCCCCccEEEECCCcCC
Confidence                   7999999999754

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=97.72  E-value=2.4e-05  Score=68.09  Aligned_cols=163  Identities=15%  Similarity=0.199  Sum_probs=88.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC--CCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT--GMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aDiVIi~a   96 (258)
                      ||.|+||+|++|++++..|...  +.  +|+++|++.....     ...   .+. ++....++.++++  ++|+||++|
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~--~V~~~~r~~~~~~-----~~~---~~~~D~~d~~~~~~~~~~~~~d~vih~a   70 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKK--NVIASDIVQRDTG-----GIK---FITLDVSNRDEIDRAVEKYSIDAIFHLA   70 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGG--GEEEEESSCCCCT-----TCC---EEECCTTCHHHHHHHHHHTTCCEEEECC
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCC--EEEEecCCCcccc-----Cce---EEEecCCCHHHHHHHHhhcCCcEEEECC
Confidence            5899999999999999988876  55  7899987653211     100   111 0101123455666  899999999


Q ss_pred             CCCCCCC-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHH
Q 025075           97 GVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT  175 (258)
Q Consensus        97 g~~~~~g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~  175 (258)
                      +...... ....+.+..|+.....+++.+.+.+.. .++.+|...-.-..--...........+....|.+.....++..
T Consensus        71 ~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~  149 (317)
T 3ajr_A           71 GILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQ  149 (317)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHH
T ss_pred             cccCCccccChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHH
Confidence            7532111 123456778999999999998876544 44444321100000000000000001122233334444444444


Q ss_pred             HHHHHhCCCCCcee-EEEEec
Q 025075          176 FVAEVLGLDPRDVD-VPVVGG  195 (258)
Q Consensus       176 ~la~~l~v~~~~v~-~~v~G~  195 (258)
                      .+++..+++..-++ ..++|.
T Consensus       150 ~~~~~~~~~~~~lR~~~~~g~  170 (317)
T 3ajr_A          150 YYYEKFGLDVRSLRYPGIISY  170 (317)
T ss_dssp             HHHHHHCCEEEEEEECEEECS
T ss_pred             HHHHhcCCeEEEEecCcEecc
Confidence            55566677666666 457774

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=97.72  E-value=7.7e-05  Score=69.85  Aligned_cols=104  Identities=11%  Similarity=0.057  Sum_probs=65.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHhcC-------CCCCeEEEEeCC----Cch
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHM-------DTGAVVRGFLGQ----PQL   82 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~~~-------~~~~~v~~~~~~----~d~   82 (258)
                      .+++|.|+||+|++|++++..|...|.  +|++++++......     ..+...       .....+..+.+.    .++
T Consensus       149 ~~~~VLVTGatG~iG~~l~~~L~~~g~--~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  226 (508)
T 4f6l_B          149 PLGNTLLTGATGFLGAYLIEALQGYSH--RIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  226 (508)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHTBTTEE--EEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSC
T ss_pred             CCCeEEEECCccchHHHHHHHHHhcCC--EEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccC
Confidence            457999999999999999999976665  89999987652110     011100       001133332211    122


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK  126 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~  126 (258)
                      . +..++|+||.+|+... ...+..++...|+...+.+++.+.+
T Consensus       227 ~-~~~~~D~Vih~Aa~~~-~~~~~~~~~~~Nv~gt~~ll~~a~~  268 (508)
T 4f6l_B          227 V-LPENMDTIIHAGARTD-HFGDDDEFEKVNVQGTVDVIRLAQQ  268 (508)
T ss_dssp             C-CSSCCSEEEECCCC---------CCHHHHHHHHHHHHHHHHT
T ss_pred             C-CccCCCEEEECCceec-CCCCHHHHhhhHHHHHHHHHHHHHh
Confidence            2 5679999999998642 1223455677899999999999887

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.72  E-value=9.2e-05  Score=65.01  Aligned_cols=64  Identities=19%  Similarity=0.275  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .||++||. |.+|..++..|...|+  +|+.||+++++..  ++....    ...   ..++.++++++|+||++.
T Consensus         6 ~kIgfIGL-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~~--~l~~~G----~~~---~~s~~e~~~~~dvvi~~l   69 (297)
T 4gbj_A            6 EKIAFLGL-GNLGTPIAEILLEAGY--ELVVWNRTASKAE--PLTKLG----ATV---VENAIDAITPGGIVFSVL   69 (297)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEC-------C--TTTTTT----CEE---CSSGGGGCCTTCEEEECC
T ss_pred             CcEEEEec-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHcC----CeE---eCCHHHHHhcCCceeeec
Confidence            48999998 9999999999999998  9999999875322  222221    111   245678999999999986

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.71  E-value=0.00042  Score=59.66  Aligned_cols=115  Identities=16%  Similarity=0.153  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++.....  .+..+. .-+|   ++++++       
T Consensus        23 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           23 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999987  899999876421  1222322111  122111 1112   222333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh-----CCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~-----~p~a~viv~tNP  139 (258)
                      ..|++|.+||......   .+   -.+.+..|+.-...+++.+.+.     ...+.||++|..
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~  161 (277)
T 2rhc_B           99 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIAST  161 (277)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECcc
Confidence            7999999998753221   11   1234566766655555554433     124667777643

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.70  E-value=0.0001  Score=62.22  Aligned_cols=156  Identities=15%  Similarity=0.149  Sum_probs=83.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh---C
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL---T   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~---~   87 (258)
                      +.+.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+.... .-.|   +.+.+   .
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~   83 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS--KVIISGSNEEKLKSLGNALKD-----NYTIEVCNLANKEECSNLISKTS   83 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHTCS
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhcc-----CccEEEcCCCCHHHHHHHHHhcC
Confidence            34456899999999999999999999997  8999999764221  112221     111111 1112   22333   3


Q ss_pred             CCCEEEEcCCCCCCC------CCchhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKP------GMTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~------g~~r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|.+||.....      ..+-...+..|+.-    .+.+.+.+.+. ..+.|+++|.....           . +.
T Consensus        84 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-~~  150 (249)
T 3f9i_A           84 NLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQK-RYGRIINISSIVGI-----------A-GN  150 (249)
T ss_dssp             CCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC--------------CC
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEEEccHHhc-----------c-CC
Confidence            789999999864321      11223345555544    44444444443 35677777765441           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+...-..+-+.++++++  +..+++.++.
T Consensus       151 ~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  185 (249)
T 3f9i_A          151 PGQANYCASKAGLIGMTKSLSYEVA--TRGITVNAVA  185 (249)
T ss_dssp             SCSHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEEEEe
Confidence            3322333332223345566666663  3456554443

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.70  E-value=0.00012  Score=62.09  Aligned_cols=74  Identities=22%  Similarity=0.256  Sum_probs=49.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC--C--CchHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG--Q--PQLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~--~--~d~~~a~~------   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|+++|++.....  ..++..     .+..+..  +  .+++++++      
T Consensus        12 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (265)
T 2o23_A           12 GLVAVITGGASGLGLATAERLVGQGA--SAVLLDLPNSGGEAQAKKLGN-----NCVFAPADVTSEKDVQTALALAKGKF   84 (265)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSSHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcHhHHHHHHHhCC-----ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            45899999999999999999999987  8999999875221  122211     1221111  1  12334444      


Q ss_pred             -CCCEEEEcCCCCC
Q 025075           88 -GMDLVIIPAGVPR  100 (258)
Q Consensus        88 -~aDiVIi~ag~~~  100 (258)
                       ..|+||.+||...
T Consensus        85 g~id~li~~Ag~~~   98 (265)
T 2o23_A           85 GRVDVAVNCAGIAV   98 (265)
T ss_dssp             SCCCEEEECCCCCC
T ss_pred             CCCCEEEECCccCC
Confidence             8999999998653

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.69  E-value=9.3e-05  Score=63.88  Aligned_cols=116  Identities=14%  Similarity=0.064  Sum_probs=68.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--CchHhhhC-------CC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQLENALT-------GM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~a   89 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++...   ........+  .++++.++       ..
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  103 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGY--GVALAGRRLDALQETAAEIGDD---ALCVPTDVTDPDSVRALFTATVEKFGRV  103 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTSC---CEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---eEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4678889999999999999999997  899999976422  12222211   011101111  12223333       89


Q ss_pred             CEEEEcCCCCCCCC----Cch---hhHHHHhHHH----HHHHHHHhhhhCC-CcEEEEecCCCC
Q 025075           90 DLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCP-NATVNLISNPVN  141 (258)
Q Consensus        90 DiVIi~ag~~~~~g----~~r---~d~~~~n~~i----~~~i~~~i~~~~p-~a~viv~tNPvd  141 (258)
                      |++|.+||.....+    .+.   .+.+..|+.-    .+.+.+.+.+..+ .+.||++|....
T Consensus       104 D~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  167 (272)
T 4dyv_A          104 DVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISA  167 (272)
T ss_dssp             CEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSST
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhh
Confidence            99999999743211    121   2345555543    5666666666543 577877765433

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=97.69  E-value=0.0005  Score=57.55  Aligned_cols=116  Identities=18%  Similarity=0.222  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-----   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++. ++++...  ...++....  ..+..+.. -.|   ++++++     
T Consensus         5 ~~~vlItGasggiG~~~a~~l~~~G~--~V~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            5 GKTAIVTGSSRGLGKAIAWKLGNMGA--NIVLNGSPASTSLDATAEEFKAAG--INVVVAKGDVKNPEDVENMVKTAMDA   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECTTCSHHHHHHHHHHHTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCcCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHh
Confidence            35899999999999999999999987  88888 4554321  112222211  12222211 112   223333     


Q ss_pred             --CCCEEEEcCCCCCCC------CCchhhHHHHhHHHHH----HHHHHhhhhCCCcEEEEecCCC
Q 025075           88 --GMDLVIIPAGVPRKP------GMTRDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~------g~~r~d~~~~n~~i~~----~i~~~i~~~~p~a~viv~tNPv  140 (258)
                        +.|+||.+||.....      ...-.+.+..|+.-..    .+.+.+.+. ..+.|+++|...
T Consensus        81 ~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~~~iv~~sS~~  144 (247)
T 2hq1_A           81 FGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQ-KSGKIINITSIA  144 (247)
T ss_dssp             HSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHH-TCEEEEEECC--
T ss_pred             cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcChh
Confidence              799999999864321      1122345566666544    444444333 346677776543

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=97.69  E-value=0.00073  Score=57.59  Aligned_cols=115  Identities=18%  Similarity=0.144  Sum_probs=70.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++........+..+.. -+|   ++++++       
T Consensus         8 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            8 KVALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCcHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999997  8999998764221  122322111112222211 122   223332       


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHH----HHHHHHHHhhhhC--CCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAG----IVRTLCEGIAKCC--PNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~----i~~~i~~~i~~~~--p~a~viv~tNP  139 (258)
                      ..|++|.+||....  ..-.+.+..|+.    ..+.+.+.+.+..  +.+.||++|..
T Consensus        86 ~id~lv~~Ag~~~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~  141 (267)
T 2gdz_A           86 RLDILVNNAGVNNE--KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSL  141 (267)
T ss_dssp             CCCEEEECCCCCCS--SSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCG
T ss_pred             CCCEEEECCCCCCh--hhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCc
Confidence            57999999986532  223345566655    5677777776653  25677777653

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.68  E-value=8e-05  Score=69.72  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--CCCeEEEEeCCCchHhhhC---CCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALT---GMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~---~aDiVIi~   95 (258)
                      |||+|||+ |.+|..++..|...|+  +|.+||+++++...+.-.+..  ....+.   .+++++++++   ++|+||++
T Consensus         2 MkIgVIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~l~~~~g~~~~~~~i~---~~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKSEEFMKANASAPFAGNLK---AFETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHTTTSTTGGGEE---ECSCHHHHHHHBCSSCEEEEC
T ss_pred             CEEEEECh-HHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhcCCCCCCCCeE---EECCHHHHHhcccCCCEEEEe
Confidence            68999998 9999999999999887  899999876432221101110  011132   2356666666   59999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      ..    ++.           .++++++.+..+. |+.+||..+|...
T Consensus        76 Vp----~~~-----------~v~~vl~~l~~~l~~g~iIId~sng~~  107 (478)
T 1pgj_A           76 VQ----AGA-----------ATDSTIEQLKKVFEKGDILVDTGNAHF  107 (478)
T ss_dssp             CC----CSH-----------HHHHHHHHHHHHCCTTCEEEECCCCCH
T ss_pred             cC----ChH-----------HHHHHHHHHHhhCCCCCEEEECCCCCh
Confidence            72    221           1233444454443 6677777787653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=97.68  E-value=0.00025  Score=61.51  Aligned_cols=121  Identities=12%  Similarity=0.087  Sum_probs=69.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcC---CCCCeEEEEeC-CCc---hHhhhC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHM---DTGAVVRGFLG-QPQ---LENALT   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~---~~~~~v~~~~~-~~d---~~~a~~   87 (258)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++...   .....+..+.. -+|   +.+.++
T Consensus        15 ~l~~k~vlVTGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~   92 (303)
T 1yxm_A           15 LLQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVK   92 (303)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHH
Confidence            34446899999999999999999999987  899999876421  12233221   01112222211 112   223333


Q ss_pred             -------CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCC
Q 025075           88 -------GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP  139 (258)
Q Consensus        88 -------~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNP  139 (258)
                             ..|+||.+||......   .+.   ...+..|+.-...+++.+.+.   ...+.+++++..
T Consensus        93 ~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~  160 (303)
T 1yxm_A           93 STLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVP  160 (303)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEee
Confidence                   5899999998643211   121   234566766555555554331   124566666644

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.68  E-value=0.00018  Score=67.39  Aligned_cols=98  Identities=17%  Similarity=0.169  Sum_probs=63.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhc-CCCCCeEEEEeCCCchHhhh---CCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH-MDTGAVVRGFLGQPQLENAL---TGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~-~~~~~~v~~~~~~~d~~~a~---~~aDiVIi~a   96 (258)
                      |||+|||+ |.+|++++..|...|+  +|.+||+++++...  +.. ......+.   .++++++++   +++|+||++.
T Consensus         3 m~IgvIG~-G~mG~~lA~~La~~G~--~V~v~dr~~~~~~~--l~~~~~~g~gi~---~~~~~~e~v~~l~~aDvVilaV   74 (482)
T 2pgd_A            3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVDD--FLANEAKGTKVL---GAHSLEEMVSKLKKPRRIILLV   74 (482)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHHH--HHHTTTTTSSCE---ECSSHHHHHHHBCSSCEEEECS
T ss_pred             CeEEEECh-HHHHHHHHHHHHHCCC--eEEEEeCCHHHHHH--HHhccccCCCeE---EeCCHHHHHhhccCCCEEEEeC
Confidence            68999998 9999999999999887  89999998753322  221 00001222   235666665   5999999986


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      .    ++.           .++++++.+..+. |+.+||..+|...
T Consensus        75 p----~~~-----------~v~~vl~~l~~~l~~g~iII~~s~~~~  105 (482)
T 2pgd_A           75 K----AGQ-----------AVDNFIEKLVPLLDIGDIIIDGGNSEY  105 (482)
T ss_dssp             C----TTH-----------HHHHHHHHHHHHCCTTCEEEECSCCCH
T ss_pred             C----ChH-----------HHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence            2    211           1233444454443 5677777777654

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=97.68  E-value=0.00034  Score=58.58  Aligned_cols=116  Identities=21%  Similarity=0.187  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhhC--
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENALT--   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--   87 (258)
                      ++|.|+||+|.+|.+++..|+..|...     +|++.|++.....  ..++...  ...+..+.. -.|   ++++++  
T Consensus         3 k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~v~~~~~~~   80 (244)
T 2bd0_A            3 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAE--GALTDTITADISDMADVRRLTTHI   80 (244)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTT--TCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHcc--CCeeeEEEecCCCHHHHHHHHHHH
Confidence            479999999999999999998877522     7999998754221  2223221  112322211 112   223333  


Q ss_pred             -----CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHH----HHHHHhhhhCCCcEEEEecCC
Q 025075           88 -----GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVR----TLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 -----~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~----~i~~~i~~~~p~a~viv~tNP  139 (258)
                           +.|+||.+||......   .+   -...+..|+.-..    .+.+.+.+. ..+.|+++|..
T Consensus        81 ~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~isS~  146 (244)
T 2bd0_A           81 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSV  146 (244)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCG
T ss_pred             HHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCEEEEEecc
Confidence                 7999999998753221   11   2234455654444    444444433 34677777653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.68  E-value=0.00026  Score=59.05  Aligned_cols=155  Identities=15%  Similarity=0.096  Sum_probs=80.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC-CCCCeEEEEe--CCCchHhhhCCC----CEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFL--GQPQLENALTGM----DLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~-~~~~~v~~~~--~~~d~~~a~~~a----DiVI   93 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++++....  +.+. ..........  ...++++.++..    |++|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~--~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv   77 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGK--ATYLTGRSESKLST--VTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVV   77 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHHH--HHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEE
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEE
Confidence            4699999999999999999999997  79999997642221  1111 1111111111  111233344443    8999


Q ss_pred             EcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-C-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           94 IPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        94 i~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      .+||......   .+.   ...+..|+.-...+.+.+.++- . .+.+++++.....           . +.+..-.++.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~-----------~-~~~~~~~Y~a  145 (230)
T 3guy_A           78 HSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQ-----------Q-PKAQESTYCA  145 (230)
T ss_dssp             ECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGT-----------S-CCTTCHHHHH
T ss_pred             EeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccC-----------C-CCCCCchhHH
Confidence            9998654221   121   2345566655544444444331 1 2356666543221           0 1222222333


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +......+-+.++++++  +..|++..+
T Consensus       146 sKaa~~~~~~~la~e~~--~~gi~v~~v  171 (230)
T 3guy_A          146 VKWAVKGLIESVRLELK--GKPMKIIAV  171 (230)
T ss_dssp             HHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             HHHHHHHHHHHHHHHHH--hcCeEEEEE
Confidence            32233456677788875  445554433

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.68  E-value=0.00056  Score=59.70  Aligned_cols=114  Identities=17%  Similarity=0.175  Sum_probs=69.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.....  .+..+. .-+|   +++.++       
T Consensus        32 k~vlVTGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           32 RAAVVTGGASGIGLATATEFARRGA--RLVLSDVDQPALEQAVNGLRGQGF--DAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            4699999999999999999999997  899999986421  2223332211  222111 1122   223333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.|+++|.
T Consensus       108 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS  168 (301)
T 3tjr_A          108 GVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTAS  168 (301)
T ss_dssp             SCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            7899999999753211   111   224444543    45555555666665677777765

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.67  E-value=0.00019  Score=56.22  Aligned_cols=101  Identities=10%  Similarity=0.025  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ChhHHH-HHhcCCCCCeEEEEeC-CCc---hHhh-hCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-DISHMDTGAVVRGFLG-QPQ---LENA-LTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~g~~~-dl~~~~~~~~v~~~~~-~~d---~~~a-~~~aDi   91 (258)
                      +..||.|+|+ |.+|+.++..|...|.  +++++|.+. ++...+ +.....    +..+.+ .+|   +.++ ++++|.
T Consensus         2 ~~~~vlI~G~-G~vG~~la~~L~~~g~--~V~vid~~~~~~~~~~~~~~~~~----~~~i~gd~~~~~~l~~a~i~~ad~   74 (153)
T 1id1_A            2 RKDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRA   74 (153)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHCCC--CEEEEECCChHHHHHHHHhhcCC----CeEEEcCCCCHHHHHHcChhhCCE
Confidence            3458999998 9999999999998887  899999974 221111 111111    111222 112   3344 889999


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd  141 (258)
                      ||++.+.         +  ..|..    ++...++..|+..++. +.||..
T Consensus        75 vi~~~~~---------d--~~n~~----~~~~a~~~~~~~~ii~~~~~~~~  110 (153)
T 1id1_A           75 ILALSDN---------D--ADNAF----VVLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EEECSSC---------H--HHHHH----HHHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEEecCC---------h--HHHHH----HHHHHHHHCCCCEEEEEECCHHH
Confidence            9998631         1  23433    3334455567655554 566765

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.66  E-value=0.001  Score=57.24  Aligned_cols=116  Identities=16%  Similarity=0.184  Sum_probs=68.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--CchHhhhC-------CC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQLENALT-------GM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~a   89 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++..............+  .++++.++       ..
T Consensus        33 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~i  110 (276)
T 3r1i_A           33 KRALITGASTGIGKKVALAYAEAGA--QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELGGI  110 (276)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            5789999999999999999999997  899999987522  22233322111111111111  12333333       79


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus       111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS  169 (276)
T 3r1i_A          111 DIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTAS  169 (276)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECc
Confidence            99999999754321   121   223445543    45556666666555577777664

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.66  E-value=0.00046  Score=58.56  Aligned_cols=114  Identities=19%  Similarity=0.293  Sum_probs=67.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.....  .+..+. .-+|   ++++++       
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999997  899999876422  1222322111  122111 1122   333333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||++|.
T Consensus        79 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  139 (256)
T 1geg_A           79 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACS  139 (256)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECc
Confidence            7999999998643211   111   223455554    44556666665543567777764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=97.66  E-value=0.001  Score=56.56  Aligned_cols=116  Identities=10%  Similarity=0.070  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++....  ..+..+.. -+|   +++.+      
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA--RVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEK   80 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            345789999999999999999999997  899999986522  222333221  12222211 112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...|++|.+||......   .+.   ...+..|+.    ..+.+.+.+.+....+.|++++.
T Consensus        81 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  143 (257)
T 3imf_A           81 FGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVA  143 (257)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECc
Confidence             27899999998643211   111   223455554    34455555545555677777764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=97.65  E-value=2.2e-05  Score=66.84  Aligned_cols=152  Identities=13%  Similarity=0.049  Sum_probs=82.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-------CCCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-------TGMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aDiVI   93 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++......     ......   +....++++.+       ...|++|
T Consensus        23 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~-----~~~~~d---~~d~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           23 KNILVLGGSGALGAEVVKFFKSKSW--NTISIDFRENPNAD-----HSFTIK---DSGEEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCTTSS-----EEEECS---CSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcccccc-----cceEEE---eCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            5789999999999999999999997  89999998742110     000000   01111222222       3569999


Q ss_pred             EcCCCCCCC----CCc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           94 IPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        94 i~ag~~~~~----g~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      .+||.....    ..+   -...+..|+.-...+.+.+.++- +.+.||++|.....           . +.+..-.++.
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~-~~~~~~~Y~~  160 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAAL-----------N-RTSGMIAYGA  160 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG-----------S-CCTTBHHHHH
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhc-----------c-CCCCCchhHH
Confidence            999864321    111   12345567666666666555442 34677777653321           1 1222222222


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +......+-+.++++++..+..|++.++-
T Consensus       161 sKaa~~~~~~~la~e~~~~~~gi~v~~v~  189 (251)
T 3orf_A          161 TKAATHHIIKDLASENGGLPAGSTSLGIL  189 (251)
T ss_dssp             HHHHHHHHHHHHTSTTSSSCTTCEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhcccCCCcEEEEEe
Confidence            22222334455555554336667655443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.65  E-value=7.7e-05  Score=67.21  Aligned_cols=100  Identities=19%  Similarity=0.140  Sum_probs=60.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCC-----CCcEEEEEeCCCChhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINP-----LVSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~-----~~~ei~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aD   90 (258)
                      |+|+||+|+||+|.+|..+...|...+     .+ ||+++......++..+-.|..+.  ..+....  .+ .++++++|
T Consensus         7 M~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~-ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~--~~-~~~~~~~D   82 (352)
T 2nqt_A            7 ANATKVAVAGASGYAGGEILRLLLGHPAYADGRL-RIGALTAATSAGSTLGEHHPHLTPLAHRVVEP--TE-AAVLGGHD   82 (352)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSE-EEEEEEESSCTTSBGGGTCTTCGGGTTCBCEE--CC-HHHHTTCS
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHcCCCCCCccE-EEEEEECCCcCCCchhhhcccccccceeeecc--CC-HHHhcCCC
Confidence            345799999999999999999988776     43 67776433222222222222111  0111111  23 35678999


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      +||++.|..    .            .+++++.+ +.  .+++|..|+|-
T Consensus        83 vVf~alg~~----~------------s~~~~~~~-~~--G~~vIDlSa~~  113 (352)
T 2nqt_A           83 AVFLALPHG----H------------SAVLAQQL-SP--ETLIIDCGADF  113 (352)
T ss_dssp             EEEECCTTS----C------------CHHHHHHS-CT--TSEEEECSSTT
T ss_pred             EEEECCCCc----c------------hHHHHHHH-hC--CCEEEEECCCc
Confidence            999997532    1            25566666 43  35777788775

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=97.64  E-value=0.00015  Score=60.52  Aligned_cols=112  Identities=18%  Similarity=0.114  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCC--CchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQ--PQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~a   89 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++......  .++..    ........+  .++++.+       .+.
T Consensus         6 k~vlVtGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (234)
T 2ehd_A            6 GAVLITGASRGIGEATARLLHAKGY--RVGLMARDEKRLQALAAELEG----ALPLPGDVREEGDWARAVAAMEEAFGEL   79 (234)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTT----CEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhh----ceEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4799999999999999999999987  89999987542211  11111    111111111  1222222       378


Q ss_pred             CEEEEcCCCCCCCC---Cc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |+||.++|......   .+   -.+.+..|+.-.    +.+.+.+.+. ..+.|+++|..
T Consensus        80 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~~~iv~isS~  138 (234)
T 2ehd_A           80 SALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRR-GGGTIVNVGSL  138 (234)
T ss_dssp             CEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECCT
T ss_pred             CEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCcEEEEECCc
Confidence            99999998643211   11   123455565443    4555555543 34667767654

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.64  E-value=0.0002  Score=60.97  Aligned_cols=114  Identities=20%  Similarity=0.289  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCC--CchHhhhC-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQ--PQLENALT-------G   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~   88 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++......  .++..   .........+  .+++++++       +
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~D~~d~~~v~~~~~~~~~~~g~   86 (263)
T 3ak4_A           12 GRKAIVTGGSKGIGAAIARALDKAGA--TVAIADLDVMAAQAVVAGLEN---GGFAVEVDVTKRASVDAAMQKAIDALGG   86 (263)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTCTT---CCEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCeEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence            35899999999999999999999997  89999987642211  11111   1111111111  12333444       8


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|+||.+||......   .+.   ...+..|+.    +.+...+.+.+....+.|++++.
T Consensus        87 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS  146 (263)
T 3ak4_A           87 FDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTAS  146 (263)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecc
Confidence            999999998653211   111   234455554    33444455544442466776654

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=97.63  E-value=0.0007  Score=57.64  Aligned_cols=116  Identities=18%  Similarity=0.160  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++....  ..+..+.. -+|   +.+.+       .
T Consensus        30 k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           30 QVAVVTGASRGIGAAIARKLGSLGA--RVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999987  899999986422  222332221  12222211 112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..|+||.+||.....+    .+.   .+.+..|+.-    .+.+.+.+.+. ..+.||++|....
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~  169 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAA-KRGHIINISSLAG  169 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCCEEEEECSSCS
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCceEEEEechhh
Confidence            5899999998732222    111   2244555544    44444444433 4567777765443

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=97.63  E-value=0.0003  Score=59.58  Aligned_cols=118  Identities=14%  Similarity=0.132  Sum_probs=65.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCC-----CCCeEEEEeC-CCc---hHhhhC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMD-----TGAVVRGFLG-QPQ---LENALT   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~-----~~~~v~~~~~-~~d---~~~a~~   87 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++......  .++....     ....+..+.. -+|   +.++++
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~   83 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA--TVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLE   83 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHH
Confidence            345899999999999999999999987  89999987542211  1111110     0011222211 122   233344


Q ss_pred             C-------C-CEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHH----HhhhhCCCcEEEEecC
Q 025075           88 G-------M-DLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~-------a-DiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~----~i~~~~p~a~viv~tN  138 (258)
                      +       . |+||.+||......   .+   -.+.+..|+.-...+.+    .+.+....+.||++|.
T Consensus        84 ~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  152 (264)
T 2pd6_A           84 QVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISS  152 (264)
T ss_dssp             HHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             HHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECC
Confidence            3       3 99999998753211   11   22345556554444444    4444333567777664

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.63  E-value=0.00022  Score=55.15  Aligned_cols=97  Identities=11%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHh-hhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LEN-ALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~-a~~~aDiVIi~   95 (258)
                      .+|.|+|+ |.+|..++..|...|+  +++++|.+++....  +.....  .+  +.+ .++   +++ .++++|+||++
T Consensus         8 ~~viIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~~~--~~~~g~--~~--i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            8 NHALLVGY-GRVGSLLGEKLLASDI--PLVVIETSRTRVDE--LRERGV--RA--VLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEEEESCHHHHHH--HHHTTC--EE--EESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEECCHHHHHH--HHHcCC--CE--EECCCCCHHHHHhcCcccCCEEEEE
Confidence            58999998 9999999999999887  89999998753222  222111  11  111 122   222 25789999998


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec-CCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NPvd  141 (258)
                      .+..           ..|..    ++..+++..|+..++.-. +|-.
T Consensus        79 ~~~~-----------~~n~~----~~~~a~~~~~~~~iiar~~~~~~  110 (140)
T 3fwz_A           79 IPNG-----------YEAGE----IVASARAKNPDIEIIARAHYDDE  110 (140)
T ss_dssp             CSCH-----------HHHHH----HHHHHHHHCSSSEEEEEESSHHH
T ss_pred             CCCh-----------HHHHH----HHHHHHHHCCCCeEEEEECCHHH
Confidence            6311           22333    344566667887666544 4543

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.62  E-value=0.00019  Score=61.22  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CC---chHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QP---QLENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~---d~~~a~~-----   87 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++...   ..+..+.. -+   ++.++++     
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~   89 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAK   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCChhHHHHHHHHhCCC---CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999987  8999998754221  1222211   02222111 11   2333333     


Q ss_pred             --CCCEEEEcCCCCCCC-----CCc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKP-----GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~-----g~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                        +.|+||.++|.....     ..+   -.+.+..|+.-...+++.+.++   ...+.|+++|.
T Consensus        90 ~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS  153 (278)
T 2bgk_A           90 HGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTAS  153 (278)
T ss_dssp             HSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             cCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEee
Confidence              799999999864321     111   1234556665544444444432   23466776664

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.61  E-value=0.00018  Score=61.16  Aligned_cols=111  Identities=14%  Similarity=0.118  Sum_probs=63.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCC---chHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQP---QLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++..     .+..+. .-+   ++++.++       
T Consensus         8 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   80 (257)
T 3tpc_A            8 RVFIVTGASSGLGAAVTRMLAQEGA--TVLGLDLKPPAGEEPAAELGA-----AVRFRNADVTNEADATAALAFAKQEFG   80 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESSCC-----------------CEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999999875221  111211     111111 111   2233333       


Q ss_pred             CCCEEEEcCCCCCCCC-------Cch---hhHHHHhHHH----HHHHHHHhhhh-----CCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG-------MTR---DDLFNINAGI----VRTLCEGIAKC-----CPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g-------~~r---~d~~~~n~~i----~~~i~~~i~~~-----~p~a~viv~tN  138 (258)
                      ..|++|.+||......       .+.   ...+..|+.-    .+.+.+.+.+.     ...+.||++|.
T Consensus        81 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS  150 (257)
T 3tpc_A           81 HVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTAS  150 (257)
T ss_dssp             CCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEec
Confidence            8999999999753221       111   2234556543    44445555443     23466777764

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=97.60  E-value=0.00025  Score=60.75  Aligned_cols=106  Identities=13%  Similarity=0.088  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhh-------CCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENAL-------TGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~aDi   91 (258)
                      ++|.|+||+|.+|..++..|+..|.  +|++.|++...+       ..  ........+  .++++++       ...|+
T Consensus         9 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~-------~~--~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~   77 (264)
T 2dtx_A            9 KVVIVTGASMGIGRAIAERFVDEGS--KVIDLSIHDPGE-------AK--YDHIECDVTNPDQVKASIDHIFKEYGSISV   77 (264)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSCCCS-------CS--SEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEecCcccC-------Cc--eEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            5799999999999999999999997  899999876431       00  000000001  1122223       37999


Q ss_pred             EEEcCCCCCCCC---Cc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           92 VIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~g---~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|.+||......   .+   -...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        78 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  133 (264)
T 2dtx_A           78 LVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRS-RDPSIVNISS  133 (264)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSCEEEEECC
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence            999998753211   12   123455566554    4444444432 3466777764

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.60  E-value=3.8e-05  Score=64.48  Aligned_cols=112  Identities=15%  Similarity=0.067  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh---------CCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~---------~~aD   90 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+++..... .. . .....+.   ...++++.+         .+.|
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~D~~---~~~~~~~~~~~~~~~~~~g~id   74 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSANDQAD-SN-I-LVDGNKN---WTEQEQSILEQTASSLQGSQVD   74 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCCTTSS-EE-E-ECCTTSC---HHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEecCcccccc-cc-E-EEeCCCC---CHHHHHHHHHHHHHHhCCCCCC
Confidence            35799999999999999999999986  89999997642110 00 0 0000110   001122222         3789


Q ss_pred             EEEEcCCCCCCC----CCc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCC
Q 025075           91 LVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (258)
Q Consensus        91 iVIi~ag~~~~~----g~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP  139 (258)
                      ++|.+||.....    ..+   -...+..|+.-...+.+.+.++- ..+.|+++|..
T Consensus        75 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~  131 (236)
T 1ooe_A           75 GVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAA  131 (236)
T ss_dssp             EEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCG
T ss_pred             EEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECch
Confidence            999999864321    111   12345667666555555555432 24677777653

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=97.60  E-value=5.6e-05  Score=61.65  Aligned_cols=110  Identities=15%  Similarity=0.156  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhC---CCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALT---GMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~---~aDiVIi~   95 (258)
                      |+|.|+||+|++|.+++..|+..    +|++.|+++.....  .++........+   ....++.+.++   +.|+||.+
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~----~V~~~~r~~~~~~~~~~~~~~~~~~~D~---~~~~~~~~~~~~~~~id~vi~~   73 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH----DLLLSGRRAGALAELAREVGARALPADL---ADELEAKALLEEAGPLDLLVHA   73 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS----EEEEECSCHHHHHHHHHHHTCEECCCCT---TSHHHHHHHHHHHCSEEEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC----CEEEEECCHHHHHHHHHhccCcEEEeeC---CCHHHHHHHHHhcCCCCEEEEC
Confidence            47999999999999999999876    79999987542211  112110001111   11123445555   89999999


Q ss_pred             CCCCCCC------CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           96 AGVPRKP------GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~------g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|.....      ..+....+..|+.-...+.+.+.+. +.+.++++|.
T Consensus        74 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~-~~~~iv~~sS  121 (207)
T 2yut_A           74 VGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQ-KGARAVFFGA  121 (207)
T ss_dssp             CCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEE-EEEEEEEECC
T ss_pred             CCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhc-CCcEEEEEcC
Confidence            9865321      1123446677888888888887433 3456666664

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.59  E-value=7.6e-05  Score=63.40  Aligned_cols=111  Identities=13%  Similarity=0.140  Sum_probs=66.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++.     ..+..+.. -+|   +++.+      
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~   77 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELG-----ERSMFVRHDVSSEADWTLVMAAVQRR   77 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHC-----TTEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            345899999999999999999999987  8999998764221  11221     11211111 112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...|++|.+||.....   ..+.   ...+..|+.    ..+.+.+.+++..  +.|+++|.
T Consensus        78 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~--g~iv~isS  138 (253)
T 1hxh_A           78 LGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG--GSIINMAS  138 (253)
T ss_dssp             HCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC--EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC--CEEEEEcc
Confidence             3569999999875321   1122   234555644    5566666666544  67777765

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=97.59  E-value=0.00064  Score=57.44  Aligned_cols=115  Identities=18%  Similarity=0.209  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-----   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+ +....  ...++....  ..+..+.. -+|   +.+.++     
T Consensus         7 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            7 GKVVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  8999998 54321  112222211  12222211 112   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                        +.|+||.+||......   .+.   .+.+..|+.-    .+.+.+.+.+..+.+.||++|.
T Consensus        83 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  145 (261)
T 1gee_A           83 FGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSS  145 (261)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence              7899999998753211   111   2344555443    4445555555443567777764

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=97.58  E-value=0.0011  Score=56.84  Aligned_cols=117  Identities=20%  Similarity=0.281  Sum_probs=69.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------h----hHHHHHhcCCCCCeEEEEeC-CCc--
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------P----GVTADISHMDTGAVVRGFLG-QPQ--   81 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----------~----g~~~dl~~~~~~~~v~~~~~-~~d--   81 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|+++|++..          .    ....++....  ..+..+.. -+|  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~   87 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA--DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRE   87 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHH
Confidence            345799999999999999999999997  8999998721          1    1111121111  12222111 112  


Q ss_pred             -hHhhhC-------CCCEEEEcCCCCCCCCC--chhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           82 -LENALT-------GMDLVIIPAGVPRKPGM--TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        82 -~~~a~~-------~aDiVIi~ag~~~~~g~--~r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                       +++.++       ..|++|.+||.......  +-.+.+..|+.    +.+.+.+.+.+....+.||++|.-
T Consensus        88 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (278)
T 3sx2_A           88 SLSAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSS  159 (278)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccH
Confidence             223333       78999999997532211  11234455544    455555666666656778777653

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=97.58  E-value=0.0006  Score=57.86  Aligned_cols=116  Identities=16%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC----
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT----   87 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~----   87 (258)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.....  .+..+.. -.|   +++.++    
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~   87 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGA--HVVVSSRKQENVDRTVATLQGEGL--SVTGTVCHVGKAEDRERLVAMAVN   87 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEccCCCHHHHHHHHHHHHH
Confidence            3345799999999999999999999997  899999876421  1222322111  2221111 112   223333    


Q ss_pred             ---CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 ---GMDLVIIPAGVPRKPG----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ---~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                         +.|++|.+||.....+    .+.   .+.+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        88 ~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~-~~g~iv~isS  151 (260)
T 2zat_A           88 LHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKR-GGGSVLIVSS  151 (260)
T ss_dssp             HHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEec
Confidence               7999999998643111    111   23455565544    4444445443 3456666664

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.58  E-value=0.00034  Score=59.18  Aligned_cols=154  Identities=17%  Similarity=0.203  Sum_probs=86.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe----CCCchHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL----GQPQLENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~----~~~d~~~a~------   86 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++..     .+..+.    ...++++.+      
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~   77 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA--TVIVSDINAEGAKAAAASIGK-----KARAIAADISDPGSVKALFAEIQAL   77 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCT-----TEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  8999998764221  112211     111111    011222333      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                       ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.|++++....    .       . 
T Consensus        78 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~----~-------~-  145 (247)
T 3rwb_A           78 TGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTF----F-------A-  145 (247)
T ss_dssp             HSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHH----H-------H-
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhh----c-------c-
Confidence             37999999999753221   121   223455554    44555555777665677777764321    0       1 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +.|..-.++.+...-..+-+.+|.+++  +..|++..+
T Consensus       146 ~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  181 (247)
T 3rwb_A          146 GTPNMAAYVAAKGGVIGFTRALATELG--KYNITANAV  181 (247)
T ss_dssp             TCTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchhhHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            133332333332223345666777764  445654433

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=97.57  E-value=0.00081  Score=57.35  Aligned_cols=116  Identities=21%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++...  ..++........+..+. .-+|   +++.++      
T Consensus        13 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           13 DRVVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  8999999764211  12222110011222211 1122   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC----Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g----~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|.+||.....+    .+.   ...+..|+    ...+.+.+.+.+.. .+.||++|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  152 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTAS  152 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcc
Confidence             6899999998753311    111   22345555    34556666666554 456666664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.57  E-value=0.00082  Score=56.34  Aligned_cols=114  Identities=14%  Similarity=0.129  Sum_probs=65.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CC---chHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QP---QLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~---d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++... ....+..+.. -+   +++++++       
T Consensus         3 k~vlItGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (250)
T 2cfc_A            3 RVAIVTGASSGNGLAIATRFLARGD--RVAALDLSAETLEETARTHWHA-YADKVLRVRADVADEGDVNAAIAATMEQFG   79 (250)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHSTT-TGGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh-cCCcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            4789999999999999999999986  8999998754211  1222111 1112222211 11   2333343       


Q ss_pred             CCCEEEEcCCCCCCCC------Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG------MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g------~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +.|+||.++|......      .+.   ...+..|+.-    .+.+.+.+.+.. .+.++++|.
T Consensus        80 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS  142 (250)
T 2cfc_A           80 AIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQG-AGVIVNIAS  142 (250)
T ss_dssp             CCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            7999999998643211      111   2234455543    355555555543 456666654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.56  E-value=0.0015  Score=55.70  Aligned_cols=115  Identities=21%  Similarity=0.284  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++..... ..+..+.. -+|   +++.++       
T Consensus        11 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A           11 RSVVVTGGTKGIGRGIATVFARAGA--NVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4788999999999999999999997  89999998642  22233433221 12222211 122   222232       


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ..|++|.+||......   .+..   ..+..|+.-    .+.+.+.+.+.. .+.||++|..
T Consensus        88 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  148 (262)
T 3pk0_A           88 GIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASG-SGRVVLTSSI  148 (262)
T ss_dssp             CCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHS-SCEEEEECCS
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEech
Confidence            8999999998753221   1222   234556543    444555554444 4566666543

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.56  E-value=0.00026  Score=61.51  Aligned_cols=77  Identities=23%  Similarity=0.274  Sum_probs=46.9

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCC-CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +.|+|+||+|+||+|.+|+.++..+...+-. +|+ .+|++.....-.|+.... ....+   ..+.|+++.++++|+||
T Consensus         3 ~~M~mikV~V~Ga~G~MG~~i~~~l~~~~~~-eLv~~~d~~~~~~~G~d~gel~g~~~gv---~v~~dl~~ll~~~DVVI   78 (272)
T 4f3y_A            3 GSMSSMKIAIAGASGRMGRMLIEAVLAAPDA-TLVGALDRTGSPQLGQDAGAFLGKQTGV---ALTDDIERVCAEADYLI   78 (272)
T ss_dssp             ---CCEEEEESSTTSHHHHHHHHHHHHCTTE-EEEEEBCCTTCTTTTSBTTTTTTCCCSC---BCBCCHHHHHHHCSEEE
T ss_pred             CCccccEEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEEecCcccccccHHHHhCCCCCc---eecCCHHHHhcCCCEEE
Confidence            4466789999997799999999888765543 444 478764311111222111 11112   22467888888999998


Q ss_pred             EcC
Q 025075           94 IPA   96 (258)
Q Consensus        94 i~a   96 (258)
                      -..
T Consensus        79 DfT   81 (272)
T 4f3y_A           79 DFT   81 (272)
T ss_dssp             ECS
T ss_pred             EcC
Confidence            764

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.56  E-value=3.2e-05  Score=66.94  Aligned_cols=64  Identities=11%  Similarity=0.142  Sum_probs=37.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +|||+|||+ |.+|..++..|... +  +| .++|++++....  +... ...      ...++++.++++|+||++.
T Consensus         2 ~m~I~iIG~-G~mG~~la~~l~~~-~--~v~~v~~~~~~~~~~--~~~~-~g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            2 SLVLNFVGT-GTLTRFFLECLKDR-Y--EIGYILSRSIDRARN--LAEV-YGG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             --CCEEESC-CHHHHHHHHTTC-------CCCEECSSHHHHHH--HHHH-TCC------CCCSSCCCCC---CEEECS
T ss_pred             CceEEEEeC-CHHHHHHHHHHHHc-C--cEEEEEeCCHHHHHH--HHHH-cCC------ccCCHHHHHhcCCEEEEeC
Confidence            479999998 99999999888766 4  77 589987643222  2111 111      1234556788999999986

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.56  E-value=0.00058  Score=57.95  Aligned_cols=111  Identities=14%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCC--CchHhhh-------CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQ--PQLENAL-------TGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~a   89 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+... ..++.. .   .+. ...+  .++++++       ...
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~---~~~-~D~~~~~~~~~~~~~~~~~~g~i   78 (256)
T 2d1y_A            6 GKGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGG-A---FFQ-VDLEDERERVRFVEEAAYALGRV   78 (256)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTC-E---EEE-CCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhHHHHHHHhhC-C---EEE-eeCCCHHHHHHHHHHHHHHcCCC
Confidence            35799999999999999999999997  8999999875411 112211 0   111 1111  1222223       378


Q ss_pred             CEEEEcCCCCCCC---CCch---hhHHHHhHHHHHHHH----HHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~---g~~r---~d~~~~n~~i~~~i~----~~i~~~~p~a~viv~tN  138 (258)
                      |++|.+||.....   ..+.   .+.+..|+.-...++    +.+.+. ..+.||++|.
T Consensus        79 D~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS  136 (256)
T 2d1y_A           79 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKV-GGGAIVNVAS  136 (256)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEECC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            9999999875321   1121   234556665444444    444333 3467777664

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=97.55  E-value=0.00048  Score=57.54  Aligned_cols=115  Identities=18%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCChhH--HHHHhcCCCCCeEEEEeCCCc---hHhh-------hC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGV--TADISHMDTGAVVRGFLGQPQ---LENA-------LT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~g~--~~dl~~~~~~~~v~~~~~~~d---~~~a-------~~   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++. +++.....  ..++.........-....-.|   ++++       +.
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   79 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF--ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLG   79 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcC
Confidence            4799999999999999999999987  78887 76643221  122222111111101111122   2222       34


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +.|+||.+||......   .+   -.+.+..|+.-    .+.+.+.+.+.. .+.|+++|.
T Consensus        80 ~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~~sS  139 (245)
T 2ph3_A           80 GLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKAR-FGRIVNITS  139 (245)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcC-CCEEEEEeC
Confidence            7999999998753211   11   12345556555    566666665543 456666664

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.55  E-value=0.00012  Score=61.33  Aligned_cols=115  Identities=17%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QP---QLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~---d~~~a~~------   87 (258)
                      .++|.|+||+|++|.+++..|+..|.  +|++.|++.....  ..++... ....+..+.. -.   +++++++      
T Consensus         7 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (248)
T 2pnf_A            7 GKVSLVTGSTRGIGRAIAEKLASAGS--TVIITGTSGERAKAVAEEIANK-YGVKAHGVEMNLLSEESINKAFEEIYNLV   83 (248)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHH-HCCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhh-cCCceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  8999998754221  1122110 0012221111 11   2333443      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +.|+||.+||......   .+   -.+.+..|+.-.    +.+.+.+.+.. .+.||++|.
T Consensus        84 ~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~~sS  144 (248)
T 2pnf_A           84 DGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQR-WGRIVNISS  144 (248)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence             8999999998754221   11   223456666555    44444444433 356666653

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.55  E-value=0.00051  Score=58.86  Aligned_cols=116  Identities=16%  Similarity=0.149  Sum_probs=64.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhc-CCCCCeEEEEeC-CC---chHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISH-MDTGAVVRGFLG-QP---QLENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~-~~~~~~v~~~~~-~~---d~~~a~~-----   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.++..  ..++.. ......+..+.. -+   +++++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            6 EKVAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  8999998764211  122210 001112222211 11   2334444     


Q ss_pred             --CCCEEEEcCCCCCCCC---C----ch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 --GMDLVIIPAGVPRKPG---M----TR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g---~----~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                        +.|++|.+||......   .    +.   ...+..|+.-    .+.+.+.+.+..  +.||++|..
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~--g~iv~isS~  149 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK--GEIVNISSI  149 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCT
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEecc
Confidence              8999999998643211   1    21   2234555543    344444444433  677777654

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=97.54  E-value=0.00019  Score=61.16  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QP---QLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++........+..+.. -+   +++++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            7 GKLAVVTAGSSGLGFASALELARNGA--RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999987  899999976421  1122221100002221111 11   2333444      


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +.|++|.+||......   .+   -...+..|+.-.    +.+.+.+.+.. .+.||++|.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKG-WGRMVYIGS  144 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECc
Confidence            5999999998653211   11   123445555444    55566555543 456666664

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=97.54  E-value=0.00047  Score=58.99  Aligned_cols=116  Identities=15%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.... ...+..+.    ...+.++.+       .
T Consensus        21 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           21 KRALITGATKGIGADIARAFAAAGA--RLVLSGRDVSELDAARRALGEQF-GTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5789999999999999999999997  899999976421  122222100 11222111    112233333       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+....+.|+++|..
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  159 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASA  159 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcch
Confidence            7999999999754221   111   223445544    455666666666656778777653

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=97.54  E-value=0.00072  Score=57.57  Aligned_cols=114  Identities=15%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch---Hhh-------h
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL---ENA-------L   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++....  ..+..+. .-+|.   .+.       +
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            7 GKVCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45799999999999999999999997  899999876421  122332221  1222211 11222   222       2


Q ss_pred             CCCCEEEEcCCCC-CC-C--CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVP-RK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~-~~-~--g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.+||.. .. +  ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  144 (262)
T 1zem_A           83 GKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQN-YGRIVNTAS  144 (262)
T ss_dssp             SCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence            3789999999865 21 1  1111   2234455543    444444454433 466776664

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.54  E-value=0.00024  Score=59.77  Aligned_cols=112  Identities=13%  Similarity=0.078  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++..     .+..+. .-+|   +++.+       
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   75 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH--QVSMMGRRYQRLQQQELLLGN-----AVIGIVADLAHHEDVDVAFAAAVEWG   75 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcC-----CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            45799999999999999999999997  8999999864221  122211     111111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tN  138 (258)
                      ...|++|.+||.....   ..+.   ...+..|+.-...+++.+...  ...+.|++++.
T Consensus        76 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS  135 (235)
T 3l6e_A           76 GLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGGVLANVLS  135 (235)
T ss_dssp             CSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECC
T ss_pred             CCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence            3679999999974321   1122   234566665554444443322  12246666654

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=97.54  E-value=0.0026  Score=56.83  Aligned_cols=117  Identities=19%  Similarity=0.237  Sum_probs=69.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---------hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENAL-   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-   86 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++.+.         ....++....  ..+..+. .-.|   +++++ 
T Consensus        46 k~vlVTGas~GIG~aia~~La~~Ga--~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           46 CTVFITGASRGIGKAIALKAAKDGA--NIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHH
T ss_pred             CEEEEeCCChHHHHHHHHHHHHCCC--EEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHH
Confidence            4689999999999999999999997  89999998642         1122232221  1222211 1112   22233 


Q ss_pred             ------CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCC
Q 025075           87 ------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVN  141 (258)
Q Consensus        87 ------~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd  141 (258)
                            ...|++|.+||......   .+.   ...+..|+.-...+.+.+..+   ...+.||++|.+..
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~  191 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLN  191 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHH
Confidence                  38999999998743221   121   234566665554444444322   24577888887654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=97.53  E-value=0.00061  Score=58.71  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe----CCCchHhhhC-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL----GQPQLENALT-----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~-----   87 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++++.  ....++.....  .+..+.    ...+.++.++     
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~~~~~~~~~~~~  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA--HVILHGVKPGSTAAVQQRIIASGG--TAQELAGDLSEAGAGTDLIERAEAI  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSTTTTHHHHHHHHHTTC--CEEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCC--eEEEEEecCCCHHHHHHHHHHHHHh
Confidence            345789999999999999999999997  89999998752  22223322211  222111    1112223332     


Q ss_pred             -CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|..||......   .+.   ...+..|+.    +.+.+.+.+.+. ..+.||++|.
T Consensus       108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  168 (275)
T 4imr_A          108 APVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVAR-KWGRVVSIGS  168 (275)
T ss_dssp             SCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECC
Confidence             7899999998743221   122   223455544    445555555544 3567777764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=97.53  E-value=0.0012  Score=56.04  Aligned_cols=158  Identities=11%  Similarity=0.084  Sum_probs=86.7

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEe----CCCchHhhh------
Q 025075           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFL----GQPQLENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~--VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~----~~~d~~~a~------   86 (258)
                      .+++.|+||+|+  +|.+++..|+..|.  +|++.|++... ....++........+..+.    ...++++.+      
T Consensus         7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            7 GRNIVVMGVANKRSIAWGIARSLHEAGA--RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            357999999988  99999999999997  89999987532 2222232211110121111    112233333      


Q ss_pred             -CCCCEEEEcCCCCCC-----C--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHh
Q 025075           87 -TGMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA  154 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~-----~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~  154 (258)
                       ...|++|.+||....     +  ..+.   ...+..|+.-...+.+.+..+- +.+.||++|.....           .
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~  153 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGE-----------L  153 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----------S
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEeccccc-----------c
Confidence             368999999987531     1  1121   2345566666666666666553 35677777653321           1


Q ss_pred             CCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       155 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                       +.|..-.++.+...-..+-+.+++++.  +..|++.++
T Consensus       154 -~~~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~v~~v  189 (266)
T 3oig_A          154 -VMPNYNVMGVAKASLDASVKYLAADLG--KENIRVNSI  189 (266)
T ss_dssp             -CCTTTHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -cCCCcchhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence             122222233332223345666777764  445654444

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.52  E-value=0.00037  Score=58.63  Aligned_cols=155  Identities=17%  Similarity=0.196  Sum_probs=84.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++....  ..++.....  .+..+.. -+|   +++.+       
T Consensus         5 ~k~vlITGas~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            5 EKVALVTGASRGIGFEVAHALASKGA--TVVGTATSQASAEKFENSMKEKGF--KARGLVLNISDIESIQNFFAEIKAEN   80 (247)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  8999999764221  222322211  2222111 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ...|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+. +.+.|+++|....           .. +
T Consensus        81 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS~~~-----------~~-~  147 (247)
T 3lyl_A           81 LAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKK-RWGRIISIGSVVG-----------SA-G  147 (247)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HH-C
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCeEEEEEcchhh-----------cc-C
Confidence            25799999999754321   111   2344555544    34444444443 3467777765322           01 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .|....++.+......+-+.+++++.  +..|++.++
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  182 (247)
T 3lyl_A          148 NPGQTNYCAAKAGVIGFSKSLAYEVA--SRNITVNVV  182 (247)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHH--HcCeEEEEE
Confidence            33333333333333446666777763  345655444

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=97.52  E-value=0.00061  Score=57.41  Aligned_cols=114  Identities=17%  Similarity=0.230  Sum_probs=67.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.++ +++..  ...++....  ..+..+. .-+|   +++.++     
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGA--NVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDV   79 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999987  8999998 54321  112232211  1222111 1112   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                        +.|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        80 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (246)
T 2uvd_A           80 FGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQR-HGRIVNIAS  141 (246)
T ss_dssp             HSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECC
Confidence              7999999999753221   111   2345556554    555666665544 456776664

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.52  E-value=0.00026  Score=60.32  Aligned_cols=115  Identities=15%  Similarity=0.153  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++.... ...+..+. .-+|   +.++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            7 GKVAVITGSSSGIGLAIAEGFAKEGA--HIVLVARQVDRLHEAARSLKEKF-GVRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHHhc-CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  8999998764211  11222110 01122111 1112   233333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +.|++|.+||.....   ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS  144 (263)
T 3ai3_A           84 GGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARG-GGAIIHNAS  144 (263)
T ss_dssp             SSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence             799999999875321   1121   223444544    4445555554443 456776664

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=97.51  E-value=0.0002  Score=62.05  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      .++|.|+||+|++|.+++..|+..|.  +|++.|++....  ...++.... ...+..+.. -.|   +.++++      
T Consensus        26 ~k~vlITGasggiG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           26 GKVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQT-GNKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999987  899999876421  112222110 112222211 112   223333      


Q ss_pred             -CCCEEEEcCCCCCCC---CCc---hhhHHHHhHHHHHHH----HHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i----~~~i~~~~p~a~viv~tN  138 (258)
                       ..|+||.+||.....   ..+   -...+..|+.-...+    .+.+.+....+.++++|.
T Consensus       103 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS  164 (302)
T 1w6u_A          103 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITT  164 (302)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence             459999999864321   111   123455565544444    444433344567776654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.51  E-value=0.00023  Score=60.77  Aligned_cols=111  Identities=18%  Similarity=0.283  Sum_probs=67.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEe-C-C--CchHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFL-G-Q--PQLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~-~-~--~d~~~a~~------   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.+....  .++..     .+..+. . +  .+++++++      
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~~   79 (260)
T 1nff_A            7 GKVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELAD-----AARYVHLDVTQPAQWKAAVDTAVTAF   79 (260)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGG-----GEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhc-----CceEEEecCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999997  89999987642221  12211     111111 1 1  12334444      


Q ss_pred             -CCCEEEEcCCCCCCC---CCch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +.|++|.+||.....   ..+.   .+.+..|+.-.    +.+.+.+.+.. .+.|+++|.
T Consensus        80 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (260)
T 1nff_A           80 GGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAG-RGSIINISS  140 (260)
T ss_dssp             SCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCEEEEEee
Confidence             899999999875321   1121   23455565544    56666665543 456776664

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=97.50  E-value=0.00079  Score=56.55  Aligned_cols=75  Identities=23%  Similarity=0.212  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-CChh--HHHHHhcCCCCCeEEEEeC-CC---chHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-NTPG--VTADISHMDTGAVVRGFLG-QP---QLENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~-~~~g--~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~-----   87 (258)
                      .++|.|+||+|++|.+++..|+..|.  +|++.|++ ....  ...++....  ..+..+.. -.   +++++++     
T Consensus         7 ~k~vlVTGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            7 GKRVLITGSSQGIGLATARLFARAGA--KVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999999987  89999998 4421  122232211  12222211 11   2333444     


Q ss_pred             --CCCEEEEcCCC
Q 025075           88 --GMDLVIIPAGV   98 (258)
Q Consensus        88 --~aDiVIi~ag~   98 (258)
                        +.|+||.+||.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence              89999999986

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=97.50  E-value=0.00079  Score=57.59  Aligned_cols=115  Identities=13%  Similarity=0.189  Sum_probs=67.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHH-HHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTA-DISHMDTGAVVRGFLG-QP---QLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~-dl~~~~~~~~v~~~~~-~~---d~~~a~~------   87 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.... ... .+....  ..+..+.. -.   ++++.++      
T Consensus        34 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           34 GKVASVTGSSGGIGWAVAEAYAQAGA--DVAIWYNSHPADEKAEHLQKTYG--VHSKAYKCNISDPKSVEETISQQEKDF  109 (279)
T ss_dssp             TCEEEETTTTSSHHHHHHHHHHHHTC--EEEEEESSSCCHHHHHHHHHHHC--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            35799999999999999999998887  899999876421 111 121111  12221111 11   2333333      


Q ss_pred             -CCCEEEEcCCCCCC--C---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 -GMDLVIIPAGVPRK--P---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 -~aDiVIi~ag~~~~--~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                       ..|+||.+||....  +   ..+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|..
T Consensus       110 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~~~iv~isS~  173 (279)
T 3ctm_A          110 GTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNG-KGSLIITSSI  173 (279)
T ss_dssp             SCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCC
T ss_pred             CCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCeEEEECch
Confidence             48999999986532  1   1111   2244556554    567777776654 3566666543

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=97.50  E-value=0.00049  Score=58.33  Aligned_cols=114  Identities=6%  Similarity=-0.019  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCCCchHhhh-------CCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENAL-------TGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~aDiV   92 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+... ..++.....  .+..+ ...++++.+       ...|++
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~--~~~~~-d~~~v~~~~~~~~~~~g~iD~l   76 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYP--QLKPM-SEQEPAELIEAVTSAYGQVDVL   76 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCT--TSEEC-CCCSHHHHHHHHHHHHSCCCEE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhcCC--cEEEE-CHHHHHHHHHHHHHHhCCCCEE
Confidence            4689999999999999999999997  8999998764221 122221111  11111 123343333       378999


Q ss_pred             EEcCCCC-CCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           93 IIPAGVP-RKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        93 Ii~ag~~-~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      |.+||.. ....   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|...
T Consensus        77 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~  134 (254)
T 1zmt_A           77 VSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSAT  134 (254)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCST
T ss_pred             EECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECCcc
Confidence            9999975 2211   111   234455554    4445555555443 46777776543

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=97.50  E-value=0.00023  Score=60.63  Aligned_cols=111  Identities=19%  Similarity=0.192  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh-------hCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~aDi   91 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++.+....     ..   .+. ++....+++++       +...|+
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~-----~~---~~~~Dl~d~~~v~~~~~~~~~~~g~iD~   90 (253)
T 2nm0_A           21 SRSVLVTGGNRGIGLAIARAFADAGD--KVAITYRSGEPPEG-----FL---AVKCDITDTEQVEQAYKEIEETHGPVEV   90 (253)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTT-----SE---EEECCTTSHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHhhcc-----ce---EEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            45799999999999999999999997  89999987642110     00   000 00000112222       235799


Q ss_pred             EEEcCCCCCCC------CCchhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKP------GMTRDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~------g~~r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +|..||.....      .++-.+.+..|+.-.    +.+.+.+.+. ..+.||++|....
T Consensus        91 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~  149 (253)
T 2nm0_A           91 LIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRA-KKGRVVLISSVVG  149 (253)
T ss_dssp             EEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCCCC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCEEEEECchhh
Confidence            99999875321      112234556666544    4444444443 3467777765443

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.50  E-value=0.0015  Score=56.00  Aligned_cols=114  Identities=15%  Similarity=0.172  Sum_probs=70.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC------------h--hHHHHHhcCCCCCeEEEEe-CCCc---h
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------------P--GVTADISHMDTGAVVRGFL-GQPQ---L   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~------------~--g~~~dl~~~~~~~~v~~~~-~~~d---~   82 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++..            .  ....++....  ..+..+. .-.|   +
T Consensus        11 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A           11 KVVLVTGGARGQGRSHAVKLAEEGA--DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence            4789999999999999999999997  8999998721            0  1111222211  1222211 1112   2


Q ss_pred             HhhhC-------CCCEEEEcCCCCCCCC-Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           83 ENALT-------GMDLVIIPAGVPRKPG-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        83 ~~a~~-------~aDiVIi~ag~~~~~g-~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      ++.++       ..|++|.+||...... .+   -.+.+..|+.-...+++.+..+- ..+.||++|.
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  154 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGS  154 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEecc
Confidence            22233       7999999999753221 11   23456778777777777776653 4567777764

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=97.49  E-value=0.00028  Score=59.99  Aligned_cols=115  Identities=14%  Similarity=0.130  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++... ..  ..++... ....+..+. .-+|   +++.+       
T Consensus         5 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   81 (260)
T 1x1t_A            5 KVAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQ-HGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHH-HTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHhc-cCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999999987  89999987643 21  1122110 001122111 1112   22333       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|..
T Consensus        82 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  143 (260)
T 1x1t_A           82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASA  143 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCG
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEECcH
Confidence            37999999999753211   121   234555655    4555555555543 4667777643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=97.49  E-value=0.0022  Score=55.09  Aligned_cols=117  Identities=18%  Similarity=0.260  Sum_probs=68.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENALT----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~----   87 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+.. .  ....++.....  .+..+. .-+|   +++.++    
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA--AVALTYVNAAERAQAVVSEIEQAGG--RAVAIRADNRDAEAIEQAIRETVE  105 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999997  8999877653 1  12222322211  222111 1122   233333    


Q ss_pred             ---CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCC
Q 025075           88 ---GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (258)
Q Consensus        88 ---~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP  139 (258)
                         ..|++|.+||......   .+   -...+..|+.-...+++.+.++- ..+.||+++..
T Consensus       106 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~  167 (271)
T 3v2g_A          106 ALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSN  167 (271)
T ss_dssp             HHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCG
T ss_pred             HcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeCh
Confidence               7899999999754221   11   12345667665555555555442 35677777653

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.49  E-value=0.00078  Score=57.27  Aligned_cols=155  Identities=18%  Similarity=0.167  Sum_probs=83.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++....  ..+..+. .-+|   +++.+       
T Consensus        12 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           12 DAVAIVTGAAAGIGRAIAGTFAKAGA--SVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             TCEEEECSCSSHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999987  899999976422  222232221  1222211 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCC--CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           87 TGMDLVIIPAGVPRKP--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~--g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ...|++|.+||.....  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.....           . +.
T Consensus        88 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-~~  154 (256)
T 3gaf_A           88 GKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKA-GGGAILNISSMAGE-----------N-TN  154 (256)
T ss_dssp             SCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGT-----------C-CC
T ss_pred             CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcCHHHc-----------C-CC
Confidence            3789999999875322  1222   2234555544    44444444443 35677777653321           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +..-.++.+......+-+.++++++  +..|++..+
T Consensus       155 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn~v  188 (256)
T 3gaf_A          155 VRMASYGSSKAAVNHLTRNIAFDVG--PMGIRVNAI  188 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHh--hhCcEEEEE
Confidence            2222223332223445666777764  344654444

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.49  E-value=0.0011  Score=56.22  Aligned_cols=156  Identities=13%  Similarity=0.086  Sum_probs=83.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++....  ..+..+.. -+|   +++++       
T Consensus         9 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            9 GCTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHF   84 (260)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45799999999999999999999987  899999876421  122232211  12222211 112   22233       


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHH----HHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTL----CEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i----~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                       ...|++|.+||......   .+   -...+..|+.-...+    .+.+.+. ..+.||++|.....           . 
T Consensus        85 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-  151 (260)
T 2ae2_A           85 HGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGA-----------L-  151 (260)
T ss_dssp             TTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGT-----------S-
T ss_pred             CCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEcchhhc-----------c-
Confidence             57999999999753211   11   123455565544444    4444433 34667777643220           0 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.|..-.++.+......+-+.++++++  +..|++.++.
T Consensus       152 ~~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v~  188 (260)
T 2ae2_A          152 AVPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  188 (260)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            122222223332223445566677663  3456655444

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=97.49  E-value=0.00099  Score=56.51  Aligned_cols=117  Identities=15%  Similarity=0.091  Sum_probs=65.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.....  .+..+.. -.|   +++.+      
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~   88 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSM   88 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--eeEEEECCCCCHHHHHHHHHHHHHH
Confidence            346899999999999999999999987  899999875421  1122322111  2222111 112   22333      


Q ss_pred             --CCCCEEEEcCCCCCCC---CCc---hhhHHHHhHHHHHHHHHHh----hhhCCCcEEEEecCCC
Q 025075           87 --TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV  140 (258)
Q Consensus        87 --~~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i~~~i~~~i----~~~~p~a~viv~tNPv  140 (258)
                        ...|+||.+||.....   ..+   -.+.+..|+.-...+.+.+    .+.. .+.||++|...
T Consensus        89 ~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~-~~~iv~isS~~  153 (266)
T 1xq1_A           89 FGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIA  153 (266)
T ss_dssp             HTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC---
T ss_pred             hCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEccch
Confidence              5789999999864321   112   1234556665544444444    4443 45666666543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.49  E-value=0.00022  Score=59.20  Aligned_cols=69  Identities=20%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-hCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-LTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-~~~aDiVIi~   95 (258)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.+++....  +.... ...+  +.+ .++   +.++ +++||+||++
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~--~v~vid~~~~~~~~--l~~~~-~~~~--i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKY--GVVIINKDRELCEE--FAKKL-KATI--IHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTC--CEEEEESCHHHHHH--HHHHS-SSEE--EESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHH--HHHHc-CCeE--EEcCCCCHHHHHhcCcccCCEEEEe
Confidence            68999998 9999999999999887  89999998653222  22110 0111  111 122   3333 7899999998


Q ss_pred             CC
Q 025075           96 AG   97 (258)
Q Consensus        96 ag   97 (258)
                      .+
T Consensus        73 ~~   74 (218)
T 3l4b_C           73 TP   74 (218)
T ss_dssp             CS
T ss_pred             cC
Confidence            63

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=97.49  E-value=0.0017  Score=54.73  Aligned_cols=113  Identities=18%  Similarity=0.201  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++....  ..+..+.. -+|   +++++       
T Consensus         7 ~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            7 GKVALITGASSGIGEATARALAAEGA--AVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEAL   82 (247)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  899999876421  122232211  12222111 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.+||.....   ..+.   ...+..|+.    +.+.+.+.+.+..  +.||++|.
T Consensus        83 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  142 (247)
T 2jah_A           83 GGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK--GTVVQMSS  142 (247)
T ss_dssp             SCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC--CEEEEEcc
Confidence            3799999999875321   1122   223455554    3444455554444  67777764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.48  E-value=0.0007  Score=56.44  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=49.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCC---chHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQP---QLENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~------   87 (258)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.... ...+..+. .-+   ++.+.++      
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY--ALALGARSVDRLEKIAHELMQEQ-GVEVFYHHLDVSKAESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCeEEEEEeccCCHHHHHHHHHHHHHhc
Confidence            35789999999999999999999997  899999976421  122222110 11222111 111   2233333      


Q ss_pred             -CCCEEEEcCCCCC
Q 025075           88 -GMDLVIIPAGVPR  100 (258)
Q Consensus        88 -~aDiVIi~ag~~~  100 (258)
                       ..|++|.+||...
T Consensus        79 g~id~li~~Ag~~~   92 (235)
T 3l77_A           79 GDVDVVVANAGLGY   92 (235)
T ss_dssp             SSCSEEEECCCCCC
T ss_pred             CCCCEEEECCcccc
Confidence             7899999999753

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=97.48  E-value=0.0003  Score=60.01  Aligned_cols=157  Identities=13%  Similarity=0.142  Sum_probs=86.1

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------C
Q 025075           21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ--PQLENALT-------G   88 (258)
Q Consensus        21 ~KI~IIGa~--G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~   88 (258)
                      +++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++..............+  .++++.++       .
T Consensus        10 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   87 (265)
T 1qsg_A           10 KRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPK   87 (265)
T ss_dssp             CEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCSS
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHCCC--EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            469999998  8999999999999987  8999998762 1122223211101111111111  12223333       6


Q ss_pred             CCEEEEcCCCCCC-----C--C-Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           89 MDLVIIPAGVPRK-----P--G-MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        89 aDiVIi~ag~~~~-----~--g-~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      .|++|.+||....     +  . .+   -...+..|+.-...+++.+.++- +.+.||++|.....           . +
T Consensus        88 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~-----------~-~  155 (265)
T 1qsg_A           88 FDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------R-A  155 (265)
T ss_dssp             EEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------S-B
T ss_pred             CCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhc-----------c-C
Confidence            7999999997542     1  0 11   12356677777777777766543 23677777643220           0 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .|..-.++.+......+-+.++++++  +..|++.++
T Consensus       156 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~v~~v  190 (265)
T 1qsg_A          156 IPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAI  190 (265)
T ss_dssp             CTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            22222333333233445666777764  445654433

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.48  E-value=0.00041  Score=58.59  Aligned_cols=114  Identities=20%  Similarity=0.169  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENALT-------GMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~aD   90 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+....  +.... .........+  .+++++++       ..|
T Consensus         5 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~--~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g~id   79 (245)
T 1uls_A            5 DKAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLRE--AAEAV-GAHPVVMDVADPASVERGFAEALAHLGRLD   79 (245)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHTT-TCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHHc-CCEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            35799999999999999999999987  89999987542211  11110 0111111111  12223333       589


Q ss_pred             EEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           91 LVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      ++|.+||......   .+   -.+.+..|+.-...+++.+.++   ...+.|+++|.
T Consensus        80 ~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS  136 (245)
T 1uls_A           80 GVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTAS  136 (245)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcc
Confidence            9999999753221   11   1234556665554444444332   23466777664

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=97.48  E-value=0.001  Score=56.42  Aligned_cols=114  Identities=13%  Similarity=0.197  Sum_probs=67.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC-----
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GV--TADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++...  ..  ..++....  ..+..+. .-+|   +++.++     
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~   78 (258)
T 3a28_C            3 KVAMVTGGAQGIGRGISEKLAADGF--DIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEK   78 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            4789999999999999999999887  89999987643  21  12232211  1222221 1122   223333     


Q ss_pred             --CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                        ..|++|.+||......   .+.   .+.+..|+.    +.+.+.+.+.+....+.||++|.
T Consensus        79 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS  141 (258)
T 3a28_C           79 LGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAAS  141 (258)
T ss_dssp             HTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECC
T ss_pred             hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECc
Confidence              7999999998753211   111   224455554    44555555555444367777664

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=97.48  E-value=0.00057  Score=58.40  Aligned_cols=145  Identities=12%  Similarity=-0.000  Sum_probs=78.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhh-------CCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENAL-------TGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~aDi   91 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+... ..+.....  .......+  .++++.+       ...|+
T Consensus        28 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~-~~~~~~~~--~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           28 APILITGASQRVGLHCALRLLEHGH--RVIISYRTEHASV-TELRQAGA--VALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESSCCHHH-HHHHHHTC--EEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHH-HHHHhcCC--eEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4689999999999999999999987  8999999875321 11221111  11101111  1122222       37899


Q ss_pred             EEEcCCCCCCCC--Cchh---hHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           92 VIIPAGVPRKPG--MTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        92 VIi~ag~~~~~g--~~r~---d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      +|.+||......  .+..   ..+..|+.-.    +.+.+.+.+. ..+.||++|.....           . +.+..-.
T Consensus       103 lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~-----------~-~~~~~~~  169 (260)
T 3gem_A          103 VVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTAS-EVADIVHISDDVTR-----------K-GSSKHIA  169 (260)
T ss_dssp             EEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGG-----------T-CCSSCHH
T ss_pred             EEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEECChhhc-----------C-CCCCcHh
Confidence            999998753322  2211   2455565443    4444444433 34677777643220           1 1222222


Q ss_pred             EEEeeccHHHHHHHHHHHhCC
Q 025075          163 LGVTMLDVVRANTFVAEVLGL  183 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v  183 (258)
                      ++.+......+-+.+|.+++-
T Consensus       170 Y~asKaa~~~l~~~la~e~~~  190 (260)
T 3gem_A          170 YCATKAGLESLTLSFAARFAP  190 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCC
Confidence            333322234566777787753

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=97.48  E-value=0.00039  Score=59.53  Aligned_cols=36  Identities=17%  Similarity=0.141  Sum_probs=31.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+ +++
T Consensus        11 ~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~   47 (276)
T 1mxh_A           11 CPAAVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSEG   47 (276)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChH
Confidence            35799999999999999999999997  8999998 653

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.48  E-value=0.00023  Score=60.45  Aligned_cols=114  Identities=19%  Similarity=0.201  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCC---chHhhhC-------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENALT-------   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------   87 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++.+....  +.... ...+..+. .-+   +++++++       
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~--~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   78 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAA--TAREL-GDAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHTT-GGGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHH--HHHHh-CCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            345899999999999999999999997  89999987642211  11100 01121111 111   2233333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +.|++|.+||......   .+   -...+..|+.    ..+.+.+.+++.. .+.||++|.
T Consensus        79 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  138 (254)
T 1hdc_A           79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            8999999998753211   11   1234455544    3356666666554 456776664

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=97.48  E-value=0.0012  Score=56.36  Aligned_cols=157  Identities=13%  Similarity=0.144  Sum_probs=86.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHh---hhCCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LEN---ALTGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~---a~~~aDi   91 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++........+..+.. -+|   +++   .+...|+
T Consensus        11 k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A           11 KTALVTGSTAGIGKAIATSLVAEGA--NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            4789999999999999999999997  89999997642  12222322111112222211 112   122   2347999


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           92 VIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        92 VIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +|.+||......   .+.   .+.+..|+.-    .+.+.+.+.+. ..+.||+++.....           . +.+..-
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS~~~~-----------~-~~~~~~  155 (267)
T 3t4x_A           89 LINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIER-KEGRVIFIASEAAI-----------M-PSQEMA  155 (267)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGT-----------S-CCTTCH
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEEcchhhc-----------c-CCCcch
Confidence            999999754321   122   2235556554    55555555543 35667777643321           0 122222


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .++.+......+-+.+|.+++  +..|++..+.
T Consensus       156 ~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  186 (267)
T 3t4x_A          156 HYSATKTMQLSLSRSLAELTT--GTNVTVNTIM  186 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--CCCeEEEEEe
Confidence            222222223456667777764  5566655554

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=97.48  E-value=6.1e-05  Score=63.47  Aligned_cols=111  Identities=13%  Similarity=0.054  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh---------CCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL---------TGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~---------~~aD   90 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|+++..... .. + .....+.   ...++++.+         .+.|
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~-~~-~-~~~~D~~---~~~~v~~~~~~~~~~~~~g~iD   78 (241)
T 1dhr_A            7 ARRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVENEEAS-AS-V-IVKMTDS---FTEQADQVTAEVGKLLGDQKVD   78 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCCTTSS-EE-E-ECCCCSC---HHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCC--EEEEEeCChhhccC-Cc-E-EEEcCCC---CHHHHHHHHHHHHHHhCCCCCC
Confidence            35799999999999999999999987  89999997642110 00 0 0001110   011122222         3789


Q ss_pred             EEEEcCCCCCCC----CCc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           91 LVIIPAGVPRKP----GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~----g~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      ++|.+||.....    ..+   -.+.+..|+.-...+.+.+.++- ..+.|+++|.
T Consensus        79 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS  134 (241)
T 1dhr_A           79 AILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGA  134 (241)
T ss_dssp             EEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECC
Confidence            999999864321    111   12345566665555555544431 2467777764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.47  E-value=0.00059  Score=58.53  Aligned_cols=112  Identities=21%  Similarity=0.170  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--CchHhhhC-------CC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQLENALT-------GM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~a   89 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++. ...  .......+  .++++.++       ..
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~-~~~--~~~~~Dv~~~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           12 KVAIITGACGGIGLETSRVLARAGA--RVVLADLPETDLAGAAASVG-RGA--VHHVVDLTNEVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTSCHHHHHHHHC-TTC--EEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-CCe--EEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999997  899999987522  222221 111  11111111  12233333       79


Q ss_pred             CEEEEcCCCCCC-CC----Cch---hhHHHHhHHHHHHH----HHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRK-PG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~-~g----~~r---~d~~~~n~~i~~~i----~~~i~~~~p~a~viv~tN  138 (258)
                      |++|.+||.... ..    .+.   ...+..|+.-...+    .+.+.+. ..+.|+++|.
T Consensus        87 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS  146 (271)
T 3tzq_B           87 DIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISA-GGGAIVNISS  146 (271)
T ss_dssp             CEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence            999999997522 21    111   23455666544444    4444543 3567777764

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=97.47  E-value=0.0019  Score=55.45  Aligned_cols=116  Identities=17%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------------Ch--hHHHHHhcCCCCCeEEEEe-CCCc--
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------TP--GVTADISHMDTGAVVRGFL-GQPQ--   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-------------~~--g~~~dl~~~~~~~~v~~~~-~~~d--   81 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.             +.  ....++....  ..+..+. .-+|  
T Consensus        15 gk~~lVTGas~gIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           15 GRVAFITGAARGQGRSHAVRLAAEGA--DIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDDA   90 (280)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHH
Confidence            35789999999999999999999997  899999842             11  1111222221  1222211 1112  


Q ss_pred             -hHhhh-------CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           82 -LENAL-------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        82 -~~~a~-------~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                       +++.+       ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSS  166 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcch
Confidence             22222       37899999999753221   121   223445544    455666666666656777777653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=97.47  E-value=0.0011  Score=57.16  Aligned_cols=118  Identities=18%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhh-------CC
Q 025075           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENAL-------TG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~--VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~   88 (258)
                      .++|.|+||+|+  +|.+++..|+..|.  +|++.|++.......++..............+  .++++.+       ..
T Consensus        26 ~k~vlVTGasg~~GIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~  103 (280)
T 3nrc_A           26 GKKILITGLLSNKSIAYGIAKAMHREGA--ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWDG  103 (280)
T ss_dssp             TCEEEECCCCSTTCHHHHHHHHHHHTTC--EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHcCC--EEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            357999999866  99999999999997  89999998732222233222111111111111  1222222       35


Q ss_pred             CCEEEEcCCCCCCC---C-----Cch---hhHHHHhHHHHHHHHHHhhhh--CCCcEEEEecCC
Q 025075           89 MDLVIIPAGVPRKP---G-----MTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP  139 (258)
Q Consensus        89 aDiVIi~ag~~~~~---g-----~~r---~d~~~~n~~i~~~i~~~i~~~--~p~a~viv~tNP  139 (258)
                      .|++|.+||.....   +     .+.   .+.+..|+.-...+++.+..+  ...+.|+++|..
T Consensus       104 id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~  167 (280)
T 3nrc_A          104 LDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYI  167 (280)
T ss_dssp             CCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECG
T ss_pred             CCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecc
Confidence            79999999975321   1     111   224455655444444444332  125677777653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=97.46  E-value=0.00083  Score=57.03  Aligned_cols=116  Identities=21%  Similarity=0.257  Sum_probs=68.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCChh--HHHHHhcCCCCCeEEEEeC-CC---chHhhhC----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPG--VTADISHMDTGAVVRGFLG-QP---QLENALT----   87 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~~g--~~~dl~~~~~~~~v~~~~~-~~---d~~~a~~----   87 (258)
                      +.++|.|+||+|++|.+++..|+..|.  +|++.++ +....  ...++....  ..+..+.. -.   ++.++++    
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~   95 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVS   95 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999987  8999998 43221  112232211  12221111 11   2333444    


Q ss_pred             ---CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 ---GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 ---~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                         +.|+||.++|......   .+.   .+.+..|+.-...+.+.+.++. ..+.||++|.
T Consensus        96 ~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~~sS  156 (274)
T 1ja9_A           96 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS  156 (274)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred             HcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCEEEEEcC
Confidence               8899999998753211   111   3355667766666666555442 1256666654

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.46  E-value=0.0012  Score=56.92  Aligned_cols=113  Identities=13%  Similarity=0.147  Sum_probs=66.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++.+..  ...++....   .+..+.. -+|   +++++       .
T Consensus        30 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           30 RIALVTGGSRGIGQMIAQGLLEAGA--RVFICARDAEACADTATRLSAYG---DCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHTTSS---CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC---ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999987  899999876421  122232211   1221111 112   22223       3


Q ss_pred             CCCEEEEcCCCCCCC---CCc---hhhHHHHhHHH----HHHHHHHhhhhCC---CcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCP---NATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i----~~~i~~~i~~~~p---~a~viv~tN  138 (258)
                      ..|++|.+||.....   ..+   -...+..|+.-    .+.+.+.+.+...   .+.||++|.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS  168 (276)
T 2b4q_A          105 RLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGS  168 (276)
T ss_dssp             CCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECC
Confidence            799999999864321   111   12345556543    4566666655542   167777764

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.46  E-value=0.00011  Score=66.14  Aligned_cols=71  Identities=25%  Similarity=0.273  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEE-EeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++|||+|+|| |+||+.++..|... .  +|.+.|++......  +.+..  ..+.. .....++.+.++++|+||.+++
T Consensus        15 ~~mkilvlGa-G~vG~~~~~~L~~~-~--~v~~~~~~~~~~~~--~~~~~--~~~~~d~~d~~~l~~~~~~~DvVi~~~p   86 (365)
T 3abi_A           15 RHMKVLILGA-GNIGRAIAWDLKDE-F--DVYIGDVNNENLEK--VKEFA--TPLKVDASNFDKLVEVMKEFELVIGALP   86 (365)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHTTT-S--EEEEEESCHHHHHH--HTTTS--EEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CccEEEEECC-CHHHHHHHHHHhcC-C--CeEEEEcCHHHHHH--HhccC--CcEEEecCCHHHHHHHHhCCCEEEEecC
Confidence            3579999998 99999999888754 3  89999987542221  22211  11111 1112245677899999999874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.46  E-value=0.00037  Score=62.16  Aligned_cols=66  Identities=26%  Similarity=0.411  Sum_probs=49.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.+|..++..|...|.  +|..||++.......++   .    +. .   .++++.+++||+|+++..
T Consensus       148 l~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~~~l~~aDvVil~vp  213 (334)
T 2dbq_A          148 VYGKTIGIIGL-GRIGQAIAKRAKGFNM--RILYYSRTRKEEVEREL---N----AE-F---KPLEDLLRESDFVVLAVP  213 (334)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHH---C----CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHhCCC--EEEEECCCcchhhHhhc---C----cc-c---CCHHHHHhhCCEEEECCC
Confidence            34579999998 9999999999988887  89999998754111111   1    11 1   256788999999999874

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.46  E-value=0.00033  Score=58.91  Aligned_cols=111  Identities=15%  Similarity=0.215  Sum_probs=66.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeE-EEEe-CCCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVV-RGFL-GQPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v-~~~~-~~~d---~~~a~------   86 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++..     .+ ..+. .-.|   +++++      
T Consensus        11 ~k~vlITGasggiG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (254)
T 2wsb_A           11 GACAAVTGAGSGIGLEICRAFAASGA--RLILIDREAAALDRAAQELGA-----AVAARIVADVTDAEAMTAAAAEAEAV   83 (254)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcc-----cceeEEEEecCCHHHHHHHHHHHHhh
Confidence            35799999999999999999999987  8999998764211  112211     11 1111 1112   22222      


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .+.|+||.+||......   .+   -.+.+..|+.-    .+.+.+.+.+.. .+.|+++|.
T Consensus        84 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-~~~iv~isS  144 (254)
T 2wsb_A           84 APVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARG-AGAIVNLGS  144 (254)
T ss_dssp             SCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence            47899999998753211   11   12344556554    455555555543 456666664

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=97.46  E-value=0.00047  Score=57.64  Aligned_cols=113  Identities=20%  Similarity=0.263  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEE-EeCCCChhH--HHHHhcCCCCCeEEEEeC-CC---chHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHL-YDVVNTPGV--TADISHMDTGAVVRGFLG-QP---QLENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L-~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~---d~~~a~~------   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++ ++++.....  ..++....  ..+..+.. -+   +++++++      
T Consensus         2 k~vlVTGasggiG~~la~~l~~~G~--~v~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            2 PVVVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAW   77 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4799999999999999999999987  7877 466543211  11222111  12222211 11   2333333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHH----HHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLC----EGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~----~~i~~~~p~a~viv~tN  138 (258)
                       +.|+||.+||......   .+   -.+.+..|+.-...+.    +.+.+. ..+.||++|.
T Consensus        78 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~sS  138 (244)
T 1edo_A           78 GTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIAS  138 (244)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhc-CCCEEEEECC
Confidence             7899999998754321   11   1234555655544444    444333 3466776664

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=97.45  E-value=0.0025  Score=54.76  Aligned_cols=156  Identities=17%  Similarity=0.143  Sum_probs=84.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCC-CCeEEEEeC-CCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT-GAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~-~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++.  ....++..... ...+..+.. -+|   +++.++      
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           12 RTYLVTGGGSGIGKGVAAGLVAAGA--SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999997  89999987642  22233433211 112322211 122   222232      


Q ss_pred             -CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                       ..|++|.+||.....+    .+.   ...+..|+.-.    +...+.+.+ ...+.||++|....           .. 
T Consensus        90 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~-~~~g~iv~isS~~~-----------~~-  156 (281)
T 3svt_A           90 GRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVR-GGGGSFVGISSIAA-----------SN-  156 (281)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCEEEEEECCHHH-----------HS-
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHh-cCCcEEEEEeCHHH-----------cC-
Confidence             6799999998632221    111   23455666544    444444443 34567777764211           11 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +.+..-.++.+......+-+.+|++++  +..|++.++
T Consensus       157 ~~~~~~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v  192 (281)
T 3svt_A          157 THRWFGAYGVTKSAVDHLMQLAADELG--ASWVRVNSI  192 (281)
T ss_dssp             CCTTCTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhh--hcCeEEEEE
Confidence            133333333333333456667777774  344554444

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=97.45  E-value=0.0009  Score=57.69  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=66.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++.+++....  ...++....  ..+..+.. -+|   +++++       
T Consensus        44 ~k~vlITGasggIG~~la~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           44 NKVALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             SCEEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999886  899988765321  122333221  12222211 122   22222       


Q ss_pred             CCCCEEEEcCCCCCCC---CCc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .+.|+||.+||.....   ..+   -.+.+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus       120 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~~iv~isS  180 (285)
T 2c07_A          120 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISS  180 (285)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence            4789999999875321   111   12345556554    455555554443 356666664

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.45  E-value=0.00022  Score=59.50  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=56.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhC------CCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALT------GMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~------~aDiVI   93 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|+++|++.. ..     ...   .+. ++....++.++++      +.|++|
T Consensus         3 k~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~-~~-----~~~---~~~~D~~~~~~~~~~~~~~~~~~~~d~li   71 (242)
T 1uay_A            3 RSALVTGGASGLGRAAALALKARGY--RVVVLDLRRE-GE-----DLI---YVEGDVTREEDVRRAVARAQEEAPLFAVV   71 (242)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC-SS-----SSE---EEECCTTCHHHHHHHHHHHHHHSCEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEccCcc-cc-----ceE---EEeCCCCCHHHHHHHHHHHHhhCCceEEE
Confidence            5899999999999999999999887  8999998764 11     100   000 0000112334444      789999


Q ss_pred             EcCCCCCCCC---C-------chhhHHHHhHHHHHHHHHHhh
Q 025075           94 IPAGVPRKPG---M-------TRDDLFNINAGIVRTLCEGIA  125 (258)
Q Consensus        94 i~ag~~~~~g---~-------~r~d~~~~n~~i~~~i~~~i~  125 (258)
                      .++|......   .       .-.+.+..|+.-...+++.+.
T Consensus        72 ~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~  113 (242)
T 1uay_A           72 SAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAA  113 (242)
T ss_dssp             ECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             EcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHH
Confidence            9998643221   1       123345566655544444443

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=97.44  E-value=0.00082  Score=57.74  Aligned_cols=115  Identities=14%  Similarity=0.195  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--CchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~a   89 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++..............+  .++++.+       ...
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (270)
T 3ftp_A           29 QVAIVTGASRGIGRAIALELARRGA--MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFGAL  106 (270)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            4688899999999999999999997  899999976421  11222221111111111111  1222233       379


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|.+||......   .+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus       107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (270)
T 3ftp_A          107 NVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKA-RGGRIVNITS  164 (270)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            99999998753221   122   22455565544    4444444443 3567777764

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=97.44  E-value=0.0015  Score=55.18  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-------hC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLG-QPQ---LENA-------LT   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~~   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++ +.... ++....  ..+..+.. -+|   ++++       +.
T Consensus         7 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (249)
T 2ew8_A            7 DKLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEA-AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   81 (249)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHH-HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCchhHHHH-HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            35799999999999999999999997  899999987 42221 232211  12222111 122   2222       34


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   .+.+..|+.-    .+.+.+.+++.. .+.||++|.
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  141 (249)
T 2ew8_A           82 RCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  141 (249)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CeEEEEEcc
Confidence            7999999998753211   121   2345556554    455555565544 466776664

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=97.44  E-value=0.002  Score=55.58  Aligned_cols=35  Identities=17%  Similarity=0.168  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.
T Consensus        23 ~k~~lVTGas~gIG~aia~~L~~~G~--~V~~~~r~~   57 (288)
T 2x9g_A           23 APAAVVTGAAKRIGRAIAVKLHQTGY--RVVIHYHNS   57 (288)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHHTC--EEEEEESSC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--eEEEEeCCc
Confidence            35799999999999999999999887  899999987

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=97.44  E-value=0.0015  Score=56.12  Aligned_cols=114  Identities=19%  Similarity=0.139  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-h--HHHHHhcCCCCCeEEEEeC-CCc---hHhh-------h
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-G--VTADISHMDTGAVVRGFLG-QPQ---LENA-------L   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a-------~   86 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++... .  ...++.....  .+..+.. -+|   +.+.       +
T Consensus        30 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~  105 (283)
T 1g0o_A           30 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIF  105 (283)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            5789999999999999999999987  89999987642 1  1122322111  2221111 112   2222       2


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                      ...|++|.+||......   .+   -...+..|+.-...+++.+.++ ...+.||++|.
T Consensus       106 g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  164 (283)
T 1g0o_A          106 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS  164 (283)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEec
Confidence            47899999998753211   11   2334667777666666666655 24567777764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=97.43  E-value=0.00082  Score=56.75  Aligned_cols=158  Identities=14%  Similarity=0.110  Sum_probs=84.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC--
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT--   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D-~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~--   87 (258)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|++.| ++...  ....++.....  .+..+. .-+|   +++.++  
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~   85 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF--RVVAGCGPNSPRRVKWLEDQKALGF--DFYASEGNVGDWDSTKQAFDKV   85 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE--EEEEEECTTCSSHHHHHHHHHHTTC--CCEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--eeEEEecCCCCHHHHHHHHHHH
Confidence            33446899999999999999999999987  788888 44332  22223322211  111111 1112   223333  


Q ss_pred             -----CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHH
Q 025075           88 -----GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (258)
Q Consensus        88 -----~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~  152 (258)
                           ..|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.|+++|.....          
T Consensus        86 ~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS~~~~----------  154 (256)
T 3ezl_A           86 KAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERG-WGRIINISSVNGQ----------  154 (256)
T ss_dssp             HHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCCCGG----------
T ss_pred             HHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcchhhc----------
Confidence                 7899999998754221   121   2345556554    555566565554 4667777764431          


Q ss_pred             HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       153 ~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                       . +.+..-.++.+......+-+.+++++.  +..|++.++
T Consensus       155 -~-~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  191 (256)
T 3ezl_A          155 -K-GQFGQTNYSTAKAGIHGFTMSLAQEVA--TKGVTVNTV  191 (256)
T ss_dssp             -G-SCSCCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             -c-CCCCCcccHHHHHHHHHHHHHHHHHHH--HhCCEEEEE
Confidence             1 133333333332223345666777763  345655444

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.43  E-value=0.00029  Score=59.78  Aligned_cols=113  Identities=15%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCC---chHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQP---QLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++...  ..++..     .+..+. .-+   ++++.++       
T Consensus        10 k~vlITGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A           10 KVALITGAGSGFGEGMAKRFAKGGA--KVVIVDRDKAGAERVAGEIGD-----AALAVAADISKEADVDAAVEAALSKFG   82 (261)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5799999999999999999999997  8999999864221  112211     111111 111   2233333       


Q ss_pred             CCCEEEEcCCCCCCCCC----ch---hhHHHHhHH----HHHHHHHHhhhhC---CCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRKPGM----TR---DDLFNINAG----IVRTLCEGIAKCC---PNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~----~r---~d~~~~n~~----i~~~i~~~i~~~~---p~a~viv~tNPv  140 (258)
                      ..|++|.+||....++.    +.   ...+..|+.    +.+.+.+.+.+..   ..+.|++++...
T Consensus        83 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~  149 (261)
T 3n74_A           83 KVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTG  149 (261)
T ss_dssp             CCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTT
T ss_pred             CCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchh
Confidence            78999999997542221    21   123444543    4566666665543   245677776543

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=97.42  E-value=0.0021  Score=55.75  Aligned_cols=115  Identities=11%  Similarity=0.131  Sum_probs=70.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHH-HhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTAD-ISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~d-l~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  ....+ +....  ..+..+.. -+|   +++.+      
T Consensus        47 gk~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           47 GKNVLITGGDSGIGRAVSIAFAKEGA--NIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQ  122 (291)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            35799999999999999999999997  89999998641  11112 22211  12222211 122   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g----~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       ...|++|.+||.....+    .+   -...+..|+.-...+++.+.++- ..+.||+++.
T Consensus       123 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS  183 (291)
T 3ijr_A          123 LGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTAS  183 (291)
T ss_dssp             HSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECC
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEec
Confidence             37899999998643221    12   13356677777777777766553 3467776664

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=97.42  E-value=0.00032  Score=59.35  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=65.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.... ...+..+.. -.|   +++.+       
T Consensus        14 ~k~vlITGasggiG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   90 (265)
T 1h5q_A           14 NKTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADL   90 (265)
T ss_dssp             TEEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCcchhhHHHHHHHHHhc-CCeeEEEEeeCCCHHHHHHHHHHHHHhc
Confidence            35799999999999999999999986  899999865421  122222110 112222111 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ...|+||.+||......   .+.   ...+..|+.-.    +.+.+.+.+....+.||++|.
T Consensus        91 ~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  152 (265)
T 1h5q_A           91 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  152 (265)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence            34899999998753221   111   22345565444    444444444444466776664

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.42  E-value=0.00048  Score=58.94  Aligned_cols=117  Identities=16%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------G   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------~   88 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++..... .....  ..+..+. .-+|   ++++++       .
T Consensus         6 ~k~vlITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~-~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (263)
T 2a4k_A            6 GKTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAEA-VAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGR   80 (263)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHH-HHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHH-HHHhc--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999997  899999876422111 01111  1222111 1112   222333       5


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN  141 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd  141 (258)
                      .|++|.+||......   .+.   ...+..|+.-...+++.+.++- ..+.||++|....
T Consensus        81 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~  140 (263)
T 2a4k_A           81 LHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAG  140 (263)
T ss_dssp             CCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTT
T ss_pred             CcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchh
Confidence            799999998753211   121   2345667766666666555442 1467777776543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=97.42  E-value=0.0032  Score=54.10  Aligned_cols=115  Identities=16%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--------------hh----HHHHHhcCCCCCeEEEEe-CCCc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--------------PG----VTADISHMDTGAVVRGFL-GQPQ   81 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--------------~g----~~~dl~~~~~~~~v~~~~-~~~d   81 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++..              ..    ...++....  ..+..+. .-+|
T Consensus        12 k~~lVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   87 (286)
T 3uve_A           12 KVAFVTGAARGQGRSHAVRLAQEGA--DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRD   87 (286)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCC
Confidence            4789999999999999999999997  8999998721              11    111122211  1222221 1122


Q ss_pred             ---hHhhh-------CCCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           82 ---LENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        82 ---~~~a~-------~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                         +++.+       ...|++|.+||......    .+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~  166 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV  166 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence               22223       37999999999754322    122   223455544    455556666665556778777653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.42  E-value=0.00027  Score=63.10  Aligned_cols=61  Identities=16%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++.....       .    ...   ..++++.+++||+|+++.
T Consensus       163 ~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~dr~~~~~~-------g----~~~---~~~l~ell~~aDvVil~v  223 (333)
T 3ba1_A          163 SGKRVGIIGL-GRIGLAVAERAEAFDC--PISYFSRSKKPNT-------N----YTY---YGSVVELASNSDILVVAC  223 (333)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTC--CEEEECSSCCTTC-------C----SEE---ESCHHHHHHTCSEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCCchhcc-------C----cee---cCCHHHHHhcCCEEEEec
Confidence            3468999998 9999999999988887  8999998764211       1    111   246778899999999986

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=97.41  E-value=0.0012  Score=56.97  Aligned_cols=115  Identities=12%  Similarity=0.119  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++.....  .+..+. .-+|   +.+.+       .
T Consensus        25 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           25 QTAFVTGVSSGIGLAVARTLAARGI--AVYGCARDAKNVSAAVDGLRAAGH--DVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4689999999999999999999997  89999997642  22223333211  222221 1122   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhh-----hCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAK-----CCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~-----~~p~a~viv~tNP  139 (258)
                      ..|++|.+||......   .+.   .+.+..|+.-...+++.+.+     ....+.||++|..
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~  163 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIAST  163 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCG
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECCh
Confidence            6899999998753221   111   23455666555555554432     1234677777643

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.53  E-value=2.2e-05  Score=65.12  Aligned_cols=93  Identities=14%  Similarity=0.099  Sum_probs=59.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .+.|||+|||+ |.+|+.++..|...|.  +|.++|+++.   ...+...    .+.   .. ++.++++++|+||++..
T Consensus        17 ~~~~~I~iIG~-G~mG~~la~~L~~~G~--~V~~~~r~~~---~~~~~~~----g~~---~~-~~~~~~~~aDvVilav~   82 (201)
T 2yjz_A           17 EKQGVVCIFGT-GDFGKSLGLKMLQCGY--SVVFGSRNPQ---VSSLLPR----GAE---VL-CYSEAASRSDVIVLAVH   82 (201)
Confidence            44579999998 9999999999988876  8999998754   1112111    111   12 44577899999999862


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                          +...+            ++. .+....++.++|.++|...
T Consensus        83 ----~~~~~------------~v~-~l~~~~~~~ivI~~~~G~~  109 (201)
T 2yjz_A           83 ----REHYD------------FLA-ELADSLKGRVLIDVSNNQK  109 (201)
Confidence                21111            111 1222235678888888773

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.40  E-value=0.00077  Score=60.33  Aligned_cols=91  Identities=19%  Similarity=0.292  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||++....       .    ....   ..++++.+++||+|+++... 
T Consensus       171 gktiGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-------~----~~~~---~~sl~ell~~aDvVil~vP~-  232 (340)
T 4dgs_A          171 GKRIGVLGL-GQIGRALASRAEAFGM--SVRYWNRSTLSG-------V----DWIA---HQSPVDLARDSDVLAVCVAA-  232 (340)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCTT-------S----CCEE---CSSHHHHHHTCSEEEECC---
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCcccc-------c----Ccee---cCCHHHHHhcCCEEEEeCCC-
Confidence            469999998 9999999999998887  899999876421       0    1111   24678999999999998621 


Q ss_pred             CCCCCchhhHHHHhHHHH-HHHHHHhhhhCCCcEEEEecC--CCC
Q 025075          100 RKPGMTRDDLFNINAGIV-RTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~-~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                       .+ +++        .++ ++.   +....|++++|+++.  ++|
T Consensus       233 -t~-~t~--------~li~~~~---l~~mk~gailIN~aRG~vvd  264 (340)
T 4dgs_A          233 -SA-ATQ--------NIVDASL---LQALGPEGIVVNVARGNVVD  264 (340)
T ss_dssp             ------------------CHHH---HHHTTTTCEEEECSCC----
T ss_pred             -CH-HHH--------HHhhHHH---HhcCCCCCEEEECCCCcccC
Confidence             11 111        111 223   333458899999863  455

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.40  E-value=0.00043  Score=61.90  Aligned_cols=99  Identities=17%  Similarity=0.259  Sum_probs=58.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---ChhHHHHHhcCCC----CCeEEEEeCCCchHhhh-CCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDT----GAVVRGFLGQPQLENAL-TGM   89 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~---~~g~~~dl~~~~~----~~~v~~~~~~~d~~~a~-~~a   89 (258)
                      +.|+||+|+||+|.+|..+...|...+.+ ++..+....   ..|+.+.-.+..+    ...+...   .+. +++ +++
T Consensus         2 ~~M~kv~IvGatG~vG~~l~~~L~~~p~~-el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~---~~~-~~~~~~~   76 (337)
T 3dr3_A            2 NAMLNTLIVGASGYAGAELVTYVNRHPHM-NITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM---SDI-SEFSPGV   76 (337)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE---SSG-GGTCTTC
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCCC-cEEEEEecCchhhcCCchHHhCccccCccceeEecc---CCH-HHHhcCC
Confidence            34689999999999999999988876544 676665443   3333222111111    1122211   033 345 899


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |+||++.+                ....+++++.+.+.  .+.+|-.|.+
T Consensus        77 Dvvf~a~p----------------~~~s~~~~~~~~~~--g~~vIDlSa~  108 (337)
T 3dr3_A           77 DVVFLATA----------------HEVSHDLAPQFLEA--GCVVFDLSGA  108 (337)
T ss_dssp             SEEEECSC----------------HHHHHHHHHHHHHT--TCEEEECSST
T ss_pred             CEEEECCC----------------hHHHHHHHHHHHHC--CCEEEEcCCc
Confidence            99999864                12235556555443  4566666766

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.40  E-value=0.0006  Score=58.48  Aligned_cols=109  Identities=21%  Similarity=0.218  Sum_probs=63.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++....  .++..      +..+. .-+|   +++.+       
T Consensus         9 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~------~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (270)
T 1yde_A            9 GKVVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPG------AVFILCDVTQEDDVKTLVSETIRRF   80 (270)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTT------EEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC------CeEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  89999987642221  11111      11111 1112   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHHHHH----HHHhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIVRTL----CEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~~~i----~~~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.+||.....+    .+.   ...+..|+.-...+    .+.+.+.  .+.||++|.
T Consensus        81 g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~--~g~iv~isS  141 (270)
T 1yde_A           81 GRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISS  141 (270)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHC--CCEEEEEcC
Confidence            37899999998743211    111   23455565544444    4444333  366776664

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=97.39  E-value=0.00032  Score=59.15  Aligned_cols=112  Identities=14%  Similarity=0.167  Sum_probs=65.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCch---Hh---hhCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---EN---ALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d~---~~---a~~~aDiV   92 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++++..  ++...  . .+..+. .-+|.   ++   .+...|++
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~--~~~~~--~-~~~~~~~D~~~~~~~~~~~~~~~~id~l   78 (246)
T 2ag5_A            6 GKVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKLQ--ELEKY--P-GIQTRVLDVTKKKQIDQFANEVERLDVL   78 (246)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHG--GGGGS--T-TEEEEECCTTCHHHHHHHHHHCSCCSEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HHHhc--c-CceEEEeeCCCHHHHHHHHHHhCCCCEE
Confidence            35799999999999999999999997  8999998753211  11111  0 121111 11222   12   24578999


Q ss_pred             EEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCC
Q 025075           93 IIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        93 Ii~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.|+++|..
T Consensus        79 v~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~-~g~iv~isS~  134 (246)
T 2ag5_A           79 FNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQK-SGNIINMSSV  134 (246)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCS
T ss_pred             EECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEech
Confidence            99998753211   111   2234455543    444444454443 4667777653

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=97.39  E-value=0.0014  Score=56.46  Aligned_cols=113  Identities=18%  Similarity=0.139  Sum_probs=66.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CC---chHhhhCC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QP---QLENALTG------   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~---d~~~a~~~------   88 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++.+...  ..++...   ..+..+.. -+   +++++++.      
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   96 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW--SLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFA   96 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGS
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            5789999999999999999999997  8999999764221  1223221   12221111 11   23334444      


Q ss_pred             -CCEEEEcCCCCCC--C--CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           89 -MDLVIIPAGVPRK--P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 -aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       .|++|.+||....  +  ..+.   ...+..|+.-    .+.+.+.+.+......||++|.
T Consensus        97 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS  158 (272)
T 2nwq_A           97 TLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGS  158 (272)
T ss_dssp             SCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence             4999999997532  1  1111   2234555443    5556666665543326666664

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=97.39  E-value=0.00093  Score=58.86  Aligned_cols=116  Identities=17%  Similarity=0.130  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.....  ..++........+..+. .-+|   +.++++       
T Consensus         9 k~vlVTGas~gIG~~la~~l~~~G~--~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            9 RTAFVTGGANGVGIGLVRQLLNQGC--KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             CEEEEETTTSTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEcCCchHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            4799999999999999999999997  8999999864221  12222111111222211 1112   223333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHH----HHHHHHHHhhhh-----CCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKC-----CPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~----i~~~i~~~i~~~-----~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+   -.+.+..|+.    +++.+.+.+.+.     ...+.|+++|.
T Consensus        87 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS  152 (319)
T 3ioy_A           87 PVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTAS  152 (319)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecc
Confidence            5699999999743211   11   1234455544    445555555443     23567777764

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.39  E-value=0.00032  Score=59.42  Aligned_cols=155  Identities=17%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchHhhhC-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLENALT-------GMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~~a~~-------~aD   90 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++...  ..++.....  .+. ++....++++.++       ..|
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~Dv~d~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGA--KVIGTATSESGAQAISDYLGDNGK--GMALNVTNPESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEE--EEECCTTCHHHHHHHHHHHHHHHCCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcccce--EEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            4789999999999999999999997  8999998764221  112221100  011 0001112223333       799


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           91 LVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      ++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|....           ..+ .|..
T Consensus        86 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~-~g~iv~isS~~~-----------~~~-~~~~  152 (248)
T 3op4_A           86 ILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKR-QGRIINVGSVVG-----------TMG-NAGQ  152 (248)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-CTTC
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhh-----------cCC-CCCC
Confidence            9999999754321   121   224455654    3444555554443 466776664211           111 3333


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      -.++.+...-..+-+.+|++++  +..|++.++-
T Consensus       153 ~~Y~asK~a~~~l~~~la~e~~--~~gi~vn~v~  184 (248)
T 3op4_A          153 ANYAAAKAGVIGFTKSMAREVA--SRGVTVNTVA  184 (248)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH--HhCeEEEEEe
Confidence            3333333223446667777764  4456654443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.38  E-value=0.00061  Score=58.85  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++. .    .+..+. .-+|   +++.+       .
T Consensus        30 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~-~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (277)
T 3gvc_A           30 KVAIVTGAGAGIGLAVARRLADEGC--HVLCADIDGDAADAAATKIG-C----GAAACRVDVSDEQQIIAMVDACVAAFG  102 (277)
T ss_dssp             CEEEETTTTSTHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHC-S----SCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHcC-C----cceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4688999999999999999999997  8999998764221  12221 1    111111 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCC---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKP---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||.....   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.
T Consensus       103 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~Iv~isS  162 (277)
T 3gvc_A          103 GVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIER-GGGAIVNLSS  162 (277)
T ss_dssp             SCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCEEEEEECC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEcc
Confidence            789999999875321   1122   2345556654    44444444443 4567777765

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=97.37  E-value=0.003  Score=52.82  Aligned_cols=117  Identities=15%  Similarity=0.202  Sum_probs=66.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCC-CCCeEEEEeC-CCc---hHhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMD-TGAVVRGFLG-QPQ---LENA------   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~-~~~~v~~~~~-~~d---~~~a------   85 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.... ....+..... ..|   +.+.      
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA--SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            345799999999999999999999997  899999986421  112222211 1111111111 012   1222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC----Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           86 -LTGMDLVIIPAGVPRKPG----MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        86 -~~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +...|++|.+||.....+    .+.   ...+..|+.-.    +.+.+.+.+. ..+.|+++|.
T Consensus        91 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~~~iv~isS  154 (247)
T 3i1j_A           91 EFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRS-EDASIAFTSS  154 (247)
T ss_dssp             HHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTS-SSEEEEEECC
T ss_pred             hCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhC-CCCeEEEEcc
Confidence             237899999998642221    111   22345555444    4444444433 3567777664

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.37  E-value=0.00075  Score=58.57  Aligned_cols=92  Identities=14%  Similarity=0.155  Sum_probs=57.1

Q ss_pred             HHHHhHHhh-cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcC-CCCCeEEEEeCCCc
Q 025075            6 CLRQAKCRA-KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHM-DTGAVVRGFLGQPQ   81 (258)
Q Consensus         6 ~~~~~~~~~-~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~-~~~~~v~~~~~~~d   81 (258)
                      -|.+...+. -.+.+.+++.|+||+|.+|.+++..|+..|.  +|+++|++.++..  ..++... ......-.+....+
T Consensus       104 g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~--~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~  181 (287)
T 1lu9_A          104 AGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDAS  181 (287)
T ss_dssp             HHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHH
T ss_pred             HHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHH
Confidence            355555543 2233446899999779999999999999986  6999999764322  2222211 11111111111123


Q ss_pred             hHhhhCCCCEEEEcCCCC
Q 025075           82 LENALTGMDLVIIPAGVP   99 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~   99 (258)
                      +.+.++++|+||.++|..
T Consensus       182 ~~~~~~~~DvlVn~ag~g  199 (287)
T 1lu9_A          182 RAEAVKGAHFVFTAGAIG  199 (287)
T ss_dssp             HHHHTTTCSEEEECCCTT
T ss_pred             HHHHHHhCCEEEECCCcc
Confidence            556788999999999754

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=97.37  E-value=0.0025  Score=55.41  Aligned_cols=115  Identities=17%  Similarity=0.221  Sum_probs=67.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------h----hHHHHHhcCCCCCeEEEEe-CCCc---h
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------P----GVTADISHMDTGAVVRGFL-GQPQ---L   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----------~----g~~~dl~~~~~~~~v~~~~-~~~d---~   82 (258)
                      +.+.|+||+|.+|.+++..|+..|.  .|+++|+++.          .    ....++....  ..+..+. .-+|   +
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           29 KVAFITGAARGQGRSHAITLAREGA--DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM  104 (299)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence            4688999999999999999999997  8999998721          1    1111222211  1222111 1112   2


Q ss_pred             Hhhh-------CCCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           83 ENAL-------TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        83 ~~a~-------~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ++.+       ...|++|.+||......    .+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~  179 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI  179 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence            2223       37999999998643221    122   234455554    445555555555556778777653

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=97.37  E-value=0.0014  Score=54.84  Aligned_cols=109  Identities=13%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHh-------hhCCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLEN-------ALTGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~-------a~~~aDiV   92 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+. ...++. ..   .+. ++.. .+.++       .+.+.|++
T Consensus         3 k~vlVTGas~giG~~~a~~l~~~G~--~V~~~~r~~~~-~~~~~~-~~---~~~~D~~~-~~~~~~~~~~~~~~g~id~l   74 (239)
T 2ekp_A            3 RKALVTGGSRGIGRAIAEALVARGY--RVAIASRNPEE-AAQSLG-AV---PLPTDLEK-DDPKGLVKRALEALGGLHVL   74 (239)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCHH-HHHHHT-CE---EEECCTTT-SCHHHHHHHHHHHHTSCCEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHhhC-cE---EEecCCch-HHHHHHHHHHHHHcCCCCEE
Confidence            4799999999999999999999987  89999998653 222221 10   010 0111 22222       23489999


Q ss_pred             EEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |.+||......   .+.   .+.+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus        75 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-~g~iv~isS  129 (239)
T 2ekp_A           75 VHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAG-WGRVLFIGS  129 (239)
T ss_dssp             EECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence            99998643211   121   223444544    4455555555443 456776664

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=97.36  E-value=0.001  Score=57.07  Aligned_cols=113  Identities=14%  Similarity=0.179  Sum_probs=66.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++....  ..+..+. .-+|   +++.+       .
T Consensus         5 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            5 KVILITGASGGIGEGIARELGVAGA--KILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  89999987642  1222332221  1222111 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        81 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  140 (264)
T 3tfo_A           81 RIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQR-SGQIINIGS  140 (264)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-CeEEEEEcC
Confidence            7899999999753221   121   223455544    3445555555443 566777764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=97.36  E-value=0.0014  Score=56.11  Aligned_cols=114  Identities=19%  Similarity=0.194  Sum_probs=66.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      .++|.|+||+|.+|.+++..|+..|.  +|++.+++.. ..  ...++....  ..+..+.. -+|   ..+.+      
T Consensus        29 ~k~vlITGas~gIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~  104 (271)
T 4iin_A           29 GKNVLITGASKGIGAEIAKTLASMGL--KVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQS  104 (271)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999997  8999998553 11  111222221  12222211 112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.|+++|.
T Consensus       105 ~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~isS  166 (271)
T 4iin_A          105 DGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSR-FGSVVNVAS  166 (271)
T ss_dssp             HSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             cCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcC-CCEEEEEec
Confidence             37999999999754321   111   233455544    4455555555443 456666653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.35  E-value=0.0016  Score=60.09  Aligned_cols=103  Identities=17%  Similarity=0.130  Sum_probs=67.1

Q ss_pred             HHhHHhhcCC-CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            8 RQAKCRAKGG-AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         8 ~~~~~~~~~~-~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      ..++.|..+. ...++|+|+|. |.+|..++..|...|.  +|..+|+++...... ..+ .    ...    .++++++
T Consensus       198 ldgi~ratg~~L~GktVgIiG~-G~IG~~vA~~Lka~Ga--~Viv~D~~p~~a~~A-~~~-G----~~~----~sL~eal  264 (436)
T 3h9u_A          198 VDGIKRATDVMIAGKTACVCGY-GDVGKGCAAALRGFGA--RVVVTEVDPINALQA-AME-G----YQV----LLVEDVV  264 (436)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHT-T----CEE----CCHHHHT
T ss_pred             HHHHHHhcCCcccCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCChhhhHHH-HHh-C----Cee----cCHHHHH
Confidence            4555555542 23468999998 9999999999998886  899999976322111 111 1    111    2578999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ++||+|+.+.+...-  .++               +.+....|++++++++++.
T Consensus       265 ~~ADVVilt~gt~~i--I~~---------------e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          265 EEAHIFVTTTGNDDI--ITS---------------EHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             TTCSEEEECSSCSCS--BCT---------------TTGGGCCTTEEEEECSSSG
T ss_pred             hhCCEEEECCCCcCc--cCH---------------HHHhhcCCCcEEEEeCCCC
Confidence            999999987542211  010               1234446889999998763

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=97.35  E-value=0.0027  Score=55.21  Aligned_cols=114  Identities=19%  Similarity=0.231  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch---Hhh-------hC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL---ENA-------LT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~---~~a-------~~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.... ...+..+. .-+|.   ++.       +.
T Consensus        42 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           42 RSVLVTGGTKGIGRGIATVFARAGA--NVAVAARSPRELSSVTAELGELG-AGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHTTSS-SSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999997  899999987522  223343321 11222221 11221   222       33


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHH----HHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVR----TLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~----~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.-..    .+.+.+.+.. .+.||+++.
T Consensus       119 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iV~isS  178 (293)
T 3rih_A          119 ALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASG-RGRVILTSS  178 (293)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHS-SCEEEEECC
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEeC
Confidence            6799999998743221   122   234555655444    4444445544 356666654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=97.35  E-value=0.0051  Score=52.93  Aligned_cols=155  Identities=13%  Similarity=0.127  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe----CCCchHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL----GQPQLENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.. .  ....++.....  .+..+.    ...+++++++      
T Consensus        30 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           30 PVAIVTGGRRGIGLGIARALAASGF--DIAITGIGDAEGVAPVIAELSGLGA--RVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCHHHHHHHHHHHHHTTC--CEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--eEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            4688999999999999999999997  8999997442 1  11223332211  222111    1122333343      


Q ss_pred             -CCCEEEEcCCCCC---CC--CCch---hhHHHHhH----HHHHHHHHHhhhhCC--CcEEEEecCCCCCcHHHHHHHHH
Q 025075           88 -GMDLVIIPAGVPR---KP--GMTR---DDLFNINA----GIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFK  152 (258)
Q Consensus        88 -~aDiVIi~ag~~~---~~--g~~r---~d~~~~n~----~i~~~i~~~i~~~~p--~a~viv~tNPvd~~~~i~t~~~~  152 (258)
                       ..|++|.+||...   .+  ..+.   ...+..|+    .+.+.+.+.+.+...  .+.||++|.....          
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~----------  175 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAV----------  175 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------------
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhc----------
Confidence             7899999998731   11  1121   12333454    345666666665542  5677777654331          


Q ss_pred             HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       153 ~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                       . +.|..-.++.+......+-+.+|.+++  +..|++.++
T Consensus       176 -~-~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  212 (280)
T 4da9_A          176 -M-TSPERLDYCMSKAGLAAFSQGLALRLA--ETGIAVFEV  212 (280)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEE
T ss_pred             -c-CCCCccHHHHHHHHHHHHHHHHHHHHH--HhCcEEEEE
Confidence             0 122222223332223445666777763  445665444

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=97.34  E-value=0.0026  Score=54.38  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=85.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-----
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQ---LENAL-----   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-----   86 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|.+...   ....++....  ..+..+. .-+|   +.+.+     
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~   92 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA--KVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVA   92 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999997  88888876531   1122232221  1222221 1122   22223     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           87 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        87 --~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                        ...|++|..||......   .+.   ...+..|+.-...+++.+.++- ..+.||+++.....           ..+.
T Consensus        93 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~-----------~~~~  161 (270)
T 3is3_A           93 HFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSK-----------DFSV  161 (270)
T ss_dssp             HHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTT-----------TCCC
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhc-----------cCCC
Confidence              37899999999753221   122   2345667665555555555543 35677777654421           0012


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~  191 (258)
                      |..-.++.+...-..+-+.++++++  +..|++.
T Consensus       162 ~~~~~Y~asKaa~~~~~~~la~e~~--~~gi~vn  193 (270)
T 3is3_A          162 PKHSLYSGSKGAVDSFVRIFSKDCG--DKKITVN  193 (270)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHhc--ccCeEEE
Confidence            3332333332223445667777774  3445543

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=97.34  E-value=0.0011  Score=57.51  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=31.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D-~~~~   57 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.| ++.+
T Consensus        10 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~~r~~~   45 (291)
T 1e7w_A           10 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAA   45 (291)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--eEEEEcCCCHH
Confidence            4789999999999999999999997  899999 7754

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=97.34  E-value=0.00041  Score=58.79  Aligned_cols=110  Identities=14%  Similarity=0.199  Sum_probs=64.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCC---chHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQP---QLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~---d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ..++..     .+..+. .-+   ++++.++       
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   73 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQERLQELKDELGD-----NLYIAQLDVRNRAAIEEMLASLPAEWC   73 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHTSCTTTC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcC-----ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            3689999999999999999999987  8999998764221  112211     111111 111   2223332       


Q ss_pred             CCCEEEEcCCCCC--CC--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~--~~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||...  .+  ..+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        74 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~-~g~iv~isS  134 (248)
T 3asu_A           74 NIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERN-HGHIINIGS  134 (248)
T ss_dssp             CCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEcc
Confidence            6899999999753  11  1121   234455644    3455555554443 466777764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.34  E-value=0.0015  Score=55.15  Aligned_cols=111  Identities=16%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE-eCCCchHhh---hCCCCEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENA---LTGMDLV   92 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~-~~~~d~~~a---~~~aDiV   92 (258)
                      ..+.++|.|+||+|.+|.+++..|+..|.  +|++.|++++.  ..++.      ....+ ....+.++.   +.+.|++
T Consensus        16 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~--~~~~~------~~~~~~D~~~~~~~~~~~~~~iD~l   85 (249)
T 1o5i_A           16 GIRDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEEL--LKRSG------HRYVVCDLRKDLDLLFEKVKEVDIL   85 (249)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHH--HHHTC------SEEEECCTTTCHHHHHHHSCCCSEE
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHH--HHhhC------CeEEEeeHHHHHHHHHHHhcCCCEE
Confidence            44456899999999999999999999987  89999987521  11121      11111 111233333   3489999


Q ss_pred             EEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |.+||......   .+.   ...+..|+.    ..+.+.+.+.+.. .+.||++|.
T Consensus        86 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  140 (249)
T 1o5i_A           86 VLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  140 (249)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEEcc
Confidence            99998653221   111   223444543    3556666666554 456776664

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.34  E-value=0.00055  Score=60.92  Aligned_cols=66  Identities=18%  Similarity=0.203  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..+||+|||. |.+|+.++..|...|.  +|..||++......  ....    .+..   . ++++.+++||+|+++..
T Consensus       154 ~g~~vgIIG~-G~iG~~iA~~l~~~G~--~V~~~d~~~~~~~~--~~~~----g~~~---~-~l~e~l~~aDvVi~~vp  219 (330)
T 2gcg_A          154 TQSTVGIIGL-GRIGQAIARRLKPFGV--QRFLYTGRQPRPEE--AAEF----QAEF---V-STPELAAQSDFIVVACS  219 (330)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--CEEEEESSSCCHHH--HHTT----TCEE---C-CHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcchhH--HHhc----Ccee---C-CHHHHHhhCCEEEEeCC
Confidence            3469999998 9999999999988887  89999987642221  1111    1111   2 56788999999999874

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.33  E-value=0.00047  Score=59.13  Aligned_cols=112  Identities=23%  Similarity=0.323  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  .|++.|++.+...  ..++..     .+..+. .-+|   +++.+       .
T Consensus        28 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           28 RKALVTGATGGIGEAIARCFHAQGA--IVGLHGTREDKLKEIAADLGK-----DVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCS-----SEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999998764221  112211     122111 1112   22222       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ..|++|.+||......   .+   -.+.+..|+.-    .+.+.+.+.+.. .+.||++|...
T Consensus       101 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~Iv~isS~~  162 (266)
T 3grp_A          101 GIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRR-YGRIINITSIV  162 (266)
T ss_dssp             SCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCC-
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcEEEEECCHH
Confidence            7999999999753211   11   12345556555    566666665543 46677776543

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=97.33  E-value=0.0014  Score=55.48  Aligned_cols=157  Identities=15%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCC-CCeEEEEeC-CCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-GAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~-~~d---~~~a~------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++..... ......... ..|   .++.+      
T Consensus        12 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           12 DRIILVTGASDGIGREAAMTYARYGA--TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            35789999999999999999999997  899999986421  1222221110 111111111 012   22222      


Q ss_pred             -CCCCEEEEcCCCCCC--C--CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHh
Q 025075           87 -TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKA  154 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~  154 (258)
                       ...|++|.+||....  +  ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.....           .
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~-----------~  157 (252)
T 3f1l_A           90 YPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKS-DAGSLVFTSSSVGR-----------Q  157 (252)
T ss_dssp             CSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTS-SSCEEEEECCGGGT-----------S
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHC-CCCEEEEECChhhc-----------c
Confidence             378999999997322  2  1222   2345556544    44444444443 35667766643321           0


Q ss_pred             CCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          155 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       155 ~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                       +.+..-.++.+......+-+.+|++++  +. |++-.+.
T Consensus       158 -~~~~~~~Y~asK~a~~~l~~~la~e~~--~~-irvn~v~  193 (252)
T 3f1l_A          158 -GRANWGAYAASKFATEGMMQVLADEYQ--QR-LRVNCIN  193 (252)
T ss_dssp             -CCTTCHHHHHHHHHHHHHHHHHHHHTT--TT-CEEEEEE
T ss_pred             -CCCCCchhHHHHHHHHHHHHHHHHHhc--CC-cEEEEEe
Confidence             122222222222223456677788875  33 6554443

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.33  E-value=0.00066  Score=60.18  Aligned_cols=130  Identities=18%  Similarity=0.192  Sum_probs=74.6

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh--CCCCEEEE
Q 025075           18 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVII   94 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVIi   94 (258)
                      +.++||.|||. |..|.+ +|..|..+|.  +|..+|.+........|....    +....+ .+. +.+  .++|+||.
T Consensus         2 ~~~~~i~~iGi-Gg~Gms~~A~~L~~~G~--~V~~~D~~~~~~~~~~L~~~g----i~v~~g-~~~-~~l~~~~~d~vV~   72 (326)
T 3eag_A            2 NAMKHIHIIGI-GGTFMGGLAAIAKEAGF--EVSGCDAKMYPPMSTQLEALG----IDVYEG-FDA-AQLDEFKADVYVI   72 (326)
T ss_dssp             -CCCEEEEESC-CSHHHHHHHHHHHHTTC--EEEEEESSCCTTHHHHHHHTT----CEEEES-CCG-GGGGSCCCSEEEE
T ss_pred             CCCcEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEcCCCCcHHHHHHHhCC----CEEECC-CCH-HHcCCCCCCEEEE
Confidence            35679999998 999996 8888999998  999999876422222343322    222223 333 345  48999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhh-hCCCcEEEEec--CCCCCcHHHHHHHHHHhCCCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLIS--NPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~-~~p~a~viv~t--NPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      +.|+|...- .-....+++++++.++ +.+.+ ...+..+|-+|  |==.+.+.+++++++..+ +++
T Consensus        73 Spgi~~~~p-~~~~a~~~gi~v~~~~-e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g-~~~  137 (326)
T 3eag_A           73 GNVAKRGMD-VVEAILNLGLPYISGP-QWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG-LAP  137 (326)
T ss_dssp             CTTCCTTCH-HHHHHHHTTCCEEEHH-HHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT-CCC
T ss_pred             CCCcCCCCH-HHHHHHHcCCcEEeHH-HHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC-CCc
Confidence            988864321 1112223444444332 12222 12233444454  444456667777777654 444

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.33  E-value=0.001  Score=60.18  Aligned_cols=71  Identities=21%  Similarity=0.460  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++||+||||+|.+|..+...|...++ ..+|.++......|+...+..    ..+....  .+ .+.++++|+||++.|
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~----~~~~~~~--~~-~~~~~~~Dvvf~a~~   73 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKD----QDITIEE--TT-ETAFEGVDIALFSAG   73 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETT----EEEEEEE--CC-TTTTTTCSEEEECSC
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecC----CCceEee--CC-HHHhcCCCEEEECCC
Confidence            47999999999999999998888643 347888875544343332211    1222111  12 245789999999875

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=97.33  E-value=0.0027  Score=54.40  Aligned_cols=115  Identities=20%  Similarity=0.242  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------------Ch--hHHHHHhcCCCCCeEEEEe-CCCc---
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------TP--GVTADISHMDTGAVVRGFL-GQPQ---   81 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-------------~~--g~~~dl~~~~~~~~v~~~~-~~~d---   81 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.             +.  ....++....  ..+..+. .-+|   
T Consensus        12 k~~lVTGas~GIG~a~a~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A           12 RVAFITGAARGQGRAHAVRMAAEGA--DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFDR   87 (277)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHcCC--EEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            4789999999999999999999997  899999841             11  1111222211  1222111 1122   


Q ss_pred             hHhhh-------CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           82 LENAL-------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        82 ~~~a~-------~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +++.+       ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+..+.+.||++|..
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~  162 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSA  162 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccH
Confidence            22222       36899999999754321   122   223445543    556666667776666778877653

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.33  E-value=0.00052  Score=59.23  Aligned_cols=110  Identities=16%  Similarity=0.238  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCC---chHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQP---QLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~---d~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++...  ..++..     .+..+. .-+   ++++.+       .
T Consensus        28 k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (277)
T 4dqx_A           28 RVCIVTGGGSGIGRATAELFAKNGA--YVVVADVNEDAAVRVANEIGS-----KAFGVRVDVSSAKDAESMVEKTTAKWG  100 (277)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHCT-----TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999997  8999998764221  111111     111111 111   222223       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus       101 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-~~g~iv~isS  160 (277)
T 4dqx_A          101 RVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRN-GGGSIINTTS  160 (277)
T ss_dssp             CCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT-TCEEEEEECC
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECc
Confidence            7899999999743211   121   23445565544    4444444433 3467777764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=97.32  E-value=0.0034  Score=52.79  Aligned_cols=155  Identities=17%  Similarity=0.212  Sum_probs=83.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|.+.. .  ....++.....  .+..+. .-+|   +++.++      
T Consensus         5 k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~   80 (246)
T 3osu_A            5 KSALVTGASRGIGRSIALQLAEEGY--NVAVNYAGSKEKAEAVVEEIKAKGV--DSFAIQANVADADEVKAMIKEVVSQF   80 (246)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTS--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4788999999999999999999997  8888887542 1  11222322211  222111 1112   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                       ..|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.-..           ..+ 
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~iv~isS~~~-----------~~~-  147 (246)
T 3osu_A           81 GSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQR-SGAIINLSSVVG-----------AVG-  147 (246)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEEcchhh-----------cCC-
Confidence             7899999998753221   122   2245556554    444444445443 456666654111           111 


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .|+.-.++.+......+-+.+|++++  +..|++.++.
T Consensus       148 ~~~~~~Y~~sK~a~~~~~~~la~e~~--~~gi~vn~v~  183 (246)
T 3osu_A          148 NPGQANYVATKAGVIGLTKSAARELA--SRGITVNAVA  183 (246)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHhc--ccCeEEEEEE
Confidence            33333333333333456667777764  3456654443

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.32  E-value=0.0029  Score=54.09  Aligned_cols=116  Identities=15%  Similarity=0.168  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL------   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~------   86 (258)
                      +.+++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++.... ...+..+. .-+|   +++++      
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            345799999999999999999999997  899999876421  112221100 01122111 1112   22233      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...|++|.+||......   .+.   ...+..|+.-.    +.+.+.+.+. ..+.||++|.
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS  158 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRES-DNPSIINIGS  158 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-SSCEEEEECC
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCcEEEEECC
Confidence             37899999999754221   111   23445565544    4444444443 2456666654

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.32  E-value=0.00055  Score=59.22  Aligned_cols=82  Identities=10%  Similarity=0.156  Sum_probs=55.3

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      |.+...+.--..+.+||+|||+ |.+|.+++..|...|.  +|.++|++.++..  ++....   .+..   ..++.+.+
T Consensus       116 ~~~~l~~~~~~~~~~~v~iiGa-G~~g~aia~~L~~~g~--~V~v~~r~~~~~~--~l~~~~---g~~~---~~~~~~~~  184 (275)
T 2hk9_A          116 FLKSLKSLIPEVKEKSILVLGA-GGASRAVIYALVKEGA--KVFLWNRTKEKAI--KLAQKF---PLEV---VNSPEEVI  184 (275)
T ss_dssp             HHHHHHHHCTTGGGSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSHHHHH--HHTTTS---CEEE---CSCGGGTG
T ss_pred             HHHHHHHhCCCcCCCEEEEECc-hHHHHHHHHHHHHcCC--EEEEEECCHHHHH--HHHHHc---CCee---ehhHHhhh
Confidence            4444443222334469999998 9999999999988886  8999998754322  233221   1221   22566788


Q ss_pred             CCCCEEEEcCCCC
Q 025075           87 TGMDLVIIPAGVP   99 (258)
Q Consensus        87 ~~aDiVIi~ag~~   99 (258)
                      +++|+||++...+
T Consensus       185 ~~aDiVi~atp~~  197 (275)
T 2hk9_A          185 DKVQVIVNTTSVG  197 (275)
T ss_dssp             GGCSEEEECSSTT
T ss_pred             cCCCEEEEeCCCC
Confidence            9999999997544

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=97.32  E-value=0.0036  Score=53.09  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=67.7

Q ss_pred             CCeEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh------
Q 025075           20 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G-~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~------   86 (258)
                      .+++.|+||+| .+|.+++..|+..|.  +|++.|++...  ....++.... ...+..+.. -+|   +++.+      
T Consensus        22 ~k~vlITGasg~GIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           22 GKVVLVTAAAGTGIGSTTARRALLEGA--DVVISDYHERRLGETRDQLADLG-LGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TCEEEESSCSSSSHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTC-SSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCchHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC-CCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            35789999877 599999999999997  89999998642  1222332221 112322221 112   22223      


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+....+.|++++.
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS  161 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNAS  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECC
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence             36799999999754321   122   223444543    44555555555445677777764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.31  E-value=0.0029  Score=55.05  Aligned_cols=114  Identities=15%  Similarity=0.220  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCC-CCeEEEEeC-CCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-GAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++.|++.+..  ...++..... ...+..+.. -+|   ++++++      
T Consensus        27 k~vlVTGas~gIG~aia~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           27 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            5789999999999999999999997  899999976422  1122322110 001222111 112   223333      


Q ss_pred             -CCCEEEEcCCCCCCCC-----Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG-----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g-----~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|.+||......     .+.   ...+..|+.-    .+.+.+.+.+..  +.||++|.
T Consensus       105 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~--g~IV~isS  166 (297)
T 1xhl_A          105 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK--GEIVNVSS  166 (297)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--CEEEEECC
T ss_pred             CCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC--CEEEEEcC
Confidence             7899999998643221     111   2244555543    444444444333  67777764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=97.31  E-value=0.0023  Score=54.19  Aligned_cols=114  Identities=12%  Similarity=0.089  Sum_probs=67.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++....  ..+..+.. -+|   +++.++      
T Consensus         7 ~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g   82 (252)
T 3h7a_A            7 NATVAVIGAGDYIGAEIAKKFAAEGF--TVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHA   82 (252)
T ss_dssp             SCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhC
Confidence            35799999999999999999999997  899999987532  222332221  12222211 112   233333      


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|.
T Consensus        83 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-~g~iv~isS  142 (252)
T 3h7a_A           83 PLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHG-QGKIFFTGA  142 (252)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             CceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECC
Confidence            6799999999754221   121   223445543    4455566666554 466666654

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.30  E-value=0.0013  Score=56.40  Aligned_cols=155  Identities=10%  Similarity=0.130  Sum_probs=84.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC----CCchHhhhC-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG----QPQLENALT-------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~-------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++.....  .+..+..    ..++.+.++       
T Consensus        27 k~~lVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           27 RTALVTGSSRGLGRAMAEGLAVAGA--RILINGTDPSRVAQTVQEFRNVGH--DAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHHHTTC--CEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            4788999999999999999999997  89999987642  22223332211  1221110    112233333       


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|.+||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||+++.....           . +.
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iV~isS~~~~-----------~-~~  169 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRG-YGKIVNIGSLTSE-----------L-AR  169 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------S-BC
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEccHHhC-----------C-CC
Confidence            7999999999753221   122   223555554    3444555555443 4667776643221           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +..-.++.+...-..+-+.+|.+++  +..|++-.+.
T Consensus       170 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v~  204 (271)
T 4ibo_A          170 ATVAPYTVAKGGIKMLTRAMAAEWA--QYGIQANAIG  204 (271)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHh--hhCeEEEEEE
Confidence            2222223332223456666777764  4456654443

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=97.30  E-value=0.00073  Score=57.69  Aligned_cols=106  Identities=18%  Similarity=0.166  Sum_probs=63.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe----CCCchHhhh-------CCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL----GQPQLENAL-------TGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~----~~~d~~~a~-------~~a   89 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.|++.......         .+..+.    ...++++.+       ...
T Consensus        29 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~---------~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   97 (260)
T 3un1_A           29 KVVVITGASQGIGAGLVRAYRDRNY--RVVATSRSIKPSADP---------DIHTVAGDISKPETADRIVREGIERFGRI   97 (260)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCCCCSST---------TEEEEESCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChhhcccC---------ceEEEEccCCCHHHHHHHHHHHHHHCCCC
Confidence            4789999999999999999999997  899999876421100         111110    011222223       389


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|.+||......   .+.   ...+..|+.-.    +...+.+.+.. .+.++++|.
T Consensus        98 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS  155 (260)
T 3un1_A           98 DSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQG-SGHIVSITT  155 (260)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECC
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEEec
Confidence            99999999754221   111   23445565444    44444445443 456666654

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.29  E-value=0.0026  Score=54.40  Aligned_cols=115  Identities=13%  Similarity=0.079  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++++..  ...++.....  .+..+.. -.|   +++++       
T Consensus        21 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           21 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGL--NVEGSVCDLLSRTERDKLMQTVAHVF   96 (273)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--ceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            35799999999999999999999997  899999976421  1122322111  2221111 112   22222       


Q ss_pred             -CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCC
Q 025075           87 -TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                       ...|++|.+||......   .+.   ...+..|+.-    .+.+.+.+++.. .+.||++|..
T Consensus        97 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS~  159 (273)
T 1ae1_A           97 DGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQ-NGNVIFLSSI  159 (273)
T ss_dssp             TSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-SEEEEEECCG
T ss_pred             CCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcCH
Confidence             57999999998753211   121   2234455543    444444444443 4667777653

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=97.29  E-value=0.0077  Score=51.87  Aligned_cols=117  Identities=15%  Similarity=0.180  Sum_probs=70.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---------hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++...         ....++....  ..+..+. .-+|   +++.++
T Consensus        10 k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~   85 (285)
T 3sc4_A           10 KTMFISGGSRGIGLAIAKRVAADGA--NVALVAKSAEPHPKLPGTIYTAAKEIEEAG--GQALPIVGDIRDGDAVAAAVA   85 (285)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHTTTC--EEEEEESCCSCCSSSCCCHHHHHHHHHHHT--SEEEEEECCTTSHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECChhhhhhhhHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHH
Confidence            4789999999999999999999987  89999998641         1112222211  1222221 1112   222333


Q ss_pred             -------CCCEEEEcCCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecCCCC
Q 025075           88 -------GMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVN  141 (258)
Q Consensus        88 -------~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tNPvd  141 (258)
                             ..|++|.+||.....   ..+.   ...+..|+.-...+.+.+.++   ...+.||++|....
T Consensus        86 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~  155 (285)
T 3sc4_A           86 KTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIR  155 (285)
T ss_dssp             HHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCC
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhh
Confidence                   899999999975321   1122   234556776666666655544   23567887876443

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.28  E-value=0.0014  Score=56.24  Aligned_cols=115  Identities=14%  Similarity=0.165  Sum_probs=65.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCC-CCeEEEEeC-CCc---hHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDT-GAVVRGFLG-QPQ---LENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~-~~~v~~~~~-~~d---~~~a~~-----   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++..... ...+..+.. -+|   ++++++     
T Consensus         6 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            6 NKTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            35799999999999999999999987  899999876422  1222322111 002222211 122   222332     


Q ss_pred             --CCCEEEEcCCCCCCCC-------Cch---hhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecC
Q 025075           88 --GMDLVIIPAGVPRKPG-------MTR---DDLFNINAGIV----RTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 --~aDiVIi~ag~~~~~g-------~~r---~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tN  138 (258)
                        ..|++|.+||......       .+.   .+.+..|+.-.    +.+.+.+.+..  +.||++|.
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  148 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK--GEIVNVSS  148 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC--CcEEEecC
Confidence              6899999998753211       111   22345555444    44444444333  67777764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.28  E-value=0.0005  Score=59.51  Aligned_cols=113  Identities=17%  Similarity=0.053  Sum_probs=71.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhhhC---CCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENALT---GMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~---~aDiV   92 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++..+...  +.... ...+..+.. -+|   +.++++   ..|++
T Consensus        16 gk~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~--~~~~~-~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~l   90 (291)
T 3rd5_A           16 QRTVVITGANSGLGAVTARELARRGA--TVIMAVRDTRKGEA--AARTM-AGQVEVRELDLQDLSSVRRFADGVSGADVL   90 (291)
T ss_dssp             TCEEEEECCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHTTS-SSEEEEEECCTTCHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHHh-cCCeeEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            45799999999999999999999997  89999997643221  11111 112322221 122   333444   56999


Q ss_pred             EEcCCCCCCCC----CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKPG----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g----~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |.+||....+.    +.-...+..|+.-...+++.+.+.-.+ .||++|.
T Consensus        91 v~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS  139 (291)
T 3rd5_A           91 INNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSS  139 (291)
T ss_dssp             EECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECC
T ss_pred             EECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeec
Confidence            99999753221    122346777887777777777765433 4555554

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.27  E-value=0.00099  Score=60.31  Aligned_cols=70  Identities=19%  Similarity=0.323  Sum_probs=45.1

Q ss_pred             CeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCChhHHH-HHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~-~L~~~~~-~~ei~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|+||+|.+|+-+.. .|.++++ ..++.++.... .|... ++...  ...+.  . .++. +.++++|+||++.|
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~~~--~-~~~~-~~~~~~Dvvf~a~~   73 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQ-IGVPAPNFGKD--AGMLH--D-AFDI-ESLKQLDAVITCQG   73 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCCSSSC--CCBCE--E-TTCH-HHHTTCSEEEECSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccc-cCcCHHHhCCC--ceEEE--e-cCCh-hHhccCCEEEECCC
Confidence            689999999999999998 8877764 24888776543 33221 22111  11222  1 1233 45899999999875

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=97.27  E-value=0.004  Score=53.47  Aligned_cols=114  Identities=16%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEe-CCCchH---hh------hCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQLE---NA------LTG   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~-~~~d~~---~a------~~~   88 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|+++. .....++....  ..+..+. .-+|.+   +.      +..
T Consensus        31 gk~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           31 GRTAVVTGAGSGIGRAIAHGYARAGA--HVLAWGRTDGVKEVADEIADGG--GSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTHHHHHHHHHHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            45799999999999999999999997  8999996543 22222333221  1222221 112221   11      137


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus       107 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS  165 (273)
T 3uf0_A          107 VDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHG-SGRIVTIAS  165 (273)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CCEEEEEcc
Confidence            899999999754221   111   2244556544    444555555544 466777764

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.25  E-value=0.0011  Score=60.19  Aligned_cols=71  Identities=15%  Similarity=0.292  Sum_probs=45.7

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~-~L~~~~~-~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ++||+||||+|.+|+-+.. .|.++++ ..++.++.... .|.. .++...  ...+.  . .++. +.++++|+||++.
T Consensus         4 ~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~-aG~~~~~~~~~--~~~v~--~-~~~~-~~~~~vDvvf~a~   76 (377)
T 3uw3_A            4 SMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSN-AGGKAPSFAKN--ETTLK--D-ATSI-DDLKKCDVIITCQ   76 (377)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSC-TTSBCCTTCCS--CCBCE--E-TTCH-HHHHTCSEEEECS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechh-cCCCHHHcCCC--ceEEE--e-CCCh-hHhcCCCEEEECC
Confidence            3799999999999999998 7777764 24888876542 2322 122211  11222  1 1232 4578999999987


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      |
T Consensus        77 ~   77 (377)
T 3uw3_A           77 G   77 (377)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=97.25  E-value=0.0013  Score=56.31  Aligned_cols=112  Identities=11%  Similarity=0.141  Sum_probs=64.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhh-------hCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENA-------LTG   88 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a-------~~~   88 (258)
                      +.+.++|.|+||+|.+|.+++..|+..|.  +|++.|++.....    ....   .+. ++....++.+.       +..
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~----~~~~---~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA--KVVSVSLDEKSDV----NVSD---HFKIDVTNEEEVKEAVEKTTKKYGR   81 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCC--CT----TSSE---EEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCchhcc----Ccee---EEEecCCCHHHHHHHHHHHHHHcCC
Confidence            44456899999999999999999999997  8999998764211    0000   010 00001112222       337


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  140 (269)
T 3vtz_A           82 IDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIG-HGSIINIAS  140 (269)
T ss_dssp             CCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CCEEEEECc
Confidence            999999999753221   111   2234455543    444555554443 466776664

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=97.25  E-value=0.0011  Score=55.92  Aligned_cols=108  Identities=17%  Similarity=0.216  Sum_probs=63.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ--PQLENALT-------GMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~aD   90 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+.      ...  .........+  .+++++++       ..|
T Consensus         7 ~k~vlVTGas~giG~~ia~~l~~~G~--~V~~~~r~~~~------~~~--~~~~~~~D~~d~~~~~~~~~~~~~~~g~id   76 (250)
T 2fwm_X            7 GKNVWVTGAGKGIGYATALAFVEAGA--KVTGFDQAFTQ------EQY--PFATEVMDVADAAQVAQVCQRLLAETERLD   76 (250)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCCCS------SCC--SSEEEECCTTCHHHHHHHHHHHHHHCSCCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCchhh------hcC--CceEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence            35799999999999999999999997  89999987641      000  0011101111  12233333       789


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           91 LVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ++|.+||......   .+.   .+.+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        77 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-~g~iv~isS  133 (250)
T 2fwm_X           77 ALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQR-GGAIVTVAS  133 (250)
T ss_dssp             EEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcC-CCEEEEECc
Confidence            9999998743211   121   2344555543    444455555543 456666654

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=97.24  E-value=0.0037  Score=53.93  Aligned_cols=156  Identities=18%  Similarity=0.197  Sum_probs=84.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.....  .+..+. .-+|   +++++       .
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           29 PVALITGAGSGIGRATALALAADGV--TVGALGRTRTEVEEVADEIVGAGG--QAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHTTTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4688999999999999999999997  899999876422  2223332211  222211 1112   22223       3


Q ss_pred             CCCEEEEcCCCCCC--C--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 ~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ..|++|.+||....  +  ..+.   ...+..|+.    +.+.+.+.+++.. .+.||++|.-....          ..+
T Consensus       105 ~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~Iv~isS~~~~~----------~~~  173 (283)
T 3v8b_A          105 HLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRG-GGAIVVVSSINGTR----------TFT  173 (283)
T ss_dssp             CCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSBTTT----------BCC
T ss_pred             CCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CceEEEEcChhhcc----------CCC
Confidence            79999999997432  2  1222   234555654    4445555555543 56677776533210          001


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .|..-.++.+......+-+.+|.+++  +..|++-++
T Consensus       174 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  208 (283)
T 3v8b_A          174 TPGATAYTATKAAQVAIVQQLALELG--KHHIRVNAV  208 (283)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHTT--TTTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHhC--ccCcEEEEE
Confidence            12222222322223456677777764  455665444

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=97.24  E-value=0.0036  Score=54.96  Aligned_cols=115  Identities=16%  Similarity=0.212  Sum_probs=67.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------hhH----HHHHhcCCCCCeEEEEe-CCCc---h
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGV----TADISHMDTGAVVRGFL-GQPQ---L   82 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----------~g~----~~dl~~~~~~~~v~~~~-~~~d---~   82 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|+++|++..          ...    ...+....  ..+..+. .-+|   +
T Consensus        47 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           47 KVAFITGAARGQGRTHAVRLAQDGA--DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLASL  122 (317)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--eEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHH
Confidence            4688999999999999999999997  8999998621          111    11121111  1222211 1112   2


Q ss_pred             Hhhh-------CCCCEEEEcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           83 ENAL-------TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        83 ~~a~-------~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ++.+       ...|++|..||.....   ..+.   ...+..|+.    +.+.+.+.+.+....+.||++|..
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~  196 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST  196 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence            2223       3789999999875321   1122   223455544    445566666665556778777653

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=97.23  E-value=0.0028  Score=54.57  Aligned_cols=76  Identities=16%  Similarity=0.132  Sum_probs=49.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCch----Hhh-------h
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQL----ENA-------L   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d~----~~a-------~   86 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+++..+  ....++.... ...+..+.. -+|.    .+.       +
T Consensus        13 k~vlITGas~GIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           13 RCAVVTGGNKGIGFEICKQLSSNGI--MVVLTCRDVTKGHEAVEKLKNSN-HENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTT-CCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             cEEEEecCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4789999999999999999999987  89999998652  2223343321 112322211 1121    111       2


Q ss_pred             CCCCEEEEcCCCC
Q 025075           87 TGMDLVIIPAGVP   99 (258)
Q Consensus        87 ~~aDiVIi~ag~~   99 (258)
                      ...|++|.+||..
T Consensus        90 g~iD~lv~nAg~~  102 (311)
T 3o26_A           90 GKLDILVNNAGVA  102 (311)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEEEECCccc
Confidence            4799999999975

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.23  E-value=0.0011  Score=59.44  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=44.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCChhHHHHHhcCCC--------CCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT--------GAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~g~~~dl~~~~~--------~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +++||+|+||+|.+|..++..|...+.+ ||+.+ |.+...+...+-.|...        ...+.. . ..|. +.++++
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~d~-~~~~~v   78 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYL-ELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI-V-STNY-EDHKDV   78 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE-E-CSSG-GGGTTC
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCc-EEEEEecChhhcCCCHHHhcCcccccccccCCceeEE-e-eCCH-HHhcCC
Confidence            4579999998899999999988776544 66665 33322222222122111        001111 1 1233 446899


Q ss_pred             CEEEEcCC
Q 025075           90 DLVIIPAG   97 (258)
Q Consensus        90 DiVIi~ag   97 (258)
                      |+||++.+
T Consensus        79 DvVf~atp   86 (350)
T 2ep5_A           79 DVVLSALP   86 (350)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999864

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.23  E-value=0.001  Score=59.67  Aligned_cols=66  Identities=20%  Similarity=0.188  Sum_probs=48.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~-~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ...++|+|||. |.+|+.++..+. ..|.  +|..||++..... ..++       .+. .  ..++++.+++||+|+++
T Consensus       161 l~g~~vgIIG~-G~IG~~vA~~l~~~~G~--~V~~~d~~~~~~~~~~~~-------g~~-~--~~~l~ell~~aDvVil~  227 (348)
T 2w2k_A          161 PRGHVLGAVGL-GAIQKEIARKAVHGLGM--KLVYYDVAPADAETEKAL-------GAE-R--VDSLEELARRSDCVSVS  227 (348)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCC--EEEEECSSCCCHHHHHHH-------TCE-E--CSSHHHHHHHCSEEEEC
T ss_pred             CCCCEEEEEEE-CHHHHHHHHHHHHhcCC--EEEEECCCCcchhhHhhc-------CcE-E--eCCHHHHhccCCEEEEe
Confidence            34469999998 999999999998 8887  8999999764221 1111       111 1  13677889999999998


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      .
T Consensus       228 v  228 (348)
T 2w2k_A          228 V  228 (348)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=97.23  E-value=0.011  Score=50.24  Aligned_cols=153  Identities=15%  Similarity=0.116  Sum_probs=86.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----hhHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-----
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENAL-----   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-----   86 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|+...     .....++....  ..+..+.. -+|   .++.+     
T Consensus        12 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A           12 KVIVIAGGIKNLGALTAKTFALESV--NLVLHYHQAKDSDTANKLKDELEDQG--AKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CEEEEETCSSHHHHHHHHHHTTSSC--EEEEEESCGGGHHHHHHHHHHHHTTT--CEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCccCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999987  8999886532     11122333221  12222211 112   22233     


Q ss_pred             --CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           87 --TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        87 --~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                        ...|++|.+||......   .+.   ...+..|+.-...+++.+.++ .+.+.+++++....    .     .-   .
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~----~-----~~---~  155 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLL----A-----AY---T  155 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHH----H-----HH---H
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhh----c-----cC---C
Confidence              37899999999754322   121   234566777666666666554 23567777765332    1     11   2


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVP  191 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~  191 (258)
                      +..-.++.+...-..+-+.+|.+++  +..|++.
T Consensus       156 ~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn  187 (262)
T 3ksu_A          156 GFYSTYAGNKAPVEHYTRAASKELM--KQQISVN  187 (262)
T ss_dssp             CCCCC-----CHHHHHHHHHHHHTT--TTTCEEE
T ss_pred             CCCchhHHHHHHHHHHHHHHHHHHH--HcCcEEE
Confidence            3334566655555567788888875  3445543

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=97.23  E-value=0.0026  Score=54.54  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++
T Consensus        11 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~   43 (281)
T 3s55_A           11 KTALITGGARGMGRSHAVALAEAGA--DIAICDRC   43 (281)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECC
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCC
Confidence            4789999999999999999999997  89999986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.23  E-value=0.0011  Score=59.47  Aligned_cols=98  Identities=22%  Similarity=0.286  Sum_probs=63.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...++|+|||. |.+|+.++..|...|.  +|..||++.. .....++.       +..   ..++++.+++||+|+++.
T Consensus       162 l~gktvGIIG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~  228 (351)
T 3jtm_A          162 LEGKTIGTVGA-GRIGKLLLQRLKPFGC--NLLYHDRLQMAPELEKETG-------AKF---VEDLNEMLPKCDVIVINM  228 (351)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--EEEEECSSCCCHHHHHHHC-------CEE---CSCHHHHGGGCSEEEECS
T ss_pred             ccCCEEeEEEe-CHHHHHHHHHHHHCCC--EEEEeCCCccCHHHHHhCC-------CeE---cCCHHHHHhcCCEEEECC
Confidence            34569999998 9999999999988887  8999998753 22222221       111   246789999999999986


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                      ...  + .++. ++  |    .+.   +....|++++|+++  .++|
T Consensus       229 Plt--~-~t~~-li--~----~~~---l~~mk~gailIN~aRG~~vd  262 (351)
T 3jtm_A          229 PLT--E-KTRG-MF--N----KEL---IGKLKKGVLIVNNARGAIME  262 (351)
T ss_dssp             CCC--T-TTTT-CB--S----HHH---HHHSCTTEEEEECSCGGGBC
T ss_pred             CCC--H-HHHH-hh--c----HHH---HhcCCCCCEEEECcCchhhC
Confidence            321  1 1111 11  1    222   33335889999986  4566

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=97.22  E-value=0.0047  Score=52.49  Aligned_cols=114  Identities=15%  Similarity=0.152  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-Ch--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++.+... ..  ....++.....  .+..+. .-+|   +.+.++      
T Consensus        27 k~vlVTGas~gIG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           27 RSVLVTGASKGIGRAIARQLAADGF--NIGVHYHRDAAGAQETLNAIVANGG--NGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            4799999999999999999999997  776655433 21  11222322211  222211 1122   222333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|.+||......   .+   -...+..|+.-    .+...+.+.+....+.||++|.
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS  164 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSS  164 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence             7999999998754321   11   12345556543    3444444444456677777764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.22  E-value=0.00046  Score=60.46  Aligned_cols=92  Identities=24%  Similarity=0.268  Sum_probs=62.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||++.....     .      ..   ...++++.+++||+|+++....
T Consensus       122 g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----~------~~---~~~~l~ell~~aDiV~l~~P~t  184 (290)
T 3gvx_A          122 GKALGILGY-GGIGRRVAHLAKAFGM--RVIAYTRSSVDQN-----V------DV---ISESPADLFRQSDFVLIAIPLT  184 (290)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSCCCTT-----C------SE---ECSSHHHHHHHCSEEEECCCCC
T ss_pred             cchheeecc-CchhHHHHHHHHhhCc--EEEEEeccccccc-----c------cc---ccCChHHHhhccCeEEEEeecc
Confidence            469999998 9999999999988887  9999998763211     0      11   1246788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + .++. ++  |    .   +.+....|++++|+++  .++|
T Consensus       185 --~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd  215 (290)
T 3gvx_A          185 --D-KTRG-MV--N----S---RLLANARKNLTIVNVARADVVS  215 (290)
T ss_dssp             --T-TTTT-CB--S----H---HHHTTCCTTCEEEECSCGGGBC
T ss_pred             --c-cchh-hh--h----H---HHHhhhhcCceEEEeehhcccC
Confidence              1 1211 11  1    1   2234445889999986  4566

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.21  E-value=0.0014  Score=57.17  Aligned_cols=89  Identities=18%  Similarity=0.204  Sum_probs=59.0

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLEN   84 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~   84 (258)
                      |.+...+.-...+..++.|+|+ |.+|.+++..|...|. .+|.+++++.++++.  .++........+.... ..++.+
T Consensus       114 ~~~~l~~~~~~l~~k~vlVlGa-GG~g~aia~~L~~~G~-~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~-~~~l~~  190 (283)
T 3jyo_A          114 FGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIED  190 (283)
T ss_dssp             HHHHHHHHCTTCCCSEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSSHHHHHHHHHHHHHHHTSCCEEEEC-STTHHH
T ss_pred             HHHHHHHhCcCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHHHHhhcCCceEEEcC-HHHHHH
Confidence            6666655433445569999998 9999999999998875 589999998654332  2232211111233221 236778


Q ss_pred             hhCCCCEEEEcCCC
Q 025075           85 ALTGMDLVIIPAGV   98 (258)
Q Consensus        85 a~~~aDiVIi~ag~   98 (258)
                      .++++|+||.+...
T Consensus       191 ~l~~~DiVInaTp~  204 (283)
T 3jyo_A          191 VIAAADGVVNATPM  204 (283)
T ss_dssp             HHHHSSEEEECSST
T ss_pred             HHhcCCEEEECCCC
Confidence            88999999998643

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.21  E-value=0.0012  Score=58.40  Aligned_cols=97  Identities=24%  Similarity=0.285  Sum_probs=62.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC-CCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV-VNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~-~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..++|+|||. |.+|..++..|...|.  +|..||+ +.......++.       .. .  ..++++.+++||+|+++..
T Consensus       145 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~-~--~~~l~ell~~aDvVil~~p  211 (320)
T 1gdh_A          145 DNKTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQ-------AT-F--HDSLDSLLSVSQFFSLNAP  211 (320)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHT-------CE-E--CSSHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcChhhhhhcC-------cE-E--cCCHHHHHhhCCEEEEecc
Confidence            3468999998 9999999999988786  8999998 77532222221       11 1  2357788999999999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ..  +. ++. ++  |    .   +.+....|++++++++.  ++|
T Consensus       212 ~~--~~-t~~-~i--~----~---~~l~~mk~gailIn~arg~~vd  244 (320)
T 1gdh_A          212 ST--PE-TRY-FF--N----K---ATIKSLPQGAIVVNTARGDLVD  244 (320)
T ss_dssp             CC--TT-TTT-CB--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             Cc--hH-HHh-hc--C----H---HHHhhCCCCcEEEECCCCcccC
Confidence            21  11 111 11  1    1   12333457888988864  355

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=97.20  E-value=0.0011  Score=56.69  Aligned_cols=110  Identities=18%  Similarity=0.120  Sum_probs=64.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-------C
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENALT-------G   88 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-------~   88 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+...  ++...    .+..+. .-+|   ++++++       .
T Consensus        16 ~k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~--~~~~~----~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   87 (266)
T 3p19_A           16 KKLVVITGASSGIGEAIARRFSEEGH--PLLLLARRVERLK--ALNLP----NTLCAQVDVTDKYTFDTAITRAEKIYGP   87 (266)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCHHHHH--TTCCT----TEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHH--HhhcC----CceEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            34688999999999999999999997  8999998753211  11111    111111 1112   223333       7


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus        88 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-~g~IV~isS  146 (266)
T 3p19_A           88 ADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARN-CGTIINISS  146 (266)
T ss_dssp             EEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence            899999999753221   121   2345556544    444555555543 456776664

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.20  E-value=0.0013  Score=55.79  Aligned_cols=112  Identities=16%  Similarity=0.182  Sum_probs=69.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCch---H-------hhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQL---E-------NALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++++...  ..++..     .+..+. .-+|.   +       +.+.
T Consensus         9 k~~lVTGas~gIG~a~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            9 KKAIVIGGTHGMGLATVRRLVEGGA--EVLLTGRNESNIARIREEFGP-----RVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCC-----cceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            4799999999999999999999997  8999999764221  112211     111111 11122   1       2234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNP  139 (258)
                      ..|++|.+||......   .+.   ...+..|+.-...+++.+.++- ..+.|+++|..
T Consensus        82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  140 (255)
T 4eso_A           82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSV  140 (255)
T ss_dssp             SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCG
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECCh
Confidence            7899999999754221   121   2346677776666666665542 34677777654

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=97.20  E-value=0.0026  Score=54.03  Aligned_cols=155  Identities=16%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++. +++...  ....++.....  .+..+.. -+|   +++.+       
T Consensus         5 k~vlVTGas~gIG~aia~~l~~~G~--~vv~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            5 KCALVTGSSRGVGKAAAIRLAENGY--NIVINYARSKKAALETAEEIEKLGV--KVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4789999999999999999999997  78886 665432  12223332211  2222211 112   22233       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ...|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.....            .+
T Consensus        81 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-~~g~iv~isS~~~~------------~~  147 (258)
T 3oid_A           81 GRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKN-GGGHIVSISSLGSI------------RY  147 (258)
T ss_dssp             SCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT-TCEEEEEEEEGGGT------------SB
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEECchhhC------------CC
Confidence            35699999998643221   121   2234556544    34444444443 35667766542220            01


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .+..-.++.+......+-+.+|.+++  +..|++-.+-
T Consensus       148 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v~  183 (258)
T 3oid_A          148 LENYTTVGVSKAALEALTRYLAVELS--PKQIIVNAVS  183 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEEe
Confidence            22222223332223456667777763  4456654443

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=97.20  E-value=0.0034  Score=53.43  Aligned_cols=112  Identities=14%  Similarity=0.043  Sum_probs=64.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++.....  .+..+. .-+|   +++.+       .
T Consensus        12 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A           12 KVVVISGVGPALGTTLARRCAEQGA--DLVLAARTVERLEDVAKQVTDTGR--RALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             CEEEEESCCTTHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  899999976422  2223322211  222111 1112   22223       3


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||.....+    .+.   .+.+..|+.-    .+.+.+.+.+..  +.||++|.
T Consensus        88 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~--g~iv~isS  147 (264)
T 3ucx_A           88 RVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK--GAVVNVNS  147 (264)
T ss_dssp             CCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT--CEEEEECC
T ss_pred             CCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC--CEEEEECc
Confidence            7899999998642221    121   2234555543    344444444433  67777764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.20  E-value=0.0031  Score=58.04  Aligned_cols=101  Identities=16%  Similarity=0.184  Sum_probs=65.1

Q ss_pred             HhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075            9 QAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus         9 ~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      .+++|..+ .....+|+|+|+ |.+|..++..|...|.  +|..+|+++.+.... ..+.     ...    .+++++++
T Consensus       208 ~gi~rat~~~L~GktV~ViG~-G~IGk~vA~~Lra~Ga--~Viv~D~dp~ra~~A-~~~G-----~~v----~~Leeal~  274 (435)
T 3gvp_A          208 DGLKRTTDMMFGGKQVVVCGY-GEVGKGCCAALKAMGS--IVYVTEIDPICALQA-CMDG-----FRL----VKLNEVIR  274 (435)
T ss_dssp             HHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTT-----CEE----CCHHHHTT
T ss_pred             HHHHHhhCceecCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEeCChhhhHHH-HHcC-----CEe----ccHHHHHh
Confidence            44555543 223458999998 9999999999988887  899999876322111 1111     111    25678999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +||+|+.+.|.+   +.-.           .+..+   ...|.+++++++.+
T Consensus       275 ~ADIVi~atgt~---~lI~-----------~e~l~---~MK~gailINvgrg  309 (435)
T 3gvp_A          275 QVDIVITCTGNK---NVVT-----------REHLD---RMKNSCIVCNMGHS  309 (435)
T ss_dssp             TCSEEEECSSCS---CSBC-----------HHHHH---HSCTTEEEEECSST
T ss_pred             cCCEEEECCCCc---ccCC-----------HHHHH---hcCCCcEEEEecCC
Confidence            999999974422   2110           12223   33588999999876

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=97.20  E-value=0.0014  Score=56.38  Aligned_cols=36  Identities=25%  Similarity=0.294  Sum_probs=32.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++|.|+||+|.+|..++..|+..|.  +|++.|++..
T Consensus        28 ~k~vlITGasggIG~~la~~l~~~G~--~V~~~~r~~~   63 (286)
T 1xu9_A           28 GKKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKE   63 (286)
T ss_dssp             TCEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            35799999999999999999999987  8999998764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=97.19  E-value=0.0017  Score=55.08  Aligned_cols=120  Identities=15%  Similarity=0.089  Sum_probs=68.7

Q ss_pred             CCCCCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCC--CchHhhhC----
Q 025075           17 GAAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQ--PQLENALT----   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~--G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~----   87 (258)
                      +.+.++|.|+||+  |.+|.+++..|+..|.  +|++.|++... ....++..............+  .++++.++    
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA--ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC--CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHH
Confidence            4445689999998  8999999999999997  89999987531 112222111111111111111  12223333    


Q ss_pred             ---CCCEEEEcCCCCCC-----C--C-Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 ---GMDLVIIPAGVPRK-----P--G-MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 ---~aDiVIi~ag~~~~-----~--g-~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                         ..|++|.+||....     +  . .+.   ...+..|+.-...+.+.+.++- +.+.|+++|.
T Consensus        89 ~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS  154 (271)
T 3ek2_A           89 HWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSY  154 (271)
T ss_dssp             HCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             HcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEec
Confidence               67999999987532     1  1 221   2345566665566666655442 3466776664

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=97.19  E-value=0.005  Score=52.39  Aligned_cols=117  Identities=12%  Similarity=0.091  Sum_probs=66.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhh-------h
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENA-------L   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a-------~   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++........+..+. .-+|   .++.       +
T Consensus         8 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            8 EAVAVVTGGSSGIGLATVELLLEAGA--AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999997  89999998642  1222332211111122211 1122   2222       2


Q ss_pred             CCCCEEEEcCCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhh---CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~---~p~a~viv~tN  138 (258)
                      ...|++|.+||.....   ..+.   ...+..|+.-...+++.+..+   ...+.||++|.
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS  146 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNS  146 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEE
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECC
Confidence            3789999999974321   1222   234566665544444444332   23566776654

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=97.19  E-value=0.0024  Score=54.29  Aligned_cols=156  Identities=13%  Similarity=0.128  Sum_probs=85.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC-----
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT-----   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~-----   87 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++. +.+...  ....++.....  .+..+. .-+|   +++.++     
T Consensus         8 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (259)
T 3edm_A            8 NRTIVVAGAGRDIGRACAIRFAQEGA--NVVLTYNGAAEGAATAVAEIEKLGR--SALAIKADLTNAAEVEAAISAAADK   83 (259)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECSSCHHHHHHHHHHHTTTS--CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--ceEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34799999999999999999999997  78888 444432  11223332221  111111 1112   223333     


Q ss_pred             --CCCEEEEcCCCCCC--C--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 --GMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 --~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                        ..|++|..||....  +  ..+.   ...+..|+.-...+++.+.++- +.+.||++|....           ...+.
T Consensus        84 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~~~~  152 (259)
T 3edm_A           84 FGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAG-----------RDGGG  152 (259)
T ss_dssp             HCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHH-----------HHCCS
T ss_pred             hCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHh-----------ccCCC
Confidence              78999999986421  1  1122   2346667776666766666543 2456777664211           00113


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +..-.++.+...-..+-+.+|.+++-  . |++..+
T Consensus       153 ~~~~~Y~asKaa~~~l~~~la~e~~~--~-I~vn~v  185 (259)
T 3edm_A          153 PGALAYATSKGAVMTFTRGLAKEVGP--K-IRVNAV  185 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHTT--T-CEEEEE
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHCC--C-CEEEEE
Confidence            33333333333334566777888753  3 554433

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.19  E-value=0.0013  Score=58.04  Aligned_cols=93  Identities=24%  Similarity=0.287  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++.......++   .    +. .   .++++.+++||+|+++...
T Consensus       141 ~g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~~p~  206 (307)
T 1wwk_A          141 EGKTIGIIGF-GRIGYQVAKIANALGM--NILLYDPYPNEERAKEV---N----GK-F---VDLETLLKESDVVTIHVPL  206 (307)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CE-E---CCHHHHHHHCSEEEECCCC
T ss_pred             CCceEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHhhc---C----cc-c---cCHHHHHhhCCEEEEecCC
Confidence            3469999998 9999999999988886  89999997754222111   1    11 1   2567889999999998632


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .  + +++. ++  |    .+.   +....|++++++++-
T Consensus       207 ~--~-~t~~-li--~----~~~---l~~mk~ga~lin~ar  233 (307)
T 1wwk_A          207 V--E-STYH-LI--N----EER---LKLMKKTAILINTSR  233 (307)
T ss_dssp             S--T-TTTT-CB--C----HHH---HHHSCTTCEEEECSC
T ss_pred             C--h-HHhh-hc--C----HHH---HhcCCCCeEEEECCC
Confidence            1  1 1111 11  1    122   233357889988763

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.17  E-value=0.0039  Score=53.14  Aligned_cols=112  Identities=13%  Similarity=0.228  Sum_probs=63.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      ++.|+||+|.+|.+++..|+..|.  .|++.|.+.. .  ....++.....  .+..+. .-+|   +++.+       .
T Consensus        27 ~vlITGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (269)
T 3gk3_A           27 VAFVTGGMGGLGAAISRRLHDAGM--AVAVSHSERNDHVSTWLMHERDAGR--DFKAYAVDVADFESCERCAEKVLADFG  102 (269)
T ss_dssp             EEEETTTTSHHHHHHHHHHHTTTC--EEEEEECSCHHHHHHHHHHHHTTTC--CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCchHHHHHHHHHHHhcCC--ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            578889999999999999999997  8999986543 1  11122222111  222111 1122   22223       3


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.
T Consensus       103 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~-~~g~iv~isS  162 (269)
T 3gk3_A          103 KVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVER-RFGRIVNIGS  162 (269)
T ss_dssp             CCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC
T ss_pred             CCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCCEEEEeCC
Confidence            7999999998753221   122   2234555544    44444444443 3467777764

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.17  E-value=0.0013  Score=59.06  Aligned_cols=98  Identities=21%  Similarity=0.292  Sum_probs=63.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.+|+.++..|...|.  +|..||++.......++.       ...   ..++++.++.||+|+++..
T Consensus       166 l~g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          166 IRGETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQR---VSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CEE---CSSHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhHhhcC-------Cee---cCCHHHHHhcCCEEEEcCC
Confidence            34569999998 9999999999988887  899999876432222111       111   1357788999999999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ..  + .++. ++  |    .   +.+....|++++|+++.  ++|
T Consensus       233 ~t--~-~t~~-li--~----~---~~l~~mk~gailIN~arg~~vd  265 (347)
T 1mx3_A          233 LN--E-HNHH-LI--N----D---FTVKQMRQGAFLVNTARGGLVD  265 (347)
T ss_dssp             CC--T-TCTT-SB--S----H---HHHTTSCTTEEEEECSCTTSBC
T ss_pred             CC--H-HHHH-Hh--H----H---HHHhcCCCCCEEEECCCChHHh
Confidence            21  1 1111 11  1    1   22334457889998863  455

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=97.17  E-value=0.0074  Score=51.92  Aligned_cols=117  Identities=17%  Similarity=0.207  Sum_probs=67.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEeC-CCc---hHhhh----
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLG-QPQ---LENAL----   86 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~----   86 (258)
                      .+.+++.|+||+|.+|.+++..|+..|.  +|++.|++..   .....++.... ...+..+.. -+|   +++.+    
T Consensus        23 l~~k~~lVTGas~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~   99 (281)
T 3v2h_A           23 MMTKTAVITGSTSGIGLAIARTLAKAGA--NIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVA   99 (281)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHH
Confidence            3345789999999999999999999997  8999998542   11222232211 112222211 112   22223    


Q ss_pred             ---CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           87 ---TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ---~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                         ...|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus       100 ~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  163 (281)
T 3v2h_A          100 DRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKG-WGRIINIAS  163 (281)
T ss_dssp             HHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             HHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEECC
Confidence               37899999999754322   121   2244555544    444455555543 466776664

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=97.16  E-value=0.003  Score=53.88  Aligned_cols=114  Identities=15%  Similarity=0.214  Sum_probs=63.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---hHhhh-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~~~a~-------   86 (258)
                      ++|.|+||+|.+|.+++..|+..|.  +|++. +++....  ...++....  ..+..+.. -.|   +++.+       
T Consensus        27 k~vlITGas~gIG~a~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           27 PVVLVTGGSRGIGAAVCRLAARQGW--RVGVNYAANREAADAVVAAITESG--GEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCChhHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            3688999999999999999999997  77776 4443321  112222211  12222211 112   22222       


Q ss_pred             CCCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhh--CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKC--CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~--~p~a~viv~tN  138 (258)
                      ...|++|.+||....++    .+.   .+.+..|+.    +.+.+.+.+.+.  ...+.||++|.
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS  167 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSS  167 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcc
Confidence            37899999999754322    121   234455544    344555555543  23567777765

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=97.16  E-value=0.0037  Score=53.93  Aligned_cols=114  Identities=18%  Similarity=0.191  Sum_probs=65.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CC---chHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QP---QLENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~---d~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++....  ...++....  ..+..+.. -+   ++++.+       .
T Consensus         9 k~vlVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            9 KIAIVTGASSGIGRAAALLFAREGA--KVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999997  899999876421  222332211  12221111 11   222223       3


Q ss_pred             CCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCC
Q 025075           88 GMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ..|++|.+||.....+    .+.   ...+..|+.    +.+.+.+.+.+. ..+.|+++|..
T Consensus        85 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~  146 (280)
T 3tox_A           85 GLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAAL-GGGSLTFTSSF  146 (280)
T ss_dssp             CCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCS
T ss_pred             CCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCCEEEEEcCh
Confidence            7999999999643221    121   223455544    344444555443 35677777653

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.15  E-value=0.0017  Score=57.89  Aligned_cols=96  Identities=27%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++.......++   .    +. .   .++++.+++||+|+++...
T Consensus       164 ~g~tvgIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~~P~  229 (335)
T 2g76_A          164 NGKTLGILGL-GRIGREVATRMQSFGM--KTIGYDPIISPEVSASF---G----VQ-Q---LPLEEIWPLCDFITVHTPL  229 (335)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSSCHHHHHHT---T----CE-E---CCHHHHGGGCSEEEECCCC
T ss_pred             CcCEEEEEeE-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc---C----ce-e---CCHHHHHhcCCEEEEecCC
Confidence            4469999998 9999999999988776  89999987653222111   1    11 1   2567889999999998632


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      .  + .++. ++  |    .   +.+....|++++|+++-  ++|
T Consensus       230 t--~-~t~~-li--~----~---~~l~~mk~gailIN~arg~vvd  261 (335)
T 2g76_A          230 L--P-STTG-LL--N----D---NTFAQCKKGVRVVNCARGGIVD  261 (335)
T ss_dssp             C--T-TTTT-SB--C----H---HHHTTSCTTEEEEECSCTTSBC
T ss_pred             C--H-HHHH-hh--C----H---HHHhhCCCCcEEEECCCccccC
Confidence            2  1 1111 11  1    1   22344457889998863  445

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.14  E-value=0.00074  Score=60.53  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=43.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||+|+||+|.+|..++..|...+.+ ||+.+......+...+-.+..+.  ..+.    ..+++ ++.++|+||++.|
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~-elv~v~s~~~~g~~~~~~~~~~~g~~~~~----~~~~~-~~~~vDvV~~a~g   77 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYL-EVKQVTSRRFAGEPVHFVHPNLRGRTNLK----FVPPE-KLEPADILVLALP   77 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTE-EEEEEBCSTTTTSBGGGTCGGGTTTCCCB----CBCGG-GCCCCSEEEECCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEECchhhCchhHHhCchhcCccccc----ccchh-HhcCCCEEEEcCC
Confidence            579999998899999999988876644 66655433333322221111111  1111    11233 3689999999975

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=97.13  E-value=0.005  Score=53.34  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=70.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--h-HH-HHHhcCCCCCeEEEEeC-CCc---hHhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VT-ADISHMDTGAVVRGFLG-QPQ---LENA------   85 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g-~~-~dl~~~~~~~~v~~~~~-~~d---~~~a------   85 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...  . .. ..+....  ..+..+.. -+|   +++.      
T Consensus        49 ~k~vlVTGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~  124 (294)
T 3r3s_A           49 DRKALVTGGDSGIGRAAAIAYAREGA--DVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKARE  124 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999997  89999986431  1 11 1122111  12221111 112   1222      


Q ss_pred             -hCCCCEEEEcCCCCCCCC----Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           86 -LTGMDLVIIPAGVPRKPG----MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        86 -~~~aDiVIi~ag~~~~~g----~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                       +...|++|..||.....+    .+   -...+..|+.-...+.+.+..+- ..+.||++|.
T Consensus       125 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS  186 (294)
T 3r3s_A          125 ALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS  186 (294)
T ss_dssp             HHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred             HcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence             247899999999743221    12   13356778777777777776654 3467777764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.13  E-value=0.0033  Score=54.76  Aligned_cols=97  Identities=19%  Similarity=0.168  Sum_probs=63.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||+ |.+|..++..|...|.  +|..+|++..+...  +....  ...  .. ..++++.++++|+|+++..
T Consensus       153 l~g~~v~IiG~-G~iG~~~a~~l~~~G~--~V~~~dr~~~~~~~--~~~~g--~~~--~~-~~~l~~~l~~aDvVi~~~p  222 (293)
T 3d4o_A          153 IHGANVAVLGL-GRVGMSVARKFAALGA--KVKVGARESDLLAR--IAEMG--MEP--FH-ISKAAQELRDVDVCINTIP  222 (293)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSHHHHHH--HHHTT--SEE--EE-GGGHHHHTTTCSEEEECCS
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHH--HHHCC--Cee--cC-hhhHHHHhcCCCEEEECCC
Confidence            34469999998 9999999999988886  89999987542211  11111  111  11 2356788999999999873


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec-CCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNS  142 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t-NPvd~  142 (258)
                      .    +.     +  |.    +   .+....|.+++++++ +|.++
T Consensus       223 ~----~~-----i--~~----~---~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          223 A----LV-----V--TA----N---VLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             S----CC-----B--CH----H---HHHHSCTTCEEEECSSTTCSB
T ss_pred             h----HH-----h--CH----H---HHHhcCCCCEEEEecCCCCCC
Confidence            2    21     1  11    1   223335788999987 77664

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.12  E-value=0.0014  Score=60.05  Aligned_cols=104  Identities=19%  Similarity=0.250  Sum_probs=63.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCe---------EEEEeC----------
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAV---------VRGFLG----------   78 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~---------v~~~~~----------   78 (258)
                      ++.||+|+|+ |.+|...+..+...|.  +|..+|++..+ ....++........         ...+..          
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~  265 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGA--VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQ  265 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhh
Confidence            4569999998 9999999999988886  89999998863 22222211000000         000100          


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..++.+++++||+||.++..|.++...   ++      .++.++   .-.|.++|+.++
T Consensus       266 ~~~l~e~l~~aDVVI~tvlipg~~ap~---Lv------t~emv~---~Mk~GsVIVDvA  312 (405)
T 4dio_A          266 AALVAEHIAKQDIVITTALIPGRPAPR---LV------TREMLD---SMKPGSVVVDLA  312 (405)
T ss_dssp             HHHHHHHHHTCSEEEECCCCSSSCCCC---CB------CHHHHT---TSCTTCEEEETT
T ss_pred             HhHHHHHhcCCCEEEECCcCCCCCCCE---Ee------cHHHHh---cCCCCCEEEEEe
Confidence            125678899999999998766433211   11      123333   334888888876

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.12  E-value=0.00098  Score=59.03  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=62.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||++....     .      .+.......++++.+++||+|+++.-. 
T Consensus       139 g~tvGIiG~-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~-----~------~~~~~~~~~~l~ell~~aDiV~l~~Pl-  203 (315)
T 3pp8_A          139 EFSVGIMGA-GVLGAKVAESLQAWGF--PLRCWSRSRKSW-----P------GVESYVGREELRAFLNQTRVLINLLPN-  203 (315)
T ss_dssp             TCCEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSCCCC-----T------TCEEEESHHHHHHHHHTCSEEEECCCC-
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEEcCCchhh-----h------hhhhhcccCCHHHHHhhCCEEEEecCC-
Confidence            468999998 9999999999988887  899999865311     0      011111224678899999999998621 


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                       .+ +++. ++  |    .   +.+....|++++|+++  .++|
T Consensus       204 -t~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd  235 (315)
T 3pp8_A          204 -TA-QTVG-II--N----S---ELLDQLPDGAYVLNLARGVHVQ  235 (315)
T ss_dssp             -CG-GGTT-CB--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             -ch-hhhh-hc--c----H---HHHhhCCCCCEEEECCCChhhh
Confidence             11 1111 11  1    1   2234445889999987  3466

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.11  E-value=0.0021  Score=56.70  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=49.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.+|+.++..|...|.  +|..||++.......++   .    .. .   .++++.+++||+|+++..
T Consensus       140 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvVvl~~P  205 (313)
T 2ekl_A          140 LAGKTIGIVGF-GRIGTKVGIIANAMGM--KVLAYDILDIREKAEKI---N----AK-A---VSLEELLKNSDVISLHVT  205 (313)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHHHHT---T----CE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCCCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCcchhHHHhc---C----ce-e---cCHHHHHhhCCEEEEecc
Confidence            34469999998 9999999999988887  89999997754222111   1    11 1   256788999999999863

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.11  E-value=0.0018  Score=58.45  Aligned_cols=71  Identities=17%  Similarity=0.252  Sum_probs=44.0

Q ss_pred             CCeEEEEcCCCchHHHHHH-HHHhCCC-CcEEEEEeCCCChhHHHH-HhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAM-LMKINPL-VSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~-~L~~~~~-~~ei~L~D~~~~~g~~~d-l~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||+|+||+|.+|..+.. .|...++ .-+|+++..+. .|.... +...  ...+.  . ..+. +.++++|+||.+.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s-~G~~v~~~~g~--~i~~~--~-~~~~-~~~~~~DvVf~a~   73 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQ-LGQAAPSFGGT--TGTLQ--D-AFDL-EALKALDIIVTCQ   73 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSS-TTSBCCGGGTC--CCBCE--E-TTCH-HHHHTCSEEEECS
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCC-CCCCccccCCC--ceEEE--e-cCCh-HHhcCCCEEEECC
Confidence            4699999999999999998 5655543 34788876653 333211 1111  11221  1 2233 3478999999987


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      |
T Consensus        74 g   74 (367)
T 1t4b_A           74 G   74 (367)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=97.11  E-value=0.011  Score=50.49  Aligned_cols=118  Identities=17%  Similarity=0.206  Sum_probs=68.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---------hHHHHHhcCCCCCeEEEEeC-CCc---hHhhh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFLG-QPQ---LENAL   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---------g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++...         ....++....  ..+..+.. -+|   +++.+
T Consensus         6 ~k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~   81 (274)
T 3e03_A            6 GKTLFITGASRGIGLAIALRAARDGA--NVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAAV   81 (274)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHHH
T ss_pred             CcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHH
Confidence            35799999999999999999999997  89999998631         1111221111  12222111 112   22222


Q ss_pred             -------CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCC
Q 025075           87 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNS  142 (258)
Q Consensus        87 -------~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~  142 (258)
                             ...|++|.+||......   .+.   ...+..|+.-    .+.+.+.+.+. ..+.||+++.....
T Consensus        82 ~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~  153 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQA-PNPHILTLAPPPSL  153 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTS-SSCEEEECCCCCCC
T ss_pred             HHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhc-CCceEEEECChHhc
Confidence                   37899999999753221   121   2244556554    44444444433 45677777765543

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=97.11  E-value=0.0026  Score=55.20  Aligned_cols=155  Identities=12%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             CeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           21 FKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~--VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      +++.|+||+|+  +|.+++..|+..|.  +|++.|+++.. ....++.....  .+..+. .-+|   +++.+       
T Consensus        32 k~~lVTGasg~~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           32 KRGLILGVANNRSIAWGIAKAAREAGA--ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             CEEEEECCCSSSSHHHHHHHHHHHTTC--EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHHhc
Confidence            46899999877  99999999999997  89999987531 11112211111  111111 1112   22222       


Q ss_pred             CCCCEEEEcCCCCC-----CC--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           87 TGMDLVIIPAGVPR-----KP--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        87 ~~aDiVIi~ag~~~-----~~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      ...|++|.+||...     .+  ..+.   ...+..|+.-...+++.+.++- ..+.||++|.....           . 
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~-----------~-  175 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAE-----------K-  175 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGT-----------S-
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhc-----------c-
Confidence            37899999999753     11  1121   2345667665555555555442 35777777643321           0 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +.+..-.++.+...-..+-+.+|.+++  +..|++..+
T Consensus       176 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  211 (293)
T 3grk_A          176 VMPNYNVMGVAKAALEASVKYLAVDLG--PQNIRVNAI  211 (293)
T ss_dssp             BCTTTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHh--HhCCEEEEE
Confidence            122222333332223456667777764  344554433

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.11  E-value=0.0012  Score=59.18  Aligned_cols=95  Identities=24%  Similarity=0.334  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+........   . .    .. .  ..++++.+++||+|+++....
T Consensus       173 gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~~~---~-g----~~-~--~~~l~ell~~sDvV~l~~Plt  238 (345)
T 4g2n_A          173 GRRLGIFGM-GRIGRAIATRARGFGL--AIHYHNRTRLSHALE---E-G----AI-Y--HDTLDSLLGASDIFLIAAPGR  238 (345)
T ss_dssp             TCEEEEESC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHH---T-T----CE-E--CSSHHHHHHTCSEEEECSCCC
T ss_pred             CCEEEEEEe-ChhHHHHHHHHHHCCC--EEEEECCCCcchhhh---c-C----Ce-E--eCCHHHHHhhCCEEEEecCCC
Confidence            368999998 9999999999988887  899999875321111   1 1    11 1  246788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + +++. ++  |    .+.   +....|.+++|+++  .++|
T Consensus       239 --~-~T~~-li--~----~~~---l~~mk~gailIN~aRG~~vd  269 (345)
T 4g2n_A          239 --P-ELKG-FL--D----HDR---IAKIPEGAVVINISRGDLIN  269 (345)
T ss_dssp             --G-GGTT-CB--C----HHH---HHHSCTTEEEEECSCGGGBC
T ss_pred             --H-HHHH-Hh--C----HHH---HhhCCCCcEEEECCCCchhC
Confidence              1 1111 11  1    222   33345889999986  3566

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=97.10  E-value=0.0075  Score=51.56  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL-GQPQ---LENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~~------   87 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|+... .  ....++.....  .+..+. .-+|   +++.++      
T Consensus        29 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           29 RIALVTGASRGIGRAIALELAAAGA--KVAVNYASSAGAADEVVAAIAAAGG--EAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcCC--cEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4688999999999999999999997  8999888542 1  11222222211  222111 1122   222333      


Q ss_pred             -CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|..||......   .+.   ...+..|+.-    .+.+.+.+.+.. .+.||++|.
T Consensus       105 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-~g~iv~isS  165 (269)
T 4dmm_A          105 GRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQR-SGRIINIAS  165 (269)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECC
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CcEEEEECc
Confidence             7899999999754321   111   2234555543    444555555443 456776663

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=97.10  E-value=0.0017  Score=55.17  Aligned_cols=117  Identities=11%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------
Q 025075           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ--PQLENALT-------   87 (258)
Q Consensus        20 ~~KI~IIGa~--G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------   87 (258)
                      .+++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++..............+  .+++++++       
T Consensus         8 ~k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            8 GKKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             TCEEEEESCCSSSSHHHHHHHHHHHHTC--EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3579999998  8999999999999887  8999998763 1122222221111111111111  12223333       


Q ss_pred             CCCEEEEcCCCCCC-----C--CCc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRK-----P--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-----~--g~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      ..|++|.+||....     +  ..+   -...+..|+.-...+++.+.++- ..+.||++|.
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  147 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY  147 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            68999999987532     1  112   12356667777777776665542 2356777764

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=97.10  E-value=0.0027  Score=56.09  Aligned_cols=35  Identities=17%  Similarity=0.130  Sum_probs=31.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D-~~~~   57 (258)
                      +++.|+||+|.+|..++..|+..|.  +|++.| ++.+
T Consensus        47 k~~lVTGas~GIG~aia~~La~~G~--~Vv~~~~r~~~   82 (328)
T 2qhx_A           47 PVALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRSAA   82 (328)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCCHH
Confidence            4688999999999999999999997  899999 7654

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=97.10  E-value=0.0047  Score=53.58  Aligned_cols=157  Identities=12%  Similarity=0.078  Sum_probs=85.4

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCCCCCeEEEEeCC--CchHhhh-------CC
Q 025075           21 FKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMDTGAVVRGFLGQ--PQLENAL-------TG   88 (258)
Q Consensus        21 ~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~~~~~v~~~~~~--~d~~~a~-------~~   88 (258)
                      +++.|+||+|  .+|.+++..|+..|.  +|++.|+++.... ..++..............+  .++++.+       ..
T Consensus        31 k~vlVTGasg~~GIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (296)
T 3k31_A           31 KKGVIIGVANDKSLAWGIAKAVCAQGA--EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS  108 (296)
T ss_dssp             CEEEEECCCSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            4688999976  999999999999997  8999999864211 1112111001111101111  1222233       36


Q ss_pred             CCEEEEcCCCCCC-----C--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           89 MDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        89 aDiVIi~ag~~~~-----~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .|++|.+||....     +  ..+.   ...+..|+.-...+++.+..+- ..+.||++|.....           . +.
T Consensus       109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~-----------~-~~  176 (296)
T 3k31_A          109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAE-----------K-VV  176 (296)
T ss_dssp             CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGT-----------S-CC
T ss_pred             CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhc-----------c-CC
Confidence            8999999997532     1  1121   2345667776667777666553 35677777643221           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +..-.++.+...-..+-+.+|.+++  +..|++.++
T Consensus       177 ~~~~~Y~asKaal~~l~~~la~e~~--~~gIrvn~v  210 (296)
T 3k31_A          177 PHYNVMGVCKAALEASVKYLAVDLG--KQQIRVNAI  210 (296)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEE
T ss_pred             CCchhhHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            2222233332223345666777764  445655443

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=97.10  E-value=0.0021  Score=58.37  Aligned_cols=76  Identities=24%  Similarity=0.321  Sum_probs=44.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCChhHHH-HHhcCC---------CCCeEEEEeCCCchHhh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTA-DISHMD---------TGAVVRGFLGQPQLENA   85 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~~g~~~-dl~~~~---------~~~~v~~~~~~~d~~~a   85 (258)
                      +|+++||+|+||+|.+|..+...|...+.+ ||. |+......|+.+ |...-.         ....+..   . +.++.
T Consensus        16 ~M~~~kVaIvGAtG~vG~ell~lL~~hp~~-el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~---~-~~~~~   90 (381)
T 3hsk_A           16 HMSVKKAGVLGATGSVGQRFILLLSKHPEF-EIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE---C-KPEGN   90 (381)
T ss_dssp             --CCEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE---S-SSCTT
T ss_pred             cCCccEEEEECCCChHHHHHHHHHHcCCCc-eEEEeeccccccCCCHHHhcccccccccccccccceEEe---C-chhhh
Confidence            456679999999999999999988887654 775 444433333322 221100         0112221   1 11225


Q ss_pred             hCCCCEEEEcCC
Q 025075           86 LTGMDLVIIPAG   97 (258)
Q Consensus        86 ~~~aDiVIi~ag   97 (258)
                      ++++|+||++.+
T Consensus        91 ~~~~Dvvf~alp  102 (381)
T 3hsk_A           91 FLECDVVFSGLD  102 (381)
T ss_dssp             GGGCSEEEECCC
T ss_pred             cccCCEEEECCC
Confidence            789999999864

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=97.09  E-value=0.00051  Score=58.06  Aligned_cols=113  Identities=13%  Similarity=0.143  Sum_probs=64.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-------hCCCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-------LTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-------~~~aDi   91 (258)
                      +.++|.|+||+|.+|.+++..|+..|.  +|++.|++.+....  +..  ....+   ....++++.       +...|+
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~--~~~--~~~D~---~~~~~~~~~~~~~~~~~g~id~   84 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKG--LFG--VEVDV---TDSDAVDRAFTAVEEHQGPVEV   84 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTT--SEE--EECCT---TCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChHHHHH--hcC--eeccC---CCHHHHHHHHHHHHHHcCCCCE
Confidence            345799999999999999999999987  89999987642111  000  00000   000112222       336899


Q ss_pred             EEEcCCCCCCC---CCc---hhhHHHHhHHHH----HHHHHHhhhhCCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKP---GMT---RDDLFNINAGIV----RTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~---g~~---r~d~~~~n~~i~----~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +|.+||.....   ..+   -.+.+..|+.-.    +.+.+.+++. ..+.||++|....
T Consensus        85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~  143 (247)
T 1uzm_A           85 LVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRN-KFGRMIFIGSVSG  143 (247)
T ss_dssp             EEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCCCC
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCCEEEEECCHhh
Confidence            99999875321   112   123445565444    4444444433 3467777775543

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.08  E-value=0.0007  Score=59.82  Aligned_cols=59  Identities=22%  Similarity=0.245  Sum_probs=46.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++|+|||. |.+|..++..|...|.  +|..||++.....      .    .      ..++++.++.||+|+++.
T Consensus       143 ~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~~------~----~------~~~l~ell~~aDvV~l~~  201 (311)
T 2cuk_A          143 QGLTLGLVGM-GRIGQAVAKRALAFGM--RVVYHARTPKPLP------Y----P------FLSLEELLKEADVVSLHT  201 (311)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSS------S----C------BCCHHHHHHHCSEEEECC
T ss_pred             CCCEEEEEEE-CHHHHHHHHHHHHCCC--EEEEECCCCcccc------c----c------cCCHHHHHhhCCEEEEeC
Confidence            3468999998 9999999999988886  8999998764221      0    0      135678899999999986

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=97.08  E-value=0.0037  Score=54.93  Aligned_cols=33  Identities=27%  Similarity=0.384  Sum_probs=30.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++
T Consensus        28 k~vlVTGas~GIG~aia~~la~~G~--~Vv~~~r~   60 (322)
T 3qlj_A           28 RVVIVTGAGGGIGRAHALAFAAEGA--RVVVNDIG   60 (322)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCc
Confidence            4688999999999999999999997  89999986

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=97.08  E-value=0.0037  Score=52.82  Aligned_cols=157  Identities=15%  Similarity=0.160  Sum_probs=81.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCC-CeEEEEe-CCCc---hHhhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTG-AVVRGFL-GQPQ---LENAL------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~-~~v~~~~-~~~d---~~~a~------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+..  ...++...... ..+..+. .-+|   .++.+      
T Consensus         7 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            7 KGLAIITGASQGIGAVIAAGLATDGY--RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHHTC--EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            34789999999999999999999887  899999986421  12222211000 1111111 1122   22222      


Q ss_pred             -CCCCEEEEcCCCCCCCC--Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           87 -TGMDLVIIPAGVPRKPG--MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g--~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                       ...|++|.+||......  .+.   ...+..|+.    +.+.+.+.+.+. ..+.|++++.....           .+ 
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~-~~g~iv~isS~~~~-----------~~-  151 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQ-KNGYIFNVASRAAK-----------YG-  151 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECC------------------
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEEccHHhc-----------CC-
Confidence             36899999999743221  111   223445544    445555555544 35677777654431           01 


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .++.-.++.+......+-+.++.+++  +..|++..+
T Consensus       152 ~~~~~~Y~asKaa~~~l~~~la~e~~--~~gi~vn~v  186 (250)
T 3nyw_A          152 FADGGIYGSTKFALLGLAESLYRELA--PLGIRVTTL  186 (250)
T ss_dssp             -CCTTHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence            12222333332223445666777763  344554433

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.08  E-value=0.001  Score=57.07  Aligned_cols=49  Identities=18%  Similarity=0.314  Sum_probs=31.5

Q ss_pred             HHHhHHhhcCCCCC------CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075            7 LRQAKCRAKGGAAG------FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus         7 ~~~~~~~~~~~~~~------~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |.-+...+++++.+      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+
T Consensus        11 ~~~~~~~gp~~m~~~~~l~~k~vlVTGas~GIG~aia~~l~~~G~--~Vi~~~r~~~   65 (281)
T 3ppi_A           11 TLEAQTQGPGSMVTIKQFEGASAIVSGGAGGLGEATVRRLHADGL--GVVIADLAAE   65 (281)
T ss_dssp             -------------CCGGGTTEEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CCCCcccCcchhhhhhccCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCChH
Confidence            44445555554322      3588999999999999999999997  8999999764

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.07  E-value=0.0021  Score=54.03  Aligned_cols=149  Identities=12%  Similarity=0.128  Sum_probs=80.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-e--CCCChhH--HHHHhcCCCCCeEEEEeCCCchHhhh-------CC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-D--VVNTPGV--TADISHMDTGAVVRGFLGQPQLENAL-------TG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~-D--~~~~~g~--~~dl~~~~~~~~v~~~~~~~d~~~a~-------~~   88 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++. +  ++.+...  ..++    ..  .... ...++++.+       ..
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~~~~r~~~~~~~~~~~~----~~--~~~~-~~~~v~~~~~~~~~~~g~   72 (244)
T 1zmo_A            2 VIALVTHARHFAGPAAVEALTQDGY--TVVCHDASFADAAERQRFESEN----PG--TIAL-AEQKPERLVDATLQHGEA   72 (244)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHS----TT--EEEC-CCCCGGGHHHHHGGGSSC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCcCCHHHHHHHHHHh----CC--Cccc-CHHHHHHHHHHHHHHcCC
Confidence            4789999999999999999999997  89998 5  7654221  1122    11  1111 122332322       36


Q ss_pred             CCEEEEcCCCCCC---C---CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           89 MDLVIIPAGVPRK---P---GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        89 aDiVIi~ag~~~~---~---g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      .|++|.+||....   .   ..+.   ...+..|+.-    .+.+.+.+.+. ..+.||++|.-...            .
T Consensus        73 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-~~g~iv~isS~~~~------------~  139 (244)
T 1zmo_A           73 IDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAA-GGASVIFITSSVGK------------K  139 (244)
T ss_dssp             EEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEEECCGGGT------------S
T ss_pred             CCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc-CCcEEEEECChhhC------------C
Confidence            8999999997543   1   1121   2345556543    44455555443 35677777653221            0


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +.|..-.++.+......+-+.++.+++  +..|++.++
T Consensus       140 ~~~~~~~Y~asK~a~~~~~~~la~e~~--~~gi~v~~v  175 (244)
T 1zmo_A          140 PLAYNPLYGPARAATVALVESAAKTLS--RDGILLYAI  175 (244)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHHHHHHG--GGTEEEEEE
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHh--hcCcEEEEE
Confidence            123222333332223345566677663  345654433

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=97.07  E-value=0.0023  Score=55.09  Aligned_cols=116  Identities=14%  Similarity=0.091  Sum_probs=67.7

Q ss_pred             CeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------C
Q 025075           21 FKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ--PQLENALT-------G   88 (258)
Q Consensus        21 ~KI~IIGa~--G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------~   88 (258)
                      +++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++..............+  .++++.++       .
T Consensus        22 k~vlVTGas~~~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   99 (285)
T 2p91_A           22 KRALITGVANERSIAYGIAKSFHREGA--QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS   99 (285)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            468999998  8999999999999987  8999998763 1112222211000011101111  12223332       7


Q ss_pred             CCEEEEcCCCCCC-----C--CCch---hhHHHHhHHHHHHHHHHhhhhC--CCcEEEEecC
Q 025075           89 MDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~-----~--g~~r---~d~~~~n~~i~~~i~~~i~~~~--p~a~viv~tN  138 (258)
                      .|++|.+||....     +  ..+.   ...+..|+.-...+++.+.++-  ..+.||++|.
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS  161 (285)
T 2p91_A          100 LDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSY  161 (285)
T ss_dssp             CCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEEC
T ss_pred             CCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEcc
Confidence            8999999997532     1  1121   2355667766666666665542  2467777764

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.06  E-value=0.0021  Score=58.33  Aligned_cols=105  Identities=24%  Similarity=0.245  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCe-----EEEE----------eCCCch
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAV-----VRGF----------LGQPQL   82 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~-----v~~~----------~~~~d~   82 (258)
                      ++.||+|||+ |.+|...+..+...|.  +|..+|++..+. .+.++.-......     ...+          ....++
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa--~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGA--KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHH
Confidence            4569999998 9999999998888786  899999987532 2222211000000     0000          001256


Q ss_pred             HhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           83 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ++.+++||+||.++..|.++...   ++      .++.++.+   .|.++|+.++-
T Consensus       260 ~e~l~~aDIVI~tv~iPg~~ap~---Lv------t~emv~~M---kpGsVIVDvA~  303 (381)
T 3p2y_A          260 EDAITKFDIVITTALVPGRPAPR---LV------TAAAATGM---QPGSVVVDLAG  303 (381)
T ss_dssp             HHHHTTCSEEEECCCCTTSCCCC---CB------CHHHHHTS---CTTCEEEETTG
T ss_pred             HHHHhcCCEEEECCCCCCcccce---ee------cHHHHhcC---CCCcEEEEEeC
Confidence            78899999999998766432210   11      13344444   47888888763

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=97.05  E-value=0.00099  Score=56.45  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=65.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCC---chHhhh------CCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENAL------TGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~---d~~~a~------~~aD   90 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+. ...++..     .+..+. .-+   ++++++      ...|
T Consensus        10 k~vlVTGas~gIG~aia~~l~~~G~--~V~~~~r~~~~-~~~~~~~-----~~~~~~~D~~~~~~v~~~~~~~~~~g~id   81 (257)
T 3tl3_A           10 AVAVVTGGASGLGLATTKRLLDAGA--QVVVLDIRGED-VVADLGD-----RARFAAADVTDEAAVASALDLAETMGTLR   81 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCHH-HHHHTCT-----TEEEEECCTTCHHHHHHHHHHHHHHSCEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCchHH-HHHhcCC-----ceEEEECCCCCHHHHHHHHHHHHHhCCCC
Confidence            4689999999999999999999987  89999985432 1112211     111111 111   222233      3899


Q ss_pred             EEEEcCCCCCCC-------CCc---hhhHHHHhHHH----HHHHHHHhhhh-------CCCcEEEEecCCCC
Q 025075           91 LVIIPAGVPRKP-------GMT---RDDLFNINAGI----VRTLCEGIAKC-------CPNATVNLISNPVN  141 (258)
Q Consensus        91 iVIi~ag~~~~~-------g~~---r~d~~~~n~~i----~~~i~~~i~~~-------~p~a~viv~tNPvd  141 (258)
                      ++|.+||.....       ..+   -.+.+..|+.-    .+.+.+.+.+.       ...+.||++|....
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~  153 (257)
T 3tl3_A           82 IVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAA  153 (257)
T ss_dssp             EEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC-
T ss_pred             EEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhh
Confidence            999999864210       011   23345556554    44444555442       33567777775443

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.05  E-value=0.0021  Score=54.85  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=49.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-------------------ChhHH--HHHhcCCCCCeEEEEeC-
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-------------------TPGVT--ADISHMDTGAVVRGFLG-   78 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-------------------~~g~~--~dl~~~~~~~~v~~~~~-   78 (258)
                      .||+|+|+ |.+|+.++..|+..|. ++|.++|.+.                   .+.++  ..+........+..+.. 
T Consensus        32 ~~VlVvG~-Gg~G~~va~~La~~Gv-~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~  109 (249)
T 1jw9_B           32 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNAL  109 (249)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CeEEEEee-CHHHHHHHHHHHHcCC-CeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEecc
Confidence            48999998 9999999999998885 6999999986                   22221  12222222223333221 


Q ss_pred             -C-CchHhhhCCCCEEEEcCC
Q 025075           79 -Q-PQLENALTGMDLVIIPAG   97 (258)
Q Consensus        79 -~-~d~~~a~~~aDiVIi~ag   97 (258)
                       + .++.+.++++|+||.+..
T Consensus       110 ~~~~~~~~~~~~~DvVi~~~d  130 (249)
T 1jw9_B          110 LDDAELAALIAEHDLVLDCTD  130 (249)
T ss_dssp             CCHHHHHHHHHTSSEEEECCS
T ss_pred             CCHhHHHHHHhCCCEEEEeCC
Confidence             1 134456789999999863

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.04  E-value=0.0012  Score=58.09  Aligned_cols=71  Identities=17%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...++|+|||+ |.+|..++..|... + ..+|.+||+++++...  +...... .+..   ..+++++++++|+||++.
T Consensus       133 ~~~~~igiIG~-G~~g~~~a~~l~~~~g-~~~V~v~dr~~~~~~~--l~~~~~~-~~~~---~~~~~e~v~~aDiVi~at  204 (312)
T 2i99_A          133 PSSEVLCILGA-GVQAYSHYEIFTEQFS-FKEVRIWNRTKENAEK--FADTVQG-EVRV---CSSVQEAVAGADVIITVT  204 (312)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHHCC-CSEEEEECSSHHHHHH--HHHHSSS-CCEE---CSSHHHHHTTCSEEEECC
T ss_pred             CCCcEEEEECC-cHHHHHHHHHHHHhCC-CcEEEEEcCCHHHHHH--HHHHhhC-CeEE---eCCHHHHHhcCCEEEEEe
Confidence            34579999998 99999999888764 5 3589999998653322  2211000 1221   346788999999999985

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.04  E-value=0.0012  Score=56.01  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=29.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      ..|||+|||+ |.+|.+++..|...|+  +|..||.
T Consensus         5 ~~mkI~IIG~-G~~G~sLA~~L~~~G~--~V~~~~~   37 (232)
T 3dfu_A            5 PRLRVGIFDD-GSSTVNMAEKLDSVGH--YVTVLHA   37 (232)
T ss_dssp             CCCEEEEECC-SCCCSCHHHHHHHTTC--EEEECSS
T ss_pred             CCcEEEEEee-CHHHHHHHHHHHHCCC--EEEEecC
Confidence            4579999998 9999999999999997  8999986

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.04  E-value=0.0021  Score=58.03  Aligned_cols=96  Identities=21%  Similarity=0.321  Sum_probs=62.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..+...|.  +|..||+........+.   .    +. .   .++++.++.||+|+++....
T Consensus       176 gktvGIIGl-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~---g----~~-~---~~l~ell~~aDvV~l~~Plt  241 (365)
T 4hy3_A          176 GSEIGIVGF-GDLGKALRRVLSGFRA--RIRVFDPWLPRSMLEEN---G----VE-P---ASLEDVLTKSDFIFVVAAVT  241 (365)
T ss_dssp             SSEEEEECC-SHHHHHHHHHHTTSCC--EEEEECSSSCHHHHHHT---T----CE-E---CCHHHHHHSCSEEEECSCSS
T ss_pred             CCEEEEecC-CcccHHHHHhhhhCCC--EEEEECCCCCHHHHhhc---C----ee-e---CCHHHHHhcCCEEEEcCcCC
Confidence            369999998 9999999999987777  89999987532222111   1    11 1   25788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~  142 (258)
                        + +++. ++  |    .   +.+....|++++|+++  .++|.
T Consensus       242 --~-~T~~-li--~----~---~~l~~mk~gailIN~aRG~~vde  273 (365)
T 4hy3_A          242 --S-ENKR-FL--G----A---EAFSSMRRGAAFILLSRADVVDF  273 (365)
T ss_dssp             --C-C----CC--C----H---HHHHTSCTTCEEEECSCGGGSCH
T ss_pred             --H-HHHh-hc--C----H---HHHhcCCCCcEEEECcCCchhCH
Confidence              1 1111 11  1    1   2244446899999986  56763

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.03  E-value=0.0022  Score=57.56  Aligned_cols=32  Identities=34%  Similarity=0.607  Sum_probs=26.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY   52 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~   52 (258)
                      ++||+|+||+|.+|..++..|...+.+ +|+.+
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~-ev~~i   39 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMF-ELTAL   39 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSE-EEEEE
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCC-EEEEE
Confidence            469999998899999999988776543 67655

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.03  E-value=0.012  Score=50.15  Aligned_cols=115  Identities=16%  Similarity=0.212  Sum_probs=68.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe--CCCchHhhh--CCCCEEEEcCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENAL--TGMDLVIIPAG   97 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~~~d~~~a~--~~aDiVIi~ag   97 (258)
                      .+.|+||++.+|..++..|+..|.  .|++.|++..+.....+.............  ...+.++.+  -..|++|..||
T Consensus        11 valVTGas~GIG~aiA~~la~~Ga--~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVNNAG   88 (247)
T 4hp8_A           11 KALVTGANTGLGQAIAVGLAAAGA--EVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVNNAG   88 (247)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEECCC
T ss_pred             EEEEeCcCCHHHHHHHHHHHHcCC--EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEECCC
Confidence            567889999999999999999997  899999986532222232221111111011  111111222  25799999999


Q ss_pred             CCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecC
Q 025075           98 VPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ......   .+.   ...+.-|+.    ..+..++.+.+.+..+.||+++.
T Consensus        89 i~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS  139 (247)
T 4hp8_A           89 IIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIAS  139 (247)
T ss_dssp             CCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            754322   122   223455544    45667777777776788888764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=97.03  E-value=0.0019  Score=55.37  Aligned_cols=117  Identities=15%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             CCeEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCC--CchHhhhC-------
Q 025075           20 GFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ--PQLENALT-------   87 (258)
Q Consensus        20 ~~KI~IIGa~--G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~--~d~~~a~~-------   87 (258)
                      .+++.|+||+  |.+|.+++..|+..|.  +|++.|++.. .....++..............+  .++++.++       
T Consensus         6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            6 GKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3579999998  8999999999999987  8999998864 1122223211000111111111  12222332       


Q ss_pred             CCCEEEEcCCCCCC-----C--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRK-----P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-----~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      ..|++|.+||....     +  ..+.   ...+..|+.-...+++.+.++- +.+.||++|.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS  145 (275)
T 2pd4_A           84 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY  145 (275)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence            67999999987532     1  1121   2356667777777776666542 2367777764

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.02  E-value=0.0098  Score=46.04  Aligned_cols=83  Identities=10%  Similarity=0.045  Sum_probs=52.2

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~---G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +.+|+|||++   |.+|..++..|...|+  +  +|+.++....   +.      .+..   ..++.+..+++|+++++.
T Consensus        14 p~~IavIGaS~~~g~~G~~~~~~L~~~G~--~--V~~vnp~~~~---i~------G~~~---~~s~~el~~~vDlvii~v   77 (138)
T 1y81_A           14 FRKIALVGASKNPAKYGNIILKDLLSKGF--E--VLPVNPNYDE---IE------GLKC---YRSVRELPKDVDVIVFVV   77 (138)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTC--E--EEEECTTCSE---ET------TEEC---BSSGGGSCTTCCEEEECS
T ss_pred             CCeEEEEeecCCCCCHHHHHHHHHHHCCC--E--EEEeCCCCCe---EC------Ceee---cCCHHHhCCCCCEEEEEe
Confidence            4689999975   8999999999998887  6  4444443111   11      1221   134556567899999985


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi  134 (258)
                      .                .+.+.++++.+.+.+.+++++
T Consensus        78 p----------------~~~v~~v~~~~~~~g~~~i~~   99 (138)
T 1y81_A           78 P----------------PKVGLQVAKEAVEAGFKKLWF   99 (138)
T ss_dssp             C----------------HHHHHHHHHHHHHTTCCEEEE
T ss_pred             C----------------HHHHHHHHHHHHHcCCCEEEE
Confidence            2                223455555565666666444

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.01  E-value=0.00063  Score=61.35  Aligned_cols=76  Identities=16%  Similarity=0.242  Sum_probs=44.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeE-EEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV-RGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v-~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +++||+|+||+|.+|..++..|...+.+ +|+.+......+...+-.|..+...+ ..+.. .+ ++.++++|+||++.|
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~-elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~-~~-~~~~~~vDvVf~atp   91 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHF-QVTLMTADRKAGQSMESVFPHLRAQKLPTLVS-VK-DADFSTVDAVFCCLP   91 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSE-EEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBC-GG-GCCGGGCSEEEECCC
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCc-EEEEEeCchhcCCCHHHhCchhcCccccccee-cc-hhHhcCCCEEEEcCC
Confidence            4469999998899999999998877654 56655433333333332222211110 00111 12 345678999999875

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.01  E-value=0.0025  Score=55.75  Aligned_cols=88  Identities=15%  Similarity=0.152  Sum_probs=56.5

Q ss_pred             HHHhHHhhc-CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCchH
Q 025075            7 LRQAKCRAK-GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQLE   83 (258)
Q Consensus         7 ~~~~~~~~~-~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d~~   83 (258)
                      |.+...+.- -..+.++|+|+|+ |.+|.+++..|...|. .+|.++|++.++.+.+  ++.. ... .+  .. ..++.
T Consensus       127 ~~~~l~~~~~~~l~~~~vlVlGa-Gg~g~aia~~L~~~G~-~~V~v~nR~~~ka~~la~~~~~-~~~-~~--~~-~~~~~  199 (297)
T 2egg_A          127 YVQALEEEMNITLDGKRILVIGA-GGGARGIYFSLLSTAA-ERIDMANRTVEKAERLVREGDE-RRS-AY--FS-LAEAE  199 (297)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHTTTC-SEEEEECSSHHHHHHHHHHSCS-SSC-CE--EC-HHHHH
T ss_pred             HHHHHHHhCCCCCCCCEEEEECc-HHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHhhh-ccC-ce--ee-HHHHH
Confidence            445554332 1334569999998 9999999999998874 5899999976543322  1111 000 11  11 12456


Q ss_pred             hhhCCCCEEEEcCCCCCC
Q 025075           84 NALTGMDLVIIPAGVPRK  101 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~  101 (258)
                      ++++++|+||.+.+.+..
T Consensus       200 ~~~~~aDivIn~t~~~~~  217 (297)
T 2egg_A          200 TRLAEYDIIINTTSVGMH  217 (297)
T ss_dssp             HTGGGCSEEEECSCTTCS
T ss_pred             hhhccCCEEEECCCCCCC
Confidence            778999999999876543

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.01  E-value=0.0048  Score=57.02  Aligned_cols=102  Identities=17%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             HHhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            8 RQAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         8 ~~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      ..++.|..+ ....++|+|+|. |.||..++..+...|.  +|..+|+++...... ..+.     ...    .++++++
T Consensus       234 vdgI~Ratg~~L~GKTVgVIG~-G~IGr~vA~~lrafGa--~Viv~d~dp~~a~~A-~~~G-----~~v----v~LeElL  300 (464)
T 3n58_A          234 VDGIRRGTDVMMAGKVAVVCGY-GDVGKGSAQSLAGAGA--RVKVTEVDPICALQA-AMDG-----FEV----VTLDDAA  300 (464)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHH-HHTT-----CEE----CCHHHHG
T ss_pred             HHHHHHhcCCcccCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEEeCCcchhhHH-HhcC-----cee----ccHHHHH
Confidence            345555553 233458999998 9999999999988886  899999876322111 1111     111    2467899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +.||+|+.+.|..   +.-           -.+..   ....|.+++++++..
T Consensus       301 ~~ADIVv~atgt~---~lI-----------~~e~l---~~MK~GAILINvGRg  336 (464)
T 3n58_A          301 STADIVVTTTGNK---DVI-----------TIDHM---RKMKDMCIVGNIGHF  336 (464)
T ss_dssp             GGCSEEEECCSSS---SSB-----------CHHHH---HHSCTTEEEEECSSS
T ss_pred             hhCCEEEECCCCc---ccc-----------CHHHH---hcCCCCeEEEEcCCC
Confidence            9999999876421   110           02223   333588999998754

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=97.00  E-value=0.0073  Score=51.61  Aligned_cols=155  Identities=14%  Similarity=0.128  Sum_probs=82.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.+.... ..  ...++.....  .+..+. .-+|   +++.+       
T Consensus        28 k~~lVTGas~GIG~aia~~la~~G~--~Vv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~v~~~~~~~~~~~  103 (267)
T 3u5t_A           28 KVAIVTGASRGIGAAIAARLASDGF--TVVINYAGKAAAAEEVAGKIEAAGG--KALTAQADVSDPAAVRRLFATAEEAF  103 (267)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHTC--EEEEEESSCSHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcCC--eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3688999999999999999999887  7888755443 11  1222222211  122111 1122   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      ...|++|.+||......   .+.   ...+..|+.-...+++.+.++- ..+.||++|....           .. +.|.
T Consensus       104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~-----------~~-~~~~  171 (267)
T 3u5t_A          104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQV-----------GL-LHPS  171 (267)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHH-----------HH-CCTT
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhh-----------cc-CCCC
Confidence            37899999999753221   111   2345567665555555544432 3467777764221           01 1333


Q ss_pred             CcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      .-.++.+...-..+-+.++.+++  +..|++..+
T Consensus       172 ~~~Y~asKaa~~~l~~~la~e~~--~~gI~vn~v  203 (267)
T 3u5t_A          172 YGIYAAAKAGVEAMTHVLSKELR--GRDITVNAV  203 (267)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTT--TSCCEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEE
Confidence            32333333333456677788874  445554433

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.00  E-value=0.00074  Score=60.07  Aligned_cols=95  Identities=21%  Similarity=0.256  Sum_probs=61.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||++.....     .  .. ..  .. ..++++.+++||+|+++.-. 
T Consensus       137 gktvGIiGl-G~IG~~vA~~l~~~G~--~V~~~dr~~~~~~-----~--~~-~~--~~-~~~l~ell~~aDvV~l~lPl-  201 (324)
T 3evt_A          137 GQQLLIYGT-GQIGQSLAAKASALGM--HVIGVNTTGHPAD-----H--FH-ET--VA-FTATADALATANFIVNALPL-  201 (324)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSCCCCT-----T--CS-EE--EE-GGGCHHHHHHCSEEEECCCC-
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCC--EEEEECCCcchhH-----h--Hh-hc--cc-cCCHHHHHhhCCEEEEcCCC-
Confidence            468999998 9999999999998887  9999998753211     0  00 11  11 23567899999999998621 


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                       .+ +++. ++  |    .   +.+....|.+++|+++  .++|
T Consensus       202 -t~-~t~~-li--~----~---~~l~~mk~gailIN~aRG~~vd  233 (324)
T 3evt_A          202 -TP-TTHH-LF--S----T---ELFQQTKQQPMLINIGRGPAVD  233 (324)
T ss_dssp             -CG-GGTT-CB--S----H---HHHHTCCSCCEEEECSCGGGBC
T ss_pred             -ch-HHHH-hc--C----H---HHHhcCCCCCEEEEcCCChhhh
Confidence             11 1111 11  1    1   2233445889999986  4566

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.99  E-value=0.0016  Score=59.18  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=75.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC----CChhH------HHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV----NTPGV------TADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~----~~~g~------~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      +.+..||.|+|| |.+|..++..|...|. ++|.++|++    ..+..      ...+.+.. . .   .....++++++
T Consensus       189 ~l~~~kVVv~GA-GaAG~~iAkll~~~G~-~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~-~-~---~~~~~~L~eav  261 (388)
T 1vl6_A          189 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARIT-N-P---ERLSGDLETAL  261 (388)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTS-C-T---TCCCSCHHHHH
T ss_pred             CCCCcEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEECCCcccCCCcccccCHHHHHHHHhh-h-c---cCchhhHHHHH
Confidence            456679999998 9999999998888774 689999997    32210      11222211 1 1   11235789999


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t  166 (258)
                      +++|++|=+.+ |   +.-           .+++++.+.   ++.+|+=.+||.--.++   +.+.+.+    ..++++.
T Consensus       262 ~~ADVlIG~Sa-p---~l~-----------t~emVk~Ma---~~pIIfalSNPt~E~~p---~~a~~~g----~~i~atG  316 (388)
T 1vl6_A          262 EGADFFIGVSR-G---NIL-----------KPEWIKKMS---RKPVIFALANPVPEIDP---ELAREAG----AFIVATG  316 (388)
T ss_dssp             TTCSEEEECSC-S---SCS-----------CHHHHTTSC---SSCEEEECCSSSCSSCH---HHHHHTT----CSEEEES
T ss_pred             ccCCEEEEeCC-C---Ccc-----------CHHHHHhcC---CCCEEEEcCCCCCCCCH---HHHHHhc----CeEEEeC
Confidence            99999887754 3   321           144555543   56688888999865443   4444432    3677764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.98  E-value=0.0012  Score=59.29  Aligned_cols=97  Identities=16%  Similarity=0.170  Sum_probs=62.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+.......   ....    +..   ..++++.+++||+|+++....
T Consensus       160 g~tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~---~~~g----~~~---~~~l~ell~~aDiV~l~~Plt  226 (352)
T 3gg9_A          160 GQTLGIFGY-GKIGQLVAGYGRAFGM--NVLVWGRENSKERA---RADG----FAV---AESKDALFEQSDVLSVHLRLN  226 (352)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSHHHHHHH---HHTT----CEE---CSSHHHHHHHCSEEEECCCCS
T ss_pred             CCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEECCCCCHHHH---HhcC----ceE---eCCHHHHHhhCCEEEEeccCc
Confidence            469999998 9999999999988887  99999985321111   1111    111   246788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~  142 (258)
                        + +++. ++  |    .   +.+....|++++|+++  .++|.
T Consensus       227 --~-~t~~-li--~----~---~~l~~mk~gailIN~aRg~~vd~  258 (352)
T 3gg9_A          227 --D-ETRS-II--T----V---ADLTRMKPTALFVNTSRAELVEE  258 (352)
T ss_dssp             --T-TTTT-CB--C----H---HHHTTSCTTCEEEECSCGGGBCT
T ss_pred             --H-HHHH-hh--C----H---HHHhhCCCCcEEEECCCchhhcH
Confidence              1 1111 11  1    1   2234446889999987  45664

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=96.98  E-value=0.0011  Score=55.02  Aligned_cols=103  Identities=20%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++..    .|+.+..   .+      ..+-+.+...|++|.+||...
T Consensus         7 k~vlVTGas~gIG~~~a~~l~~~G~--~V~~~~r~~~----~D~~~~~---~v------~~~~~~~g~id~lv~nAg~~~   71 (223)
T 3uce_A            7 TVYVVLGGTSGIGAELAKQLESEHT--IVHVASRQTG----LDISDEK---SV------YHYFETIGAFDHLIVTAGSYA   71 (223)
T ss_dssp             EEEEEETTTSHHHHHHHHHHCSTTE--EEEEESGGGT----CCTTCHH---HH------HHHHHHHCSEEEEEECCCCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEecCCcc----cCCCCHH---HH------HHHHHHhCCCCEEEECCCCCC
Confidence            4688999999999999999999887  8999987643    3333221   00      011233457899999998652


Q ss_pred             CCC----Cch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075          101 KPG----MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus       101 ~~g----~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      ..+    .+.   ...+..|+.-...+.+.+.++- +.+.|+++|.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS  117 (223)
T 3uce_A           72 PAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSG  117 (223)
T ss_dssp             CCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecc
Confidence            221    122   2345667776666776666542 3467777764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.98  E-value=0.0025  Score=54.73  Aligned_cols=115  Identities=11%  Similarity=0.051  Sum_probs=65.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---hHhhh-------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENAL-------   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------   86 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+.  ....++.... ...+..+. .-+|   .++.+       
T Consensus        27 ~k~~lVTGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           27 DKVAFITGGGSGIGFRIAEIFMRHGC--HTVIASRSLPRVLTAARKLAGAT-GRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHHH-SSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhc-CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999997  89999998642  1222232110 11222111 1112   22223       


Q ss_pred             CCCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHH----HhhhhCCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~----~i~~~~p~a~viv~tN  138 (258)
                      ...|++|.+||......   .+.   ...+..|+.-...+.+    .+.+. ..+.||++|.
T Consensus       104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~isS  164 (277)
T 4fc7_A          104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRD-HGGVIVNITA  164 (277)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHH-HCEEEEEECC
T ss_pred             CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCEEEEECc
Confidence            37899999998643221   111   2345556554444444    43333 3567777764

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.97  E-value=0.00047  Score=63.06  Aligned_cols=77  Identities=22%  Similarity=0.157  Sum_probs=49.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCChhH--HHHHhcCC-CCCeEEEEeC--CCchHhhhCC--CCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGV--TADISHMD-TGAVVRGFLG--QPQLENALTG--MDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~-~ei~L~D~~~~~g~--~~dl~~~~-~~~~v~~~~~--~~d~~~a~~~--aDi   91 (258)
                      |+||+|+|| |.+|+.++..|.+.+.. .+|.+.|++.++..  +.++.... ..........  ..++++.+++  +|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            469999998 99999999999987743 58999999875332  22232210 0011111111  1245666776  999


Q ss_pred             EEEcCC
Q 025075           92 VIIPAG   97 (258)
Q Consensus        92 VIi~ag   97 (258)
                      ||.+++
T Consensus        80 Vin~ag   85 (405)
T 4ina_A           80 VLNIAL   85 (405)
T ss_dssp             EEECSC
T ss_pred             EEECCC
Confidence            999986

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.96  E-value=0.0015  Score=55.69  Aligned_cols=114  Identities=14%  Similarity=0.094  Sum_probs=66.4

Q ss_pred             CeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-CCCeEEEEeCC--CchHhhhC--------
Q 025075           21 FKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQ--PQLENALT--------   87 (258)
Q Consensus        21 ~KI~IIGa--~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~~--~d~~~a~~--------   87 (258)
                      +++.|+||  +|.+|.+++..|+..|.  +|++.|++.... ..++.+.. ..........+  .++++.++        
T Consensus         8 k~vlVTGa~~s~gIG~aia~~l~~~G~--~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            8 KRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRLRL-IQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             CEEEECCCSSTTSHHHHHHHHHHHTTC--EEEEEECSCHHH-HHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCchHHHHHHHHHHCCC--EEEEEecChHHH-HHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47899998  89999999999999997  899999876421 11122111 01111111111  12223333        


Q ss_pred             --CCCEEEEcCCCCCC------C--CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEec
Q 025075           88 --GMDLVIIPAGVPRK------P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLIS  137 (258)
Q Consensus        88 --~aDiVIi~ag~~~~------~--g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~t  137 (258)
                        ..|++|.+||....      +  ..+.   ...+..|+.-...+++.+.++- +.+.||++|
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is  148 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMD  148 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEc
Confidence              78999999987531      1  1122   2345667766666666665442 246676665

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=96.96  E-value=0.00085  Score=56.41  Aligned_cols=111  Identities=15%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhC-----CCCE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT-----GMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aDi   91 (258)
                      +++++.|+||+|.+|.+++..|+. .+.  .|++.|+++. ..........    .+   ....++++.++     ..|+
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~--~v~~~~~~~~~~~~~~~~~~~----Dv---~~~~~v~~~~~~~~~~~id~   73 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNH--TVINIDIQQSFSAENLKFIKA----DL---TKQQDITNVLDIIKNVSFDG   73 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTE--EEEEEESSCCCCCTTEEEEEC----CT---TCHHHHHHHHHHTTTCCEEE
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCc--EEEEeccccccccccceEEec----Cc---CCHHHHHHHHHHHHhCCCCE
Confidence            445799999999999999999988 665  8899998764 1111000000    00   00112222332     7899


Q ss_pred             EEEcCCCCCCC---CCch---hhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075           92 VIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus        92 VIi~ag~~~~~---g~~r---~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                      +|..||.....   ..+.   ...+..|+.-...+++.+.++- ..+.||+++.
T Consensus        74 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS  127 (244)
T 4e4y_A           74 IFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGS  127 (244)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECC
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECC
Confidence            99999974321   1222   2346677777777777766553 2356766654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.96  E-value=0.0022  Score=56.39  Aligned_cols=93  Identities=19%  Similarity=0.193  Sum_probs=61.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.+|+.++..|...|.  +|..||++.. .   +    ..   .    ...++++.++.||+|+++..
T Consensus       122 l~g~~vgIIG~-G~IG~~~A~~l~~~G~--~V~~~dr~~~-~---~----~~---~----~~~~l~ell~~aDvV~l~~P  183 (303)
T 1qp8_A          122 IQGEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPK-E---G----PW---R----FTNSLEEALREARAAVCALP  183 (303)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCC-C---S----SS---C----CBSCSHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcc-c---c----Cc---c----cCCCHHHHHhhCCEEEEeCc
Confidence            34469999998 9999999999988887  8999998654 1   1    11   0    12356788999999999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ..  + .++. ++  |    .   +.+....|++++++++.  ++|
T Consensus       184 ~~--~-~t~~-~i--~----~---~~l~~mk~gailin~srg~~vd  216 (303)
T 1qp8_A          184 LN--K-HTRG-LV--K----Y---QHLALMAEDAVFVNVGRAEVLD  216 (303)
T ss_dssp             CS--T-TTTT-CB--C----H---HHHTTSCTTCEEEECSCGGGBC
T ss_pred             Cc--h-HHHH-Hh--C----H---HHHhhCCCCCEEEECCCCcccC
Confidence            21  1 1111 11  1    1   22334457899999864  455

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=96.96  E-value=0.0013  Score=58.53  Aligned_cols=66  Identities=26%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.+|+.++..|...|.  +|..||++.......++       .+. .   .++++.+++||+|+++..
T Consensus       144 l~g~~vgIIG~-G~iG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~-------g~~-~---~~l~e~l~~aDiVil~vp  209 (333)
T 2d0i_A          144 LYGKKVGILGM-GAIGKAIARRLIPFGV--KLYYWSRHRKVNVEKEL-------KAR-Y---MDIDELLEKSDIVILALP  209 (333)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCHHHHHHH-------TEE-E---CCHHHHHHHCSEEEECCC
T ss_pred             CCcCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchhhhhhc-------Cce-e---cCHHHHHhhCCEEEEcCC
Confidence            34569999998 9999999999988887  89999998754222111       122 1   256788999999999874

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.95  E-value=0.00085  Score=60.30  Aligned_cols=77  Identities=17%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..|.||+|+||+|.+|.-+...|...+.+ ||.++......|+.++-.+..+...+.. . ..|.++...++|+||++.+
T Consensus        11 ~~~~~V~IvGAtG~vG~ellrlL~~hP~~-el~~l~S~~~aG~~~~~~~p~~~~~l~~-~-~~~~~~~~~~~Dvvf~alp   87 (351)
T 1vkn_A           11 HHMIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSIL-S-EFDPEKVSKNCDVLFTALP   87 (351)
T ss_dssp             -CCEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCBC-B-CCCHHHHHHHCSEEEECCS
T ss_pred             cceeEEEEECCCCHHHHHHHHHHHcCCCc-EEEEEeCcccccCChHHhChhhccCceE-E-eCCHHHhhcCCCEEEECCC
Confidence            45679999999999999999999988754 7888876544444333111111111211 1 1233333488999999875

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.95  E-value=0.0019  Score=54.74  Aligned_cols=113  Identities=16%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe-CCCc---hHhhh-------C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENAL-------T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~-~~~d---~~~a~-------~   87 (258)
                      +++.|+||+|.+|.+++..|+..|.--.|++.+++++...  ..++..     .+..+. .-+|   .++.+       .
T Consensus         3 k~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (254)
T 3kzv_A            3 KVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGD-----RFFYVVGDITEDSVLKQLVNAAVKGHG   77 (254)
T ss_dssp             CEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGG-----GEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCC-----ceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            4688999999999999999987653237888888764211  111211     111111 1112   22223       3


Q ss_pred             CCCEEEEcCCCCCC--C--CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           88 GMDLVIIPAGVPRK--P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        88 ~aDiVIi~ag~~~~--~--g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ..|++|.+||....  +  ..+.   ...+..|+.    +.+.+.+.+.+..  +.|+++|...
T Consensus        78 ~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~--g~iv~isS~~  139 (254)
T 3kzv_A           78 KIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN--GNVVFVSSDA  139 (254)
T ss_dssp             CCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEECCSC
T ss_pred             CccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC--CeEEEEcCch
Confidence            78999999997432  1  1122   223445544    4455555556543  6777776544

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.94  E-value=0.00057  Score=63.45  Aligned_cols=73  Identities=16%  Similarity=0.078  Sum_probs=48.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEE--eCC--CchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF--LGQ--PQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~--~~~--~d~~~a~~~aDiVIi   94 (258)
                      ++++|.|+|+ |++|.+++..|...|.  +|+++|++.++..  ++.... . .+..+  ..+  .++.++++++|+||+
T Consensus         2 ~~k~VlViGa-G~iG~~ia~~L~~~G~--~V~v~~R~~~~a~--~la~~~-~-~~~~~~~Dv~d~~~l~~~l~~~DvVIn   74 (450)
T 1ff9_A            2 ATKSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLESAK--KLSAGV-Q-HSTPISLDVNDDAALDAEVAKHDLVIS   74 (450)
T ss_dssp             CCCEEEEECC-STTHHHHHHHHHTTTC--EEEEEESSHHHHH--HTTTTC-T-TEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCcC--EEEEEECCHHHHH--HHHHhc-C-CceEEEeecCCHHHHHHHHcCCcEEEE
Confidence            4568999996 9999999999998885  7999998754322  222211 1 11111  111  234567889999999


Q ss_pred             cCCC
Q 025075           95 PAGV   98 (258)
Q Consensus        95 ~ag~   98 (258)
                      +++.
T Consensus        75 ~a~~   78 (450)
T 1ff9_A           75 LIPY   78 (450)
T ss_dssp             CCC-
T ss_pred             CCcc
Confidence            9864

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=96.94  E-value=0.0023  Score=60.55  Aligned_cols=65  Identities=23%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++.....+.++.       +..    .++++.+++||+|+++..
T Consensus       141 ~g~~vgIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-------~~~----~~l~e~~~~aDvV~l~~P  205 (529)
T 1ygy_A          141 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IEL----LSLDDLLARADFISVHLP  205 (529)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CEE----CCHHHHHHHCSEEEECCC
T ss_pred             CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------cEE----cCHHHHHhcCCEEEECCC
Confidence            3469999998 9999999999998887  899999876432222221       111    156788999999999863

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.94  E-value=0.0043  Score=58.02  Aligned_cols=67  Identities=13%  Similarity=0.217  Sum_probs=44.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhC------CCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKIN------PLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~------~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      +||+|||. |.+|.+++..|...      |+  +|++.+....+  ..+.+..-......      ..++.+++++||+|
T Consensus        55 KkIgIIGl-GsMG~AmA~nLr~s~~~~g~G~--~ViVg~r~~sks~e~A~e~G~~v~d~t------a~s~aEAa~~ADVV  125 (525)
T 3fr7_A           55 KQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKIGLRKGSKSFDEARAAGFTEESGT------LGDIWETVSGSDLV  125 (525)
T ss_dssp             SEEEEECC-TTHHHHHHHHHHHHHHHTTCCC--EEEEEECTTCSCHHHHHHTTCCTTTTC------EEEHHHHHHHCSEE
T ss_pred             CEEEEEeE-hHHHHHHHHHHHhcccccCCCC--EEEEEeCCchhhHHHHHHCCCEEecCC------CCCHHHHHhcCCEE
Confidence            59999998 99999999999887      77  66666554322  22221111100000      12467899999999


Q ss_pred             EEcC
Q 025075           93 IIPA   96 (258)
Q Consensus        93 Ii~a   96 (258)
                      |++.
T Consensus       126 ILaV  129 (525)
T 3fr7_A          126 LLLI  129 (525)
T ss_dssp             EECS
T ss_pred             EECC
Confidence            9986

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=96.93  E-value=0.0029  Score=54.84  Aligned_cols=73  Identities=22%  Similarity=0.238  Sum_probs=44.8

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHh-CCCCcEEE-EEeCCCChhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLH-LYDVVNTPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~-L~D~~~~~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +++|||+|+|++|.+|+.++..+.. .++  +|+ .+|.+.......|+....  ....+..   ++|+++.++++|+||
T Consensus         3 ~~~mkV~V~Ga~G~mG~~~~~~~~~~~~~--elva~~d~~~~~~~g~d~~~~~g~~~~~v~~---~~dl~~~l~~~DvVI   77 (273)
T 1dih_A            3 DANIRVAIAGAGGRMGRQLIQAALALEGV--QLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFI   77 (273)
T ss_dssp             CCBEEEEETTTTSHHHHHHHHHHHHSTTE--ECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEE
T ss_pred             CCCcEEEEECCCCHHHHHHHHHHHhCCCC--EEEEEEecCchhhhhhhHHHHcCCCcCCcee---cCCHHHHhcCCCEEE
Confidence            4568999999889999999887764 444  565 888765321111222111  0111221   246667788999999


Q ss_pred             Ec
Q 025075           94 IP   95 (258)
Q Consensus        94 i~   95 (258)
                      -.
T Consensus        78 Df   79 (273)
T 1dih_A           78 DF   79 (273)
T ss_dssp             EC
T ss_pred             Ec
Confidence            43

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=96.92  E-value=0.002  Score=57.34  Aligned_cols=96  Identities=19%  Similarity=0.197  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+... .....++.       +. .   .++++.++.||+|+++...
T Consensus       145 g~tvGIIG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~~~~g-------~~-~---~~l~ell~~aDvV~l~~P~  210 (330)
T 4e5n_A          145 NATVGFLGM-GAIGLAMADRLQGWGA--TLQYHEAKALDTQTEQRLG-------LR-Q---VACSELFASSDFILLALPL  210 (330)
T ss_dssp             TCEEEEECC-SHHHHHHHHHTTTSCC--EEEEECSSCCCHHHHHHHT-------EE-E---CCHHHHHHHCSEEEECCCC
T ss_pred             CCEEEEEee-CHHHHHHHHHHHHCCC--EEEEECCCCCcHhHHHhcC-------ce-e---CCHHHHHhhCCEEEEcCCC
Confidence            469999998 9999999999988887  8999999763 22222221       11 1   2577889999999998632


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNS  142 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd~  142 (258)
                      .  + +++. ++  |    .   +.+....|++++|+++  .++|.
T Consensus       211 t--~-~t~~-li--~----~---~~l~~mk~gailIN~arg~~vd~  243 (330)
T 4e5n_A          211 N--A-DTLH-LV--N----A---ELLALVRPGALLVNPCRGSVVDE  243 (330)
T ss_dssp             S--T-TTTT-CB--C----H---HHHTTSCTTEEEEECSCGGGBCH
T ss_pred             C--H-HHHH-Hh--C----H---HHHhhCCCCcEEEECCCCchhCH
Confidence            1  1 1111 11  1    1   2244445889999986  45663

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.91  E-value=0.003  Score=56.57  Aligned_cols=70  Identities=19%  Similarity=0.384  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +||+|+||+|.+|.-+...|..+++ ..++.++......|+.+.+..    ..+.... . + .+.++++|+||++.|
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~----~~~~~~~-~-~-~~~~~~~Dvvf~a~~   72 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRG----QEIEVED-A-E-TADPSGLDIALFSAG   72 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETT----EEEEEEE-T-T-TSCCTTCSEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecC----CceEEEe-C-C-HHHhccCCEEEECCC
Confidence            6999999999999999998888742 237888876544343322211    1222111 1 2 245789999999875

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=96.91  E-value=0.0025  Score=57.19  Aligned_cols=74  Identities=18%  Similarity=0.317  Sum_probs=49.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...+|+|||+ |.+|...+..|....-+.+|.+||++.++.+.  .++... ....+..   ..++++++++||+||++.
T Consensus       128 ~~~~v~iIGa-G~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~-~g~~~~~---~~~~~eav~~aDiVi~aT  202 (350)
T 1x7d_A          128 NARKMALIGN-GAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  202 (350)
T ss_dssp             TCCEEEEECC-STTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             cCCeEEEECC-cHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhc-cCceEEE---eCCHHHHHhcCCEEEEec
Confidence            4468999998 99999988776542224699999998753332  222221 1112222   356788999999999985


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      .
T Consensus       203 p  203 (350)
T 1x7d_A          203 A  203 (350)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=96.90  E-value=0.0054  Score=51.85  Aligned_cols=115  Identities=10%  Similarity=0.066  Sum_probs=64.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hHhhhC------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LENALT------   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~------   87 (258)
                      ++++.|+||+|.+|.+++..|+..|.  +|++.+.+...  ....++... ....+..+.. -+|   ++++++      
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY--SVTVTYHSDTTAMETMKETYKD-VEERLQFVQADVTKKEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHTGG-GGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC--EEEEEcCCChHHHHHHHHHHHh-cCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            45789999999999999999999997  89998776531  111122111 1112222211 112   233333      


Q ss_pred             -CCCEEEEcCCC--CCC-C--CCch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecC
Q 025075           88 -GMDLVIIPAGV--PRK-P--GMTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 -~aDiVIi~ag~--~~~-~--g~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ..|++|.+||.  ... +  ..+.   .+.+..|+.-    .+.+.+.+.+.. .+.|+++|.
T Consensus        84 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~g~iv~iss  146 (264)
T 3i4f_A           84 GKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQN-FGRIINYGF  146 (264)
T ss_dssp             SCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CCeEEEEee
Confidence             88999999993  211 1  1122   2334556544    444444445543 456666654

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.90  E-value=0.0049  Score=52.10  Aligned_cols=158  Identities=16%  Similarity=0.084  Sum_probs=83.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hHhhh---
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LENAL---   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~---~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~~a~---   86 (258)
                      +.+++.|+||+|.+|.+++..|+.   .|.  +|++.|++.+..  ...++........+..+. .-+|   +++.+   
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~   82 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC--eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHH
Confidence            345789999999999999999998   776  899999976421  122232110011222221 1112   22222   


Q ss_pred             -C-----CCC--EEEEcCCCCCCCC------Cch---hhHHHHhHHHHHHHHHHhhhhC-----CCcEEEEecCCCCCcH
Q 025075           87 -T-----GMD--LVIIPAGVPRKPG------MTR---DDLFNINAGIVRTLCEGIAKCC-----PNATVNLISNPVNSTV  144 (258)
Q Consensus        87 -~-----~aD--iVIi~ag~~~~~g------~~r---~d~~~~n~~i~~~i~~~i~~~~-----p~a~viv~tNPvd~~~  144 (258)
                       +     ..|  ++|.+||.....+      .+.   ...+..|+.-...+++.+.++-     ..+.||++|.-...  
T Consensus        83 ~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~--  160 (259)
T 1oaa_A           83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCAL--  160 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGT--
T ss_pred             HhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhc--
Confidence             1     357  9999999743211      121   2345667665555555554332     23667777653221  


Q ss_pred             HHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          145 PIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       145 ~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                               . +.|..-.++.+......+-+.++.+++  +  |++..+.
T Consensus       161 ---------~-~~~~~~~Y~asKaa~~~~~~~la~e~~--~--i~vn~v~  196 (259)
T 1oaa_A          161 ---------Q-PYKGWGLYCAGKAARDMLYQVLAAEEP--S--VRVLSYA  196 (259)
T ss_dssp             ---------S-CCTTCHHHHHHHHHHHHHHHHHHHHCT--T--EEEEEEE
T ss_pred             ---------C-CCCCccHHHHHHHHHHHHHHHHHhhCC--C--ceEEEec
Confidence                     0 122222233332223345667777774  2  7665554

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=96.89  E-value=0.0018  Score=56.50  Aligned_cols=70  Identities=10%  Similarity=0.123  Sum_probs=45.9

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           18 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ++++||+|||+ |.+|.. ++..|...+-+ +|+ ++|+++++.+..--.. ..  ..     .+|+++.++++|+|+++
T Consensus         4 M~~~~igiIG~-G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~-~~--~~-----~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            4 MKNIKMGMIGL-GSIAQKAYLPILTKSERF-EFVGAFTPNKVKREKICSDY-RI--MP-----FDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             -CCCEEEEECC-SHHHHHHTHHHHTSCSSS-EEEEEECSCHHHHHHHHHHH-TC--CB-----CSCHHHHHTTCSEEEEC
T ss_pred             cccCcEEEEec-CHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHc-CC--CC-----cCCHHHHHhcCCEEEEe
Confidence            45689999998 999996 77777764433 555 8999875433211111 11  11     24677888899999998


Q ss_pred             CC
Q 025075           96 AG   97 (258)
Q Consensus        96 ag   97 (258)
                      ..
T Consensus        74 tp   75 (308)
T 3uuw_A           74 SS   75 (308)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=96.87  E-value=0.0018  Score=57.27  Aligned_cols=73  Identities=16%  Similarity=0.242  Sum_probs=49.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...+|+|||+ |.+|...+..|.....+.+|.+||++.....+.++.... ...+.  . . ++++++++||+||.+..
T Consensus       120 ~~~~v~iIGa-G~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~-g~~~~--~-~-~~~eav~~aDIVi~aT~  192 (313)
T 3hdj_A          120 RSSVLGLFGA-GTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRC-GVPAR--M-A-APADIAAQADIVVTATR  192 (313)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHH-TSCEE--E-C-CHHHHHHHCSEEEECCC
T ss_pred             CCcEEEEECc-cHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhc-CCeEE--E-e-CHHHHHhhCCEEEEccC
Confidence            3468999997 999999988777532367999999983233333333211 11222  1 2 67899999999998864

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.86  E-value=0.00068  Score=58.14  Aligned_cols=112  Identities=19%  Similarity=0.222  Sum_probs=64.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-----HHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-----ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-----~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+....     .|+.+..   .+...  .....+.+...|++|.+
T Consensus        29 k~vlVTGas~gIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~~~~~--~~~~~~~~g~iD~lvnn  101 (266)
T 3uxy_A           29 KVALVTGAAGGIGGAVVTALRAAGA--RVAVADRAVAGIAADLHLPGDLREAA---YADGL--PGAVAAGLGRLDIVVNN  101 (266)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEECSSCCTTSCCSEECCCCTTSHH---HHHHH--HHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHhhhccCcCCCCHH---HHHHH--HHHHHHhcCCCCEEEEC
Confidence            4788999999999999999999997  89999987642110     0111100   00000  00112234589999999


Q ss_pred             CCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           96 AGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        96 ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ||......   .+.   ...+..|+.    +.+.+.+.+.+.. .+.||++|...
T Consensus       102 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~iv~isS~~  155 (266)
T 3uxy_A          102 AGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAG-GGAIVNVASCW  155 (266)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCSB
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEECCHH
Confidence            99754221   111   223455654    4444445455543 56777776543

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.86  E-value=0.0023  Score=55.11  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++.|+||+|.+|.+++..|+..|.  +|++.|++.+
T Consensus         6 k~~lVTGas~GIG~aia~~la~~G~--~V~~~~r~~~   40 (281)
T 3zv4_A            6 EVALITGGASGLGRALVDRFVAEGA--RVAVLDKSAE   40 (281)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCHH
Confidence            4789999999999999999999997  8999998764

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=96.86  E-value=0.0029  Score=54.20  Aligned_cols=79  Identities=11%  Similarity=0.145  Sum_probs=54.4

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      |.+..++. + .+. ||+|||+ |.+|.+++..|...|. .+|.++|++.++.  .++.+..   ..  .. ..++.+.+
T Consensus        98 ~~~~l~~~-~-~~~-~vliiGa-Gg~a~ai~~~L~~~G~-~~I~v~nR~~~ka--~~la~~~---~~--~~-~~~~~~~~  164 (253)
T 3u62_A           98 VVKSLEGV-E-VKE-PVVVVGA-GGAARAVIYALLQMGV-KDIWVVNRTIERA--KALDFPV---KI--FS-LDQLDEVV  164 (253)
T ss_dssp             HHHHTTTC-C-CCS-SEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESCHHHH--HTCCSSC---EE--EE-GGGHHHHH
T ss_pred             HHHHHHhc-C-CCC-eEEEECc-HHHHHHHHHHHHHcCC-CEEEEEeCCHHHH--HHHHHHc---cc--CC-HHHHHhhh
Confidence            56666543 2 244 8999998 9999999999998885 6899999975432  2233221   11  11 24566788


Q ss_pred             CCCCEEEEcCCC
Q 025075           87 TGMDLVIIPAGV   98 (258)
Q Consensus        87 ~~aDiVIi~ag~   98 (258)
                      +++|+||.+...
T Consensus       165 ~~aDiVInatp~  176 (253)
T 3u62_A          165 KKAKSLFNTTSV  176 (253)
T ss_dssp             HTCSEEEECSST
T ss_pred             cCCCEEEECCCC
Confidence            999999998643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.85  E-value=0.004  Score=56.77  Aligned_cols=97  Identities=19%  Similarity=0.228  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..++|+|||. |.+|+.++..|...|.  +|..||++... ....++.       +..   ..++++.++.||+|+++..
T Consensus       190 ~gktvGIIGl-G~IG~~vA~~l~a~G~--~V~~~d~~~~~~~~~~~~G-------~~~---~~~l~ell~~aDvV~l~~P  256 (393)
T 2nac_A          190 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LTW---HATREDMYPVCDVVTLNCP  256 (393)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CEE---CSSHHHHGGGCSEEEECSC
T ss_pred             CCCEEEEEeE-CHHHHHHHHHHHhCCC--EEEEEcCCccchhhHhhcC-------cee---cCCHHHHHhcCCEEEEecC
Confidence            4469999998 9999999999988776  89999987532 2221111       111   1356788999999999863


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ..  + +++ .++  |    .   +.+....|++++|+++-  ++|
T Consensus       257 lt--~-~t~-~li--~----~---~~l~~mk~gailIN~aRG~~vd  289 (393)
T 2nac_A          257 LH--P-ETE-HMI--N----D---ETLKLFKRGAYIVNTARGKLCD  289 (393)
T ss_dssp             CC--T-TTT-TCB--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             Cc--h-HHH-HHh--h----H---HHHhhCCCCCEEEECCCchHhh
Confidence            21  1 111 111  1    1   22334457889998863  455

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=96.85  E-value=0.0031  Score=53.88  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=52.4

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      |.+...+...+.+. ||+|||+ |.+|.+++..|...|.  +|.++|++.++...  +.+.. ...   +   .++++. 
T Consensus       104 ~~~~l~~~~~~l~~-~v~iiG~-G~~g~~~a~~l~~~g~--~v~v~~r~~~~~~~--l~~~~-~~~---~---~~~~~~-  169 (263)
T 2d5c_A          104 FLEALKAGGIPLKG-PALVLGA-GGAGRAVAFALREAGL--EVWVWNRTPQRALA--LAEEF-GLR---A---VPLEKA-  169 (263)
T ss_dssp             HHHHHHHTTCCCCS-CEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHHHH--HHHHH-TCE---E---CCGGGG-
T ss_pred             HHHHHHHhCCCCCC-eEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHH--HHHHh-ccc---h---hhHhhc-
Confidence            44444443223445 8999998 9999999999998886  89999987643222  22110 111   1   245566 


Q ss_pred             CCCCEEEEcCCCC
Q 025075           87 TGMDLVIIPAGVP   99 (258)
Q Consensus        87 ~~aDiVIi~ag~~   99 (258)
                      +++|+||++...+
T Consensus       170 ~~~Divi~~tp~~  182 (263)
T 2d5c_A          170 REARLLVNATRVG  182 (263)
T ss_dssp             GGCSEEEECSSTT
T ss_pred             cCCCEEEEccCCC
Confidence            9999999997544

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.84  E-value=0.013  Score=50.61  Aligned_cols=158  Identities=15%  Similarity=0.128  Sum_probs=83.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe----CCCchHhhhC------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL----GQPQLENALT------   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~----~~~d~~~a~~------   87 (258)
                      +++.|+||+|.+|.+++..|+..|. ...|++.|++.+..  ...++........+..+.    ...++++.++      
T Consensus        34 k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  113 (287)
T 3rku_A           34 KTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQEF  113 (287)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCGGG
T ss_pred             CEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            4799999999999999999887663 12799999876421  122222211111222211    1122333333      


Q ss_pred             -CCCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           88 -GMDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                       ..|++|.+||.....+    .+.   .+.+..|+.    +.+.+.+.+.+.. .+.||+++.....           . 
T Consensus       114 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~-~g~IV~isS~~~~-----------~-  180 (287)
T 3rku_A          114 KDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKN-SGDIVNLGSIAGR-----------D-  180 (287)
T ss_dssp             CSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------S-
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEECChhhc-----------C-
Confidence             6899999999653221    122   234455554    4455555555443 4667766643221           1 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEE
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV  193 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~  193 (258)
                      +.|..-.++.+...-..+-+.++.++.  +..|++.++
T Consensus       181 ~~~~~~~Y~asKaa~~~l~~~la~e~~--~~gIrvn~v  216 (287)
T 3rku_A          181 AYPTGSIYCASKFAVGAFTDSLRKELI--NTKIRVILI  216 (287)
T ss_dssp             CCTTCHHHHHHHHHHHHHHHHHHHHTT--TSSCEEEEE
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHhh--hcCCEEEEE
Confidence            122222233332223456677777774  445554433

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.84  E-value=0.0039  Score=53.21  Aligned_cols=151  Identities=17%  Similarity=0.170  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc---h-------HhhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~~a   89 (258)
                      ++|.|+||++.+|..++..|++.|.  .|++.|++++..  .++.....  ....+. .-+|   .       .+.+...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~--~~~~~~~~--~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD--KVCFIDIDEKRS--ADFAKERP--NLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--HHHHTTCT--TEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHH--HHHHHhcC--CEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4688999999999999999999997  899999986422  12222211  111111 1111   1       2334689


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      |++|..||......   .+.   ...+..|+.    ..+...+.+.+.  ++.+|+++.-...           . +.|.
T Consensus        77 DiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~--~G~IInisS~~~~-----------~-~~~~  142 (247)
T 3ged_A           77 DVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKN--KGRIINIASTRAF-----------Q-SEPD  142 (247)
T ss_dssp             CEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--TCEEEEECCGGGT-----------S-CCTT
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhc--CCcEEEEeecccc-----------c-CCCC
Confidence            99999998754321   122   223445544    445556666543  4677777642220           0 1221


Q ss_pred             CcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .-.++.+.-.-..|-+.+|.+++  | +|++-.+.
T Consensus       143 ~~~Y~asKaal~~ltk~lA~ela--~-~IrVN~I~  174 (247)
T 3ged_A          143 SEAYASAKGGIVALTHALAMSLG--P-DVLVNCIA  174 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHT--T-TSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHC--C-CCEEEEEe
Confidence            11122221122346677888886  4 56654444

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.84  E-value=0.0032  Score=53.63  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=29.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNT   57 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~   57 (258)
                      |+||||+|+|+ |.+|+.++..+...+.  +|+ .+|++..
T Consensus         1 M~MmkI~ViGa-GrMG~~i~~~l~~~~~--eLva~~d~~~~   38 (243)
T 3qy9_A            1 MASMKILLIGY-GAMNQRVARLAEEKGH--EIVGVIENTPK   38 (243)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC
T ss_pred             CCceEEEEECc-CHHHHHHHHHHHhCCC--EEEEEEecCcc
Confidence            35789999998 9999999999888776  555 4787653

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.0026  Score=53.47  Aligned_cols=57  Identities=25%  Similarity=0.349  Sum_probs=42.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEE-EEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVL-HLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei-~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVIi~ag   97 (258)
                      |||+|||+ |.+|..++..|...++  +| .++|+++. ..     .        .   ..|+++.+ .++|+|+++..
T Consensus         1 m~vgiIG~-G~mG~~~~~~l~~~g~--~lv~v~d~~~~-~~-----~--------~---~~~~~~l~~~~~DvVv~~~~   59 (236)
T 2dc1_A            1 MLVGLIGY-GAIGKFLAEWLERNGF--EIAAILDVRGE-HE-----K--------M---VRGIDEFLQREMDVAVEAAS   59 (236)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEECSSCC-CT-----T--------E---ESSHHHHTTSCCSEEEECSC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCC--EEEEEEecCcc-hh-----h--------h---cCCHHHHhcCCCCEEEECCC
Confidence            58999998 9999999988877676  76 69998742 11     0        1   14566777 69999999863

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.81  E-value=0.0043  Score=55.18  Aligned_cols=94  Identities=20%  Similarity=0.248  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..+...|.  +|..||++.... ..++    .  .     ...++++.+++||+|+++....
T Consensus       146 g~~vgIiG~-G~IG~~~A~~l~~~G~--~V~~~d~~~~~~-~~~~----~--~-----~~~~l~ell~~aDvV~l~~p~~  210 (333)
T 1j4a_A          146 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPE-LEKK----G--Y-----YVDSLDDLYKQADVISLHVPDV  210 (333)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHT----T--C-----BCSCHHHHHHHCSEEEECSCCC
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEECCCcchh-HHhh----C--e-----ecCCHHHHHhhCCEEEEcCCCc
Confidence            368999998 9999999999988887  899999876532 1111    1  1     0125678899999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + +++. ++  |    .+.   +....|++++|+++  .++|
T Consensus       211 --~-~t~~-li--~----~~~---l~~mk~ga~lIn~arg~~vd  241 (333)
T 1j4a_A          211 --P-ANVH-MI--N----DES---IAKMKQDVVIVNVSRGPLVD  241 (333)
T ss_dssp             --G-GGTT-CB--S----HHH---HHHSCTTEEEEECSCGGGBC
T ss_pred             --H-HHHH-HH--h----HHH---HhhCCCCcEEEECCCCcccC
Confidence              1 1111 11  1    122   22335788998886  3555

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.81  E-value=0.0037  Score=55.77  Aligned_cols=71  Identities=24%  Similarity=0.360  Sum_probs=42.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +|+||+|+||+|.+|..+...|..+  +.+ ||+.+......+..+.+..    ..+....  .|. +.++++|+||++.
T Consensus         2 ~~~kV~I~GAtG~iG~~llr~L~~~~~p~~-elv~i~s~~~~G~~~~~~~----~~i~~~~--~~~-~~~~~vDvVf~a~   73 (336)
T 2r00_A            2 QQFNVAIFGATGAVGETMLEVLQEREFPVD-ELFLLASERSEGKTYRFNG----KTVRVQN--VEE-FDWSQVHIALFSA   73 (336)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTCCEE-EEEEEECTTTTTCEEEETT----EEEEEEE--GGG-CCGGGCSEEEECS
T ss_pred             CccEEEEECCCCHHHHHHHHHHhcCCCCCE-EEEEEECCCCCCCceeecC----ceeEEec--CCh-HHhcCCCEEEECC
Confidence            4689999999999999999988876  323 6666643222222111111    1222211  122 3567999999987


Q ss_pred             C
Q 025075           97 G   97 (258)
Q Consensus        97 g   97 (258)
                      |
T Consensus        74 g   74 (336)
T 2r00_A           74 G   74 (336)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.80  E-value=0.0031  Score=52.86  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=58.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC----------CchHhhhCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----------PQLENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~----------~d~~~a~~~aD   90 (258)
                      +++.|+||+|.+|.+++..|+. +.  .|++.|++.....  ++.+..   .+..+...          .+..+.+...|
T Consensus         6 k~vlITGas~gIG~~~a~~l~~-g~--~v~~~~r~~~~~~--~~~~~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~id   77 (245)
T 3e9n_A            6 KIAVVTGATGGMGIEIVKDLSR-DH--IVYALGRNPEHLA--ALAEIE---GVEPIESDIVKEVLEEGGVDKLKNLDHVD   77 (245)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTT-TS--EEEEEESCHHHHH--HHHTST---TEEEEECCHHHHHHTSSSCGGGTTCSCCS
T ss_pred             CEEEEEcCCCHHHHHHHHHHhC-CC--eEEEEeCCHHHHH--HHHhhc---CCcceecccchHHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999987 54  7999998754221  122211   11111100          01112234789


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHHhHHH----HHHHHHHhhhhCCCcEEEEecCCC
Q 025075           91 LVIIPAGVPRKPG---MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~r---~d~~~~n~~i----~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ++|.+||......   .+.   ...+..|+.-    .+.+.+.+++..  +.+|++|...
T Consensus        78 ~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~--g~iv~isS~~  135 (245)
T 3e9n_A           78 TLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS--GCVIYINSGA  135 (245)
T ss_dssp             EEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT--CEEEEEC---
T ss_pred             EEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC--CeEEEEcCcc
Confidence            9999998753221   111   2234455443    555666665543  6676666433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.80  E-value=0.0046  Score=57.75  Aligned_cols=90  Identities=21%  Similarity=0.166  Sum_probs=60.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...++|+|||. |.||..++..|...|.  +|..+|++.... .+.  .+ .    ...    .++++.+++||+|+++.
T Consensus       255 l~GktVgIIG~-G~IG~~vA~~l~~~G~--~Viv~d~~~~~~~~a~--~~-g----~~~----~~l~ell~~aDiVi~~~  320 (479)
T 1v8b_A          255 ISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQAV--ME-G----FNV----VTLDEIVDKGDFFITCT  320 (479)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHHHH--TT-T----CEE----CCHHHHTTTCSEEEECC
T ss_pred             cCCCEEEEEee-CHHHHHHHHHHHhCcC--EEEEEeCChhhHHHHH--Hc-C----CEe----cCHHHHHhcCCEEEECC
Confidence            34569999998 9999999999987776  899999876422 111  11 1    111    25788999999999985


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +.   .+.     +  |    .   +.+....|++++++++-
T Consensus       321 ~t---~~l-----I--~----~---~~l~~MK~gailiNvgr  345 (479)
T 1v8b_A          321 GN---VDV-----I--K----L---EHLLKMKNNAVVGNIGH  345 (479)
T ss_dssp             SS---SSS-----B--C----H---HHHTTCCTTCEEEECSS
T ss_pred             Ch---hhh-----c--C----H---HHHhhcCCCcEEEEeCC
Confidence            21   111     0  1    1   22334457899999863

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=96.79  E-value=0.0037  Score=56.00  Aligned_cols=93  Identities=18%  Similarity=0.354  Sum_probs=62.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|...|.  +|..||+....    .....     .. .   .++++.+++||+|+++....
T Consensus       148 gktvgIiGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~----~~~~~-----~~-~---~~l~ell~~aDvV~l~~Plt  211 (343)
T 2yq5_A          148 NLTVGLIGV-GHIGSAVAEIFSAMGA--KVIAYDVAYNP----EFEPF-----LT-Y---TDFDTVLKEADIVSLHTPLF  211 (343)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCG----GGTTT-----CE-E---CCHHHHHHHCSEEEECCCCC
T ss_pred             CCeEEEEec-CHHHHHHHHHHhhCCC--EEEEECCChhh----hhhcc-----cc-c---cCHHHHHhcCCEEEEcCCCC
Confidence            368999998 9999999999988887  99999997643    11111     11 1   26788999999999986321


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec--CCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPvd  141 (258)
                        + +++. ++  |    .+.   +....|++++|+++  .++|
T Consensus       212 --~-~t~~-li--~----~~~---l~~mk~gailIN~aRg~~vd  242 (343)
T 2yq5_A          212 --P-STEN-MI--G----EKQ---LKEMKKSAYLINCARGELVD  242 (343)
T ss_dssp             --T-TTTT-CB--C----HHH---HHHSCTTCEEEECSCGGGBC
T ss_pred             --H-HHHH-Hh--h----HHH---HhhCCCCcEEEECCCChhhh
Confidence              1 1221 11  1    122   33445889999986  4566

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.78  E-value=0.01  Score=50.15  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=31.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+++.|+||+|.+|.+++..|+..|.  +|++.|++.+
T Consensus         5 ~k~vlVTGas~gIG~~ia~~l~~~G~--~V~~~~r~~~   40 (260)
T 2qq5_A            5 GQVCVVTGASRGIGRGIALQLCKAGA--TVYITGRHLD   40 (260)
T ss_dssp             TCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHH
Confidence            35789999999999999999999997  8999998764

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.77  E-value=0.002  Score=53.87  Aligned_cols=96  Identities=18%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-hCCCCEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-LTGMDLVII   94 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-~~~aDiVIi   94 (258)
                      .++|.|+|+ |.+|+.++..|...|.   ++++|.+++....  +. ..    +..+.+ .+|   ++++ +++||.||+
T Consensus         9 ~~~viI~G~-G~~G~~la~~L~~~g~---v~vid~~~~~~~~--~~-~~----~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (234)
T 2aef_A            9 SRHVVICGW-SESTLECLRELRGSEV---FVLAEDENVRKKV--LR-SG----ANFVHGDPTRVSDLEKANVRGARAVIV   77 (234)
T ss_dssp             -CEEEEESC-CHHHHHHHHHSTTSEE---EEEESCGGGHHHH--HH-TT----CEEEESCTTCHHHHHHTTCTTCSEEEE
T ss_pred             CCEEEEECC-ChHHHHHHHHHHhCCe---EEEEECCHHHHHH--Hh-cC----CeEEEcCCCCHHHHHhcCcchhcEEEE
Confidence            358999998 9999999999987763   8899987653222  22 11    111222 122   3333 789999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCc-EEEEecCCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVN  141 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a-~viv~tNPvd  141 (258)
                      +.+.         |  ..|..    ++..+++.+|+. ++.-+.||-.
T Consensus        78 ~~~~---------d--~~n~~----~~~~a~~~~~~~~iia~~~~~~~  110 (234)
T 2aef_A           78 DLES---------D--SETIH----CILGIRKIDESVRIIAEAERYEN  110 (234)
T ss_dssp             CCSC---------H--HHHHH----HHHHHHHHCSSSEEEEECSSGGG
T ss_pred             cCCC---------c--HHHHH----HHHHHHHHCCCCeEEEEECCHhH
Confidence            8631         1  23333    344455667874 4445667765

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.77  E-value=0.0014  Score=59.12  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=45.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh-----cCCC-----CCeEEEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-----HMDT-----GAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~-----~~~~-----~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++||+|+||+|.+|..+...|...+.+ ||..+......|+...-.     |...     ...+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpl_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            469999999999999999988776654 777775544333322111     1000     112221    122 457899


Q ss_pred             CEEEEcCC
Q 025075           90 DLVIIPAG   97 (258)
Q Consensus        90 DiVIi~ag   97 (258)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpl_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.77  E-value=0.0014  Score=59.12  Aligned_cols=72  Identities=17%  Similarity=0.236  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh-----cCCC-----CCeEEEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-----HMDT-----GAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~-----~~~~-----~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++||+|+||+|.+|..+...|...+.+ ||..+......|+...-.     |...     ...+..    .+. +.+.++
T Consensus         7 ~~kVaIvGATGyvG~eLlrlL~~hP~~-el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~----~~~-~~~~~v   80 (359)
T 4dpk_A            7 TLKAAILGATGLVGIEYVRMLSNHPYI-KPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKP----TDP-KLMDDV   80 (359)
T ss_dssp             CEEEEETTTTSTTHHHHHHHHTTCSSE-EEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEE----CCG-GGCTTC
T ss_pred             CCeEEEECCCCHHHHHHHHHHHhCCCc-eEEEEECchhcCCChhHhcccccccccccccccceEEe----CCH-HHhcCC
Confidence            469999999999999999988776654 777775544333322111     1000     112221    122 457899


Q ss_pred             CEEEEcCC
Q 025075           90 DLVIIPAG   97 (258)
Q Consensus        90 DiVIi~ag   97 (258)
                      |+||++.+
T Consensus        81 Dvvf~a~p   88 (359)
T 4dpk_A           81 DIIFSPLP   88 (359)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99999865

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.76  E-value=0.0056  Score=57.38  Aligned_cols=91  Identities=18%  Similarity=0.141  Sum_probs=60.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ...++|+|||. |.||..++..|...|.  +|..+|++....  .+.....    ...    .++++.+++||+|+++.+
T Consensus       275 L~GktVgIIG~-G~IG~~vA~~l~~~G~--~V~v~d~~~~~~--~~a~~~G----~~~----~~l~ell~~aDiVi~~~~  341 (494)
T 3d64_A          275 IAGKIAVVAGY-GDVGKGCAQSLRGLGA--TVWVTEIDPICA--LQAAMEG----YRV----VTMEYAADKADIFVTATG  341 (494)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSCHHHH--HHHHTTT----CEE----CCHHHHTTTCSEEEECSS
T ss_pred             cCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCChHhH--HHHHHcC----CEe----CCHHHHHhcCCEEEECCC
Confidence            34569999998 9999999999988786  899999876421  1111111    111    257889999999999862


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      .   .+.     +  |    .+..   ....|++++++++-
T Consensus       342 t---~~l-----I--~----~~~l---~~MK~gAilINvgr  365 (494)
T 3d64_A          342 N---YHV-----I--N----HDHM---KAMRHNAIVCNIGH  365 (494)
T ss_dssp             S---SCS-----B--C----HHHH---HHCCTTEEEEECSS
T ss_pred             c---ccc-----c--C----HHHH---hhCCCCcEEEEcCC
Confidence            1   111     0  1    2233   33347889998864

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.76  E-value=0.0039  Score=56.21  Aligned_cols=99  Identities=22%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~e-i~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...++|+|||. |.+|+.++..|...|.  + |..||++.......  ...    .+..   ..++++.+++||+|+++.
T Consensus       162 l~g~tvgIIG~-G~IG~~vA~~l~~~G~--~~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~aDvV~l~~  229 (364)
T 2j6i_A          162 IEGKTIATIGA-GRIGYRVLERLVPFNP--KELLYYDYQALPKDAE--EKV----GARR---VENIEELVAQADIVTVNA  229 (364)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHGGGCC--SEEEEECSSCCCHHHH--HHT----TEEE---CSSHHHHHHTCSEEEECC
T ss_pred             CCCCEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECCCccchhHH--Hhc----CcEe---cCCHHHHHhcCCEEEECC
Confidence            34469999998 9999999999987775  5 99999876322211  111    1111   235778899999999986


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ...  + +++. ++  |    .   +.+....|++++|+++.  ++|
T Consensus       230 P~t--~-~t~~-li--~----~---~~l~~mk~ga~lIn~arG~~vd  263 (364)
T 2j6i_A          230 PLH--A-GTKG-LI--N----K---ELLSKFKKGAWLVNTARGAICV  263 (364)
T ss_dssp             CCS--T-TTTT-CB--C----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             CCC--h-HHHH-Hh--C----H---HHHhhCCCCCEEEECCCCchhC
Confidence            321  1 1111 11  1    1   22334457899999864  455

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	258
d1mlda1	144	c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus s	2e-42
d2cmda1	145	c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichi	2e-34
d7mdha1	175	c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (	5e-31
d1y6ja1	142	c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridi	6e-29
d1ojua1	142	c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon	1e-28
d1y7ta1	154	c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus th	1e-28
d1a5za1	140	c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermoto	2e-28
d1o6za1	142	c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon	2e-28
d1llda1	143	c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobac	3e-28
d1uxja1	142	c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflex	6e-28
d5mdha1	154	c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus s	8e-28
d1guza1	142	c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium	2e-27
d1t2da1	150	c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria p	4e-26
d1ez4a1	146	c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobac	2e-24
d1ldna1	148	c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus	1e-23
d1pzga1	154	c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplas	1e-23
d1mlda2	169	d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (S	1e-23
d2ldxa1	159	c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mu	2e-23
d1i0za1	160	c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Ho	6e-23
d2cmda2	167	d.162.1.1 (A:146-312) Malate dehydrogenase {Escher	1e-21
d1hyea1	145	c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydroge	1e-21
d1hyha1	146	c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydro	1e-21
d1up7a1	162	c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Ther	6e-18
d1guza2	163	d.162.1.1 (A:143-305) Malate dehydrogenase {Chloro	3e-16
d1u8xx1	167	c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase	5e-16
d1s6ya1	169	c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Baci	5e-16
d1uxja2	164	d.162.1.1 (A:144-307) Malate dehydrogenase {Chloro	1e-13
d1obba1	171	c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermoto	2e-13
d5mdha2	179	d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (S	4e-13
d1hyha2	163	d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehy	3e-12
d1ldma2	169	d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfi	7e-12
d1ldna2	168	d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacil	8e-12
d1y6ja2	169	d.162.1.1 (A:149-317) Lactate dehydrogenase {Clost	1e-11
d1llda2	170	d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifid	1e-11
d1llca2	172	d.162.1.1 (A:165-334) Lactate dehydrogenase {Lacto	2e-11
d1hyea2	168	d.162.1.1 (A:146-313) MJ0490, lactate/malate dehyd	6e-11
d1a5za2	172	d.162.1.1 (A:164-333) Lactate dehydrogenase {Therm	7e-11
d1i0za2	172	d.162.1.1 (A:161-332) Lactate dehydrogenase {Human	9e-11
d1o6za2	161	d.162.1.1 (A:163-330) Malate dehydrogenase {Archae	1e-10
d1ez4a2	171	d.162.1.1 (A:163-334) Lactate dehydrogenase {Lacto	2e-10
d2ldxa2	172	d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse	3e-10
d1pzga2	174	d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxop	8e-10
d1t2da2	165	d.162.1.1 (A:151-315) Lactate dehydrogenase {Malar	1e-09
d7mdha2	188	d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghu	7e-09
d1y7ta2	173	d.162.1.1 (A:154-332) Malate dehydrogenase {Thermu	1e-08
d1b8pa2	171	d.162.1.1 (A:159-329) Malate dehydrogenase {Aquasp	2e-08

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 144

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  140 bits (353), Expect = 2e-42
 Identities = 92/143 (64%), Positives = 115/143 (80%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVA+LGA+GGIGQPL++L+K +PLVS L LYD+ +TPGV AD+SH++T A V+G+LG  Q
Sbjct: 2   KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
           L + L G D+V+IPAGVPRKPGMTRDDLFN NA IV TL    A+ CP+A + +ISNPVN
Sbjct: 62  LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVN 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
           ST+PI AEVFKK G Y+P K+ G
Sbjct: 122 STIPITAEVFKKHGVYNPNKIFG 144

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (299), Expect = 2e-34
 Identities = 84/145 (57%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 22  KVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQ 79
           KVA+LGAAGGIGQ LA+L+K   P  S L LYD+   TPGV  D+SH+ T   ++GF G+
Sbjct: 2   KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGE 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                AL G D+V+I AGV RKPGM R DLFN+NAGIV+ L + +AK CP A + +I+NP
Sbjct: 62  -DATPALEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           VN+TV IAAEV KKAG YD  KL G
Sbjct: 121 VNTTVAIAAEVLKKAGVYDKNKLFG 145

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score =  111 bits (278), Expect = 5e-31
 Identities = 27/137 (19%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNTPGVTADISHMDTGA---VV 73
            +A+ GAAG I   L   +    +        L L     +      ++     +   ++
Sbjct: 26  NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLL 85

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 132
           R              +D  ++    PR PGM R  L +IN  I     + +      N  
Sbjct: 86  REVSIGIDPYEVFEDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVK 145

Query: 133 VNLISNPVNSTVPIAAE 149
           V ++ NP N+   I  +
Sbjct: 146 VLVVGNPCNTNALICLK 162

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score =  104 bits (261), Expect = 6e-29
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KVAI+GA G +G   A  M +    + L L DV     +   +        +        
Sbjct: 3   KVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAG 61

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             + +   D++++ AG  RKPG TR DL   N  I + + + I K   +  + ++SNPV+
Sbjct: 62  DYSDVKDCDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD 121

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               +     +K       K++G
Sbjct: 122 IITYMI----QKWSGLPVGKVIG 140

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score =  103 bits (259), Expect = 1e-28
 Identities = 38/146 (26%), Positives = 70/146 (47%), Gaps = 7/146 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+  +GA G +G   A    +N  V  + L D+      G   D++H   G      +  
Sbjct: 2   KLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
               + L G +++++ AG+ RKPGMTR DL + NAGI++ + + I +  P + + +++NP
Sbjct: 61  GADYSLLKGSEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGV 165
           ++    I      K       ++ G+
Sbjct: 121 MDVMTYIM----WKESGKPRNEVFGM 142

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score =  104 bits (260), Expect = 1e-28
 Identities = 33/149 (22%), Positives = 56/149 (37%), Gaps = 12/149 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVS--------VLHLYDVVNTPGVTADISHMDTGAVV 73
           +VA+ GAAG IG  L   +    ++         +L +   +                ++
Sbjct: 6   RVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL 65

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNAT 132
            G       + A    D  ++    PRK GM R DL  +N  I       +A+    +  
Sbjct: 66  AGLEATDDPKVAFKDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVK 125

Query: 133 VNLISNPVNSTVPIAAEVFKKAGTYDPKK 161
           V ++ NP N+   IA   +K A   +P+ 
Sbjct: 126 VLVVGNPANTNALIA---YKNAPGLNPRN 151

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 140

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (257), Expect = 2e-28
 Identities = 39/143 (27%), Positives = 65/143 (45%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ I+G  G +G   A  + +      + L DV         +  +      R       
Sbjct: 2   KIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAG 60

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
               L G D+VI+ AGVP+KPG TR  L   NA +++ +   ++K  P++ V +++NPV+
Sbjct: 61  DYADLKGSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               +    F K    DP+K+ G
Sbjct: 121 ----VLTYFFLKESGMDPRKVFG 139

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  103 bits (257), Expect = 2e-28
 Identities = 38/147 (25%), Positives = 66/147 (44%), Gaps = 10/147 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFL 77
           KV+++GAAG +G      + +  +   +   D+ +    T G  AD +H    A      
Sbjct: 2   KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNH--GIAYDSNTR 59

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
            +        G D+V+I AG+PR+PG TR DL   NA I+  +   + +   +      S
Sbjct: 60  VRQGGYEDTAGSDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           NPV+    +      +AG    ++++G
Sbjct: 120 NPVD----LLNRHLYEAGDRSREQVIG 142

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 143

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score =  102 bits (256), Expect = 3e-28
 Identities = 39/145 (26%), Positives = 62/145 (42%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+A++GA G +G  LA       +   + L D+          D+ H  +        G 
Sbjct: 3   KLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS 61

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
              E      D+V+I AG  +KPG +R +L      I++ +   + K  PNA   LI+NP
Sbjct: 62  DDPE-ICRDADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    IA  V +K       ++ G
Sbjct: 121 VD----IATHVAQKLTGLPENQIFG 141

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score =  102 bits (254), Expect = 6e-28
 Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 6/144 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQP 80
           K++I+GA G +G   A  +    L  ++ L  V   P G   D+            +   
Sbjct: 3   KISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT 61

Query: 81  QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 140
                    D++++ +G PRKPGM+R+DL  +NA I R      A   PNA + +++NP+
Sbjct: 62  NNYADTANSDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 121

Query: 141 NSTVPIAAEVFKKAGTYDPKKLLG 164
           ++   +AAEV      +  ++++G
Sbjct: 122 DAMTYLAAEVSG----FPKERVIG 141

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  102 bits (254), Expect = 8e-28
 Identities = 30/141 (21%), Positives = 53/141 (37%), Gaps = 9/141 (6%)

Query: 22  KVAILGAAGGIGQPLAML-----MKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV--- 73
           +V + GAAG I   L        +       +L L D+    GV   +        +   
Sbjct: 5   RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL 64

Query: 74  RGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV 133
           +  +   + E A   +D+ I+   +PR+ GM R DL   N  I +     + K    +  
Sbjct: 65  KDVIATDKEEIAFKDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVK 124

Query: 134 NL-ISNPVNSTVPIAAEVFKK 153
            + + NP N+    A++    
Sbjct: 125 VIVVGNPANTNCLTASKSAPS 145

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 142

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score =  101 bits (252), Expect = 2e-27
 Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 7/146 (4%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++GA G +G   A  +    L   L L DVV     G   D+       +    +  
Sbjct: 2   KITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTG 60

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                     D+VII AG+PRKPGMTR+DL   NAGIV+ + + I K   N  + ++SNP
Sbjct: 61  SNDYADTANSDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP 120

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLGV 165
           ++    +A            ++++G+
Sbjct: 121 LDIMTHVA----WVRSGLPKERVIGM 142

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 150

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 97.5 bits (242), Expect = 4e-26
 Identities = 45/154 (29%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 18  AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 76
           A   K+ ++G+ G IG  +A L+    L  V+    V N P G   D SH +  A     
Sbjct: 1   APKAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCK 59

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNA 131
           +      + L G D+VI+ AG  + PG +     RDDL  +N  I+  +   I K CPNA
Sbjct: 60  VSGSNTYDDLAGADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNA 119

Query: 132 TVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 165
            + +++NPV+  V +      +       K++G+
Sbjct: 120 FIIVVTNPVDVMVQLL----HQHSGVPKNKIIGL 149

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 93.2 bits (231), Expect = 2e-24
 Identities = 34/143 (23%), Positives = 58/143 (40%), Gaps = 5/143 (3%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           KV ++G  G +G   A  M    +     + DVV        +   D  A          
Sbjct: 7   KVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSG 65

Query: 82  LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 141
             +     DLV+I AG P+KPG +R DL N N  I+ ++ + +     +    + +NPV+
Sbjct: 66  EYSDCKDADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD 125

Query: 142 STVPIAAEVFKKAGTYDPKKLLG 164
               I      K   +  ++++G
Sbjct: 126 ----ILTYATWKFSGFPKERVIG 144

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 148

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 91.3 bits (226), Expect = 1e-23
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 8/147 (5%)

Query: 20  GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFL 77
           G +V ++GA G +G      +    +   + L D   +  +    D +H    A     +
Sbjct: 6   GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDI 64

Query: 78  GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 137
                +      DLV+I AG  +KPG TR DL + N  I R++ E +          + +
Sbjct: 65  WHGDYD-DCRDADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123

Query: 138 NPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           NPV+    I      K      ++++G
Sbjct: 124 NPVD----ILTYATWKFSGLPHERVIG 146

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 154

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 91.3 bits (226), Expect = 1e-23
 Identities = 43/150 (28%), Positives = 70/150 (46%), Gaps = 12/150 (8%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQP 80
           KVA++G+ G IG  +  L  +  L  V+    V   P   A D+SH+ +       +   
Sbjct: 9   KVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE 67

Query: 81  -QLENALTGMDLVIIPAGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVN 134
              E ALTG D VI+ AG+ + PG      +R+DL   N+ I+R + + I K CP   + 
Sbjct: 68  YSYEAALTGADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFII 127

Query: 135 LISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           +++NP++  V +  E            + G
Sbjct: 128 VVTNPLDCMVKVMCEASG----VPTNMICG 153

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 91.3 bits (226), Expect = 1e-23
 Identities = 56/91 (61%), Positives = 64/91 (70%)

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 224
           VT LD+VRAN FVAE+ GLDP  V VPV+GGHAG TI+PL+SQ  P   F Q++   LT 
Sbjct: 1   VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTG 60

Query: 225 RIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255
           RIQ  GTEVV+AKAGAGSATLSM        
Sbjct: 61  RIQEAGTEVVKAKAGAGSATLSMAYAGARFV 91

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 159

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.2 bits (226), Expect = 2e-23
 Identities = 33/145 (22%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ + +  L   L L D       G   D+ H     +    +  
Sbjct: 21  KITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSL-FLSTPKIVF 78

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
            +  N      LVII AG     G TR DL   N  I++ +  G+ +  P+  + +++NP
Sbjct: 79  GKDYNVSANSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNP 138

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    +      K   +   +++G
Sbjct: 139 VDILTYVVW----KISGFPVGRVIG 159

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 89.7 bits (222), Expect = 6e-23
 Identities = 30/145 (20%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQ 79
           K+ ++G  G +G   A+ +    L   L L DV+     G   D+ H          +  
Sbjct: 22  KITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVAD 80

Query: 80  PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 139
                      +V++ AGV ++ G +R +L   N  + + +   I K  P+  + ++SNP
Sbjct: 81  KDYS-VTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP 139

Query: 140 VNSTVPIAAEVFKKAGTYDPKKLLG 164
           V+    +      K       +++G
Sbjct: 140 VDILTYVT----WKLSGLPKHRVIG 160

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 86.7 bits (214), Expect = 1e-21
 Identities = 57/91 (62%), Positives = 67/91 (73%), Gaps = 1/91 (1%)

Query: 165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTN 224
           VT LD++R+NTFVAE+ G  P +V+VPV+GGH+GVTILPLLSQV     FT++E   LT 
Sbjct: 1   VTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVS-FTEQEVADLTK 59

Query: 225 RIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255
           RIQN GTEVVEAKAG GSATLSM        
Sbjct: 60  RIQNAGTEVVEAKAGGGSATLSMGQAAARFG 90

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 145

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 86.0 bits (212), Expect = 1e-21
 Identities = 43/149 (28%), Positives = 68/149 (45%), Gaps = 11/149 (7%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYD----VVNTPGVTADISHMDTGAVV--RG 75
           KV I+GA+G +G   A+L+   P +  L L      +    G+  DI     G       
Sbjct: 2   KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANI 61

Query: 76  FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 135
           ++   +    +   D+VII +GVPRK GM+R DL   NA IV    + IA+ C    + +
Sbjct: 62  YVESDENLRIIDESDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTK-IFV 120

Query: 136 ISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           I+NPV+     A         ++  ++ G
Sbjct: 121 ITNPVDVMTYKAL----VDSKFERNQVFG 145

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 146

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 85.9 bits (212), Expect = 1e-21
 Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 10/148 (6%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ 81
           K+ I+G  G +G  +A  +    +       D          I   D  A +        
Sbjct: 3   KIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVI 61

Query: 82  LEN-ALTGMDLVIIPAGVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 136
            +  AL   D+VI   G  +     P   R       + +V+++   + +   +  + +I
Sbjct: 62  NDWAALADADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVI 121

Query: 137 SNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
           SNPV+    +   +F+    +   K++G
Sbjct: 122 SNPVD----VITALFQHVTGFPAHKVIG 145

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

 Score = 76.6 bits (188), Expect = 6e-18
 Identities = 23/167 (13%), Positives = 49/167 (29%), Gaps = 32/167 (19%)

Query: 22  KVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGF 76
           ++A++G  G    P  +   +    +  +  +  YD+      +  D          +  
Sbjct: 2   RIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVL 60

Query: 77  LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA----------- 125
           +     E A+     VI         G   D+   +  G++     G+            
Sbjct: 61  ISD-TFEGAVVDAKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPI 119

Query: 126 --------KCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 164
                   +   NAT+   +NP         E  +     + +K +G
Sbjct: 120 VEEYVDTVRKTSNATIVNFTNPSG----HITEFVRNY--LEYEKFIG 160

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

 Score = 72.0 bits (176), Expect = 3e-16
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS----FTQEETEYL 222
           +LD  R  +F+A  LG+  +D++  V+GGH    +  +                E  + L
Sbjct: 3   VLDAARFRSFIAMELGVSMQDINACVLGGHGDAMVPVVKYTTVAGIPISDLLPAETIDKL 62

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255
             R +NGG E+VE     GSA  +   ++    
Sbjct: 63  VERTRNGGAEIVEH-LKQGSAFYAPASSVVEMV 94

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

 Score = 71.2 bits (174), Expect = 5e-16
 Identities = 28/162 (17%), Positives = 46/162 (28%), Gaps = 30/162 (18%)

Query: 21  FKVAILGAAGGIGQP---LAMLMKINPL-VSVLHLYDV----VNTPGVTADISHMDTGAV 72
           F + I G  G    P   L +L  +    +  L LYD      +      D+   +    
Sbjct: 4   FSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPD 62

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIA------- 125
           +         E A T +D V+    V +      D+   +  G+V     G         
Sbjct: 63  IEFA-ATTDPEEAFTDVDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMR 121

Query: 126 -------------KCCPNATVNLISNPVNSTVPIAAEVFKKA 154
                        K  P+A +   SNP          +   +
Sbjct: 122 SIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPNS 163

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} Length = 169

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 71.2 bits (174), Expect = 5e-16
 Identities = 26/161 (16%), Positives = 42/161 (26%), Gaps = 30/161 (18%)

Query: 22  KVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTP--GVTADISH---MDTGAV 72
           K+A +G  G    P  +   I       V  L L D+                 ++   V
Sbjct: 3   KIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGV 61

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGI-------- 124
                       AL G D V     V       +D+   +  G++     G         
Sbjct: 62  PIEIHLTLDRRRALDGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLR 121

Query: 125 ------------AKCCPNATVNLISNPVNSTVPIAAEVFKK 153
                        + CP+A +   +NP            K+
Sbjct: 122 TIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTKQ 162

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} Length = 164

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

 Score = 64.7 bits (157), Expect = 1e-13
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEY----L 222
           +LD  R  TF+A   G+  +DV   ++GGH    +             ++         +
Sbjct: 3   VLDAARYRTFIAMEAGVSVKDVQAMLMGGHGDEMVPLPRFSTISGIPVSEFIAPDRLAQI 62

Query: 223 TNRIQNGGTEVVEAKAGAGSATLSM 247
             R + GG E+V      GSA  + 
Sbjct: 63  VERTRKGGGEIVNLLKT-GSAYYAP 86

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

 Score = 64.0 bits (155), Expect = 2e-13
 Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 34/166 (20%)

Query: 20  GFKVAILGAAGGIGQPLAM---LMKINPL-VSVLHLYDVV--NTPGVTADISHM-DTGAV 72
             K+ I+GA G     L +   L K   L  S + L D+       +        +    
Sbjct: 2   SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGA 60

Query: 73  VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNI-------------------- 112
              F     L++ +   D VI  A V     + +                          
Sbjct: 61  DLKFEKTMNLDDVIIDADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYY 120

Query: 113 ------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK 152
                        +   I K  P A     +NP+     +      
Sbjct: 121 TFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLVTRTVP 166

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 179

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 63.6 bits (154), Expect = 4e-13
 Identities = 18/83 (21%), Positives = 29/83 (34%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
           T LD  RA   +A  LG+   DV   ++ G+   T  P ++  K      +         
Sbjct: 1   TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNHSSTQYPDVNHAKVKLQAKEVGVYEAVKD 60

Query: 226 IQNGGTEVVEAKAGAGSATLSMR 248
                 E +      G+A +  R
Sbjct: 61  DSWLKGEFITTVQQRGAAVIKAR 83

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} Length = 163

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 6/95 (6%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQ------VKPPCSFTQEET 219
           T+LD  R    V E   LDPR V    +G H     +   +       +         + 
Sbjct: 2   TLLDTARMQRAVGEAFDLDPRSVSGYNLGEHGNSQFVAWSTVRVMGQPIVTLADAGDIDL 61

Query: 220 EYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 254
             +    + GG  V+  K        +  + +   
Sbjct: 62  AAIEEEARKGGFTVLNGKGYTSYGVATSAIRIAKA 96

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

 Score = 59.9 bits (144), Expect = 7e-12
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------E 217
             LD  R    + E LG+        V+G H                            +
Sbjct: 3   CNLDSARFRYLMGERLGVHSCSCHGWVIGEHGDSVPSVWSGMNVASIKLHPLDGTNKDKQ 62

Query: 218 ETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRM 253
           + + L   + +   EV++ K     A      +L  
Sbjct: 63  DWKKLHKDVVDSAYEVIKLKGYTSWAIGLSVADLAE 98

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 59.9 bits (144), Expect = 8e-12
 Identities = 12/99 (12%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
           T+LD  R    + E   + P++V   ++G H    +              +         
Sbjct: 1   TILDTARFRFLLGEYFSVAPQNVHAYIIGEHGDTELPVWSQAYIGVMPIRKLVESKGEEA 60

Query: 217 -EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 254
            ++ E +   +++   +++E K             +   
Sbjct: 61  QKDLERIFVNVRDAAYQIIEKKGATYYGIAMGLARVTRA 99

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} Length = 169

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

 Score = 59.5 bits (143), Expect = 1e-11
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 11/100 (11%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
           T+LD +R    ++E LG+D ++V   ++G H    +           +  +         
Sbjct: 1   TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEHGDSQLPLWSCTHIAGKNINEYIDDPKCNF 60

Query: 217 --EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMH 254
             E+ + +   ++  G  +++ K             +   
Sbjct: 61  TEEDKKKIAEDVKTAGATIIKNKGATYYGIAVSINTIVET 100

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} Length = 170

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

 Score = 59.1 bits (142), Expect = 1e-11
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 12/91 (13%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------ 213
           T LD  R    +A+  G++ ++V   + G H    +    S                   
Sbjct: 1   TNLDSARLRFLIAQQTGVNVKNVHAYIAGEHGDSEVPLWESATIGGVPMSDWTPLPGHDP 60

Query: 214 FTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 244
              ++ E +   ++N   +++  K     A 
Sbjct: 61  LDADKREEIHQEVKNAAYKIINGKGATNYAI 91

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 59.1 bits (142), Expect = 2e-11
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 10/82 (12%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILP----------LLSQVKPPCSFT 215
           T LD  R    +AE++ +D R V   ++G H                 +   VK      
Sbjct: 1   TSLDTARFRQSIAEMVNVDARSVHAYIMGEHGDTEFPVWSHANIGGVTIAEWVKAHPEIK 60

Query: 216 QEETEYLTNRIQNGGTEVVEAK 237
           +++   +   +++   E+++ K
Sbjct: 61  EDKLVKMFEDVRDAAYEIIKLK 82

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 168

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 57.6 bits (138), Expect = 6e-11
 Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 1/82 (1%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
           T LD +R    +A+  G+   +V   ++G H G +++PLLS         Q+   +    
Sbjct: 3   THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELP 61

Query: 226 IQNGGTEVVEAKAGAGSATLSM 247
           I     +V              
Sbjct: 62  IDEIIEDVKTKGEQIIRLKGGS 83

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.6 bits (138), Expect = 7e-11
 Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 10/100 (10%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFT 215
           T+LD  R  T +A+  G  PR V V V+G H    +      +                 
Sbjct: 2   TVLDTARLRTLIAQHCGFSPRSVHVYVIGEHGDSEVPVWSGAMIGGIPLQNMCQVCQKCD 61

Query: 216 QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255
            +  E    + +    E++E K     A      ++    
Sbjct: 62  SKILENFAEKTKRAAYEIIERKGATHYAIALAVADIVESI 101

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 9e-11
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 13/102 (12%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQ--------- 216
             LD  R    +AE LG+ P      ++G H G + + + S V       Q         
Sbjct: 3   CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTD 61

Query: 217 ---EETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHA 255
              E  + +   +     EV++ K     A      +L    
Sbjct: 62  NDSENWKEVHKMVVESAYEVIKLKGYTNWAIGLSVADLIESM 103

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 161

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 56.4 bits (135), Expect = 1e-10
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQV---KPPCSFTQEETEYL 222
             LD  R    ++E      ++V+  ++G H G   +P+ S+V        F+ +E E L
Sbjct: 3   GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQL 61

Query: 223 TNRIQNGGTEVVEAK 237
              +Q    +V+E K
Sbjct: 62  LGDLQESAMDVIERK 76

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP 210
           T LD  R    + +   +DPR VD  ++G H G +     S    
Sbjct: 1   TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATI 44

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 12/74 (16%), Positives = 23/74 (31%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 225
             LD  R    + E LG++P      V+G H   ++           +         T++
Sbjct: 3   CNLDSARFRYLIGEKLGVNPTSCHGWVLGEHGDSSVPIWSGVNVAGVTLKSLNPAIGTDK 62

Query: 226 IQNGGTEVVEAKAG 239
            +     V +    
Sbjct: 63  NKQHWKNVHKQVVE 76

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} Length = 174

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

 Score = 54.5 bits (130), Expect = 8e-10
 Identities = 16/82 (19%), Positives = 27/82 (32%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRI 226
           MLD  R   +VA+ L + PRDV   V+G H    +  +           +   + +    
Sbjct: 3   MLDSGRFRRYVADALSVSPRDVQATVIGTHGDCMVPLVRYITVNGYPIQKFIKDGVVTEK 62

Query: 227 QNGGTEVVEAKAGAGSATLSMR 248
           Q          +G        +
Sbjct: 63  QLEEIAEHTKVSGGEIVRFLGQ 84

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 165

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 9/77 (11%)

Query: 167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPL---------LSQVKPPCSFTQE 217
           +LD  R   ++++ L + PRDV+  +VG H    +L           L +       +  
Sbjct: 2   VLDTSRLKYYISQKLNVCPRDVNAHIVGAHGNKMVLLKRYITVGGIPLQEFINNKLISDA 61

Query: 218 ETEYLTNRIQNGGTEVV 234
           E E + +R  N   E+V
Sbjct: 62  ELEAIFDRTVNTALEIV 78

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} Length = 188

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

 Score = 52.0 bits (124), Expect = 7e-09
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEET------ 219
           T LD  RA   +A   G+    V    + G+   T +P     K      +E        
Sbjct: 1   TRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNAKIDGRPVKEVIKRTKWL 60

Query: 220 -EYLTNRIQNGGTEVVEAKAG--AGSATLSMR 248
            E  T  +Q  G  +++      A S  +S+ 
Sbjct: 61  EEEFTITVQKRGGALIQKWGRSSAASTAVSIA 92

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 173

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 50.9 bits (121), Expect = 1e-08
 Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 4/86 (4%)

Query: 166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK----PPCSFTQEETEY 221
           T LD  RA   +A+  G     +    V G+   T+ P L   +    P       E   
Sbjct: 2   TRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHSSTMFPDLFHAEVDGRPALELVDMEWYE 61

Query: 222 LTNRIQNGGTEVVEAKAGAGSATLSM 247
                          +A   S+  S 
Sbjct: 62  KVFIPTVAQRGAAIIQARGASSAASA 87

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]} Length = 171

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 9/46 (19%), Positives = 17/46 (36%)

Query: 168 LDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS 213
           LD  RA + +A   G     ++   V G+   T+       +   +
Sbjct: 3   LDHNRALSQIAAKTGKPVSSIEKLFVWGNHSPTMYADYRYAQIDGA 48

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	258
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	100.0
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	100.0
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	100.0
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	100.0
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	100.0
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	100.0
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	100.0
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	100.0
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	100.0
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	100.0
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	100.0
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	100.0
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	100.0
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	100.0
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	100.0
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	100.0
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.98
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.97
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.97
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.97
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	99.95
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	99.93
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	99.93
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	99.92
d1mlda2	169	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.78
d1guza2	163	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	99.75
d2cmda2	167	Malate dehydrogenase {Escherichia coli [TaxId: 562	99.75
d1uxja2	164	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	99.74
d1llda2	170	Lactate dehydrogenase {Bifidobacterium longum, str	99.73
d1pzga2	174	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	99.72
d7mdha2	188	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	99.71
d1ojua2	152	Lactate dehydrogenase {Archaeon Archaeoglobus fulg	99.7
d5mdha2	179	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	99.7
d1ez4a2	171	Lactate dehydrogenase {Lactobacillus pentosus [Tax	99.69
d1hyha2	163	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	99.69
d1y6ja2	169	Lactate dehydrogenase {Clostridium thermocellum [T	99.68
d1a5za2	172	Lactate dehydrogenase {Thermotoga maritima [TaxId:	99.68
d1o6za2	161	Malate dehydrogenase {Archaeon Haloarcula marismor	99.66
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.65
d1t2da2	165	Lactate dehydrogenase {Malaria parasite (Plasmodiu	99.64
d1i0za2	172	Lactate dehydrogenase {Human (Homo sapiens), heart	99.62
d1llca2	172	Lactate dehydrogenase {Lactobacillus casei [TaxId:	99.61
d1ldna2	168	Lactate dehydrogenase {Bacillus stearothermophilus	99.6
d1hyea2	168	MJ0490, lactate/malate dehydrogenase {Archaeon Met	99.6
d1y7ta2	173	Malate dehydrogenase {Thermus thermophilus [TaxId:	99.59
d1ldma2	169	Lactate dehydrogenase {Dogfish (Squalus acanthias)	99.56
d2ldxa2	172	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	99.55
d1b8pa2	171	Malate dehydrogenase {Aquaspirillum arcticum [TaxI	99.44
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.13
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.0
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.84
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.79
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.78
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.77
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.73
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.71
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.68
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	98.64
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	98.62
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	98.56
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	98.55
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.55
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.44
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	98.43
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.39
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.36
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	98.36
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.35
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.33
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	98.32
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.29
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	98.24
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	98.19
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.18
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	98.16
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	98.14
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	98.11
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.06
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	98.03
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	98.0
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	97.98
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.97
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.97
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.96
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	97.93
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	97.91
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.86
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.84
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	97.84
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.83
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	97.83
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.74
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	97.74
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	97.72
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.72
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	97.7
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	97.67
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.65
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.59
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.57
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	97.54
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.53
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.52
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.5
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.49
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	97.48
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.47
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	97.45
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.43
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.39
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.37
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.37
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	97.36
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.34
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.31
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.3
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.29
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.25
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.22
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.21
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.2
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.2
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.17
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.11
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.1
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.05
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.04
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.04
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.01
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.99
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.98
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.91
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.88
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.88
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.85
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.85
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.84
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.81
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.81
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.8
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.8
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.8
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.8
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.8
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.79
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.78
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.76
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.76
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.73
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.72
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.71
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.69
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.68
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.67
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.66
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.65
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.61
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.6
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	96.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.58
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	96.57
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.52
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.5
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.5
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.5
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.5
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	96.49
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.46
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.45
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.44
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.4
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.37
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.37
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.36
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	96.34
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.33
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.32
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.32
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.29
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.28
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.28
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.27
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.27
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.26
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.23
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.17
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.15
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.12
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	96.1
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.08
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.08
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.08
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.05
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.03
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.02
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	95.99
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.95
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.94
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.88
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.85
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	95.8
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.79
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.76
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	95.67
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.64
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.61
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.58
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	95.54
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.54
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.5
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	95.49
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.48
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.47
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.45
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.44
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.44
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.43
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.41
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	95.41
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	95.39
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.35
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.34
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.32
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.3
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.29
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.28
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.27
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.26
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.18
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.17
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.16
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.15
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.14
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	95.12
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	95.06
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.03
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	95.03
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	95.01
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.99
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	94.99
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.97
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.93
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	94.9
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	94.85
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.85
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	94.85
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.82
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.8
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.78
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	94.74
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	94.72
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.72
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.67
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	94.66
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.64
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.59
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	94.55
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	94.55
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.54
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.41
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.39
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.28
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	94.24
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.14
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.12
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	94.11
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.09
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	94.08
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	93.96
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.89
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.89
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	93.87
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	93.78
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.72
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.72
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.67
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.57
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	93.48
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	93.46
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.37
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	93.14
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	93.09
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	93.04
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.03
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.99
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.92
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.92
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.9
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.83
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.72
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	92.68
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.67
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.57
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.56
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	92.45
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	92.45
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	92.37
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	92.22
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.14
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.12
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.11
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	92.01
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	91.68
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	91.35
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.18
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	91.16
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.92
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.61
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.48
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.15
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.78
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.75
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.51
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.44
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	89.38
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	89.23
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	89.15
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	88.86
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	88.6
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	88.0
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	87.84
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.8
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.48
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	87.44
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	86.89
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	86.43
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	86.41
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.35
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	86.31
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	86.03
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	86.01
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.82
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.79
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	85.62
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.91
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	84.9
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.57
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.57
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	84.31
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	84.27
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	84.02
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	83.94
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.82
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	83.77
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	83.75
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	83.56
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	83.46
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	83.41
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	83.12
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	82.91
d1ls1a2	207	GTPase domain of the signal sequence recognition p	82.71
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	82.49
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	82.32
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	82.13
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	81.55
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	81.42
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	81.0
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	80.05

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=6.1e-38  Score=248.98  Aligned_cols=143  Identities=64%  Similarity=1.084  Sum_probs=133.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK  101 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~  101 (258)
                      ||+||||+|+||+++++.|..+++++||+|+|+++.+++++|+.|............+.+.+++++|||+||+++|.|++
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~~   81 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRK   81 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCCC
Confidence            89999977999999999999999999999999998899999999998665555555566778899999999999999999


Q ss_pred             CCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075          102 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus       102 ~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      +|++|+|++..|++++++++++|.+++|+++++++|||+|+|++++.+++++.++||++||||
T Consensus        82 ~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPvD~~t~~~~~~~kk~~~~p~~rViG  144 (144)
T d1mlda1          82 PGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFG  144 (144)
T ss_dssp             TTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCHHHHHHHHHHHHHHTTCCCTTSEEE
T ss_pred             CCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhhhHHHHHHHHHHhcCCCcccccC
Confidence            999999999999999999999999999999999999999999999999999999999999998

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-36  Score=241.52  Aligned_cols=143  Identities=58%  Similarity=0.953  Sum_probs=130.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+|||++|+||+++++.|.. .++.+||+|+|+++. +|+++||.|..+......+.+++++ ++++|||+||+++|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~-~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDAT-PALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCH-HHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCc-cccCCCCEEEECCCc
Confidence            7999999669999999998865 578899999999764 7899999999876666666656565 689999999999999


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |++||++|.|++..|.+++++++++|.+++|+++++++|||+|+|++++.+++++.++||++|+||
T Consensus        80 ~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPvD~m~~~~~~v~~~~~~l~~~RviG  145 (145)
T d2cmda1          80 RRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFG  145 (145)
T ss_dssp             CCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHHHHHHHHHHHHHHTTCCCGGGEEE
T ss_pred             cCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCchHHHHHHHHHHHHcCCCChhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999998

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=100.00  E-value=2e-36  Score=239.84  Aligned_cols=139  Identities=28%  Similarity=0.421  Sum_probs=122.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCC-eEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~-~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |.||+|||+ |+||+++++.|+.+++++||+|+|+++.  +|+++||+|..... .... ..++++ ++++|||+||+++
T Consensus         1 p~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i-~~~~~~-~~~~daDvVVita   77 (143)
T d1llda1           1 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSI-DGSDDP-EICRDADMVVITA   77 (143)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEE-EEESCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCcee-ecCCCH-HHhhCCcEEEEec
Confidence            469999998 9999999999999999999999999885  78999999985321 2222 223454 6899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.|+++|++|+|++..|++++++++++|.+++|+++++++|||+|    ++++++++.++||++||||+
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvD----vmt~~~~~~sg~p~~rViG~  142 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD----IATHVAQKLTGLPENQIFGS  142 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH----HHHHHHHHHHTCCTTSEEEC
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCchH----HHHHHHHHHHCCChhhccCC
Confidence            999999999999999999999999999999999999999999999    56667778888999999996

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=1.2e-35  Score=235.30  Aligned_cols=138  Identities=27%  Similarity=0.519  Sum_probs=121.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||+ |+||+++++.|+.+++++||+|+|++++  +|+++||.|...  +...+. ..++|+ ++++|||+||+++
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i-~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKI-VGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEE-EEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCcc-ccCCCH-HHhccccEEEEec
Confidence            79999998 9999999999999999999999999885  789999999752  222222 234565 7899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.|++||++|+|++.+|+++++++++++.+++|+++++++|||+|    ++++++++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViG~  142 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPMD----VMTYIMWKESGKPRNEVFGM  142 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSHH----HHHHHHHHHSCCCTTSEEEC
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCChH----HHHHHHHHHHCCChhcEecC
Confidence            999999999999999999999999999999999999999999999    45556778888999999996

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.5e-35  Score=236.28  Aligned_cols=138  Identities=25%  Similarity=0.346  Sum_probs=122.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..||+|||| |+||+++++.|+.+++++||+|+|+++.  +|+++||.|....  ..+...  +.| +++++|||+||++
T Consensus         6 ~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~--~~d-~~~l~daDvvvit   81 (148)
T d1ldna1           6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIW--HGD-YDDCRDADLVVIC   81 (148)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEE--ECC-GGGTTTCSEEEEC
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEE--ECC-HHHhccceeEEEe
Confidence            359999998 9999999999999999999999999885  7899999998642  233332  345 4789999999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      +|.+++++++|.|++.+|+++++++++.|.+++|+++++++|||+|    ++++++++.+||||+||||+
T Consensus        82 ag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPvd----~~t~~~~k~sg~p~~rViG~  147 (148)
T d1ldna1          82 AGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPVD----ILTYATWKFSGLPHERVIGS  147 (148)
T ss_dssp             CSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHH----HHHHHHHHHHTCCGGGEEEC
T ss_pred             cccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCccH----HHHHHHHHHHCcChhheecC
Confidence            9999999999999999999999999999999999999999999999    55566777788999999996

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=100.00  E-value=9.3e-35  Score=230.09  Aligned_cols=137  Identities=30%  Similarity=0.403  Sum_probs=113.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .||+|||| |+||+++++.|+.+++++||+|+|++++  +++++||.|+... ......  +.+ +++++|||+||+++|
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLY--AGD-YSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC----C-GGGGTTCSEEEECCC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEe--eCc-HHHhCCCceEEEecc
Confidence            49999998 9999999999999999999999999885  7999999997642 233332  234 478999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      .++++|++|.|++.+|++++++++++|.+++|+++++++|||+|    ++++++++.++||++||||+
T Consensus        78 ~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPvd----v~t~~~~k~sg~p~~rViG~  141 (142)
T d1y6ja1          78 ANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVD----IITYMIQKWSGLPVGKVIGS  141 (142)
T ss_dssp             C------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChHH----HHHHHHHHHHCCCccceecC
Confidence            99999999999999999999999999999999999999999999    55666777888999999996

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=100.00  E-value=6.5e-35  Score=234.87  Aligned_cols=140  Identities=23%  Similarity=0.371  Sum_probs=121.5

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +..||+|||+ |+||+++++.|..+++++||+|+|++++  +|+++||+|..............|+ ++++|||+||+++
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~-~~~~~adiVVitA   96 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDY-SVTANSKIVVVTA   96 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSG-GGGTTCSEEEECC
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccch-hhcccccEEEEec
Confidence            3469999998 9999999999999999999999999875  7899999997642111112234454 7899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |.++++|++|++++..|+++++++++.|.+++|+++++++|||+|    ++++++++.++||++||||
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPvD----v~t~~~~k~sglp~~rViG  160 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPVD----ILTYVTWKLSGLPKHRVIG  160 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHCCCGGGEEE
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    4555667777899999998

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.1e-35  Score=229.82  Aligned_cols=136  Identities=27%  Similarity=0.411  Sum_probs=119.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||+||||+|+||+++++.|..+++++||+|+|++..    +++++||.|... ....+...  .++ ++++|||+||+++
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~--~~~-~~~~~aDiVvita   78 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ--GGY-EDTAGSDVVVITA   78 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE--CCG-GGGTTCSEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEee--CCH-HHhhhcCEEEEec
Confidence            999999669999999999999999999999998642    588999999542 22333333  343 6899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |.|++||++|+|++..|+++++++++.|.+++|+++++++|||+|    ++++++++.++||++||||
T Consensus        79 G~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPvD----vmt~~~~k~sg~~~~rViG  142 (142)
T d1o6za1          79 GIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVD----LLNRHLYEAGDRSREQVIG  142 (142)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHH----HHHHHHHHHSSSCGGGEEE
T ss_pred             ccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChHH----HHHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999    5566778888999999998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.7e-35  Score=230.85  Aligned_cols=137  Identities=30%  Similarity=0.532  Sum_probs=120.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |||+|||| |+||+++++.|+.+++++||+|+|++++  +++++|+.|... .......  +.| +++++|||+||+++|
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~--~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIY--AGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEE--ECC-GGGGTTCSEEEECCC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccccccccccccc--CCc-HHHhcCCCEEEEecc
Confidence            79999998 9999999999999999999999999875  788999999753 2233322  234 478999999999999


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      .++++|++|.|++.+|+++++++++.|.++||+++++++|||+|    ++++++++.++|||+||||+
T Consensus        77 ~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPvd----~~t~~~~k~sg~p~~rViGt  140 (140)
T d1a5za1          77 VPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD----VLTYFFLKESGMDPRKVFGS  140 (140)
T ss_dssp             CCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHHHHHHHHTCCTTTEEEC
T ss_pred             cccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcHH----HHHHHHHHHHCcCccceeCc
Confidence            99999999999999999999999999999999999999999999    55556677778999999995

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=100.00  E-value=3.5e-35  Score=233.49  Aligned_cols=137  Identities=19%  Similarity=0.284  Sum_probs=114.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC--CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~--~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||+ |+||+++++.|+.+++++||+|+|++++  +++++||+|....  ......  +.|+ ++++|||+||+++
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~--~~d~-~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIV--INDW-AALADADVVISTL   77 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEE--ESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCcccee--ccCH-HHhccccEEEEec
Confidence            59999997 9999999999999999999999999886  6889999998632  223322  3454 6899999999999


Q ss_pred             CCCC----CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           97 GVPR----KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        97 g~~~----~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.++    +||++|+|++..|+++++++++.+++++|+++++++|||+|    ++++++++.+|||++||||+
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~k~sg~p~~rViGt  146 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD----VITALFQHVTGFPAHKVIGT  146 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcHH----HHHHHHHHHhCCCccceeCc
Confidence            9877    77899999999999999999999999999999999999999    56666778888999999995

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=100.00  E-value=1e-34  Score=229.96  Aligned_cols=138  Identities=32%  Similarity=0.496  Sum_probs=120.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||| |+||+++++.|+.+++++||+|+|+++.  +++.+|+.|...  ....+.. .++| +++++|||+||+++
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~-~~~~-~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVT-GSND-YADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEE-EESC-GGGGTTCSEEEECC
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEE-ecCC-HHHhcCCeEEEEEE
Confidence            79999998 9999999999999999999999999986  677889988752  2223322 2345 47899999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.|+++|++|.|++.+|+++++++++.|.++||+++++++|||+|+    +++++++.++||++||||+
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPvd~----~~~~~~~~sg~p~~rviG~  142 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPLDI----MTHVAWVRSGLPKERVIGM  142 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSHHH----HHHHHHHHHCSCGGGEEEE
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCChHH----HHHHHHHHhCCChHhEeeC
Confidence            9999999999999999999999999999999999999999999995    4455667677999999996

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.2e-34  Score=226.87  Aligned_cols=138  Identities=30%  Similarity=0.481  Sum_probs=118.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----hhHHHHHhcCCC--CCeEEEE-eCCCchHhhhCCCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDT--GAVVRGF-LGQPQLENALTGMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----~g~~~dl~~~~~--~~~v~~~-~~~~d~~~a~~~aDiVI   93 (258)
                      |||+||||+|+||+++++.|+.+++++||+|+|+++.    +|+++||.|...  ...++.. ..+.| +++++|||+||
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d-~~~l~~aDvVV   79 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDEN-LRIIDESDVVI   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTC-GGGGTTCSEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcch-HHHhccceEEE
Confidence            7999999779999999999999999999999999863    578899999643  2233332 22345 47899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      +|||.|++||++|+|++..|+++++++++.+.+++|++++ ++|||+|    ++++++++.++||++||||
T Consensus        80 itAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~ii-vVtNPvD----~mt~~~~k~sg~p~~rViG  145 (145)
T d1hyea1          80 ITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIF-VITNPVD----VMTYKALVDSKFERNQVFG  145 (145)
T ss_dssp             ECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEE-ECSSSHH----HHHHHHHHHHCCCTTSEEE
T ss_pred             EecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEE-EEcCchH----HHHHHHHHHHCcCcccccC
Confidence            9999999999999999999999999999999999998765 5899999    4555667777899999998

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-34  Score=232.65  Aligned_cols=142  Identities=24%  Similarity=0.370  Sum_probs=122.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      ..+..||+|||+ |+||+++++.|..+++++||+|+|++++  +|+++||+|..+.........+.|+ ++++|||+||+
T Consensus        16 ~~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvi   93 (159)
T d2ldxa1          16 KLSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVII   93 (159)
T ss_dssp             CCCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEE
T ss_pred             cCCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEE
Confidence            455569999998 9999999999999999999999999875  7899999998743221111223454 78999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      ++|.|+++|++|+|++..|+++++++++.|.+++|+++++++|||+|+    +++++++.+||||+||||
T Consensus        94 tag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPvDv----~t~~~~k~sg~p~~rV~G  159 (159)
T d2ldxa1          94 TAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPVDI----LTYVVWKISGFPVGRVIG  159 (159)
T ss_dssp             CCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSHHH----HHHHHHHHHCSCTTTEEE
T ss_pred             ecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcHHH----HHHHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999995    455567777899999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=100.00  E-value=1.6e-34  Score=229.74  Aligned_cols=138  Identities=25%  Similarity=0.400  Sum_probs=111.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCC-CeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~-~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .|||+|||+ |+||+++++.|+++++++||+|+|+++.  +|+++||+|.... ......  +.|+ ++++|||+||+++
T Consensus         5 ~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~--~~d~-~~~~~adivvita   80 (146)
T d1ez4a1           5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIY--SGEY-SDCKDADLVVITA   80 (146)
T ss_dssp             BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEE--ECCG-GGGTTCSEEEECC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEe--eccH-HHhccccEEEEec
Confidence            469999997 9999999999999999999999999885  7899999997642 222222  3454 6799999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |.|+++|++|.|++..|+++++++++.|.+++|+++++++|||+|    ++++++++.++||++||||+
T Consensus        81 g~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPvd----v~t~~~~k~sg~p~~rViG~  145 (146)
T d1ez4a1          81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVD----ILTYATWKFSGFPKERVIGS  145 (146)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCccH----HHHHHHHHHHCcCccceecC
Confidence            999999999999999999999999999999999999999999999    55566777788999999996

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=1.4e-33  Score=225.14  Aligned_cols=138  Identities=30%  Similarity=0.519  Sum_probs=118.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..||+|||+ |+||+++++.|.++++ +||+|+|++++  +++++|+.|...  ........ +.+ +++++|||+||++
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~-~~~-~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSG-SNT-YDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEE-ECC-GGGGTTCSEEEEC
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccccCCCcEEEe-ccc-ccccCCCcEEEEe
Confidence            469999997 9999999999998886 69999999885  799999999752  22222221 233 4789999999999


Q ss_pred             CCCCCCCCCc-----hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           96 AGVPRKPGMT-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        96 ag~~~~~g~~-----r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      +|.+++||++     |++++..|+++++++++.|.++||+++++++|||+|    ++++++++.++||++||||+
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPvD----~~t~~~~~~sg~p~~rViG~  149 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD----VMVQLLHQHSGVPKNKIIGL  149 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH----HHHHHHHHHHCCCGGGEEEC
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchH----HHHHHHHHHHCCCchheecc
Confidence            9999999876     999999999999999999999999999999999999    55566778888999999996

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=3.3e-33  Score=224.00  Aligned_cols=140  Identities=33%  Similarity=0.567  Sum_probs=120.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +++||+|||| |.||+++++.|...++. ||+|+|+++.  +++++|+.|...  ..... ...+++++++++|||+||+
T Consensus         6 k~~KI~IIGa-G~VG~~lA~~l~~~~~~-el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~-~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGS-GMIGGTMGYLCALRELA-DVVLYDVVKGMPEGKALDLSHVTSVVDTNVS-VRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCC-EEEEECSSSSHHHHHHHHHHHHHHHTTCCCC-EEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCc-eEEEEEeccccchhHHHHHhhhccccCCeeE-EeccCchhhhhcCCCeEEE
Confidence            4579999998 99999999999988874 8999999986  789999999742  11111 1234677789999999999


Q ss_pred             cCCCCCCCCC-----chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           95 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        95 ~ag~~~~~g~-----~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ++|.+++||+     +|++++..|+++++++++.+.++||+++++++|||+|+    +++++++.++||++||||+
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPvd~----lt~~~~~~sg~p~~rViG~  154 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDC----MVKVMCEASGVPTNMICGM  154 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH----HHHHHHHHHCCCGGGEEEC
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcHHH----HHHHHHHHhCcChhcEecC
Confidence            9999999985     89999999999999999999999999999999999994    5556677778999999996

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.98  E-value=8e-33  Score=218.93  Aligned_cols=136  Identities=29%  Similarity=0.514  Sum_probs=108.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||+ |+||+++|+.|+++++. |++|+|+++.  +++++|+.|...  +...+. ..+.|+ ++++|||+||+++
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~-dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i-~~~~d~-~~~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELG-DIVLLDIVEGVPQGKALDLYEASPIEGFDVRV-TGTNNY-ADTANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCS-EEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE-EEESCG-GGGTTCSEEEECC
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcc-eEEEEeeccccchhHHHHhhccccccCCCCEE-EecCcH-HHhcCCCEEEEee
Confidence            49999998 99999999999998875 7999999886  788999999863  222222 224565 6799999999999


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |.|++||++|.|++..|++++++++++|.+++|+++++++|||+|+|+    +++++.++||++||||
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t----~~~~~~sglp~~rViG  141 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMT----YLAAEVSGFPKERVIG  141 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHH----HHHHHHHCCCGGGEEE
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHH----HHHHHHHCcCcccccC
Confidence            999999999999999999999999999999999999999999999555    4566777899999998

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.97  E-value=2.7e-31  Score=212.86  Aligned_cols=143  Identities=22%  Similarity=0.357  Sum_probs=116.3

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTG   88 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~-----~ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~   88 (258)
                      ++|+||+||||+|+||+++++.|+.++++     .+|+|+|+++.    ++..+|+.+..++.... +..+++.+++++|
T Consensus         1 s~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~   79 (154)
T d5mdha1           1 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKD-VIATDKEEIAFKD   79 (154)
T ss_dssp             CCCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEE-EEEESCHHHHTTT
T ss_pred             CCceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccc-cccCcccccccCC
Confidence            36789999998899999999999877664     38999999875    33445556665432222 2334566789999


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCc-EEEEecCCCCCcHHHHHHHHHHhC-CCCCCcEEEE
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA-TVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV  165 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a-~viv~tNPvd~~~~i~t~~~~~~~-~~~~~kviG~  165 (258)
                      +|+||+++|.|+++|++|+|++..|+++++++++.|.+++|++ ++|++|||+|+    +++++++.+ ++|++||+||
T Consensus        80 ~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a~~~~~iivvsNPvD~----mt~v~~k~s~g~P~~~v~~m  154 (154)
T d5mdha1          80 LDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGNPANT----NCLTASKSAPSIPKENFSCL  154 (154)
T ss_dssp             CSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHH----HHHHHHHTCTTSCGGGEEEC
T ss_pred             ceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhCCCceEEEEecCcHHH----HHHHHHHHcCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999999864 68889999994    555566655 8999999986

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.97  E-value=1.5e-30  Score=212.45  Aligned_cols=143  Identities=22%  Similarity=0.308  Sum_probs=120.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~-----ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      ++.||+|+||+|+||+++++.|++.++++     +|+|+|++..    ++.++|+.|+.++.... ...+++.+++++|+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~-~~~~~~~~~~~~~a  101 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLRE-VSIGIDPYEVFEDV  101 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEE-EEEESCHHHHTTTC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccC-ccccccchhhccCC
Confidence            45699999988999999999999876654     8899998774    57788999987653333 33345678999999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      |+||+++|.|++||++|.|++..|++|++++++.|.+++| +++|+++|||+|+||+++   ++.++++|++||+||
T Consensus       102 DvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~NPvd~~t~ia---~k~a~~ip~~~i~~m  175 (175)
T d7mdha1         102 DWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALIC---LKNAPDIPAKNFHAL  175 (175)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEEC
T ss_pred             ceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecCcHHHHHHHH---HHHCCCCCHHHEeCC
Confidence            9999999999999999999999999999999999999987 799999999999655532   244688999999986

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=3e-30  Score=206.70  Aligned_cols=142  Identities=26%  Similarity=0.457  Sum_probs=116.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcE-----EEEEeCCCC----hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-----LHLYDVVNT----PGVTADISHMDTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~e-----i~L~D~~~~----~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +||||+||||+|+||+++++.|+.++++++     +.|+|.+..    .+..+|+.+...+. .+.+..+++.+++++||
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL-LAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-EEEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhcccccc-ccccccCCchhhhcccc
Confidence            468999999889999999999999888753     455655543    56678888876543 33233345567899999


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |+||+++|.+++||++|+|++..|+++++++++.|.+++| +++++++|||+|+|++++   ++++++||++|||.
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsNPvDv~t~~a---~k~asg~p~~rvia  154 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIA---YKNAPGLNPRNFTA  154 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHH---HHTCTTSCGGGEEE
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecCcHHHHHHHH---HHHcCCCcHHhccC
Confidence            9999999999999999999999999999999999999985 799999999999666542   34568899999985

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=3.3e-28  Score=197.60  Aligned_cols=139  Identities=19%  Similarity=0.220  Sum_probs=109.5

Q ss_pred             CCeEEEEcCCCchHHHH--HHHHHhCCC--CcEEEEEeCCCC--hhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPL--AMLMKINPL--VSVLHLYDVVNT--PGVTADISHMD----TGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~--a~~L~~~~~--~~ei~L~D~~~~--~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +|||+|||| |++|.+.  +..+.....  .+||+|+|+++.  +++++|+.|..    .....+.. .++|.+++++||
T Consensus         1 k~KI~iIGa-Gs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~-~~td~~~al~ga   78 (169)
T d1s6ya1           1 RLKIATIGG-GSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIH-LTLDRRRALDGA   78 (169)
T ss_dssp             CEEEEEETT-TCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEE-EESCHHHHHTTC
T ss_pred             CcEEEEECC-ChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceee-ecCCchhhcCCC
Confidence            379999998 9887654  334444332  369999999885  57888886642    12233322 356778999999


Q ss_pred             CEEEEcCCCCCCCCCchhhH--------------------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHH
Q 025075           90 DLVIIPAGVPRKPGMTRDDL--------------------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE  149 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~--------------------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~  149 (258)
                      |+||+++|.+++++++|+|+                    +.+|+++++++++.|+++|||||++++|||+|    ++++
T Consensus        79 DvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPvd----v~t~  154 (169)
T d1s6ya1          79 DFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG----MVTE  154 (169)
T ss_dssp             SEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH----HHHH
T ss_pred             CEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChHH----HHHH
Confidence            99999999998887777665                    46899999999999999999999999999999    5666


Q ss_pred             HHHHhCCCCCCcEEEEe
Q 025075          150 VFKKAGTYDPKKLLGVT  166 (258)
Q Consensus       150 ~~~~~~~~~~~kviG~t  166 (258)
                      ++++.  +|++||||+|
T Consensus       155 ~~~k~--~p~~kviGlC  169 (169)
T d1s6ya1         155 AVLRY--TKQEKVVGLC  169 (169)
T ss_dssp             HHHHH--CCCCCEEECC
T ss_pred             HHHHH--CCCCCEEeeC
Confidence            77776  5889999997

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=7.6e-28  Score=194.14  Aligned_cols=137  Identities=17%  Similarity=0.253  Sum_probs=104.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh--C--CCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKI--N--PLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~--~--~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      |||+|||| |++|.+.++....  .  ...+||+|+|+++++ +.+.|+.|..+........ +++.+++++|||+||++
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~-t~~~~~~l~~aDvVVit   78 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI-SDTFEGAVVDAKYVIFQ   78 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE-CSSHHHHHTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE-ecCcccccCCCCEEEEe
Confidence            79999998 9999998864332  1  224799999999863 3456666654322233222 45678999999999999


Q ss_pred             CCCCCCCCCchhhHHHH--------------------hHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           96 AGVPRKPGMTRDDLFNI--------------------NAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~--------------------n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      +|.+++++++|++++..                    +++.+.++.+ +.++||+||++++|||+|    ++|+++++. 
T Consensus        79 a~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~-~~~~~p~a~~i~vtNPvd----iit~~~~~~-  152 (162)
T d1up7a1          79 FRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVD-TVRKTSNATIVNFTNPSG----HITEFVRNY-  152 (162)
T ss_dssp             CCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSHH----HHHHHHHHT-
T ss_pred             cccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhh-hhccCCCeEEEEeCCHHH----HHHHHHHHh-
Confidence            99999888888776544                    5566666655 778899999999999999    677788887 


Q ss_pred             CCCCCcEEEEe
Q 025075          156 TYDPKKLLGVT  166 (258)
Q Consensus       156 ~~~~~kviG~t  166 (258)
                       +|++|++|+|
T Consensus       153 -~p~~rviGlC  162 (162)
T d1up7a1         153 -LEYEKFIGLC  162 (162)
T ss_dssp             -TCCSSEEECC
T ss_pred             -CCCCCEEeeC
Confidence             5889999987

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.93  E-value=9.9e-27  Score=188.15  Aligned_cols=138  Identities=22%  Similarity=0.252  Sum_probs=106.4

Q ss_pred             CCCeEEEEcCCCchHHHHHH--HHHhCC-C-CcEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAM--LMKINP-L-VSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMD   90 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~--~L~~~~-~-~~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aD   90 (258)
                      +..||+|||| |++|.+.+.  .|.... + .+||+|+|++++  ++.+.++.+..  .....+.. .++|++++++|||
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~eal~~AD   79 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFA-ATTDPEEAFTDVD   79 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEE-EESCHHHHHSSCS
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceE-ecCChhhccCCCC
Confidence            4569999998 999987554  232222 1 369999999986  33455555432  22222322 2468889999999


Q ss_pred             EEEEcCCCCCCCCCchhhHHH--------------------HhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHH
Q 025075           91 LVIIPAGVPRKPGMTRDDLFN--------------------INAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV  150 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~--------------------~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~  150 (258)
                      +||+++|.++++|++|.+++.                    +|+++++++++.|+++||+||++++|||+|    ++|++
T Consensus        80 ~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPvd----v~t~~  155 (167)
T d1u8xx1          80 FVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAA----IVAEA  155 (167)
T ss_dssp             EEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHH----HHHHH
T ss_pred             EEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHHH----HHHHH
Confidence            999999999999999988754                    579999999999999999999999999999    66667


Q ss_pred             HHHhCCCCCCcEEE
Q 025075          151 FKKAGTYDPKKLLG  164 (258)
Q Consensus       151 ~~~~~~~~~~kviG  164 (258)
                      +++.  +|++|||.
T Consensus       156 ~~k~--~P~~rVI~  167 (167)
T d1u8xx1         156 TRRL--RPNSKILN  167 (167)
T ss_dssp             HHHH--STTCCEEE
T ss_pred             HHHH--CCcccccC
Confidence            7776  69999984

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.5e-25  Score=179.20  Aligned_cols=136  Identities=20%  Similarity=0.181  Sum_probs=103.5

Q ss_pred             CCeEEEEcCCCchHHHHHH--HHH-hCCC-CcEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchHhhhCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAM--LMK-INPL-VSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~--~L~-~~~~-~~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      .|||+|||| |++|++++.  .|+ ...+ .+||+|+|++++  ++...|+.|..  .....+. ..++|++++++|||+
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i-~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKF-EKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEE-EEESCHHHHHTTCSE
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEE-EEeCChhhcccCCCe
Confidence            579999998 999988654  233 3333 359999999986  45667777653  2223332 235788999999999


Q ss_pred             EEEcCCC------------------CCCCCCchhhH--------HHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHH
Q 025075           92 VIIPAGV------------------PRKPGMTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP  145 (258)
Q Consensus        92 VIi~ag~------------------~~~~g~~r~d~--------~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~  145 (258)
                      ||++++.                  +++++++|.++        +.+|+++++++++.|+++||+||++++|||+|    
T Consensus        80 Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~TNPvd----  155 (171)
T d1obba1          80 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIF----  155 (171)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHH----
T ss_pred             EeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEECChHH----
Confidence            9998764                  44556676664        56899999999999999999999999999999    


Q ss_pred             HHHHHHHHhCCCCCCcEEE
Q 025075          146 IAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus       146 i~t~~~~~~~~~~~~kviG  164 (258)
                      ++++++++.++   -|+||
T Consensus       156 v~t~~~~k~~~---~k~iG  171 (171)
T d1obba1         156 EGTTLVTRTVP---IKAVG  171 (171)
T ss_dssp             HHHHHHHHHSC---SEEEE
T ss_pred             HHHHHHHHhcC---CCccC
Confidence            66677777754   48887

>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.78  E-value=1e-19  Score=146.75  Aligned_cols=92  Identities=61%  Similarity=0.857  Sum_probs=84.8

Q ss_pred             EeeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      +|.|||+||+++||++|+++|++|+++|+||||+++++|+||++.+...++.++++++.++++++|++|++.|++.+++.
T Consensus         1 ~T~LDs~R~~~~la~~l~v~~~~V~~~ViGeHg~~t~vp~~s~~~~~~~~~~~~~~~l~~~v~~~~~eii~~k~~~~~~~   80 (169)
T d1mlda2           1 VTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSAT   80 (169)
T ss_dssp             CCHHHHHHHHHHHHHHTTCCGGGCBCCEEECSSGGGEEECGGGCBSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCC
T ss_pred             CcccHHHHHHHHHHHHHCcCHHHeeEEEEEcCCCcceeehhhhhccCCCCcHHHHHHHHHHHHHhHHHHHHhhcCcChHh
Confidence            37899999999999999999999999999999999999999998877778899999999999999999999997778888


Q ss_pred             HHHHHHHHHhHh
Q 025075          245 LSMRLNLRMHAS  256 (258)
Q Consensus       245 ~s~a~a~~~~~~  256 (258)
                      ++++.++++++.
T Consensus        81 ~~~~~a~~~~~~   92 (169)
T d1mlda2          81 LSMAYAGARFVF   92 (169)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            899999888764

>d1guza2 d.162.1.1 (A:143-305) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=99.75  E-value=4.2e-19  Score=142.41  Aligned_cols=88  Identities=30%  Similarity=0.475  Sum_probs=79.5

Q ss_pred             eccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC-----CCCHHHHHHHHHHHHhhHHHHhhhhCCCC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~-----~~~~~~~~~i~~~v~~~~~~i~~~k~g~~  241 (258)
                      +|||+||+++||+++|++|++|+++|||+| |++++|+||++++..     .++++.++++.++++++|++|++.+ |+|
T Consensus         3 ~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~s~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (163)
T d1guza2           3 VLDAARFRSFIAMELGVSMQDINACVLGGH-GDAMVPVVKYTTVAGIPISDLLPAETIDKLVERTRNGGAEIVEHL-KQG   80 (163)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEECCEEECS-GGGEEECGGGCEETTEEHHHHSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccCHhhcccCCccccccCCHHHHHHHHHHHHHHHHHHHHHh-cCC
Confidence            599999999999999999999999999999 789999999998532     2567778899999999999999976 789


Q ss_pred             chHHHHHHHHHHhHh
Q 025075          242 SATLSMRLNLRMHAS  256 (258)
Q Consensus       242 ~~~~s~a~a~~~~~~  256 (258)
                      |+.++++.++++++.
T Consensus        81 sa~~a~~~~~~~~~~   95 (163)
T d1guza2          81 SAFYAPASSVVEMVE   95 (163)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CcchhHHHHHHHHHH
Confidence            999999999999875

>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=1.1e-18  Score=140.12  Aligned_cols=90  Identities=63%  Similarity=0.885  Sum_probs=82.0

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATL  245 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~~  245 (258)
                      |.|||+||++++|+++|++|++|+++|+||||+++++|++|++.+ ..+++.+++++.++++++|++|++.|.|++++++
T Consensus         2 T~LDs~R~~~~iA~~l~v~~~~V~~~ViGghg~~~~~p~~s~~~~-~~~~~~~~~~l~~~v~~~g~~ii~~~~~~~~~~~   80 (167)
T d2cmda2           2 TTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQVPG-VSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATL   80 (167)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGCCCCEEECSSTTTEEECGGGCTT-CCCCHHHHHHHHHHHHHHHHHHHHHHTTSCSCCH
T ss_pred             cccHHHHHHHHHHHHHCcCHHHeEEEEEEcCCCceEeeecccccC-CCCcHHHHHHHHHHHHhhhhhhhhhhccCcchHH
Confidence            789999999999999999999999999999988888887777654 3578889999999999999999999988899999


Q ss_pred             HHHHHHHHhHh
Q 025075          246 SMRLNLRMHAS  256 (258)
Q Consensus       246 s~a~a~~~~~~  256 (258)
                      |+|.++++++.
T Consensus        81 ~~a~a~~~~~~   91 (167)
T d2cmda2          81 SMGQAAARFGL   91 (167)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>d1uxja2 d.162.1.1 (A:144-307) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=99.74  E-value=8.9e-19  Score=140.58  Aligned_cols=89  Identities=26%  Similarity=0.390  Sum_probs=79.8

Q ss_pred             eccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----C-CCCHHHHHHHHHHHHhhHHHHhhhhCCCC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----C-SFTQEETEYLTNRIQNGGTEVVEAKAGAG  241 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~-~~~~~~~~~i~~~v~~~~~~i~~~k~g~~  241 (258)
                      .||++||+++||+++|++|.+|+++|||+| |+++||+||+++..    . .+++..++++.++++++|++|++.+ +||
T Consensus         3 ~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~g~~~~~~~~~~~~~~~~~~v~~~g~~ii~~~-~kg   80 (164)
T d1uxja2           3 VLDAARYRTFIAMEAGVSVKDVQAMLMGGH-GDEMVPLPRFSTISGIPVSEFIAPDRLAQIVERTRKGGGEIVNLL-KTG   80 (164)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEECCEECS-GGGEECCGGGEEETTEEGGGTSCHHHHHHHHHHHHTHHHHHHHHH-SSS
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCceeeeeeeeecCCCchhhccchhhHHHHHHHHHHHHHHHHHHH-hcC
Confidence            589999999999999999999999999999 78999999998842    2 2466778999999999999999887 689


Q ss_pred             chHHHHHHHHHHhHhc
Q 025075          242 SATLSMRLNLRMHASV  257 (258)
Q Consensus       242 ~~~~s~a~a~~~~~~~  257 (258)
                      |+.||+|.++++++++
T Consensus        81 s~~~a~a~a~~~i~~~   96 (164)
T d1uxja2          81 SAYYAPAAATAQMVEA   96 (164)
T ss_dssp             CCCHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHH
Confidence            9999999999998763

>d1llda2 d.162.1.1 (A:150-319) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=99.73  E-value=1.9e-18  Score=139.32  Aligned_cols=87  Identities=18%  Similarity=0.331  Sum_probs=76.7

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----C---------CCCCHHHHHHHHHHHHhhHHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----P---------CSFTQEETEYLTNRIQNGGTE  232 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~---------~~~~~~~~~~i~~~v~~~~~~  232 (258)
                      |.|||+||+++||+++|+++++|+++|||+| |+++||+||++++    .         ..++...++++.++++++|++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~g~~   79 (170)
T d1llda2           1 TNLDSARLRFLIAQQTGVNVKNVHAYIAGEH-GDSEVPLWESATIGGVPMSDWTPLPGHDPLDADKREEIHQEVKNAAYK   79 (170)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBSS-STTCEECTTSCEETTEEGGGCCCCTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccchhhcccCCCchhhhcccccccccchhhHHHHHHHHhhhhhH
Confidence            6799999999999999999999999999999 7899999999873    1         124566788999999999999


Q ss_pred             HhhhhCCCCchHHHHHHHHHHhHh
Q 025075          233 VVEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       233 i~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      |++.|   |++++++|.++++++.
T Consensus        80 i~~~k---g~t~~~~a~~~~~~~~  100 (170)
T d1llda2          80 IINGK---GATNYAIGMSGVDIIE  100 (170)
T ss_dssp             HHTSC---CSCCHHHHHHHHHHHH
T ss_pred             HHhhh---ccchhhhHHHHHHHHH
Confidence            99964   6789999999999875

>d1pzga2 d.162.1.1 (A:164-334) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.72  E-value=3.3e-18  Score=138.37  Aligned_cols=89  Identities=30%  Similarity=0.457  Sum_probs=77.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----------CCCHHHHHHHHHHHHhhHHHHhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  235 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~  235 (258)
                      |.||++||+++||+++|++|++|+++||||| |+++||+||++++..          .....+..++..+.+.+|.+++.
T Consensus         2 c~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   80 (174)
T d1pzga2           2 CMLDSGRFRRYVADALSVSPRDVQATVIGTH-GDCMVPLVRYITVNGYPIQKFIKDGVVTEKQLEEIAEHTKVSGGEIVR   80 (174)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhCcCHHHcEEEEEccC-CCccccceeeeeECCEechhhccccchhhhhhhhhhheeeccceeEee
Confidence            7899999999999999999999999999999 789999999998431          23455677788888888999988


Q ss_pred             hhCCCCchHHHHHHHHHHhHh
Q 025075          236 AKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       236 ~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      .+ ++|++.+++|.+++++++
T Consensus        81 ~~-~~gst~~~~a~a~~~~~~  100 (174)
T d1pzga2          81 FL-GQGSAYYAPAASAVAMAT  100 (174)
T ss_dssp             HH-SSSCCCHHHHHHHHHHHH
T ss_pred             ee-cccchhhhhHHHHHHHHH
Confidence            76 689999999999999865

>d7mdha2 d.162.1.1 (A:198-385) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=99.71  E-value=6.5e-18  Score=138.36  Aligned_cols=89  Identities=21%  Similarity=0.184  Sum_probs=75.1

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCCC----C-CCHH--HHHHHHHHHHhhHHHHhhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC----S-FTQE--ETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~~----~-~~~~--~~~~i~~~v~~~~~~i~~~k  237 (258)
                      |.|||+|||++||+++|++|++|+. +|||+| |++|||+||++++..    + +.++  ..+++.++++++|++|++.|
T Consensus         1 T~LDs~R~r~~lA~~l~V~~~~V~~~iI~GeH-Gds~vp~~S~a~v~g~~l~~~~~~~~~~~~~~~~~v~~~~~~ii~~k   79 (188)
T d7mdha2           1 TRLDENRAKCQLALKAGVFYDKVSNVTIWGNH-STTQVPDFLNAKIDGRPVKEVIKRTKWLEEEFTITVQKRGGALIQKW   79 (188)
T ss_dssp             CHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTCCCHHHHHHHHHHHHHTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHHHHCcCHHHeeEEEEEEcC-CCcEeeeeeccEeeccchhhcccchhhhHHHHHHHHhhhHHHHHHhh
Confidence            6799999999999999999999985 588999 789999999998532    2 2223  35889999999999999998


Q ss_pred             CCCCchHHHHHHHHHHhHhc
Q 025075          238 AGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~~  257 (258)
                      +  +++++|+|.|+++++++
T Consensus        80 g--~s~~~s~A~A~~~~~~a   97 (188)
T d7mdha2          80 G--RSSAASTAVSIADAIKS   97 (188)
T ss_dssp             S--SCCHHHHHHHHHHHHHH
T ss_pred             c--ccchhhHHHHHHHHHHH
Confidence            3  56788899999998753

>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.70  E-value=4.2e-18  Score=134.71  Aligned_cols=82  Identities=17%  Similarity=0.210  Sum_probs=69.8

Q ss_pred             eeccHHHHHHHHHHHhCCCCCce-eEEEEecCCCCceeeccCCCCCCCCCCHHHHHHHHHHHHhhHHHHhhhhCCCCchH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT  244 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v-~~~v~G~h~g~~~vp~~S~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~~~~~  244 (258)
                      |.|||+|||++|++..+   .++ ++||+||| ||++||+||.++...   +.++++|.++++++|++|+++|   |+|+
T Consensus         2 t~LDsaR~r~~l~~~~~---~~v~~a~ViGeH-Gds~vp~~S~~~i~g---~~~~~~i~~~v~~~g~eIi~~k---G~t~   71 (152)
T d1ojua2           2 NQLDSQRLKERLYNAGA---RNIRRAWIIGEH-GDSMFVAKSLADFDG---EVDWEAVENDVRFVAAEVIKRK---GATI   71 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC---BSCCCCCEEBCS-STTCEECGGGCCCBS---CCCHHHHHHHHHTTHHHHHHHH---SSCC
T ss_pred             CccHHHHHHHHHHccCC---CCcceeEEEecC-CCccccccccccccC---ccchhHhHHHHHHHHHHhhhhc---ccee
Confidence            57999999999987654   445 79999999 899999999987533   2346789999999999999976   6799


Q ss_pred             HHHHHHHHHhHhc
Q 025075          245 LSMRLNLRMHASV  257 (258)
Q Consensus       245 ~s~a~a~~~~~~~  257 (258)
                      ||+|.++++++++
T Consensus        72 ~gia~a~~~iv~a   84 (152)
T d1ojua2          72 FGPAVAIYRMVKA   84 (152)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            9999999999874

>d5mdha2 d.162.1.1 (A:155-333) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.70  E-value=5.8e-18  Score=137.68  Aligned_cols=89  Identities=25%  Similarity=0.260  Sum_probs=75.1

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEE-ecCCCCceeeccCCCCCCC-----------CCCHHHHHHHHHHHHhhHHHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVV-GGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEV  233 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~-G~h~g~~~vp~~S~~~~~~-----------~~~~~~~~~i~~~v~~~~~~i  233 (258)
                      |.|||+|||+++|+++|++|++|+++|+ |+| |+++||+||++++..           ..+....+++.+++++++++|
T Consensus         1 T~LDs~R~r~~la~~l~V~~~~V~~~vI~GeH-G~s~vp~~S~a~v~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i   79 (179)
T d5mdha2           1 TRLDHNRAKAQIALKLGVTSDDVKNVIIWGNH-SSTQYPDVNHAKVKLQAKEVGVYEAVKDDSWLKGEFITTVQQRGAAV   79 (179)
T ss_dssp             CHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECTTCEEECSSCEEEHHHHHCCHHHHHTHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHCcCHHHcEEEEEEEcC-CCcccccchhceecCcchhhhhhhccccchhhHHHHHHHHHhccHhh
Confidence            6799999999999999999999998655 999 899999999998421           122344678999999999999


Q ss_pred             hhhhCCCCchHHHHHHHHHHhHhc
Q 025075          234 VEAKAGAGSATLSMRLNLRMHASV  257 (258)
Q Consensus       234 ~~~k~g~~~~~~s~a~a~~~~~~~  257 (258)
                      ++.|  +++++|++|.|+++++++
T Consensus        80 ~~~~--~~ss~~~~a~a~~~~~~~  101 (179)
T d5mdha2          80 IKAR--KLSSAMSAAKAICDHVRD  101 (179)
T ss_dssp             HHHH--SSCCCHHHHHHHHHHHHH
T ss_pred             hhcc--CcchHHHHHHHHHHHHHH
Confidence            9987  367889999999998753

>d1ez4a2 d.162.1.1 (A:163-334) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=99.69  E-value=8.8e-18  Score=135.35  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=78.2

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC----------CCCHHHHHHHHHHHHhhHHHHhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVE  235 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~----------~~~~~~~~~i~~~v~~~~~~i~~  235 (258)
                      |.||++||+++||+++|++|.+|+++|||+| |+++||+||++++..          .++.++++++.++++.+++++++
T Consensus         1 T~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   79 (171)
T d1ez4a2           1 TSLDSSRLRVALGKQFNVDPRSVDAYIMGEH-GDSEFAAYSTATIGTRPVRDVAKEQGVSDDDLAKLEDGVRNKAYDIIN   79 (171)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEESSS-SSSCEECGGGCEETTEEHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEccC-CCcccccccccccCCccceeecccccccchhhhhheeehhhhhHHHHH
Confidence            6799999999999999999999999999999 789999999998431          35677789999999999999999


Q ss_pred             hhCCCCchHHHHHHHHHHhHh
Q 025075          236 AKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       236 ~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +|   +++++|+|.++++++.
T Consensus        80 ~k---~s~~~a~a~~~~~~~~   97 (171)
T d1ez4a2          80 LK---GATFYGIGTALMRISK   97 (171)
T ss_dssp             HH---SCCCHHHHHHHHHHHH
T ss_pred             hh---hhHhHHHHHHHHHHHH
Confidence            76   6899999999999875

>d1hyha2 d.162.1.1 (A:167-329) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=99.69  E-value=6.8e-18  Score=135.05  Aligned_cols=87  Identities=25%  Similarity=0.352  Sum_probs=74.6

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CCC---CHHHHHHHHHHHHhhHHHHhhhhC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CSF---TQEETEYLTNRIQNGGTEVVEAKA  238 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~~---~~~~~~~i~~~v~~~~~~i~~~k~  238 (258)
                      |.|||+||++++|+++|++|++|+++|||+| |+++||+||++++.    ..+   .+..++++.+++++++++|++.| 
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~i~~~v~~~~~~i~~~k-   79 (163)
T d1hyha2           2 TLLDTARMQRAVGEAFDLDPRSVSGYNLGEH-GNSQFVAWSTVRVMGQPIVTLADAGDIDLAAIEEEARKGGFTVLNGK-   79 (163)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGCBCCEEBCT-TTTCEECTTTCEETTEEGGGC-----CCHHHHHHHHHHHHHHHHHHH-
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCcCccceeccccCCchHHHHhccccchHHHHHHHHhhhHHHHHHHH-
Confidence            5799999999999999999999999999999 78999999999842    222   22346899999999999999976 


Q ss_pred             CCCchHHHHHHHHHHhHh
Q 025075          239 GAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       239 g~~~~~~s~a~a~~~~~~  256 (258)
                        |+++|+++.++.+++.
T Consensus        80 --g~~~~~~a~~~~~~~~   95 (163)
T d1hyha2          80 --GYTSYGVATSAIRIAK   95 (163)
T ss_dssp             --SSCCHHHHHHHHHHHH
T ss_pred             --HhHHHhHHHHhhHHHH
Confidence              6789999999888765

>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=99.68  E-value=1e-17  Score=134.85  Aligned_cols=87  Identities=25%  Similarity=0.482  Sum_probs=74.3

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC--------CCHHHHHHHHHHHHhhHHHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS--------FTQEETEYLTNRIQNGGTEV  233 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~--------~~~~~~~~i~~~v~~~~~~i  233 (258)
                      |.||++||+++||+++|++|.+|+++|||+| |++++|+||++++    +..        +++++++++.++++++++++
T Consensus         1 T~LDs~R~~~~la~~lgv~~~~V~~~ViG~H-g~t~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i   79 (169)
T d1y6ja2           1 TVLDSIRFRYLLSEKLGVDVKNVHGYIIGEH-GDSQLPLWSCTHIAGKNINEYIDDPKCNFTEEDKKKIAEDVKTAGATI   79 (169)
T ss_dssp             THHHHHHHHHHHHTTTTCCTTTEECCEEBCS-SSSCEECCTTCEETTBCSCCC-----------CCHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHceEEEEccC-CCCCccCeeecccCchhHHHHHHHhhhhhhHHHHHHHHHHHhhhhhhh
Confidence            6799999999999999999999999999999 7899999999883    222        23445689999999999999


Q ss_pred             hhhhCCCCchHHHHHHHHHHhHh
Q 025075          234 VEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       234 ~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +++|   ++++|++|.+++++++
T Consensus        80 ~~~~---~s~~~a~a~~~~~~~~   99 (169)
T d1y6ja2          80 IKNK---GATYYGIAVSINTIVE   99 (169)
T ss_dssp             HHHT---SCCCHHHHHHHHHHHH
T ss_pred             hhhh---hhhhhHHHHHHHHHHH
Confidence            9965   6899999999999875

>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.68  E-value=2.1e-17  Score=133.18  Aligned_cols=87  Identities=26%  Similarity=0.415  Sum_probs=76.7

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC-----------CCCCHHHHHHHHHHHHhhHHHHh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP-----------CSFTQEETEYLTNRIQNGGTEVV  234 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~-----------~~~~~~~~~~i~~~v~~~~~~i~  234 (258)
                      |.||++||+++||+++|++|.+|+++|||+| |++++|+||++++.           ..++.+.++++.++++.+|++|+
T Consensus         2 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~t~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   80 (172)
T d1a5za2           2 TVLDTARLRTLIAQHCGFSPRSVHVYVIGEH-GDSEVPVWSGAMIGGIPLQNMCQVCQKCDSKILENFAEKTKRAAYEII   80 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHCcCHHHeEEEEEecC-CCCcccchhhcccCCcchhhhhhccccccHHHhhhhHHHHhccceeEe
Confidence            5799999999999999999999999999999 78999999998832           12567778899999999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHhHh
Q 025075          235 EAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       235 ~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +.|   +++++++|.++++++.
T Consensus        81 ~~~---~~~~~~~a~a~~~~~~   99 (172)
T d1a5za2          81 ERK---GATHYAIALAVADIVE   99 (172)
T ss_dssp             HHH---SCCCHHHHHHHHHHHH
T ss_pred             ecc---ccchhhHHHHHHHHHH
Confidence            976   6788999999888764

>d1o6za2 d.162.1.1 (A:163-330) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.66  E-value=4.3e-17  Score=129.63  Aligned_cols=89  Identities=24%  Similarity=0.383  Sum_probs=77.6

Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC---CCCHHHHHHHHHHHHhhHHHHhhhhCC
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---SFTQEETEYLTNRIQNGGTEVVEAKAG  239 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~---~~~~~~~~~i~~~v~~~~~~i~~~k~g  239 (258)
                      || |.||++|++++||+++|++|++|+++|||+| |++++|+||++++..   .+..++++++.++++..++++++.+  
T Consensus         1 ~G-t~LD~~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--   76 (161)
T d1o6za2           1 FG-GRLDSARFRYVLSEEFDAPVQNVEGTILGEH-GDAQVPVFSKVSVDGTDPEFSGDEKEQLLGDLQESAMDVIERK--   76 (161)
T ss_dssp             CC-HHHHHHHHHHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTBCCCCCHHHHHHHHHHHHHHHHHHHTTT--
T ss_pred             CC-chHHHHHHHHHHHHHHCcCHHHeEEEEEeCC-CCceeeehhhhcccccccccchHHHHHHHHHhhhhHHHHHHhh--
Confidence            35 7899999999999999999999999999999 789999999988432   3567788899999999999999865  


Q ss_pred             CCchHHHHHHHHHHhHh
Q 025075          240 AGSATLSMRLNLRMHAS  256 (258)
Q Consensus       240 ~~~~~~s~a~a~~~~~~  256 (258)
                       +++.+++|.+++++..
T Consensus        77 -~~s~~~~a~a~~~~~~   92 (161)
T d1o6za2          77 -GATEWGPARGVAHMVE   92 (161)
T ss_dssp             -SSCCHHHHHHHHHHHH
T ss_pred             -hhhhhHHHHhhHhhhH
Confidence             6788999999888764

>d1t2da2 d.162.1.1 (A:151-315) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.64  E-value=1.1e-16  Score=128.20  Aligned_cols=86  Identities=24%  Similarity=0.352  Sum_probs=75.8

Q ss_pred             eccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----------CCCCHHHHHHHHHHHHhhHHHHhhh
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----------CSFTQEETEYLTNRIQNGGTEVVEA  236 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----------~~~~~~~~~~i~~~v~~~~~~i~~~  236 (258)
                      .||++|+++++|+++|++|++|+++|||+| |++++|+||+++..          ....+++++++.++++++++++++.
T Consensus         2 ~LD~~R~~~~la~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~   80 (165)
T d1t2da2           2 VLDTSRLKYYISQKLNVCPRDVNAHIVGAH-GNKMVLLKRYITVGGIPLQEFINNKLISDAELEAIFDRTVNTALEIVNL   80 (165)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGEECCEEBCS-STTCEECGGGCEETTEEHHHHHHTTSSCHHHHHHHHHHHHTHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCCcccceeecccCCcchhhhcccchhhhhhhhhhhhhhhhhhHHHhhh
Confidence            589999999999999999999999999999 78999999998732          1356677889999999999999996


Q ss_pred             hCCCCchHHHHHHHHHHhHh
Q 025075          237 KAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       237 k~g~~~~~~s~a~a~~~~~~  256 (258)
                      |   +++++++|.++++++.
T Consensus        81 ~---~~~~~a~a~a~~~~~~   97 (165)
T d1t2da2          81 H---ASPYVAPAAAIIEMAE   97 (165)
T ss_dssp             T---SSCCHHHHHHHHHHHH
T ss_pred             c---cceeechhHHHHHHHH
Confidence            5   6788999999998865

>d1i0za2 d.162.1.1 (A:161-332) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=99.62  E-value=1.1e-16  Score=128.85  Aligned_cols=87  Identities=22%  Similarity=0.284  Sum_probs=75.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC------------CCCHHHHHHHHHHHHhhHHHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEV  233 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~------------~~~~~~~~~i~~~v~~~~~~i  233 (258)
                      |.||++|++++||+++|+++.+|+++|||+| |+++||+||++++..            ..+.+.++++.++++++++++
T Consensus         3 T~LDs~R~~~~lA~~lgv~~~~V~~~ViG~H-g~~~vp~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d1i0za2           3 CNLDSARFRYLMAEKLGIHPSSCHGWILGEH-GDSSVAVWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKMVVESAYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCEEBCS-STTCEECGGGCEETTEEHHHHCTTTTSSSCSSCTHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHhCcCHHHceEEEEccC-CCcccccHhhceeCCeeHHHhhhhhccchhHHHHHHHHHHhccceEEe
Confidence            6799999999999999999999999999999 789999999998421            123445789999999999999


Q ss_pred             hhhhCCCCchHHHHHHHHHHhHh
Q 025075          234 VEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       234 ~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      ++.|   +++++++|.+++++++
T Consensus        82 ~~~~---~~s~~a~a~~~~~~~~  101 (172)
T d1i0za2          82 IKLK---GYTNWAIGLSVADLIE  101 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHH
T ss_pred             eecc---cccchHHHHHHHHHHH
Confidence            9976   5788999999998875

>d1llca2 d.162.1.1 (A:165-334) Lactate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.61  E-value=2.4e-17  Score=132.89  Aligned_cols=87  Identities=21%  Similarity=0.352  Sum_probs=73.7

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCC----CCC-------CCHHHHHHHHHHHHhhHHHHh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKP----PCS-------FTQEETEYLTNRIQNGGTEVV  234 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~----~~~-------~~~~~~~~i~~~v~~~~~~i~  234 (258)
                      |.||++||+++||+++|+++++|+++|||+| |++++|+||++++    ...       ++.+.++++.+++++++++++
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~   79 (172)
T d1llca2           1 TSLDTARFRQSIAEMVNVDARSVHAYIMGEH-GDTEFPVWSHANIGGVTIAEWVKAHPEIKEDKLVKMFEDVRDAAYEII   79 (172)
T ss_dssp             THHHHHHHHHHHHHHSCCCTTSCEEEEEBSS-SSSCEEEEEEEESTTCCSSSSSSCSCSSSSSSSSTTTTTTGGGTTTTS
T ss_pred             CchHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCcceeeeeccccCCccHHHHHhhhhccchhHHHHHHHhhcchHHHHH
Confidence            6799999999999999999999999999999 7899999999873    211       223345678888999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHhHh
Q 025075          235 EAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       235 ~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      ++   +|+++|++|.+++++++
T Consensus        80 ~~---kg~~~~a~a~~~~~~~~   98 (172)
T d1llca2          80 KL---KGATFYGIATALARISK   98 (172)
T ss_dssp             SS---SSCTTHHHHHHHHHHHH
T ss_pred             Hh---hhhhhhhhHHHHHHHHH
Confidence            85   47899999999988875

>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.60  E-value=3e-16  Score=125.62  Aligned_cols=87  Identities=24%  Similarity=0.417  Sum_probs=72.9

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CCC-------CHHHHHHHHHHHHhhHHHHh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CSF-------TQEETEYLTNRIQNGGTEVV  234 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~~-------~~~~~~~i~~~v~~~~~~i~  234 (258)
                      |.||++||+++||+++|+++++|+++|||+| |++++|+||++++.    .++       .....+++.++++..+++|+
T Consensus         1 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~   79 (168)
T d1ldna2           1 TILDTARFRFLLGEYFSVAPQNVHAYIIGEH-GDTELPVWSQAYIGVMPIRKLVESKGEEAQKDLERIFVNVRDAAYQII   79 (168)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGEEEEEEBCS-STTCEEEEEEEEETTEESTTTSGGGTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHhCcCHHHeEEEEEcCC-CCccccchhhcccCCcchhhhhhhhhhhhccchhhhhhhhhhhHHHHH
Confidence            5799999999999999999999999999999 78999999998832    111       13345788999999999999


Q ss_pred             hhhCCCCchHHHHHHHHHHhHh
Q 025075          235 EAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       235 ~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      ..|   +++.++++.++.+++.
T Consensus        80 ~~~---~~s~~~~a~~~~~~~~   98 (168)
T d1ldna2          80 EKK---GATYYGIAMGLARVTR   98 (168)
T ss_dssp             HHH---SCCCHHHHHHHHHHHH
T ss_pred             Hhh---ccccchHHHHHhhHHH
Confidence            876   5788899988887764

>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.60  E-value=5.4e-17  Score=130.27  Aligned_cols=87  Identities=21%  Similarity=0.387  Sum_probs=67.9

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CCC---CHHHHHHHHHHHHhhHHHHhhhhC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CSF---TQEETEYLTNRIQNGGTEVVEAKA  238 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~~---~~~~~~~i~~~v~~~~~~i~~~k~  238 (258)
                      |.|||+||++++|+++|+++++|+++|||+| |+++||+||++++.    ..+   ....++++.++++++++.+++.| 
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~vp~~s~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k-   80 (168)
T d1hyea2           3 THLDSLRFKVAIAKFFGVHIDEVRTRIIGEH-GDSMVPLLSATSIGGIPIQKFERFKELPIDEIIEDVKTKGEQIIRLK-   80 (168)
T ss_dssp             THHHHHHHHHHHHHHHTCCGGGEECCEEECS-STTEEECGGGCEETTEEGGGCGGGGGCCHHHHHHHHHHHTTSCCC---
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CCccccchhheeECCEecccccccchhhhhhHHHHHhhhHHHHHHhc-
Confidence            6899999999999999999999999999999 78999999998732    122   22236789999999999999865 


Q ss_pred             CCCchHHHHHHHHHHhHh
Q 025075          239 GAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       239 g~~~~~~s~a~a~~~~~~  256 (258)
                        ++++++++.+++.++.
T Consensus        81 --~~~~~~~a~~~~~~~~   96 (168)
T d1hyea2          81 --GGSEFGPAAAILNVVR   96 (168)
T ss_dssp             ------CCHHHHHHHHHH
T ss_pred             --cCccccchhhhhHHHH
Confidence              5677888887777654

>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.59  E-value=5.4e-16  Score=124.98  Aligned_cols=89  Identities=21%  Similarity=0.249  Sum_probs=69.8

Q ss_pred             EeeccHHHHHHHHHHHhCCCCCceeEE-EEecCCCCceeeccCCCCCC----CCC-CHH-HHHHHHHHHHhhHHHHhhhh
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPP----CSF-TQE-ETEYLTNRIQNGGTEVVEAK  237 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~~~-v~G~h~g~~~vp~~S~~~~~----~~~-~~~-~~~~i~~~v~~~~~~i~~~k  237 (258)
                      +|.|||+|||++||+++|++|++|+++ |||+| |++++|+||++++.    .++ .+. ..++..++....++.++..+
T Consensus         1 ~T~LDs~R~r~~lA~~l~v~~~~V~~~iI~GeH-G~s~vp~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (173)
T d1y7ta2           1 MTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNH-SSTMFPDLFHAEVDGRPALELVDMEWYEKVFIPTVAQRGAAIIQAR   79 (173)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCS-STTCEEECSSCEETTEEGGGTSCHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHCcCHHHcEEEEEEEec-CccEEeeeeeeeEcCccHHHhcccccccchhhhhhhhhHHHHHHHh
Confidence            478999999999999999999999986 66999 78999999999953    223 222 23455556666677777765


Q ss_pred             CCCCchHHHHHHHHHHhHh
Q 025075          238 AGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       238 ~g~~~~~~s~a~a~~~~~~  256 (258)
                        +++++|++|.++++++.
T Consensus        80 --~~~s~~~~a~a~~~~~~   96 (173)
T d1y7ta2          80 --GASSAASAANAAIEHIR   96 (173)
T ss_dssp             --SSCCHHHHHHHHHHHHH
T ss_pred             --ccCchhhHHHHHHHHHH
Confidence              46788999999998875

>d1ldma2 d.162.1.1 (A:161-329) Lactate dehydrogenase {Dogfish (Squalus acanthias) [TaxId: 7797]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Dogfish (Squalus acanthias) [TaxId: 7797]

Probab=99.56  E-value=5.2e-16  Score=124.42  Aligned_cols=87  Identities=21%  Similarity=0.289  Sum_probs=72.4

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCCC---------CCCHHHHHHHHHHHHhhHHHHhhh
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC---------SFTQEETEYLTNRIQNGGTEVVEA  236 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~~---------~~~~~~~~~i~~~v~~~~~~i~~~  236 (258)
                      |.||++||+++||++||++|++|+++|||+| |++++|+||++++..         ..+.....++.+++++++++++..
T Consensus         3 T~LDs~R~~~~lA~~l~v~~~~V~~~ViG~H-g~~~v~~~s~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (169)
T d1ldma2           3 CNLDSARFRYLMGERLGVHSCSCHGWVIGEH-GDSVPSVWSGMNVASIKLHPLDGTNKDKQDWKKLHKDVVDSAYEVIKL   81 (169)
T ss_dssp             THHHHHHHHHHHHHHHTSCGGGCBCCBCBCS-STTCCBCGGGCEETTEESHHHHSSTTTTTTTTHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCcCHHHeEEEEEcCC-CccchhhhhhcccCCcchHHhhcccchhhhcceeEEEecCceEEEecc
Confidence            6799999999999999999999999999999 789999999988421         123334557777888888888886


Q ss_pred             hCCCCchHHHHHHHHHHhHh
Q 025075          237 KAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       237 k~g~~~~~~s~a~a~~~~~~  256 (258)
                      |   +++++++|.++++++.
T Consensus        82 ~---~s~~~a~a~~~~~~~~   98 (169)
T d1ldma2          82 K---GYTSWAIGLSVADLAE   98 (169)
T ss_dssp             H---SSCCHHHHHHHHHHHH
T ss_pred             c---cchhhHHHHHHhhhhh
Confidence            5   5788999999988875

>d2ldxa2 d.162.1.1 (A:160-331) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.8e-15  Score=121.47  Aligned_cols=87  Identities=26%  Similarity=0.401  Sum_probs=72.8

Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEecCCCCceeeccCCCCCC----CC--------CCHHHHHHHHHHHHhhHHHH
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPP----CS--------FTQEETEYLTNRIQNGGTEV  233 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G~h~g~~~vp~~S~~~~~----~~--------~~~~~~~~i~~~v~~~~~~i  233 (258)
                      |.||++|+++++|+++|++|++|+++|||+| |++++|+||++++.    ..        ...+..+++.++.+..++.+
T Consensus         3 T~LD~~R~~~~vA~~l~v~~~~V~~~ViG~H-s~~~ip~~s~~~v~g~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~   81 (172)
T d2ldxa2           3 CNLDSARFRYLIGEKLGVNPTSCHGWVLGEH-GDSSVPIWSGVNVAGVTLKSLNPAIGTDKNKQHWKNVHKQVVEGGYEV   81 (172)
T ss_dssp             THHHHHHHHHHHHHHHTCCTTSSCCCEEECS-SSCEEECGGGCBSSCSSSSBSTTTCSCSSSSSSCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCcCHHHcEEEEEcCC-CCccccceecceecCcchhhHHHHhhhhhhhhhhhhhhhhhccceeeh
Confidence            5799999999999999999999999999999 67999999999832    11        12234568889999999999


Q ss_pred             hhhhCCCCchHHHHHHHHHHhHh
Q 025075          234 VEAKAGAGSATLSMRLNLRMHAS  256 (258)
Q Consensus       234 ~~~k~g~~~~~~s~a~a~~~~~~  256 (258)
                      +..|   +++.+++|.++++++.
T Consensus        82 ~~~k---~~s~~~~a~~~~~~~~  101 (172)
T d2ldxa2          82 LDMK---GYTSWAIGLSVTDLAR  101 (172)
T ss_dssp             HHHH---SSCCHHHHHHHHHHHH
T ss_pred             hhcc---cchhHHHHHHHhHHHH
Confidence            9876   5788999999888764

>d1b8pa2 d.162.1.1 (A:159-329) Malate dehydrogenase {Aquaspirillum arcticum [TaxId: 87645]}

class: Alpha and beta proteins (a+b)
fold: LDH C-terminal domain-like
superfamily: LDH C-terminal domain-like
family: Lactate & malate dehydrogenases, C-terminal domain
domain: Malate dehydrogenase
species: Aquaspirillum arcticum [TaxId: 87645]

Probab=99.44  E-value=7.6e-14  Score=111.86  Aligned_cols=86  Identities=19%  Similarity=0.193  Sum_probs=65.3

Q ss_pred             eccHHHHHHHHHHHhCCCCCceeE-EEEecCCCCceeeccCCCCCCC-CC------CHHHHHHHHHHHHhhHHHHhhhhC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-SF------TQEETEYLTNRIQNGGTEVVEAKA  238 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g~~~vp~~S~~~~~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~  238 (258)
                      .||++||+++||+++|++|++|++ +|||+| |++++|+||++++.. ++      .....+++.+.+++.+..+...+ 
T Consensus         2 ~LD~~R~r~~lA~kl~v~~~~V~~~iI~Geh-G~s~vp~~S~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   79 (171)
T d1b8pa2           2 RLDHNRALSQIAAKTGKPVSSIEKLFVWGNH-SPTMYADYRYAQIDGASVKDMINDDAWNRDTFLPTVGKRGAAIIDAR-   79 (171)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEESCEEEBCS-STTCEEECSSCEETTEEHHHHHCCHHHHHHTHHHHHHTHHHHHHHHH-
T ss_pred             cchHHHHHHHHHHHHCcCHHHeEEEEEEEcC-CCcEEeeeecceeecccchhhhhhhcchhhhHHHHHHHHHHHHHHHH-
Confidence            489999999999999999999996 677988 889999999998542 11      12224567777788888888887 


Q ss_pred             CCCchHHHHHHHHHHh
Q 025075          239 GAGSATLSMRLNLRMH  254 (258)
Q Consensus       239 g~~~~~~s~a~a~~~~  254 (258)
                      +++++.++.+.++..+
T Consensus        80 ~~~~~~~~~~a~~~~~   95 (171)
T d1b8pa2          80 GVSSAASAANAAIDHI   95 (171)
T ss_dssp             SSCCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhHHHHHHH
Confidence            5556655555555544

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2e-10  Score=93.32  Aligned_cols=120  Identities=13%  Similarity=0.175  Sum_probs=84.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhH-----HH-HHhcCCC--------------CCeEEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----TA-DISHMDT--------------GAVVRGF   76 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~-----~~-dl~~~~~--------------~~~v~~~   76 (258)
                      ..||+|||| |.+|+.+|..++..|+  +|.+||++++   ++.     .+ .+.....              ...+.  
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~--   78 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGH--TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIA--   78 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEE--
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCC--cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhcc--
Confidence            359999998 9999999999999998  9999999874   111     00 0110000              01222  


Q ss_pred             eCCCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC-cEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           77 LGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        77 ~~~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~-a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                       .++|+.+++++||+||-++              .+|+++.+++...+++++|. +++  .||.+..   .++++.... 
T Consensus        79 -~~~d~~~a~~~ad~ViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l---~i~~la~~~-  137 (192)
T d1f0ya2          79 -TSTDAASVVHSTDLVVEAI--------------VENLKVKNELFKRLDKFAAEHTIF--ASNTSSL---QITSIANAT-  137 (192)
T ss_dssp             -EESCHHHHTTSCSEEEECC--------------CSCHHHHHHHHHHHTTTSCTTCEE--EECCSSS---CHHHHHTTS-
T ss_pred             -ccchhHhhhcccceehhhc--------------ccchhHHHHHHHHHhhhcccCcee--eccCccc---ccchhhhhc-
Confidence             3467888999999999986              34688899999999999864 544  8887764   344544433 


Q ss_pred             CCCCCcEEEEe
Q 025075          156 TYDPKKLLGVT  166 (258)
Q Consensus       156 ~~~~~kviG~t  166 (258)
                       ..|+|++|+-
T Consensus       138 -~~p~r~ig~H  147 (192)
T d1f0ya2         138 -TRQDRFAGLH  147 (192)
T ss_dssp             -SCGGGEEEEE
T ss_pred             -cCHhHEEeec
Confidence             4578898873

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.00  E-value=1.7e-10  Score=93.38  Aligned_cols=119  Identities=18%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh--HHH----HHhc-CCC--------CCeEEEEeCCCc
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG--VTA----DISH-MDT--------GAVVRGFLGQPQ   81 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g--~~~----dl~~-~~~--------~~~v~~~~~~~d   81 (258)
                      ..||+|||| |.+|+.+|..++..|+  +|++||++++   ++  ...    ++.. ...        ...+..   +.+
T Consensus         4 I~~vaViGa-G~mG~~iA~~~a~~G~--~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~~   77 (186)
T d1wdka3           4 VKQAAVLGA-GIMGGGIAYQSASKGT--PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRP---TLS   77 (186)
T ss_dssp             CSSEEEECC-HHHHHHHHHHHHHTTC--CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEE---ESS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeec---ccc
Confidence            458999998 9999999999999998  8999999874   11  111    1111 111        012332   334


Q ss_pred             hHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC-cEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           82 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~-a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      + +++.+||+||.++              .+|+++.+++.++|.+++|. +++  +||.+..   .++++....  -.|+
T Consensus        78 ~-~~~~~adlViEav--------------~E~l~~K~~lf~~l~~~~~~~~Ii--aSnTS~l---~i~~la~~~--~~p~  135 (186)
T d1wdka3          78 Y-GDFGNVDLVVEAV--------------VENPKVKQAVLAEVENHVREDAIL--ASNTSTI---SISLLAKAL--KRPE  135 (186)
T ss_dssp             S-TTGGGCSEEEECC--------------CSCHHHHHHHHHHHHTTSCTTCEE--EECCSSS---CHHHHGGGC--SCGG
T ss_pred             c-ccccccceeeeee--------------cchHHHHHHHHHHHHhhcCCCeeE--Eeccccc---cHHHHHHhc--cCch
Confidence            3 5799999999986              24688899999999999864 544  8888775   334544444  3468


Q ss_pred             cEEEEe
Q 025075          161 KLLGVT  166 (258)
Q Consensus       161 kviG~t  166 (258)
                      |++|+-
T Consensus       136 r~~g~H  141 (186)
T d1wdka3         136 NFVGMH  141 (186)
T ss_dssp             GEEEEE
T ss_pred             heEeec
Confidence            888874

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.84  E-value=1.4e-08  Score=82.64  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=76.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC----------------CCCeEEEEeCCCchHh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN   84 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~----------------~~~~v~~~~~~~d~~~   84 (258)
                      |||+|||+ |+||.++|..|+..|+  +|..||+|+.+  ...|....                ....+.   .++|+.+
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~--~V~g~D~n~~~--i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~~~   72 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGH--EVIGVDVSSTK--IDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDFKK   72 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHH--HHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCHHH
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCC--cEEEEeCCHHH--HHHhcccCCcccchhhhhhhhhhhcccccc---cCCCHHH
Confidence            79999998 9999999999999998  99999998642  11111110                011222   3467889


Q ss_pred             hhCCCCEEEEcCCCCCCCC-CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCCCcHHHHHHHHHH
Q 025075           85 ALTGMDLVIIPAGVPRKPG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        85 a~~~aDiVIi~ag~~~~~g-~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd~~~~i~t~~~~~  153 (258)
                      ++++||+++++.+.|.... ......+   ..+.+.+.+.++...++..+++ -|-|..+.-.++..++.+
T Consensus        73 ~i~~~d~i~i~VpTP~~~~~~~d~~~~---~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~  140 (202)
T d1mv8a2          73 AVLDSDVSFICVGTPSKKNGDLDLGYI---ETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (202)
T ss_dssp             HHHTCSEEEECCCCCBCTTSSBCCHHH---HHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             HHhhCCEEEEecCccccccccccchhh---hhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhc
Confidence            9999999999998875432 2222222   2334445555555556766655 456666443333333433

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.79  E-value=4.3e-08  Score=77.45  Aligned_cols=101  Identities=15%  Similarity=0.135  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH-HHhcC--CCC-CeEE--EEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHM--DTG-AVVR--GFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~-dl~~~--~~~-~~v~--~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +||+|||+ |.+|..++..|...|+  +|.+||+++.+...+ +....  ..+ ....  ....++|+.++++++|+||+
T Consensus         2 k~iaIiGa-G~~G~~~A~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           2 KTYAVLGL-GNGGHAFAAYLALKGQ--SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECc-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            59999998 9999999999999998  999999976422211 11110  000 0010  01124578899999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV  140 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPv  140 (258)
                      +...+                ...++++++..+- ++.+++...|..
T Consensus        79 ~v~~~----------------~~~~~~~~i~~~l~~~~~iv~~~g~~  109 (184)
T d1bg6a2          79 VVPAI----------------HHASIAANIASYISEGQLIILNPGAT  109 (184)
T ss_dssp             CSCGG----------------GHHHHHHHHGGGCCTTCEEEESSCCS
T ss_pred             EEchh----------------HHHHHHHHhhhccCCCCEEEEeCCCC
Confidence            86211                1356777777774 666665554443

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.78  E-value=1.9e-08  Score=80.45  Aligned_cols=98  Identities=22%  Similarity=0.258  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC----CCCC--eEEEEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTGA--VVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~----~~~~--~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      |||+|||+ |.+|+++|..|...++  +|.||.++.++.....+...    .+..  ....+..++|++++++++|+||+
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~--~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~   77 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGN--EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCC--EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--EEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhc
Confidence            79999998 9999999999999887  99999875433222233221    1111  11123346788999999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +..                ...++++++++..+-++..+++++
T Consensus        78 avp----------------s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          78 GVS----------------TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             CSC----------------GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             ccc----------------hhhhHHHHHhhccccccceecccc
Confidence            862                112466777777776665665554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.77  E-value=7.9e-09  Score=83.48  Aligned_cols=73  Identities=14%  Similarity=0.222  Sum_probs=53.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcC--------CCCCeEEEEeCCCchHhhhCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DTGAVVRGFLGQPQLENALTGM   89 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~--------~~~~~v~~~~~~~d~~~a~~~a   89 (258)
                      +.|.||+|||| |.+|+++|..|...|+  +|.||+++++....+.-.+.        ..+..+.   .++|++++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~--~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~---~t~~l~~a~~~a   78 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCR--EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNIT---FTSDVEKAYNGA   78 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEE--EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEE---EESCHHHHHTTC
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCC--eEEEEEecHHHHHHHhhcccccccccccccccccc---cchhhhhccCCC
Confidence            34568999998 9999999999999887  99999998653222221221        1223343   357899999999


Q ss_pred             CEEEEcC
Q 025075           90 DLVIIPA   96 (258)
Q Consensus        90 DiVIi~a   96 (258)
                      |+||++.
T Consensus        79 d~iiiav   85 (189)
T d1n1ea2          79 EIILFVI   85 (189)
T ss_dssp             SCEEECS
T ss_pred             CEEEEcC
Confidence            9999985

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.73  E-value=4.6e-08  Score=76.60  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||+|||+ |.+|++++..|...|+  +|..||++++.. .+.+..-.    . . .  .++ .+++++||+||++.  |
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~--~V~~~d~~~~~~~~a~~~~~~----~-~-~--~~~-~~~~~~~DiIilav--p   66 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGH--YLIGVSRQQSTCEKAVERQLV----D-E-A--GQD-LSLLQTAKIIFLCT--P   66 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHTTSC----S-E-E--ESC-GGGGTTCSEEEECS--C
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHhhcc----c-e-e--eee-cccccccccccccC--c
Confidence            79999998 9999999999999998  999999986421 12221111    1 1 1  123 36899999999985  1


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN  138 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tN  138 (258)
                                    ...+.++.+.+..+- |+.+++.+++
T Consensus        67 --------------~~~~~~vl~~l~~~l~~~~iv~~~~s   92 (165)
T d2f1ka2          67 --------------IQLILPTLEKLIPHLSPTAIVTDVAS   92 (165)
T ss_dssp             --------------HHHHHHHHHHHGGGSCTTCEEEECCS
T ss_pred             --------------Hhhhhhhhhhhhhhcccccceeeccc
Confidence                          223455666676664 5666665544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.71  E-value=2.1e-08  Score=78.06  Aligned_cols=101  Identities=17%  Similarity=0.220  Sum_probs=68.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+|||+ |.+|+.++..|.+.|+  +|.++++++.....................  .+..+++.++|+||++..   
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~D~iii~vk---   72 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGH--EVQGWLRVPQPYCSVNLVETDGSIFNESLT--ANDPDFLATSDLLLVTLK---   72 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSEEEEEEECTTSCEEEEEEE--ESCHHHHHTCSEEEECSC---
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCC--ceEEEEcCHHHhhhhccccCCccccccccc--cchhhhhcccceEEEeec---
Confidence            79999998 9999999999999998  999999987532221111111111111111  223578899999999963   


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCCCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNS  142 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNPvd~  142 (258)
                       +..            ..+.++.+..+ .++..|+.+.|-++.
T Consensus        73 -a~~------------~~~~~~~l~~~~~~~~~Iv~~qNG~~~  102 (167)
T d1ks9a2          73 -AWQ------------VSDAVKSLASTLPVTTPILLIHNGMGT  102 (167)
T ss_dssp             -GGG------------HHHHHHHHHTTSCTTSCEEEECSSSCT
T ss_pred             -ccc------------hHHHHHhhccccCcccEEeeccCcccH
Confidence             211            34566666665 478889889998764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.4e-07  Score=76.24  Aligned_cols=100  Identities=16%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVI   93 (258)
                      |.|+||+|+||+|++|++++..|+.+|+  +|.++++++.+...  ...    ..+..+.+    ..++.++++++|+||
T Consensus         1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~--~V~~~~R~~~~~~~--~~~----~~~~~~~gD~~d~~~l~~al~~~d~vi   72 (205)
T d1hdoa_           1 MAVKKIAIFGATGQTGLTTLAQAVQAGY--EVTVLVRDSSRLPS--EGP----RPAHVVVGDVLQAADVDKTVAGQDAVI   72 (205)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCGGGSCS--SSC----CCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEEcChhhccc--ccc----cccccccccccchhhHHHHhcCCCEEE
Confidence            4577999999999999999999999997  99999987642110  111    11222221    235678899999999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      .++|........     ..+....+.+++.+++.+-+
T Consensus        73 ~~~g~~~~~~~~-----~~~~~~~~~l~~aa~~~~v~  104 (205)
T d1hdoa_          73 VLLGTRNDLSPT-----TVMSEGARNIVAAMKAHGVD  104 (205)
T ss_dssp             ECCCCTTCCSCC-----CHHHHHHHHHHHHHHHHTCC
T ss_pred             EEeccCCchhhh-----hhhHHHHHHHHHHHHhcCCC
Confidence            998764322221     12345566777788877644

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=3.7e-08  Score=86.03  Aligned_cols=173  Identities=15%  Similarity=0.028  Sum_probs=103.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe--CCCchHhhhCCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQPQLENALTGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~--~~~d~~~a~~~aDiVIi   94 (258)
                      +.+.|||.|+||+|++|++++..|.++|+  +|+.+|.........++...    ......  ...++.++++++|.||.
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~----~~~~~D~~~~~~~~~~~~~~d~Vih   85 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGH--YVIASDWKKNEHMTEDMFCD----EFHLVDLRVMENCLKVTEGVDHVFN   85 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCSSSCGGGTCS----EEEECCTTSHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCCccchhhhcccC----cEEEeechhHHHHHHHhhcCCeEee
Confidence            45679999999999999999999999998  99999976532111111111    111111  11234556789999999


Q ss_pred             cCCCCCCC---CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHH---H---HHHHHHhCCCCCCcEEEE
Q 025075           95 PAGVPRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI---A---AEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        95 ~ag~~~~~---g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i---~---t~~~~~~~~~~~~kviG~  165 (258)
                      +++.....   ...-......|+.....+.....+.+.. .+|..|.-...-..-   .   ...........|....|.
T Consensus        86 ~a~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~  164 (363)
T d2c5aa1          86 LAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGL  164 (363)
T ss_dssp             CCCCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHH
T ss_pred             cccccccccccccccccccccccchhhHHHHhHHhhCcc-ccccccccccccccccccccccccccccCCcCCCCCHHHH
Confidence            98653221   1233445677888899999998887654 344333211100000   0   000000111233445555


Q ss_pred             eeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +.+...++.....+..|++...++ ..|+|.+
T Consensus       165 sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~  196 (363)
T d2c5aa1         165 EKLATEELCKHYNKDFGIECRIGRFHNIYGPF  196 (363)
T ss_dssp             HHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeeeEeccC
Confidence            555566666677788888888888 4589977

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.62  E-value=8.1e-08  Score=82.57  Aligned_cols=170  Identities=16%  Similarity=0.182  Sum_probs=104.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC----CchHhhhCCCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ----PQLENALTGMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~----~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~----~d~~~a~~~aDiV   92 (258)
                      |||.|+||+|++|++++..|...|+    .+++..+|.....+....+........+..+...    ........+.|.|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            7999999999999999999988764    3578888865432211112221112233332211    1234567899999


Q ss_pred             EEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC----CCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN----PVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (258)
Q Consensus        93 Ii~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN----Pvd~~~~i~t~~~~~~~~~~~~kviG~t  166 (258)
                      +++|+.+....  ....+.+..|+.....+++.+.++...-+|..-|.    +.+..  -+    .+...+.|....|.+
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~--~~----~E~~~~~p~~~Y~~s  154 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSG--SW----TESSPLEPNSPYAAS  154 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSS--CB----CTTSCCCCCSHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCC--CC----CCCCCCCCCCHHHHH
Confidence            99986543221  22345678899999999999998876533332221    00000  00    011123444455666


Q ss_pred             eccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+....+...+++..+++...++ ..|+|.+
T Consensus       155 K~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  185 (322)
T d1r6da_         155 KAGSDLVARAYHRTYGLDVRITRCCNNYGPY  185 (322)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECEEECTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEeeeEECcC
Confidence            55566667777888899998898 5699976

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.7e-08  Score=84.06  Aligned_cols=163  Identities=13%  Similarity=0.060  Sum_probs=101.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      +||.|+||+|++|++++..|..+|.  +|+.+|.... ....  +.+......+.... ...++.++.++|+||++|+..
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~--~~~~~~~~~~d~~~-~~~~~~~~~~~d~VihlAa~~   76 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH--EVTVVDNFFTGRKRN--VEHWIGHENFELIN-HDVVEPLYIEVDQIYHLASPA   76 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCGGG--TGGGTTCTTEEEEE-CCTTSCCCCCCSEEEECCSCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCCcCCHHH--HHHhcCCCceEEEe-hHHHHHHHcCCCEEEECcccC
Confidence            5999999999999999999999887  8999986332 1111  11111111232222 223445678999999998753


Q ss_pred             CCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC----------CCCCcHHHHHHHHHHhCCCCCCcEEEEee
Q 025075          100 RKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN----------PVNSTVPIAAEVFKKAGTYDPKKLLGVTM  167 (258)
Q Consensus       100 ~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN----------Pvd~~~~i~t~~~~~~~~~~~~kviG~t~  167 (258)
                      ..+  .....+.+..|+.....+.+.+++...  .+|.+|-          |.+--      .......+.|....|.+.
T Consensus        77 ~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~--k~I~~SS~~vy~~~~~~~~~e~------~~~~~~~~~p~~~Y~~sK  148 (312)
T d2b69a1          77 SPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA--RLLLASTSEVYGDPEVHPQSED------YWGHVNPIGPRACYDEGK  148 (312)
T ss_dssp             SHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEGGGGBSCSSSSBCTT------CCCBCCSSSTTHHHHHHH
T ss_pred             CchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEEChheecCCCCCCCCcc------ccCCCCCCCCccHHHHHH
Confidence            211  123456678899999999999988764  3444321          21100      000001123444556665


Q ss_pred             ccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          168 LDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       168 lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      +....+....++..|++...++ ..|+|.+
T Consensus       149 ~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~  178 (312)
T d2b69a1         149 RVAETMCYAYMKQEGVEVRVARIFNTFGPR  178 (312)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHHhCCcEEEEEeeeEECCC
Confidence            5566677777788899988888 4599966

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=5.3e-08  Score=80.29  Aligned_cols=114  Identities=18%  Similarity=0.097  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++.+||.|+||+|++|++++..|..++.+.+|.++++++............  ..+.++....++.++++++|+||.++|
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~--~~~~D~~~~~~~~~~~~~~d~vi~~~~   89 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVN--QEVVDFEKLDDYASAFQGHDVGFCCLG   89 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCE--EEECCGGGGGGGGGGGSSCSEEEECCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceee--eeeeccccccccccccccccccccccc
Confidence            445689999999999999999998888777899999876311000001100  000011112356788999999999987


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi  134 (258)
                      ... ......++...|......+++...+.+.+-++.
T Consensus        90 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~  125 (232)
T d2bkaa1          90 TTR-GKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNL  125 (232)
T ss_dssp             CCH-HHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEE
T ss_pred             ccc-cccchhhhhhhcccccceeeecccccCcccccc
Confidence            532 122344566778888889999888776554443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=98.55  E-value=9.4e-08  Score=82.79  Aligned_cols=166  Identities=17%  Similarity=0.131  Sum_probs=95.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeC----CCchHhhhC--CCCEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG----QPQLENALT--GMDLV   92 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~--~aDiV   92 (258)
                      |||.|+||+|++|+.++..|+..|.  +|+++|+...  ......+.+... ..+..+.+    ...+.++++  ++|+|
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~l~~~~~~~~~d~V   77 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVIILDNLCNSKRSVLPVIERLGG-KHPTFVEGDIRNEALMTEILHDHAIDTV   77 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTTHHHHHHHHHT-SCCEEEECCTTCHHHHHHHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHhhcC-CCCEEEEeecCCHHHHHHHHhccCCCEE
Confidence            7999999999999999999999997  9999997432  111111111110 01221111    123455666  78999


Q ss_pred             EEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec------CCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS------NPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        93 Ii~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t------NPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      |++|+.+..+-  +...+.++.|+...+.+.+.+++++.+-+|...|      +|....    .   .......|....|
T Consensus        78 iHlAa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~----~---e~~~~~~p~~~Y~  150 (338)
T d1udca_          78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPY----V---ESFPTGTPQSPYG  150 (338)
T ss_dssp             EECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSB----C---TTSCCCCCSSHHH
T ss_pred             EECCCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEcccccccc----c---cccccCCCcchHH
Confidence            99987432110  1335678899999999999999987665544333      111100    0   0111122344445


Q ss_pred             EeeccHHHHHHHHHHH-hCCCCCcee-EEEEecC
Q 025075          165 VTMLDVVRANTFVAEV-LGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       165 ~t~lds~R~~~~la~~-l~v~~~~v~-~~v~G~h  196 (258)
                      .+.+...++....+++ .+.+..-++ ..++|.+
T Consensus       151 ~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~  184 (338)
T d1udca_         151 KSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAH  184 (338)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCC
T ss_pred             HHHhhhhHHHHHHHhhccCCeEEEEeeccEEecc
Confidence            5544444443333333 355555556 4588876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.44  E-value=1.9e-06  Score=67.20  Aligned_cols=96  Identities=17%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |+||+|||+ |.+|.+++..|...++..+|..||++++ ...+.+.....   ..   . +........++|+||++.- 
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~---~~---~-~~~~~~~~~~~dlIila~p-   71 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIID---EG---T-TSIAKVEDFSPDFVMLSSP-   71 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCS---EE---E-SCGGGGGGTCCSEEEECSC-
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcch---hh---h-hhhhhhhccccccccccCC-
Confidence            457999998 9999999999999887668999999864 22222221111   11   1 1222344568999999862 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEecCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP  139 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tNP  139 (258)
                                     ...+.++.+.+..+ .++.+++-+++.
T Consensus        72 ---------------~~~~~~vl~~l~~~~~~~~ii~d~~s~   98 (171)
T d2g5ca2          72 ---------------VRTFREIAKKLSYILSEDATVTDQGSV   98 (171)
T ss_dssp             ---------------HHHHHHHHHHHHHHSCTTCEEEECCSC
T ss_pred             ---------------chhhhhhhhhhhccccccccccccccc
Confidence                           12244555566655 467777666654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=3.7e-07  Score=79.70  Aligned_cols=168  Identities=14%  Similarity=0.040  Sum_probs=99.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcC--CCCCeEEEEeC----CCchHhhhCCC--C
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHM--DTGAVVRGFLG----QPQLENALTGM--D   90 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~--~~~~~v~~~~~----~~d~~~a~~~a--D   90 (258)
                      +|.|+||+|++|++++..|.+.|+  +|+.+|+....   .....+.+.  .....+..+.+    ..++++.++++  |
T Consensus         3 ~vLITGatGfiGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           3 VALITGVTGQDGSYLAEFLLEKGY--EVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            455999999999999999999997  99999985421   111111111  11123333221    12344556654  9


Q ss_pred             EEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhC-C-CcEEEEec------CCCCCcHHHHHHHHHHhCCCCCC
Q 025075           91 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLIS------NPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        91 iVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~-p-~a~viv~t------NPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      +|+.+|+....+  ..+....+..|+.....+++.+++++ . ...+|.+|      +|-+.   .++    +...+.|.
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~---~~~----E~~~~~P~  153 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEI---PQK----ETTPFYPR  153 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSS---SBC----TTSCCCCC
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCC---CcC----CCCCCCCC
Confidence            999998764322  23445567889999999999998876 2 24555444      33221   011    12223445


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCceeE-EEEecCCC
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAG  198 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g  198 (258)
                      ...|.+.+....+....++..+++..-++. .++|...+
T Consensus       154 ~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~  192 (357)
T d1db3a_         154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRG  192 (357)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSC
T ss_pred             ChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCC
Confidence            556666666666767777888888877773 48887533

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.39  E-value=5.1e-07  Score=70.35  Aligned_cols=64  Identities=17%  Similarity=0.210  Sum_probs=49.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||. |.+|+.+|..|+..|+  +|..||+++.+..  ++....    ...   ..+..+.++++|+||++.
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~--~V~~~d~~~~~~~--~~~~~~----~~~---~~~~~e~~~~~d~ii~~v   64 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGY--SLVVSDRNPEAIA--DVIAAG----AET---ASTAKAIAEQCDVIITML   64 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHH--HHHHTT----CEE---CSSHHHHHHHCSEEEECC
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCC--eEEEEeCCcchhH--HHHHhh----hhh---cccHHHHHhCCCeEEEEc
Confidence            79999998 9999999999999998  9999999764322  222221    111   245678999999999986

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.36  E-value=7.1e-07  Score=69.00  Aligned_cols=91  Identities=16%  Similarity=0.238  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||+|||+ |.+|++++..|...+.  ++.++|++.++..  ++.... .  +.   ...+.++++++||+||++.    
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~--~i~v~~r~~~~~~--~l~~~~-g--~~---~~~~~~~~~~~~dvIilav----   65 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPH--ELIISGSSLERSK--EIAEQL-A--LP---YAMSHQDLIDQVDLVILGI----   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSC--EEEEECSSHHHHH--HHHHHH-T--CC---BCSSHHHHHHTCSEEEECS----
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCC--eEEEEcChHHhHH--hhcccc-c--ee---eechhhhhhhccceeeeec----
Confidence            79999998 9999999999988876  9999998764322  221110 0  11   1246678899999999987    


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +|..            +.++.+   +..++..++.++....
T Consensus        66 kp~~------------~~~vl~---~l~~~~~iis~~agi~   91 (152)
T d2ahra2          66 KPQL------------FETVLK---PLHFKQPIISMAAGIS   91 (152)
T ss_dssp             CGGG------------HHHHHT---TSCCCSCEEECCTTCC
T ss_pred             chHh------------HHHHhh---hcccceeEeccccccc
Confidence            3321            233333   3356777776776665

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=98.36  E-value=4.3e-07  Score=77.49  Aligned_cols=111  Identities=22%  Similarity=0.213  Sum_probs=73.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HH-HHhcCCCCCeEEEEeC----CCchHhhhCCC--CEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TA-DISHMDTGAVVRGFLG----QPQLENALTGM--DLV   92 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~-dl~~~~~~~~v~~~~~----~~d~~~a~~~a--DiV   92 (258)
                      ||.|+||+|++|++++..|..+|+  +|+.+|.-...+.  .+ .+...   ..+..+.+    ..++.++++++  |+|
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~--~V~~id~~~~~~~~~~~~~~~~~---~~~~~i~~Di~~~~~l~~~~~~~~~d~V   76 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGI--DLIVFDNLSRKGATDNLHWLSSL---GNFEFVHGDIRNKNDVTRLITKYMPDSC   76 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSTTHHHHHHHHHTT---CCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhHHHHhhcc---CCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence            899999999999999999999998  8999985332111  11 12211   12222221    12355666654  999


Q ss_pred             EEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           93 IIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        93 Ii~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      |++|+......  .+-.+....|+...+.+++...+.+..-.++..|
T Consensus        77 ih~aa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS  123 (338)
T d1orra_          77 FHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSS  123 (338)
T ss_dssp             EECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             EeecccccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence            99986532211  1235667889999999999999987665555444

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.35  E-value=5.5e-07  Score=77.96  Aligned_cols=177  Identities=16%  Similarity=0.123  Sum_probs=100.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCEEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQLENALTGMDLVII   94 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDiVIi   94 (258)
                      +||||.|+||+|+||++++..|...|.--.++..|.....+....+... ....+..+.+    ...+.+++++.|.|++
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~-~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~   79 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAI-LGDRVELVVGDIADAELVDKLAAKADAIVH   79 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGG-CSSSEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHh-hcCCeEEEEccCCCHHHHHHHHhhhhhhhh
Confidence            4789999999999999999999887763356666643211111111111 1113332221    1245677899999999


Q ss_pred             cCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC-----CCCCcHHHH----HHHHHHhCCCCCCcEE
Q 025075           95 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN-----PVNSTVPIA----AEVFKKAGTYDPKKLL  163 (258)
Q Consensus        95 ~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN-----Pvd~~~~i~----t~~~~~~~~~~~~kvi  163 (258)
                      .|.......  .+..+.+..|+.....++....+.+..-+++..+.     |.....+.-    ...........|....
T Consensus        80 ~a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          80 YAAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTCEEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhhcccccchhhCcccceeeehHhHHhhhhhhccccccccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            886543221  12345678899999999999988875433322111     000000000    0000001112233445


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      |.+.+...++-....+..+++..-++. .|+|.+
T Consensus       160 ~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~  193 (346)
T d1oc2a_         160 SSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY  193 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCC
Confidence            666566666666667788888877774 588865

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=1.4e-06  Score=67.00  Aligned_cols=98  Identities=11%  Similarity=0.091  Sum_probs=62.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~--~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |.||+|+||+|.||+-+...|...+  ...+++++......+..........  .+.  . ..+ .++++++|++|++++
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~--~~~--~-~~~-~~~~~~~DivF~a~~   74 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTG--TLQ--D-AFD-LEALKALDIIVTCQG   74 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCC--BCE--E-TTC-HHHHHTCSEEEECSC
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCce--eee--c-ccc-hhhhhcCcEEEEecC
Confidence            4599999999999999997666543  2358888876554332222222111  111  1 123 357899999999973


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                                      ..+.+++++.+.+.+.++++  +.|-.+
T Consensus        75 ----------------~~~s~~~~~~~~~~g~~~~V--ID~Ss~  100 (146)
T d1t4ba1          75 ----------------GDYTNEIYPKLRESGWQGYW--IDAASS  100 (146)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCCEE--EECSST
T ss_pred             ----------------chHHHHhhHHHHhcCCCeec--ccCCcc
Confidence                            34467778888777666555  555555

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=98.32  E-value=3.5e-07  Score=80.17  Aligned_cols=184  Identities=15%  Similarity=0.110  Sum_probs=102.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-Cc---hHhhhC--CCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ---LENALT--GMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-~d---~~~a~~--~aDiVIi   94 (258)
                      |||.|+||+|++|++++..|+..++ ..+.++|.....+....+.+......+..+.+. .|   +.+.++  +.|+||.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~-~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vih   79 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQ-DTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMH   79 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCS-CEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            6999999999999999999988886 257788864422221222332222233332211 22   333344  5899999


Q ss_pred             cCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCC--------cEEEEecCC------CCCcH---HHHHHHHHHhC
Q 025075           95 PAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPN--------ATVNLISNP------VNSTV---PIAAEVFKKAG  155 (258)
Q Consensus        95 ~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~--------a~viv~tNP------vd~~~---~i~t~~~~~~~  155 (258)
                      +|+.+..+.  .+-.+.+..|+.....+.+.+.++...        ..++.+|.-      ...-.   ...........
T Consensus        80 lAa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~  159 (361)
T d1kewa_          80 LAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETT  159 (361)
T ss_dssp             CCSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTS
T ss_pred             CccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCC
Confidence            987432110  112446778888888888877765322        234444320      00000   00000000011


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecCCC-Cceeecc
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAG-VTILPLL  205 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g-~~~vp~~  205 (258)
                      ...|..+.|.+.+...++....++..+++...++ ..|+|.++. ++.+|.+
T Consensus       160 ~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~~~i~~~  211 (361)
T d1kewa_         160 AYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLV  211 (361)
T ss_dssp             CCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCTTSHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCcCcHHHHH
Confidence            1233445666666677777777888899988888 469998733 2344443

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.29  E-value=2e-06  Score=67.01  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=49.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+||++||. |.+|+.++..|.+.|+  +|..||++..+..  ++....   ...    ..++.++++.+|+|+++.
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~--~v~~~d~~~~~~~--~~~~~~---~~~----~~~~~e~~~~~diii~~v   65 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGY--LLNVFDLVQSAVD--GLVAAG---ASA----ARSARDAVQGADVVISML   65 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSSHHHHH--HHHHTT---CEE----CSSHHHHHTSCSEEEECC
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCC--eEEEEECchhhhh--hhhhhh---ccc----cchhhhhccccCeeeecc
Confidence            569999997 9999999999999998  9999998764322  333222   111    245678999999999986

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=6.7e-07  Score=77.01  Aligned_cols=166  Identities=14%  Similarity=0.040  Sum_probs=94.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCch-HhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQL-ENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~-~~a~~~aDiVIi~   95 (258)
                      |||.|+||+|++|++++..|+.+|.. +|+.+|+......  .+...   ..+..+.+    ..++ +.+.+++|+||++
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~-~V~~ld~~~~~~~--~~~~~---~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~   74 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAIS--RFLNH---PHFHFVEGDISIHSEWIEYHVKKCDVVLPL   74 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGG--GGTTC---TTEEEEECCTTTCSHHHHHHHHHCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCC-EEEEEeCCCcchh--hhccC---CCeEEEECccCChHHHHHHHHhCCCccccc
Confidence            69999999999999999988887753 7999998653111  11111   12332222    1122 3367899999999


Q ss_pred             CCCCCCCCC--chhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec-----CCCCCcHHHHHHHHH---HhCCCCCCcEEEE
Q 025075           96 AGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-----NPVNSTVPIAAEVFK---KAGTYDPKKLLGV  165 (258)
Q Consensus        96 ag~~~~~g~--~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t-----NPvd~~~~i~t~~~~---~~~~~~~~kviG~  165 (258)
                      |+....+..  .-...+..|+.....+++.+.+....-++ ..|     .+.+.   ...+...   ......|+...|.
T Consensus        75 a~~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~~~~~-~ss~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~Y~~  150 (342)
T d2blla1          75 VAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRIIF-PSTSEVYGMCSDK---YFDEDHSNLIVGPVNKPRWIYSV  150 (342)
T ss_dssp             BCCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCEEEE-ECCGGGGBTCCCS---SBCTTTCCCBCCCTTCGGGHHHH
T ss_pred             cccccccccccCCccccccccccccccccccccccccccc-ccccccccccccc---ccccccccccccccCCCcchhhh
Confidence            875432221  22356788999999999999887654332 221     11010   0000000   0000112233444


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      +.+...++....++..|++..-++. .+.|..
T Consensus       151 sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~  182 (342)
T d2blla1         151 SKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPR  182 (342)
T ss_dssp             HHHHHHHHHHHHHHHHCCCEEEEEECSEECSS
T ss_pred             cccchhhhhhhhhcccCceeEEeecccccccc
Confidence            4445556666667777777666663 366643

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=3e-06  Score=74.40  Aligned_cols=170  Identities=12%  Similarity=0.100  Sum_probs=97.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----------------hhHH----HHHhcCCCCCeEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----------------PGVT----ADISHMDTGAVVRGFLGQ   79 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----------------~g~~----~dl~~~~~~~~v~~~~~~   79 (258)
                      |||.|+||+|++|++++..|++.|+  +|+.+|.-..                 ....    ..+.+    ..+..+.+.
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~--~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~D   75 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNY--EVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG----KSIELYVGD   75 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC----CCCEEEESC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC--EEEEEecCCcccccccccccccccccchHHHHHHHHhhcC----CCcEEEEcc
Confidence            6999999999999999999999998  9999983110                 0000    01111    122222211


Q ss_pred             ----CchHhhhCC--CCEEEEcCCCCCCCC--Cc---hhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHH-H-
Q 025075           80 ----PQLENALTG--MDLVIIPAGVPRKPG--MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP-I-  146 (258)
Q Consensus        80 ----~d~~~a~~~--aDiVIi~ag~~~~~g--~~---r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~-i-  146 (258)
                          ..+.+++++  .|+|+++|+....+.  .+   -.+....|+.....+.+.+.+++.+..++..|.-...... . 
T Consensus        76 l~d~~~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~  155 (393)
T d1i24a_          76 ICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNID  155 (393)
T ss_dssp             TTSHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSC
T ss_pred             CCCHHHHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeeccccccccccccc
Confidence                123455654  499999987532111  11   2345678999999999999999988777666532210000 0 


Q ss_pred             HHHHHH----------HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          147 AAEVFK----------KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       147 ~t~~~~----------~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..+...          ......|....|.+.+....+....++..+++...++ ..++|.+
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~  216 (393)
T d1i24a_         156 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVK  216 (393)
T ss_dssp             BCSSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSC
T ss_pred             cccccccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCC
Confidence            000000          0000112223344444344555566677788877777 4588865

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.18  E-value=1.9e-06  Score=68.95  Aligned_cols=102  Identities=18%  Similarity=0.244  Sum_probs=62.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC--------------CCCeEEEEeCCCchHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--------------TGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~--------------~~~~v~~~~~~~d~~~a~   86 (258)
                      |||+|||. |+||.++|..++ .|+  +|+.||+++.+  ...|....              ......   .+.+...+.
T Consensus         1 MkI~ViGl-G~vGl~~a~~~a-~g~--~V~g~Din~~~--v~~l~~g~~p~~e~~l~~~~~~~~~~~~---~~~~~~~~~   71 (196)
T d1dlja2           1 MKIAVAGS-GYVGLSLGVLLS-LQN--EVTIVDILPSK--VDKINNGLSPIQDEYIEYYLKSKQLSIK---ATLDSKAAY   71 (196)
T ss_dssp             CEEEEECC-SHHHHHHHHHHT-TTS--EEEEECSCHHH--HHHHHTTCCSSCCHHHHHHHHHSCCCEE---EESCHHHHH
T ss_pred             CEEEEECC-ChhHHHHHHHHH-CCC--cEEEEECCHHH--HHHHhhcccccchhhHHHHhhhhhhhhh---ccchhhhhh
Confidence            79999997 999999997665 577  99999998641  11111110              111222   123456778


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      .++|+++++...|......-.     ....+....+.+....+..++++-
T Consensus        72 ~~~~ii~v~vpt~~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~iii~  116 (196)
T d1dlja2          72 KEAELVIIATPTNYNSRINYF-----DTQHVETVIKEVLSVNSHATLIIK  116 (196)
T ss_dssp             HHCSEEEECCCCCEETTTTEE-----CCHHHHHHHHHHHHHCSSCEEEEC
T ss_pred             hccccccccCCccccccCCCc-----ceeEEeehhhhhhhcccceeEEee
Confidence            999999999766543221111     123445555666666666665543

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=1.7e-06  Score=74.47  Aligned_cols=171  Identities=15%  Similarity=0.015  Sum_probs=105.5

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hh---HHHHHhcCCCCCeEEEEeC-CCc---hHhhhC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHMDTGAVVRGFLG-QPQ---LENALT   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g---~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~   87 (258)
                      +.++++|.|+||+|++|++++..|.+.|+  +|..+|+...  ..   ....+........+..+.+ ..|   ......
T Consensus        13 ~~~~k~iLVTG~tGfIGs~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~   90 (341)
T d1sb8a_          13 PAQPKVWLITGVAGFIGSNLLETLLKLDQ--KVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACA   90 (341)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHT
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccc
Confidence            34556899999999999999999999998  9999996432  11   1111111000112222211 112   334567


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC-----CCCcHHHHHHHHHHhCCCCCC
Q 025075           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-----VNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP-----vd~~~~i~t~~~~~~~~~~~~  160 (258)
                      +.|.|+.++....-+  ..+..+.+..|+.....+.+.+.+++...+|..-|..     -+.   -.+    +.....|.
T Consensus        91 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~---~~~----E~~~~~p~  163 (341)
T d1sb8a_          91 GVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGL---PKV----EDTIGKPL  163 (341)
T ss_dssp             TCSEEEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCS---SBC----TTCCCCCC
T ss_pred             cccccccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCC---Ccc----CCCCCCCC
Confidence            889988886533211  1233557788999999999999988766555544421     110   000    11123344


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ...|.+.+...++...+++..+++..-++ ..|+|.+
T Consensus       164 ~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~  200 (341)
T d1sb8a_         164 SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRR  200 (341)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTT
T ss_pred             CcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccC
Confidence            56666666677777788888899988888 4588876

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=98.14  E-value=1.1e-05  Score=61.89  Aligned_cols=111  Identities=12%  Similarity=0.147  Sum_probs=71.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~-~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      |||+||||+|++|+-+...|.... + ..++.++......++..++....  ..+.  . ..+ .+.++++|+||++.+ 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~--~~~~--~-~~~-~~~~~~~DvvF~alp-   73 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDA--GMLH--D-AFD-IESLKQLDAVITCQG-   73 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCC--CBCE--E-TTC-HHHHTTCSEEEECSC-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcc--eeee--c-ccc-hhhhccccEEEEecC-
Confidence            799999999999999997665432 1 34788776654333322111110  0111  1 123 356899999999963 


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeec
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML  168 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~l  168 (258)
                                     -...+++++.+.+.+.++++  +.|..|.             +++++-++++.-+
T Consensus        74 ---------------~~~s~~~~~~l~~~g~~~~V--IDlSsdf-------------R~~~dvpl~lPEi  113 (147)
T d1mb4a1          74 ---------------GSYTEKVYPALRQAGWKGYW--IDAASTL-------------RMDKEAIITLDPV  113 (147)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCSEE--EESSSTT-------------TTCTTEEEECHHH
T ss_pred             ---------------chHHHHHhHHHHHcCCceEE--EeCCccc-------------cccCCceEEeCCc
Confidence                           23457888888888877666  6777772             2677777787533

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=5e-06  Score=71.74  Aligned_cols=113  Identities=18%  Similarity=0.066  Sum_probs=71.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--h---hHHHHHhcCCCCCeEE-EEeCCCchHhhhC--CCCEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P---GVTADISHMDTGAVVR-GFLGQPQLENALT--GMDLVI   93 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~---g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~--~aDiVI   93 (258)
                      .|.|+||+|++|++++..|+..|+  +|+.+|....  .   .....+.+.... .+. ++....+++.+++  +.|+||
T Consensus         3 ~ILVTGatGfIG~~lv~~Ll~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~v~-~~~~Dl~d~~~l~~~~~~~~~d~Vi   79 (347)
T d1z45a2           3 IVLVTGGAGYIGSHTVVELIENGY--DCVVADNLSNSTYDSVARLEVLTKHHIP-FYEVDLCDRKGLEKVFKEYKIDSVI   79 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCSSCCTHHHHHHHHHHTSCCC-EEECCTTCHHHHHHHHHHSCCCEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCcC--eEEEEECCCCcchhHHHhHHhhcccCCe-EEEeecCCHHHHHHHHhccCCCEEE
Confidence            488999999999999999999997  8999986432  1   111122222111 111 0101112333444  789999


Q ss_pred             EcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ++|+.....  .+........|+.....+.+..++.....++...|
T Consensus        80 hlAa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS  125 (347)
T d1z45a2          80 HFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSS  125 (347)
T ss_dssp             ECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             EccccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecc
Confidence            998754211  12334566789999999999999887665555444

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.06  E-value=2e-05  Score=60.34  Aligned_cols=92  Identities=17%  Similarity=0.176  Sum_probs=58.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      |||++||+ |.+|++++..|...+. .+|.++|+++++.+.  +....   .+...   ++. ++++++|+||++.    
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~-~~i~v~~r~~~~~~~--l~~~~---~~~~~---~~~-~~v~~~Div~lav----   65 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGG-YRIYIANRGAEKRER--LEKEL---GVETS---ATL-PELHSDDVLILAV----   65 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCS-CEEEEECSSHHHHHH--HHHHT---CCEEE---SSC-CCCCTTSEEEECS----
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCC-CcEEEEeCChhHHHH--hhhhc---ccccc---ccc-ccccccceEEEec----
Confidence            79999998 9999999998776652 399999998653222  22211   12221   233 5688999999986    


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +|            ..+.++++.+..  .+.+++.+...+.
T Consensus        66 kP------------~~~~~v~~~l~~--~~~~viS~~ag~~   92 (152)
T d1yqga2          66 KP------------QDMEAACKNIRT--NGALVLSVAAGLS   92 (152)
T ss_dssp             CH------------HHHHHHHTTCCC--TTCEEEECCTTCC
T ss_pred             CH------------HHHHHhHHHHhh--cccEEeecccCCC
Confidence            22            113445555542  2456666666666

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=98.03  E-value=3.5e-05  Score=66.22  Aligned_cols=105  Identities=13%  Similarity=0.002  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCC-CCCeEEEE----eCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMD-TGAVVRGF----LGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~-~~~~v~~~----~~~~d~~~a~~~aDiVIi   94 (258)
                      .||.|+||+|++|++++..|+..|+  +|+...++..+. ....+.+.. .......+    ....++.++++++|.|+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~G~--~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~   89 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEHGY--KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAH   89 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhh
Confidence            4999999999999999999999887  787766654311 111111111 11111111    112345678999999999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC  128 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~  128 (258)
                      .++... ...+..+....|+.....+.+.+.++.
T Consensus        90 ~a~~~~-~~~~~~~~~~~nv~gt~~ll~~~~~~~  122 (342)
T d1y1pa1          90 IASVVS-FSNKYDEVVTPAIGGTLNALRAAAATP  122 (342)
T ss_dssp             CCCCCS-CCSCHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             hccccc-ccccccccccchhhhHHHHHHhhhccc
Confidence            886532 334445566779999999999998864

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=2.3e-06  Score=72.63  Aligned_cols=152  Identities=14%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh--CCCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVIi~ag~   98 (258)
                      +||.|+||+|++|++++..|.+.|.  ++++.|....    .|+.+..            .+.+.+  .+.|.|+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~--~vi~~~~~~~----~~~~~~~------------~~~~~~~~~~~d~v~~~a~~   64 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD--VELVLRTRDE----LNLLDSR------------AVHDFFASERIDQVYLAAAK   64 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT--EEEECCCTTT----CCTTCHH------------HHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC--EEEEecCchh----ccccCHH------------HHHHHHhhcCCCEEEEcchh
Confidence            4999999999999999999999887  5666665332    1221110            111222  357899998754


Q ss_pred             CCCC---CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC---------CCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075           99 PRKP---GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN---------PVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (258)
Q Consensus        99 ~~~~---g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN---------Pvd~~~~i~t~~~~~~~~~~~~kviG~t  166 (258)
                      ....   .....+.+..|+.....+++.+.+++-+-+|.+-|.         |.+--.      .......+++...|.+
T Consensus        65 ~~~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~------~~~~~~~~~~~~Y~~s  138 (315)
T d1e6ua_          65 VGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESE------LLQGTLEPTNEPYAIA  138 (315)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGG------TTSSCCCGGGHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCc------cccCCCCCCCCHHHHH
Confidence            3211   123455678899999999999988864433332221         111000      0000001122245556


Q ss_pred             eccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .+...++...+++..|++..-++ ..|+|++
T Consensus       139 K~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~  169 (315)
T d1e6ua_         139 KIAGIKLCESYNRQYGRDYRSVMPTNLYGPH  169 (315)
T ss_dssp             HHHHHHHHHHHHHHHCCEEEEEEECEEESTT
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEeeccEECCC
Confidence            56666776777788898888888 5699987

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.98  E-value=1.1e-05  Score=64.36  Aligned_cols=168  Identities=15%  Similarity=0.015  Sum_probs=88.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEE-EEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVR-GFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~-~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      .|++|.|+||+|++|++++..|++.|.--.++.+++++.  ...++... .. .+. ......++.++++++|.||++++
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~--~~~~~~~~-~~-~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQ--GKEKIGGE-AD-VFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHH--HHHHTTCC-TT-EEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHH--HHHhccCC-cE-EEEeeeccccccccccccceeeEEEEe
Confidence            467999999999999999999998886213444444332  22222221 11 111 01112245678899999999986


Q ss_pred             CCCCCC---------------CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           98 VPRKPG---------------MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        98 ~~~~~g---------------~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ....+.               .........|+.-.+.++..............-+...+.            . ..+...
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~-~~~~~~  144 (252)
T d2q46a1          78 AVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN------------P-DHPLNK  144 (252)
T ss_dssp             CCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC------------T-TCGGGG
T ss_pred             eccccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCC------------C-Cccccc
Confidence            432100               012233455666677777777666544333322211110            0 000111


Q ss_pred             EEE-eeccHHHHHHHHHHHhCCCCCcee-EEEEecCCCCceeecc
Q 025075          163 LGV-TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLL  205 (258)
Q Consensus       163 iG~-t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h~g~~~vp~~  205 (258)
                      ... .......+...+.+..+++..-++ ..++|.+.  +.++.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~ilRp~~v~g~~~--~~~~~~  187 (252)
T d2q46a1         145 LGNGNILVWKRKAEQYLADSGTPYTIIRAGGLLDKEG--GVRELL  187 (252)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSSSCEEEEEECEEECSCT--TSSCEE
T ss_pred             ccccchhhhhhhhhhhhhcccccceeecceEEECCCc--chhhhh
Confidence            111 122234455666677787777677 46888762  444443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.97  E-value=1.5e-05  Score=62.64  Aligned_cols=71  Identities=17%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC-CCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~-~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+|+|||. |.+|++++..|...|+  +|+.||+++++.+.  +..... ...........++.+.+.++|.++++.
T Consensus         3 ~nIg~IGl-G~MG~~mA~~L~~~G~--~V~v~dr~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           3 ADIALIGL-AVMGQNLILNMNDHGF--VVCAFNRTVSKVDD--FLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSTHHHHH--HHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CcEEEEeE-hHHHHHHHHHHHHCCC--eEEEEcCCHHHHHH--HHHhccccccccchhhhhhhhhhhcccceEEEec
Confidence            37999998 9999999999999998  89999998764332  222111 111111111235567889999999985

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.97  E-value=5.2e-06  Score=63.71  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |||+|||. |.+|+.++..|.+.|+  ++..+|.+....... .... .  .+.     .+..+++++||+||++.
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~--~v~~~~~~~~~~~~~-~~~~-~--~~~-----~~~~e~~~~~diIi~~v   64 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGV--EVVTSLEGRSPSTIE-RART-V--GVT-----ETSEEDVYSCPVVISAV   64 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTC--EEEECCTTCCHHHHH-HHHH-H--TCE-----ECCHHHHHTSSEEEECS
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCC--eEEEEcCchhHHHHH-hhhc-c--ccc-----ccHHHHHhhcCeEEEEe
Confidence            79999997 9999999999999998  899999876532211 1111 1  111     12368899999999986

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=2.8e-05  Score=67.71  Aligned_cols=172  Identities=14%  Similarity=0.110  Sum_probs=98.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC---------C-hhHH-HHHhcC--C----CCCeEEEEeC-CC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN---------T-PGVT-ADISHM--D----TGAVVRGFLG-QP   80 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~---------~-~g~~-~dl~~~--~----~~~~v~~~~~-~~   80 (258)
                      -|||.|+||+|++|++++..|++ .+.  +|+.+|.-.         . .... ..+...  .    ....+..+.+ -.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~--~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~   79 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNH--SVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVR   79 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCC--EEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTT
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCC--EEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECccc
Confidence            36999999999999999987764 676  899999411         0 1111 111111  1    1112222211 11


Q ss_pred             c---hHhhh---CCCCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC------CCCCcHHH
Q 025075           81 Q---LENAL---TGMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPI  146 (258)
Q Consensus        81 d---~~~a~---~~aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN------Pvd~~~~i  146 (258)
                      |   +++++   +++|+|+++|+....+.  .........|+.....+.....+.++..++...+-      +...   .
T Consensus        80 d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~---~  156 (383)
T d1gy8a_          80 NEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGS---V  156 (383)
T ss_dssp             CHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC------
T ss_pred             CHHHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccc---c
Confidence            2   33333   57899999987532211  12334567899999999999999887655443221      1100   0


Q ss_pred             HHH--HHHHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          147 AAE--VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       147 ~t~--~~~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      ..+  -........|....|.+.+...++.....+..|++...++ ..+.|..
T Consensus       157 ~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~  209 (383)
T d1gy8a_         157 STNAEPIDINAKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAH  209 (383)
T ss_dssp             --CCCCBCTTSCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCC
T ss_pred             cccccccccccCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccC
Confidence            000  0000011233455555666666777777888899888888 4688865

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.93  E-value=6e-06  Score=66.24  Aligned_cols=104  Identities=13%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCch-HhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL-ENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d~-~~a~~~aDiVIi~ag   97 (258)
                      ++||.|+||+|++|++++..|...+...+|....+++...      +    ..+..... -.++ .....+.|.||.++|
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~------~----~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE------H----PRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC------C----TTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh------c----ccccccccchhhhhhccccchheeeeeee
Confidence            3699999999999999999999888755666655443110      0    01110000 0011 222346899999987


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~v  133 (258)
                      ..........++...|......+++..++....-++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i  107 (212)
T d2a35a1          72 TTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYL  107 (212)
T ss_dssp             CCHHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEE
T ss_pred             eeccccccccccccchhhhhhhcccccccccccccc
Confidence            653333344566778888888888888876655443

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.91  E-value=3.5e-05  Score=65.09  Aligned_cols=167  Identities=14%  Similarity=0.020  Sum_probs=96.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCch---HhhhC--CCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---ENALT--GMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d~---~~a~~--~aDiVIi   94 (258)
                      +||.|+||+|++|++++..|..+|+  +|..+|+.........+.+......+..+.. -.|.   .+.+.  ..++++.
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~--~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~   78 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY--RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYN   78 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccc
Confidence            3899999999999999999999998  9999998653111111222221123332221 1122   22222  4667777


Q ss_pred             cCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC------CCCCcHHHHHHHHHHhCCCCCCcEEEEe
Q 025075           95 PAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVNSTVPIAAEVFKKAGTYDPKKLLGVT  166 (258)
Q Consensus        95 ~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN------Pvd~~~~i~t~~~~~~~~~~~~kviG~t  166 (258)
                      ++......  .....+.+..|+.....+++.+.++.+...++..|-      +.+.   ..    .+...+.|....|.+
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~---~~----~E~~~~~p~~~Y~~s  151 (321)
T d1rpna_          79 LAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAE---RQ----DENTPFYPRSPYGVA  151 (321)
T ss_dssp             CCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSS---SB----CTTSCCCCCSHHHHH
T ss_pred             ccccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCC---CC----CCCCCccccChhHHH
Confidence            66432211  123455678899999999999999987766665431      1110   00    011112233444445


Q ss_pred             eccHHHHHHHHHHHhCCCCCceeE-EEEecC
Q 025075          167 MLDVVRANTFVAEVLGLDPRDVDV-PVVGGH  196 (258)
Q Consensus       167 ~lds~R~~~~la~~l~v~~~~v~~-~v~G~h  196 (258)
                      .+...++.....+..+++...++. .+.|..
T Consensus       152 K~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~  182 (321)
T d1rpna_         152 KLYGHWITVNYRESFGLHASSGILFNHESPL  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHCCCEEEEEECCEECTT
T ss_pred             HHHHHHHHHHHHhhcCCcEEEEEEecccCCC
Confidence            555556666667777877666663 477754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.86  E-value=8.7e-05  Score=56.41  Aligned_cols=55  Identities=22%  Similarity=0.352  Sum_probs=43.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ..++||+|||+.|.+|++++..|.+.|+  +|..||++...                      +.++.++++|+++++.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~--~V~~~d~~~~~----------------------~~~~~~~~~~~v~~~~   61 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGY--PISILDREDWA----------------------VAESILANADVVIVSV   61 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTC--CEEEECTTCGG----------------------GHHHHHTTCSEEEECS
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCC--CcEeccccccc----------------------ccchhhhhcccccccc
Confidence            3456999999449999999999999998  99999986521                      1135678999999875

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.84  E-value=2.6e-05  Score=61.06  Aligned_cols=36  Identities=17%  Similarity=0.378  Sum_probs=32.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG   59 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g   59 (258)
                      |||+|||. |.+|++++..|+..|+  +|..||+++++.
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~--~V~~~dr~~~~~   37 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGF--KVAVFNRTYSKS   37 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSHHHH
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCC--eEEEEECCHHHH
Confidence            79999997 9999999999999998  899999987543

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=97.84  E-value=4.5e-05  Score=65.25  Aligned_cols=113  Identities=15%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeC-CCc---hHhhhC--CCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLG-QPQ---LENALT--GMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~-~~d---~~~a~~--~aDiVI   93 (258)
                      +||.|+||+|++|++++..|...|.  +|..+|++... ....+.....  ..+..+.+ -.|   +.++++  ..|+|+
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~--~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~   84 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGA--TVKGYSLTAPTVPSLFETARVA--DGMQSEIGDIRDQNKLLESIREFQPEIVF   84 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCSSSSCHHHHTTTT--TTSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCCCccHHHHhhhhcc--cCCeEEEeeccChHhhhhhhhhchhhhhh
Confidence            3999999999999999999999998  89999987641 1111111111  11222211 112   334444  458888


Q ss_pred             EcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .+++.+....  ..-.+....|+.....+.+.+.+.+....++..|
T Consensus        85 ~~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s  130 (356)
T d1rkxa_          85 HMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNIT  130 (356)
T ss_dssp             ECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             hhhccccccccccCCccccccccccchhhhhhhhcccccccccccc
Confidence            8876432110  1123456778899999999999887665555443

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.83  E-value=2.5e-05  Score=58.32  Aligned_cols=98  Identities=21%  Similarity=0.164  Sum_probs=60.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hHhh-hCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENA-LTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a-~~~aDiVIi~   95 (258)
                      |||.|+|+ |.+|+.++..|...|+  +++++|.|++....  +... ..  ...+.+ .+|   ++++ ++++|.++.+
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~--~v~vid~d~~~~~~--~~~~-~~--~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGH--DIVLIDIDKDICKK--ASAE-ID--ALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHH--HHHH-CS--SEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--CcceecCChhhhhh--hhhh-hh--hhhccCcccchhhhhhcChhhhhhhccc
Confidence            79999998 9999999999999987  99999998753222  2111 11  111211 122   2222 6799998887


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ...         |  ..|+.+    +...++++++-++..+.||..
T Consensus        73 t~~---------d--~~N~~~----~~~~k~~~~~~iI~~~~~~~~  103 (132)
T d1lssa_          73 TGK---------E--EVNLMS----SLLAKSYGINKTIARISEIEY  103 (132)
T ss_dssp             CSC---------H--HHHHHH----HHHHHHTTCCCEEEECSSTTH
T ss_pred             CCc---------H--HHHHHH----HHHHHHcCCceEEEEecCHHH
Confidence            421         1  345422    223445677766666677765

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=97.83  E-value=7.8e-06  Score=67.97  Aligned_cols=93  Identities=15%  Similarity=0.178  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~   98 (258)
                      |||.|+||+|++|++++..|...|   +++.+|..... ...|+.+            ..++++.++  +.|+||++|+.
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g---~~v~~~~~~~~-~~~Dl~~------------~~~~~~~i~~~~~D~Vih~Aa~   64 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVG---NLIALDVHSKE-FCGDFSN------------PKGVAETVRKLRPDVIVNAAAH   64 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTS---EEEEECTTCSS-SCCCTTC------------HHHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCC---CEEEEECCCcc-ccCcCCC------------HHHHHHHHHHcCCCEEEEeccc
Confidence            799999999999999999888777   56666665421 0011111            112345555  45999999975


Q ss_pred             CCC--CCCchhhHHHHhHHHHHHHHHHhhhhCC
Q 025075           99 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCP  129 (258)
Q Consensus        99 ~~~--~g~~r~d~~~~n~~i~~~i~~~i~~~~p  129 (258)
                      ...  ...........|......+.+...+.+.
T Consensus        65 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~   97 (298)
T d1n2sa_          65 TAVDKAESEPELAQLLNATSVEAIAKAANETGA   97 (298)
T ss_dssp             CCHHHHTTCHHHHHHHHTHHHHHHHHHHTTTTC
T ss_pred             ccccccccCccccccccccccccchhhhhcccc
Confidence            421  1223445667788888888888877654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.74  E-value=6.8e-05  Score=59.46  Aligned_cols=82  Identities=15%  Similarity=0.193  Sum_probs=56.4

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcC-CCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHM-DTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~-~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      .+.+.++|.|+||+|.+|..++..|++.|.  +|++.|++.++..  ...+... ......-+.....++++.+.++|+|
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDil   96 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA--EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFV   96 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc--chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCee
Confidence            355667999999999999999999999997  8999999875321  1112111 1111111222234567789999999


Q ss_pred             EEcCCCC
Q 025075           93 IIPAGVP   99 (258)
Q Consensus        93 Ii~ag~~   99 (258)
                      |.++|.+
T Consensus        97 in~Ag~g  103 (191)
T d1luaa1          97 FTAGAIG  103 (191)
T ss_dssp             EECCCTT
T ss_pred             eecCccc
Confidence            9998864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.74  E-value=1.9e-05  Score=65.24  Aligned_cols=90  Identities=21%  Similarity=0.208  Sum_probs=59.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEEEcCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV   98 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVIi~ag~   98 (258)
                      |||.|+||+|++|++++..|..+|+  +|+..|++.     .|+.+.            .++++.++  +.|+||.+++.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~--~Vi~~~r~~-----~D~~d~------------~~~~~~l~~~~~d~vih~a~~   62 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNV--EVIPTDVQD-----LDITNV------------LAVNKFFNEKKPNVVINCAAH   62 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSE--EEEEECTTT-----CCTTCH------------HHHHHHHHHHCCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCC--EEEEeechh-----ccCCCH------------HHHHHHHHHcCCCEEEeeccc
Confidence            7999999999999999999999998  899998754     222221            12234454  67999998864


Q ss_pred             CCCCC--CchhhHHHHhHHHHHHHHHHhhhhCC
Q 025075           99 PRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP  129 (258)
Q Consensus        99 ~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p  129 (258)
                      .....  .........|......+.........
T Consensus        63 ~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~   95 (281)
T d1vl0a_          63 TAVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA   95 (281)
T ss_dssp             CCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC
T ss_pred             cccccccccchhhcccccccccccccccccccc
Confidence            32111  12233445566666666666555443

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.72  E-value=8.6e-06  Score=69.46  Aligned_cols=173  Identities=12%  Similarity=-0.001  Sum_probs=90.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHH----HHHhcCCCCCeEEEEeC-CCc---hHhhh--C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT----ADISHMDTGAVVRGFLG-QPQ---LENAL--T   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~----~dl~~~~~~~~v~~~~~-~~d---~~~a~--~   87 (258)
                      +|+.|+||+|++|++++..|+.+|+  +|+.+|+...   ....    .+.... ....+....+ -.+   +...+  .
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Di~~~~~~~~~~~~~   78 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY--EVHGLIRRSSNFNTQRINHIYIDPHNV-NKALMKLHYADLTDASSLRRWIDVI   78 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTTTTC---------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC--EEEEEECCCcccchhhhhhhhhhhhhc-cccceEEEEccccCHHHHHHHHhhh
Confidence            4788999999999999999999998  9999997532   1110    011111 0112222211 112   22333  4


Q ss_pred             CCCEEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhC----CCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           88 GMDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCC----PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~----p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +.|+||.+|+......  ..-.+....|......+...+.+.+    ....++..+. +.....- .....+...+.|..
T Consensus        79 ~~D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss-~~~~~~~-~~~~~E~~~~~p~~  156 (339)
T d1n7ha_          79 KPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGS-SEMFGST-PPPQSETTPFHPRS  156 (339)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEE-GGGGTTS-CSSBCTTSCCCCCS
T ss_pred             ccchhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeeccc-ceecccC-CCCCCCCCCCCCcc
Confidence            6799999997542211  1223455666666666666555432    2223332221 1000000 00000111233455


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCceeE-EEEecCCC
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAG  198 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~~-~v~G~h~g  198 (258)
                      ..|.+.+.+.++-...++..+++...++. .|+|.+.+
T Consensus       157 ~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~  194 (339)
T d1n7ha_         157 PYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRG  194 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSC
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCC
Confidence            55666666666666677778888777774 48897644

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.72  E-value=4.6e-05  Score=56.67  Aligned_cols=68  Identities=13%  Similarity=0.136  Sum_probs=45.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC--CCchHhh-hCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG--QPQLENA-LTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~--~~d~~~a-~~~aDiVIi~a   96 (258)
                      |+.|+|+ |.+|+.++..|...|+  +++++|.|++..+  ++.+...  .+-.-..  ..-++++ +++||.||++.
T Consensus         2 ~~iIiG~-G~~G~~la~~L~~~g~--~vvvid~d~~~~~--~~~~~~~--~~~~gd~~~~~~l~~a~i~~a~~vi~~~   72 (134)
T d2hmva1           2 QFAVIGL-GRFGGSIVKELHRMGH--EVLAVDINEEKVN--AYASYAT--HAVIANATEENELLSLGIRNFEYVIVAI   72 (134)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC--CCEEEESCHHHHH--HTTTTCS--EEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHHHCCC--eEEEecCcHHHHH--HHHHhCC--cceeeecccchhhhccCCccccEEEEEc
Confidence            7899998 9999999999999998  8999999875322  2333221  1111011  1123333 78999988875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=4.1e-05  Score=65.60  Aligned_cols=110  Identities=18%  Similarity=0.098  Sum_probs=66.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-------hhHH-HHHhcCCCCCeEEEEeCC-Cc---hHhhhCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------PGVT-ADISHMDTGAVVRGFLGQ-PQ---LENALTG   88 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-------~g~~-~dl~~~~~~~~v~~~~~~-~d---~~~a~~~   88 (258)
                      .||.|+||+|++|++++..|+..|.  +|+.+|....       .... ..+.... ...+..+.+. .|   +++++.+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~--~V~~ld~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~l~~~~~~   79 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY--LPVVIDNFHNAFRGGGSLPESLRRVQELT-GRSVEFEEMDILDQGALQRLFKK   79 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--CEEEEECSSSSCBCSSSSBHHHHHHHHHH-TCCCEEEECCTTCHHHHHHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC--EEEEEECCCccccccccchHHHHHHHHhc-CCCcEEEEeeccccccccccccc
Confidence            4899999999999999999999887  8999985221       0011 1111100 1122222211 22   3445555


Q ss_pred             CC--EEEEcCCCCCCCC--CchhhHHHHhHHHHHHHHHHhhhhCCCcEE
Q 025075           89 MD--LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (258)
Q Consensus        89 aD--iVIi~ag~~~~~g--~~r~d~~~~n~~i~~~i~~~i~~~~p~a~v  133 (258)
                      .|  +++.+|+.+....  ....+.+..|+.....+...+++++.+-++
T Consensus        80 ~~~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i  128 (346)
T d1ek6a_          80 YSFMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLV  128 (346)
T ss_dssp             CCEEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cccccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCccccc
Confidence            55  5666776432110  123556788999999999999988766443

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=5.8e-05  Score=64.36  Aligned_cols=167  Identities=13%  Similarity=0.038  Sum_probs=96.1

Q ss_pred             CeE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHHHHHhcC---CCCCeEEEEeCC-Cc---hHhhh--C
Q 025075           21 FKV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM---DTGAVVRGFLGQ-PQ---LENAL--T   87 (258)
Q Consensus        21 ~KI-~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~~dl~~~---~~~~~v~~~~~~-~d---~~~a~--~   87 (258)
                      +|| .|+||+|++|++++..|..+|+  +|+.+|+...   .+....+...   .....+..+.+. .|   +..++  .
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~--~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~   78 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGY--EVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEV   78 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcC--EEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhc
Confidence            389 6999999999999999999998  9999998652   1111111111   111133333211 12   22333  3


Q ss_pred             CCCEEEEcCCCCCCC--CCchhhHHHHhHHHHHHHHHHhhhhCC-C-cEEEEec------CCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLIS------NPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~--g~~r~d~~~~n~~i~~~i~~~i~~~~p-~-a~viv~t------NPvd~~~~i~t~~~~~~~~~  157 (258)
                      +.++|+.+++.....  .....+....|+.-...+.+.+++++- + ..++.+|      +|-+.   -+    .+...+
T Consensus        79 ~~~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~---~~----~E~~~~  151 (347)
T d1t2aa_          79 KPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEI---PQ----KETTPF  151 (347)
T ss_dssp             CCSEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSS---SB----CTTSCC
T ss_pred             ccceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCC---CC----CCCCCC
Confidence            566788776543211  123455567888888899999988763 3 3455444      22110   00    112224


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCcee-EEEEecC
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH  196 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~-~~v~G~h  196 (258)
                      .|....|.+.+...++....++..+++...++ ..+.|..
T Consensus       152 ~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~  191 (347)
T d1t2aa_         152 YPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPR  191 (347)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCC
Confidence            45555666666666666666777787776666 3478864

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.65  E-value=3.4e-05  Score=60.85  Aligned_cols=75  Identities=17%  Similarity=0.163  Sum_probs=46.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      |+||+|+||+|.+|.-+...|...+.+ ||..+-.+...|+.++-.+........ . ...+.++..+++|+|+++.+
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~-ei~~l~s~~~aG~~i~~~~p~~~~~~~-~-~~~~~~~~~~~~dvvf~a~p   75 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEA-KITYLSSRTYAGKKLEEIFPSTLENSI-L-SEFDPEKVSKNCDVLFTALP   75 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTE-EEEEEECSTTTTSBHHHHCGGGCCCCB-C-BCCCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCc-eEEEeeccccCCCcccccCchhhcccc-c-cccCHhHhccccceEEEccc
Confidence            689999999999999999999887765 555553333333322222221111111 1 12345556679999999863

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.59  E-value=3e-05  Score=60.07  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |||+|||++|.+|.++|..|+..|+  +|++++++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~--~V~l~~R~~e   35 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGH--EIVVGSRREE   35 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            7999996569999999999999998  9999999875

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.57  E-value=3.6e-05  Score=60.95  Aligned_cols=78  Identities=14%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCC-CCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~-~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +.+++||+|+||+|.+|+-+..+|...+.+ ||..+-.+...|+...-.+.. ........  .....+.++++|+|+++
T Consensus         2 s~~kikVaIlGATGyvG~elirLL~~HP~~-ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           2 SGEEVRIAVLGASGYTGAEIVRLLANHPQF-RIKVMTADRKAGEQFGSVFPHLITQDLPNL--VAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             CSSCEEEEEESCSSHHHHHHHHHHTTCSSE-EEEEEECSTTTTSCHHHHCGGGTTSCCCCC--BCGGGCCGGGCSEEEEC
T ss_pred             CCCccEEEEECcccHHHHHHHHHHHhCCCc-eEEEEeccccCCCccccccccccccccccc--hhhhhhhhcccceeeec
Confidence            356789999999999999999999988765 666665444333322111111 10011101  11123557899999998


Q ss_pred             CC
Q 025075           96 AG   97 (258)
Q Consensus        96 ag   97 (258)
                      ..
T Consensus        79 lp   80 (183)
T d2cvoa1          79 LP   80 (183)
T ss_dssp             CS
T ss_pred             cc
Confidence            63

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=97.54  E-value=4.9e-05  Score=63.22  Aligned_cols=74  Identities=16%  Similarity=0.074  Sum_probs=50.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----hhHHH-HHhcCCCCCeEEEEeC----CCchHhhhCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTA-DISHMDTGAVVRGFLG----QPQLENALTG   88 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----~g~~~-dl~~~~~~~~v~~~~~----~~d~~~a~~~   88 (258)
                      +++||.|+||+|++|++++..|...|+  +|+.++++..     +.... .+.+.    .+..+.+    ..++.+++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~--~V~~~~R~~~~~~~~~~~~~~~~~~~----~v~~v~~d~~d~~~~~~~~~~   75 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGH--PTYVLFRPEVVSNIDKVQMLLYFKQL----GAKLIEASLDDHQRLVDALKQ   75 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCSCCSSCHHHHHHHHHHHTT----TCEEECCCSSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEECCCcccchhHHHHHhhhccC----CcEEEEeecccchhhhhhccC
Confidence            457999999999999999999999997  8888888653     11111 12221    1222211    1235677899


Q ss_pred             CCEEEEcCCC
Q 025075           89 MDLVIIPAGV   98 (258)
Q Consensus        89 aDiVIi~ag~   98 (258)
                      ++.++.+++.
T Consensus        76 ~~~~~~~~~~   85 (312)
T d1qyda_          76 VDVVISALAG   85 (312)
T ss_dssp             CSEEEECCCC
T ss_pred             cchhhhhhhh
Confidence            9999998753

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00029  Score=58.36  Aligned_cols=159  Identities=15%  Similarity=0.177  Sum_probs=90.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc----------hHhhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ----------LENALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d----------~~~a~~~   88 (258)
                      .+.|+||++.+|.+++..|++.|.  .|++.|+++++  ..+.++........+..+.. -+|          ..+.+..
T Consensus        12 v~lITGas~GIG~aiA~~la~~G~--~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g~   89 (257)
T d1xg5a_          12 LALVTGASGGIGAAVARALVQQGL--KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSG   89 (257)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            588999999999999999999998  89999998652  22233443322223332211 112          1223457


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      -|++|..||......   .+.   ...+..|    .-..+.+++.+++.. ..+.|++++-.....            ..
T Consensus        90 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~------------~~  157 (257)
T d1xg5a_          90 VDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHR------------VL  157 (257)
T ss_dssp             CSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTS------------CC
T ss_pred             CCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcC------------CC
Confidence            899999998643211   121   1233334    456677788777765 467888776443210            01


Q ss_pred             CCCc--EEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKK--LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~k--viG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |...  .++.+.-.-..|-+.+|.+|...+..|++.++.
T Consensus       158 p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~  196 (257)
T d1xg5a_         158 PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCIS  196 (257)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred             CCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEe
Confidence            1110  112221122346677788875556678766554

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.52  E-value=3.8e-05  Score=59.14  Aligned_cols=70  Identities=17%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC---CchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ---PQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~---~d~~~a~~~aDiVIi~a   96 (258)
                      +||.|||| |.+|.+++..|...|+  +|.++|++.++++  ++...... ........   ....+.+...|+++.+.
T Consensus         3 K~IliiGa-G~~G~~~a~~L~~~g~--~V~v~dr~~~~a~--~l~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           3 KSVLMLGS-GFVTRPTLDVLTDSGI--KVTVACRTLESAK--KLSAGVQH-STPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CEEEEECC-STTHHHHHHHHHTTTC--EEEEEESCHHHHH--HHHTTCTT-EEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECChHHHH--HHHhcccc-cccccccccchhhhHhhhhccceeEeec
Confidence            58999998 9999999999999998  8999999876433  33332211 11111111   23455678899888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.50  E-value=0.00014  Score=56.67  Aligned_cols=78  Identities=22%  Similarity=0.216  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH-HHHhcCCCCCeEEE-EeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~-~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ++-||.|||+ |.+|..-+..+...|-  ++..+|.+.+.-+. .+....    .+.. ......+++.+++||+||-++
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA--~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~aa  103 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGA--QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIGAV  103 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEECC
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCC--EEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEEee
Confidence            4679999998 9999998888877775  89999998752222 112111    1221 222335788999999999998


Q ss_pred             CCCCCCC
Q 025075           97 GVPRKPG  103 (258)
Q Consensus        97 g~~~~~g  103 (258)
                      -.|.++-
T Consensus       104 lipG~~a  110 (168)
T d1pjca1         104 LVPGRRA  110 (168)
T ss_dssp             CCTTSSC
T ss_pred             ecCCccc
Confidence            7765543

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=4.5e-05  Score=58.12  Aligned_cols=72  Identities=21%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++|||+|+||+|.+|+-+...|.+++ ..-+|.++......|+.....+    .......  .+ .+.+.++|+++++.+
T Consensus         1 q~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~----~~~~~~~--~~-~~~~~~~d~vf~a~p   73 (144)
T d2hjsa1           1 QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAE----SSLRVGD--VD-SFDFSSVGLAFFAAA   73 (144)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETT----EEEECEE--GG-GCCGGGCSEEEECSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeecc----ccchhcc--ch-hhhhccceEEEecCC
Confidence            35899999999999999999887543 2347888866554443321111    1222111  11 245789999999864

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=97.48  E-value=5.2e-05  Score=62.47  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=48.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---h-HHHHHhcCCCCCeEEEEeC----CCchHhhhCCCCE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G-VTADISHMDTGAVVRGFLG----QPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g-~~~dl~~~~~~~~v~~~~~----~~d~~~a~~~aDi   91 (258)
                      ++||.|+||+|++|++++..|...|+  +|..++++...   . ....+.+... ..+..+.+    ..+..++++++|.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~   79 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH--PTFLLVRESTASSNSEKAQLLESFKA-SGANIVHGSIDDHASLVEAVKNVDV   79 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC--CEEEECCCCCTTTTHHHHHHHHHHHT-TTCEEECCCTTCHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEECCCccccchhHHHHHHhhcc-CCcEEEEeecccchhhhhhhhhcee
Confidence            45999999999999999999999997  89999987631   1 1111111000 01111111    1234567889999


Q ss_pred             EEEcCC
Q 025075           92 VIIPAG   97 (258)
Q Consensus        92 VIi~ag   97 (258)
                      |+.+++
T Consensus        80 vi~~~~   85 (307)
T d1qyca_          80 VISTVG   85 (307)
T ss_dssp             EEECCC
T ss_pred             eeeccc
Confidence            998875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.47  E-value=0.00059  Score=53.03  Aligned_cols=83  Identities=18%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCchHh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQLEN   84 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~~~   84 (258)
                      |.+..+..-...+..+|.|+|+ |.++.++++.|...+  .+|.+++++.++++.  ..+...   ..+....  .+ ..
T Consensus         5 f~~~l~~~~~~~~~k~vlIlGa-GGaarai~~aL~~~~--~~i~I~nR~~~~a~~l~~~~~~~---~~~~~~~--~~-~~   75 (171)
T d1p77a1           5 LVTDLQRLNWLRPNQHVLILGA-GGATKGVLLPLLQAQ--QNIVLANRTFSKTKELAERFQPY---GNIQAVS--MD-SI   75 (171)
T ss_dssp             HHHHHHHTTCCCTTCEEEEECC-SHHHHTTHHHHHHTT--CEEEEEESSHHHHHHHHHHHGGG---SCEEEEE--GG-GC
T ss_pred             HHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHcccC--ceeeeccchHHHHHHHHHHHhhc---cccchhh--hc-cc
Confidence            5666654333445569999998 999999999988754  489999998754332  233221   1233222  11 23


Q ss_pred             hhCCCCEEEEcCCC
Q 025075           85 ALTGMDLVIIPAGV   98 (258)
Q Consensus        85 a~~~aDiVIi~ag~   98 (258)
                      .+.++|+||.|...
T Consensus        76 ~~~~~diiIN~tp~   89 (171)
T d1p77a1          76 PLQTYDLVINATSA   89 (171)
T ss_dssp             CCSCCSEEEECCCC
T ss_pred             cccccceeeecccc
Confidence            47899999999643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=97.45  E-value=0.0012  Score=56.17  Aligned_cols=104  Identities=14%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-Cc----hHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ----LENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-~d----~~~a~~~aDiVI   93 (258)
                      ++++|+|+||+|++|++++..|...|+  +|+.+-++........+....   .+..+.+. .|    +..+++++|.++
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~---~v~~~~gD~~d~~~~~~~a~~~~~~~~   76 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH--HVRAQVHSLKGLIAEELQAIP---NVTLFQGPLLNNVPLMDTLFEGAHLAF   76 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC--CEEEEESCSCSHHHHHHHTST---TEEEEESCCTTCHHHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC--eEEEEECCcchhhhhhhcccC---CCEEEEeeCCCcHHHHHHHhcCCceEE
Confidence            456899999999999999999999887  888887766433333332211   22222221 12    456789999988


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.....   .       ..+....+.+++...+.+-.-+++..|
T Consensus        77 ~~~~~~---~-------~~~~~~~~~~~~aa~~agv~~~v~~Ss  110 (350)
T d1xgka_          77 INTTSQ---A-------GDEIAIGKDLADAAKRAGTIQHYIYSS  110 (350)
T ss_dssp             ECCCST---T-------SCHHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             eecccc---c-------chhhhhhhHHHHHHHHhCCCceEEEee
Confidence            764211   1       123344455666666665333444333

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.43  E-value=0.00053  Score=52.75  Aligned_cols=76  Identities=18%  Similarity=0.252  Sum_probs=53.3

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      +..+..||.|||+ |.+|..++..|...|. .++.++.+...+++.  +.... .....  . -.++.+++.++|+||.+
T Consensus        20 ~~l~~~~ilviGa-G~~g~~v~~~L~~~g~-~~i~v~nRt~~ka~~--l~~~~-~~~~~--~-~~~~~~~l~~~Divi~a   91 (159)
T d1gpja2          20 GSLHDKTVLVVGA-GEMGKTVAKSLVDRGV-RAVLVANRTYERAVE--LARDL-GGEAV--R-FDELVDHLARSDVVVSA   91 (159)
T ss_dssp             SCCTTCEEEEESC-CHHHHHHHHHHHHHCC-SEEEEECSSHHHHHH--HHHHH-TCEEC--C-GGGHHHHHHTCSEEEEC
T ss_pred             CCcccCeEEEECC-CHHHHHHHHHHHhcCC-cEEEEEcCcHHHHHH--HHHhh-hcccc--c-chhHHHHhccCCEEEEe
Confidence            3455679999998 9999999999988774 589999887544332  22211 11211  1 24677889999999999


Q ss_pred             CCCC
Q 025075           96 AGVP   99 (258)
Q Consensus        96 ag~~   99 (258)
                      .+.+
T Consensus        92 tss~   95 (159)
T d1gpja2          92 TAAP   95 (159)
T ss_dssp             CSSS
T ss_pred             cCCC
Confidence            7654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.39  E-value=0.00094  Score=54.98  Aligned_cols=155  Identities=19%  Similarity=0.244  Sum_probs=87.1

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch----------HhhhC
Q 025075           22 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (258)
Q Consensus        22 KI-~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (258)
                      || .|+||++.+|..++..|++.|.  .|++.|+++++.  ...++.+...  .+..+. .-+|.          .+.+-
T Consensus         2 KValITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGF--AVAIADYNDATAKAVASEINQAGG--HAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            76 5679999999999999999997  899999987532  2233433221  111111 11121          12245


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|..||......   .+.   ...+..|+    ...+..++.+.+.+..+.+++++.....           . +.
T Consensus        78 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~-----------~-~~  145 (255)
T d1gega_          78 GFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGH-----------V-GN  145 (255)
T ss_dssp             CCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-----------S-CC
T ss_pred             CccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhc-----------c-cC
Confidence            7999999998754221   122   12344454    4556667777777777877777643220           0 01


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..+-+.+|.+++  +..|++-.+-
T Consensus       146 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  180 (255)
T d1gega_         146 PELAVYSSSKFAVRGLTQTAARDLA--PLGITVNGYC  180 (255)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccccchhCHHHHHhhHHHHHHHhh--hhCcEEEEEe
Confidence            1111112221122346677788874  5567655444

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.37  E-value=0.00054  Score=54.46  Aligned_cols=92  Identities=22%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|+.++..|..-|.  +|..||............       +.   ...++++.++.||+|+++....
T Consensus        49 gktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~-------~~---~~~~l~~ll~~sD~i~~~~plt  115 (193)
T d1mx3a1          49 GETLGIIGL-GRVGQAVALRAKAFGF--NVLFYDPYLSDGVERALG-------LQ---RVSTLQDLLFHSDCVTLHCGLN  115 (193)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCTTHHHHHT-------CE---ECSSHHHHHHHCSEEEECCCCC
T ss_pred             CceEEEecc-ccccccceeeeecccc--ceeeccCcccccchhhhc-------cc---cccchhhccccCCEEEEeeccc
Confidence            358999998 9999999999988777  999999865422221111       11   1246788999999999986321


Q ss_pred             -CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075          100 -RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus       100 -~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       ...+.       -|    +   +.+....|++++|+++=
T Consensus       116 ~~T~~l-------i~----~---~~l~~mk~~a~lIN~sR  141 (193)
T d1mx3a1         116 EHNHHL-------IN----D---FTVKQMRQGAFLVNTAR  141 (193)
T ss_dssp             TTCTTS-------BS----H---HHHTTSCTTEEEEECSC
T ss_pred             ccchhh-------hh----H---HHHhccCCCCeEEecCC
Confidence             11121       11    1   12344458899999974

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.37  E-value=0.00013  Score=50.93  Aligned_cols=71  Identities=18%  Similarity=0.241  Sum_probs=49.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      +||+|+|. |..|.+++..|.++|.  ++.++|.+.......++.+.   ..+.  .+..+ .+.+.+.|+||++-|+|.
T Consensus         6 K~v~ViGl-G~sG~s~a~~L~~~g~--~v~~~D~~~~~~~~~~~~~~---~~~~--~~~~~-~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1           6 KNVVIIGL-GLTGLSCVDFFLARGV--TPRVMDTRMTPPGLDKLPEA---VERH--TGSLN-DEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTC--CCEEEESSSSCTTGGGSCTT---SCEE--ESBCC-HHHHHHCSEEEECTTSCT
T ss_pred             CEEEEEeE-CHHHHHHHHHHHHCCC--EEEEeeCCcCchhHHHHhhc---ccee--ecccc-hhhhccCCEEEECCCCCC
Confidence            48999998 9999999999999987  89999986642221122221   1221  12222 456889999999988764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=0.0012  Score=54.20  Aligned_cols=106  Identities=8%  Similarity=0.040  Sum_probs=65.0

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc---hHhhhCCCCEEEEcCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LENALTGMDLVIIPAGVP   99 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d---~~~a~~~aDiVIi~ag~~   99 (258)
                      |.|+||+|++|++++..|+++|. .+|..+|.-........+.+.... .........+   ....+.++++|+.+|+..
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~-~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~aa~~   79 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLNIA-DYMDKEDFLIQIMAGEEFGDVEAIFHEGACS   79 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTC-CCEEEEECCSSGGGGHHHHTSCCS-EEEEHHHHHHHHHTTCCCSSCCEEEECCSCC
T ss_pred             EEEecCccHHHHHHHHHHHhCCC-CeEEEEECCCCcchhhcccccchh-hhccchHHHHHHhhhhcccchhhhhhhcccc
Confidence            78999999999999999999884 378888843321111122222111 1110000000   012346888999888765


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPN  130 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~  130 (258)
                      ..+..........|......+.+...+.+..
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~  110 (307)
T d1eq2a_          80 STTEWDGKYMMDNNYQYSKELLHYCLEREIP  110 (307)
T ss_dssp             CTTCCCHHHHHHHTHHHHHHHHHHHHHHTCC
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            5555555666677788888888887777654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=0.00055  Score=56.11  Aligned_cols=155  Identities=17%  Similarity=0.180  Sum_probs=85.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeCC--CchHhh---hCCCCEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLGQ--PQLENA---LTGMDLVI   93 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~~--~d~~~a---~~~aDiVI   93 (258)
                      +++.|+||++.+|..++..|+..|.  +|++.|+++++..  ..++....   .+. ...+  .+.+++   +...|++|
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~---~~~-~Dv~~~~~v~~~~~~~g~iDilV   79 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGA--KVVAVTRTNSDLVSLAKECPGIE---PVC-VDLGDWDATEKALGGIGPVDLLV   79 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEE-CCTTCHHHHHHHHTTCCCCSEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEE-EeCCCHHHHHHHHHHcCCCeEEE
Confidence            4788999999999999999999997  8999998764221  11222111   111 1111  112222   35789999


Q ss_pred             EcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           94 IPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        94 i~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ..||......   .+..   ..+..|+    .+.+...+.+.+....+.+|+++.....           . +.|..-.+
T Consensus        80 nnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~-----------~-~~~~~~~Y  147 (242)
T d1cyda_          80 NNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAH-----------V-TFPNLITY  147 (242)
T ss_dssp             ECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT-----------S-CCTTBHHH
T ss_pred             ECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhcc-----------c-cCCccccc
Confidence            9998754321   1222   2334443    3455666666555666777777643221           0 12211111


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      +.+.-.-..+-+.+|.+++  ++.|++-.+-.
T Consensus       148 ~asKaal~~lt~~lA~e~~--~~gIrvN~I~P  177 (242)
T d1cyda_         148 SSTKGAMTMLTKAMAMELG--PHKIRVNSVNP  177 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHhC--ccCeecccCCC
Confidence            2221122346677788874  56677655543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00062  Score=55.81  Aligned_cols=155  Identities=15%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEE-EEeCCCchH---hhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVR-GFLGQPQLE---NALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~-~~~~~~d~~---~a~~~aDiVIi   94 (258)
                      +++.|+||++.+|.+++..|++.|.  +|++.|+++++..  ..++....   .+. ++....+.+   +.+...|++|.
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~~~~~~---~~~~Dv~d~~~v~~~~~~~g~iDilVn   82 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGA--RVVAVSRTQADLDSLVRECPGIE---PVCVDLGDWEATERALGSVGPVDLLVN   82 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHSTTCE---EEECCTTCHHHHHHHHTTCCCCCEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHhcCCCe---EEEEeCCCHHHHHHHHHHhCCceEEEe
Confidence            4788999999999999999999997  8999999864221  12222111   111 010001112   23458899999


Q ss_pred             cCCCCCCCC---Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEE
Q 025075           95 PAGVPRKPG---MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG  164 (258)
Q Consensus        95 ~ag~~~~~g---~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG  164 (258)
                      .||......   .+..   ..+..|+.    +.+.+++.+.+....+.+++++.-...           . +.|..-.++
T Consensus        83 nAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~-----------~-~~~~~~~Y~  150 (244)
T d1pr9a_          83 NAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQ-----------R-AVTNHSVYC  150 (244)
T ss_dssp             CCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGT-----------S-CCTTBHHHH
T ss_pred             ccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeeccccccc-----------c-cccchhhhh
Confidence            998754221   1222   23444443    556677766655566777777643220           0 122211222


Q ss_pred             EeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          165 VTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       165 ~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .+.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       151 asKaal~~lt~~lA~el~--~~gIrvN~I~  178 (244)
T d1pr9a_         151 STKGALDMLTKVMALELG--PHKIRVNAVN  178 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             hhHHHHHHHHHHHHHHhC--CCcEEEEEEe
Confidence            221122456677888874  5667765554

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.30  E-value=0.00037  Score=54.84  Aligned_cols=88  Identities=22%  Similarity=0.217  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|||. |.+|..++..+..-|.  +|..||+....+        ..  .     ...++++.+++||+|+++..  
T Consensus        42 gk~vgIiG~-G~IG~~va~~l~~~g~--~v~~~d~~~~~~--------~~--~-----~~~~l~ell~~sDiv~~~~p--  101 (181)
T d1qp8a1          42 GEKVAVLGL-GEIGTRVGKILAALGA--QVRGFSRTPKEG--------PW--R-----FTNSLEEALREARAAVCALP--  101 (181)
T ss_dssp             TCEEEEESC-STHHHHHHHHHHHTTC--EEEEECSSCCCS--------SS--C-----CBSCSHHHHTTCSEEEECCC--
T ss_pred             CceEEEecc-ccccccceeeeecccc--cccccccccccc--------ce--e-----eeechhhhhhccchhhcccc--
Confidence            468999998 9999999999988777  999999865311        00  1     01356799999999999763  


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..+ +++ .++  |    .   +.+....|++++|+++=
T Consensus       102 l~~-~t~-~li--~----~---~~l~~mk~~ailIN~~R  129 (181)
T d1qp8a1         102 LNK-HTR-GLV--K----Y---QHLALMAEDAVFVNVGR  129 (181)
T ss_dssp             CST-TTT-TCB--C----H---HHHTTSCTTCEEEECSC
T ss_pred             ccc-ccc-ccc--c----c---ceeeeccccceEEeccc
Confidence            222 121 111  1    1   33444468899999874

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.29  E-value=0.00017  Score=56.57  Aligned_cols=74  Identities=18%  Similarity=0.280  Sum_probs=44.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC---CCChhHHHHHhcCC----CCCeEEEEeCCCchHhhhCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV---VNTPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~---~~~~g~~~dl~~~~----~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      |+||+|+||+|++|.-+...|...+.+ +|.-+-.   ....|+.....+..    ........   .+......++|++
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~-ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dvv   76 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHM-TITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM---SDVRDFSADVDVV   76 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTE-EEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEE---SCGGGTCTTCCEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCC-ceEeeEeecccccccccccccccccccccccccccc---hhhhhhhccccee
Confidence            789999999999999999999988765 4433321   11123222212211    11122221   2334557899999


Q ss_pred             EEcCC
Q 025075           93 IIPAG   97 (258)
Q Consensus        93 Ii~ag   97 (258)
                      +++.+
T Consensus        77 f~alp   81 (179)
T d2g17a1          77 FLATA   81 (179)
T ss_dssp             EECSC
T ss_pred             ecccc
Confidence            99863

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.25  E-value=0.0022  Score=52.64  Aligned_cols=157  Identities=16%  Similarity=0.068  Sum_probs=87.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEeC-CCc---h-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFLG-QPQ---L-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~~-~~d---~-------~~a~~   87 (258)
                      +.+.|+||++.+|..++..|+..|.  .|++.|++++..+  ..++...   ..+..+.. -+|   .       .+.+-
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGA--KVMITGRHSDVGEKAAKSVGTP---DQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCC---CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3677889999999999999999997  8999999765222  2223221   12222211 112   1       22345


Q ss_pred             CCCEEEEcCCCCCCCC---Cchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|..||......   .+..+   .+..|+    ...+..++.+.+....+.||+++.....           . +.
T Consensus        82 ~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~-----------~-~~  149 (251)
T d1zk4a1          82 PVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGF-----------V-GD  149 (251)
T ss_dssp             SCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGT-----------S-CC
T ss_pred             CceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeecccee-----------c-cC
Confidence            7899999998743221   22222   344443    4567777777776666787777643321           1 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..|-+.+|..+...+..|++-.+-
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~  186 (251)
T d1zk4a1         150 PSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVH  186 (251)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEe
Confidence            2211222221112335566676644456677755443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.22  E-value=0.00043  Score=54.95  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=61.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC-C
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV-P   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~-~   99 (258)
                      ++|+|||. |.+|+.++..+..-|.  ++..||..............     .    ...++++.++.||+|++.... +
T Consensus        48 ~tvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~~-----~----~~~~l~~ll~~sD~v~l~~plt~  115 (191)
T d1gdha1          48 KTLGIYGF-GSIGQALAKRAQGFDM--DIDYFDTHRASSSDEASYQA-----T----FHDSLDSLLSVSQFFSLNAPSTP  115 (191)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSCCCHHHHHHHTC-----E----ECSSHHHHHHHCSEEEECCCCCT
T ss_pred             cceEEeec-ccchHHHHHHHHhhcc--ccccccccccccchhhcccc-----c----ccCCHHHHHhhCCeEEecCCCCc
Confidence            68999998 9999999998887776  89999986542221111111     1    124678899999999997632 2


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC--CCC
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN--PVN  141 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN--Pvd  141 (258)
                      ...++     +  |    +   +.+....|++++||++=  -+|
T Consensus       116 ~T~~l-----i--~----~---~~l~~mk~~a~lIN~sRG~ivd  145 (191)
T d1gdha1         116 ETRYF-----F--N----K---ATIKSLPQGAIVVNTARGDLVD  145 (191)
T ss_dssp             TTTTC-----B--S----H---HHHTTSCTTEEEEECSCGGGBC
T ss_pred             hHhhe-----e--c----H---HHhhCcCCccEEEecCCccchh
Confidence            11121     1  1    1   12334458899999973  355

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=8.8e-05  Score=56.33  Aligned_cols=89  Identities=11%  Similarity=0.091  Sum_probs=49.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP  102 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~~~  102 (258)
                      |++||+ |.+|++++..|...+.  ...+|+++.++.+.  +.+.... .      ..+..++++.+|+||++..    +
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~--~~~v~~R~~~~~~~--l~~~~~~-~------~~~~~~~~~~~DiVil~v~----d   65 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYE--IGYILSRSIDRARN--LAEVYGG-K------AATLEKHPELNGVVFVIVP----D   65 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC------CCCEECSSHHHHHH--HHHHTCC-C------CCSSCCCCC---CEEECSC----T
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCC--EEEEEeCChhhhcc--hhhcccc-c------ccchhhhhccCcEEEEecc----c
Confidence            689998 9999999988765443  33578876553332  3332211 1      1123578999999999962    2


Q ss_pred             CCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075          103 GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus       103 g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..            +.++++.+.  .++.+++-.+++..
T Consensus        66 ~~------------i~~v~~~l~--~~~~ivi~~s~~~~   90 (153)
T d2i76a2          66 RY------------IKTVANHLN--LGDAVLVHCSGFLS   90 (153)
T ss_dssp             TT------------HHHHHTTTC--CSSCCEEECCSSSC
T ss_pred             hh------------hhHHHhhhc--ccceeeeecccchh
Confidence            11            234554443  25667777776554

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.20  E-value=0.0006  Score=54.37  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .++|+|||. |.+|+.++..|..-|.  +|..||........   .+. .  .      ..++++.++.||+|+++.
T Consensus        43 gk~vgIiG~-G~IG~~va~~l~~fg~--~V~~~d~~~~~~~~---~~~-~--~------~~~l~~~l~~sDii~~~~  104 (197)
T d1j4aa1          43 DQVVGVVGT-GHIGQVFMQIMEGFGA--KVITYDIFRNPELE---KKG-Y--Y------VDSLDDLYKQADVISLHV  104 (197)
T ss_dssp             GSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCHHHH---HTT-C--B------CSCHHHHHHHCSEEEECS
T ss_pred             CCeEEEecc-cccchhHHHhHhhhcc--cccccCcccccccc---cce-e--e------eccccccccccccccccC
Confidence            368999998 9999999999988777  89999986542111   111 1  1      135788999999999986

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00084  Score=52.47  Aligned_cols=90  Identities=20%  Similarity=0.170  Sum_probs=57.1

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcC---CCCCeEEEEeC--CC
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHM---DTGAVVRGFLG--QP   80 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~---~~~~~v~~~~~--~~   80 (258)
                      |.|..+..--.-+..+|.|+|+ |..+.++++.|...+. .+|.+++++.+.. ...++.+.   .+...+.....  ..
T Consensus         5 f~~~l~~~~~~l~~k~vlIlGa-GGaarai~~al~~~g~-~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~   82 (182)
T d1vi2a1           5 HIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQ   82 (182)
T ss_dssp             HHHHHHHTTCCCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHH
T ss_pred             HHHHHHHcCCCcCCCEEEEECC-cHHHHHHHHHHhhcCC-ceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccccc
Confidence            6676654432445569999998 9999999999998874 6999999987522 22222211   11222222211  12


Q ss_pred             chHhhhCCCCEEEEcCCC
Q 025075           81 QLENALTGMDLVIIPAGV   98 (258)
Q Consensus        81 d~~~a~~~aDiVIi~ag~   98 (258)
                      ++.+.+.++|+||.+...
T Consensus        83 ~~~~~~~~~diiIN~Tp~  100 (182)
T d1vi2a1          83 AFAEALASADILTNGTKV  100 (182)
T ss_dssp             HHHHHHHTCSEEEECSST
T ss_pred             chhhhhcccceeccccCC
Confidence            345667899999998643

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.00075  Score=53.11  Aligned_cols=92  Identities=23%  Similarity=0.362  Sum_probs=60.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++++|+|. |.+|+.++..+..-|.  +|..||.........+..       +.    ..++++.++.||+|+++...
T Consensus        43 ~~k~vgiiG~-G~IG~~va~~~~~fg~--~v~~~d~~~~~~~~~~~~-------~~----~~~l~ell~~sDiv~~~~Pl  108 (184)
T d1ygya1          43 FGKTVGVVGL-GRIGQLVAQRIAAFGA--YVVAYDPYVSPARAAQLG-------IE----LLSLDDLLARADFISVHLPK  108 (184)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHTTTC--EEEEECTTSCHHHHHHHT-------CE----ECCHHHHHHHCSEEEECCCC
T ss_pred             cceeeeeccc-cchhHHHHHHhhhccc--eEEeecCCCChhHHhhcC-------ce----eccHHHHHhhCCEEEEcCCC
Confidence            3468999998 9999999998887666  899999865433322221       11    12567899999999998632


Q ss_pred             -CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           99 -PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        99 -~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                       +...++     +  |.       +.+....|++++|+++=
T Consensus       109 t~~T~~l-----i--n~-------~~l~~mk~~a~lIN~sR  135 (184)
T d1ygya1         109 TPETAGL-----I--DK-------EALAKTKPGVIIVNAAR  135 (184)
T ss_dssp             STTTTTC-----B--CH-------HHHTTSCTTEEEEECSC
T ss_pred             Cchhhhh-----h--hH-------HHHhhhCCCceEEEecc
Confidence             111121     1  11       22344458999999974

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.11  E-value=0.0031  Score=49.50  Aligned_cols=94  Identities=17%  Similarity=0.166  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ..++|+|+|. |.+|..++..|..-+.  +|..||.... .....+..       ..   ...++++.+++||+|++...
T Consensus        43 ~~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~~~~~~~-------~~---~~~~l~~~l~~sD~v~~~~p  109 (188)
T d2naca1          43 EAMHVGTVAA-GRIGLAVLRRLAPFDV--HLHYTDRHRLPESVEKELN-------LT---WHATREDMYPVCDVVTLNCP  109 (188)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHGGGTC--EEEEECSSCCCHHHHHHHT-------CE---ECSSHHHHGGGCSEEEECSC
T ss_pred             cccceeeccc-cccchhhhhhhhccCc--eEEEEeecccccccccccc-------cc---ccCCHHHHHHhccchhhccc
Confidence            3469999998 9999999999987776  8999998653 21211111       11   12467889999999999863


Q ss_pred             CCC-CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           98 VPR-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        98 ~~~-~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      ... ..++     +  |    +   +.+....+++++||++-.
T Consensus       110 lt~~T~~l-----i--~----~---~~l~~mk~ga~lIN~aRG  138 (188)
T d2naca1         110 LHPETEHM-----I--N----D---ETLKLFKRGAYIVNTARG  138 (188)
T ss_dssp             CCTTTTTC-----B--S----H---HHHTTSCTTEEEEECSCG
T ss_pred             ccccchhh-----h--H----H---HHHHhCCCCCEEEecCch
Confidence            221 1111     1  1    1   223344578899998743

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0017  Score=49.77  Aligned_cols=135  Identities=15%  Similarity=0.209  Sum_probs=73.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..+..+|.|+|+ |.+|...+..+...|.  +++..|.++++. .+.++.   .. .+-............++.|++|.+
T Consensus        28 ~~~G~~VlI~Ga-G~vG~~a~qlak~~Ga--~~i~~~~~~~~~~~a~~lG---ad-~~i~~~~~~~~~~~~~~~D~vid~  100 (168)
T d1uufa2          28 AGPGKKVGVVGI-GGLGHMGIKLAHAMGA--HVVAFTTSEAKREAAKALG---AD-EVVNSRNADEMAAHLKSFDFILNT  100 (168)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHT---CS-EEEETTCHHHHHTTTTCEEEEEEC
T ss_pred             CCCCCEEEEecc-chHHHHHHHHhhcccc--cchhhccchhHHHHHhccC---Cc-EEEECchhhHHHHhcCCCceeeee
Confidence            334458999997 9999999888888886  666788766532 222232   11 111111111122334689999999


Q ss_pred             CCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE---eeccHHH
Q 025075           96 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVVR  172 (258)
Q Consensus        96 ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~---t~lds~R  172 (258)
                      .|.+..                  +-..+.-..|.+.++.++-|.+....+-...+.    +...+++|.   +.-|..+
T Consensus       101 ~g~~~~------------------~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~----~k~~~i~Gs~~~~~~d~~e  158 (168)
T d1uufa2         101 VAAPHN------------------LDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLI----MKRRAIAGSMIGGIPETQE  158 (168)
T ss_dssp             CSSCCC------------------HHHHHTTEEEEEEEEECCCC-------CHHHHH----TTTCEEEECCSCCHHHHHH
T ss_pred             eecchh------------------HHHHHHHHhcCCEEEEeccCCCCcccccHHHHH----HCCcEEEEEeecCHHHHHH
Confidence            874321                  112234445888988887665432211111111    234578887   3455555


Q ss_pred             HHHHHHHH
Q 025075          173 ANTFVAEV  180 (258)
Q Consensus       173 ~~~~la~~  180 (258)
                      +-.+++++
T Consensus       159 ~l~l~a~~  166 (168)
T d1uufa2         159 MLDFCAEH  166 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            55555553

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0043  Score=50.80  Aligned_cols=113  Identities=14%  Similarity=0.177  Sum_probs=66.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC--C--Cch-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG--Q--PQL-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~--~--~d~-------~~a~~   87 (258)
                      +.+.|+||++.+|.+++..|++.|.  .|++.|+++++  ....++.+.. ...+..+..  +  .+.       .+.+-
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGC--SVVVASRNLEEASEAAQKLTEKY-GVETMAFRCDVSNYEEVKKLLEAVKEKFG   82 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHH-CCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4788999999999999999999997  89999998652  1222332211 111111110  1  111       12235


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEec
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ..|++|..||......   .+..   ..+..|+    .+.+.+++.+++.. .+.+|+++
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Ii~i~  141 (251)
T d1vl8a_          83 KLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESD-NPSIINIG  141 (251)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCS-SCEEEEEC
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccc-cccccccc
Confidence            7999999999754322   1222   2334444    45566677666544 44555554

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.04  E-value=0.0038  Score=51.45  Aligned_cols=155  Identities=15%  Similarity=0.136  Sum_probs=87.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-h--hHHHHHhcCCCCCeEEEEe--CC--CchHh-------hhC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFL--GQ--PQLEN-------ALT   87 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~--g~~~dl~~~~~~~~v~~~~--~~--~d~~~-------a~~   87 (258)
                      .+.|+||++.+|.+++..|+..|.  +|++.|++.+ .  ....++....  ..+..+.  .+  .+.++       .+.
T Consensus         9 ~alITGas~GIG~aia~~la~~G~--~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   84 (261)
T d1geea_           9 VVVITGSSTGLGKSMAIRFATEKA--KVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            677889999999999999999997  8999998764 1  1222333221  1222111  11  11222       234


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .-|++|..||......   .+..   ..+..|    ....+.+++.+.+....+.|+++|.....           . +.
T Consensus        85 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~-----------~-~~  152 (261)
T d1geea_          85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEK-----------I-PW  152 (261)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGT-----------S-CC
T ss_pred             CCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhc-----------c-cC
Confidence            7899999998754221   1222   234444    44567778888777666767766643321           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       153 ~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~I~  187 (261)
T d1geea_         153 PLFVHYAASKGGMKLMTETLALEYA--PKGIRVNNIG  187 (261)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             ccccccccCCccchhhHHHHHHHhh--hhCcEEEEEe
Confidence            2211222222223456677888874  5567655554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.04  E-value=0.013  Score=44.35  Aligned_cols=101  Identities=15%  Similarity=0.067  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchH---hhh-----C
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLE---NAL-----T   87 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~---~a~-----~   87 (258)
                      ..+.-+|.|+|+ |.+|...+..+...|.  +|+.+|.++.+- .+.++..   ...+.......+..   +.+     .
T Consensus        24 ~~~g~~vlV~G~-G~vG~~~~~~ak~~Ga--~vi~v~~~~~r~~~a~~~ga---~~~~~~~~~~~~~~~~~~~~~~~~g~   97 (170)
T d1e3ja2          24 VQLGTTVLVIGA-GPIGLVSVLAAKAYGA--FVVCTARSPRRLEVAKNCGA---DVTLVVDPAKEEESSIIERIRSAIGD   97 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTC---SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred             CCCCCEEEEEcc-cccchhhHhhHhhhcc--cccccchHHHHHHHHHHcCC---cEEEeccccccccchhhhhhhccccc
Confidence            344458999997 9999999988888885  899999976532 2223221   11111001111211   112     4


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ++|+||-++|.+               ..   +-..++-..|.+.+++++.|.+
T Consensus        98 g~D~vid~~g~~---------------~~---~~~a~~~~~~~G~iv~~G~~~~  133 (170)
T d1e3ja2          98 LPNVTIDCSGNE---------------KC---ITIGINITRTGGTLMLVGMGSQ  133 (170)
T ss_dssp             CCSEEEECSCCH---------------HH---HHHHHHHSCTTCEEEECSCCSS
T ss_pred             CCceeeecCCCh---------------HH---HHHHHHHHhcCCceEEEecCCC
Confidence            699999998632               11   2222333458899998877644

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.01  E-value=0.00049  Score=54.94  Aligned_cols=90  Identities=22%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR  100 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~~  100 (258)
                      ++|+|||. |.+|+.++..|..-|.  +|..||.....+.     .    .... .   .++++.++.||+|++..-.  
T Consensus        46 ktvgIiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~-----~----~~~~-~---~~l~~l~~~~D~v~~~~pl--  107 (199)
T d1dxya1          46 QTVGVMGT-GHIGQVAIKLFKGFGA--KVIAYDPYPMKGD-----H----PDFD-Y---VSLEDLFKQSDVIDLHVPG--  107 (199)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCSSC-----C----TTCE-E---CCHHHHHHHCSEEEECCCC--
T ss_pred             eeeeeeec-ccccccccccccccce--eeeccCCccchhh-----h----cchh-H---HHHHHHHHhcccceeeecc--
Confidence            58999998 9999999999988777  9999998543211     0    0111 1   2577889999999998622  


Q ss_pred             CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075          101 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus       101 ~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      .+ .++ .++  |    ++.   +.+..+++++|+++=.
T Consensus       108 t~-~T~-~li--~----~~~---l~~mk~~a~lIN~aRG  135 (199)
T d1dxya1         108 IE-QNT-HII--N----EAA---FNLMKPGAIVINTARP  135 (199)
T ss_dssp             CG-GGT-TSB--C----HHH---HHHSCTTEEEEECSCT
T ss_pred             cc-ccc-ccc--c----HHH---hhccCCceEEEecccH
Confidence            11 111 111  1    222   3334588999999743

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.0015  Score=53.03  Aligned_cols=110  Identities=16%  Similarity=0.148  Sum_probs=67.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCC---chHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQP---QLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~---d~~~a~~~aDiVIi~   95 (258)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|++++...  +..+.     ......+.   ...+.+...|++|..
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga--~V~~~~r~~~~l~--~~~~~-----~~~~Dv~~~~~~~~~~~g~iD~lVnn   73 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA--EVTICARNEELLK--RSGHR-----YVVCDLRKDLDLLFEKVKEVDILVLN   73 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHH--HTCSE-----EEECCTTTCHHHHHHHSCCCSEEEEC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHH--hcCCc-----EEEcchHHHHHHHHHHhCCCcEEEec
Confidence            345799999999999999999999997  8999999753211  11111     11111112   234556789999999


Q ss_pred             CCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           96 AGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        96 ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ||.+....   .+..   +.+..|+    .+.+.+.+.+++.. .+.+++++.
T Consensus        74 AG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~-~G~ii~i~S  125 (234)
T d1o5ia_          74 AGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKG-WGRIVAITS  125 (234)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             ccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccc-ccccccccc
Confidence            99764322   1222   2233443    35666777776654 455555543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0012  Score=54.36  Aligned_cols=152  Identities=17%  Similarity=0.163  Sum_probs=84.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEE-EEeCCCch-------HhhhCCCCE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVR-GFLGQPQL-------ENALTGMDL   91 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~-~~~~~~d~-------~~a~~~aDi   91 (258)
                      .+.|+||++.+|.+++..|+..|.  +|++.|++++..+.  .++....   .+. ++....+.       .+.+-..|+
T Consensus         8 ~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~---~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           8 VVVVTGGGRGIGAGIVRAFVNSGA--RVVICDKDESGGRALEQELPGAV---FILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHCTTEE---EEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhcCCCe---EEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            688999999999999999999997  89999998653222  1222111   000 00000111       223457899


Q ss_pred             EEEcCCCCCCCC----Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           92 VIIPAGVPRKPG----MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        92 VIi~ag~~~~~g----~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      +|..||....++    .+..   ..+..|    ..+.+...+.+++.  .+.+|+++....           ..+ .|..
T Consensus        83 lVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~--~G~Ii~isS~~~-----------~~~-~~~~  148 (250)
T d1ydea1          83 VVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKS--QGNVINISSLVG-----------AIG-QAQA  148 (250)
T ss_dssp             EEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEECCHHH-----------HHC-CTTC
T ss_pred             EEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhC--CCCCcccccccc-----------ccc-ccCc
Confidence            999998643322    1222   223444    34567777777654  367777764221           111 2322


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      -.++.+.-.-..|-+.+|++++  +..|++-.+-
T Consensus       149 ~~Y~asKaal~~lt~~lA~e~a--~~gIrVN~I~  180 (250)
T d1ydea1         149 VPYVATKGAVTAMTKALALDES--PYGVRVNCIS  180 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             chhHHHHhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            2233332223456777888874  5556654444

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.95  E-value=0.0049  Score=50.52  Aligned_cols=156  Identities=15%  Similarity=0.185  Sum_probs=86.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEE-EEeCCCchH-------hhhCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVR-GFLGQPQLE-------NALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~-~~~~~~d~~-------~a~~~aD   90 (258)
                      +++.|+||++.+|..++..|+..|.  +|++.|++.++  ....++.....  .+. ++....+.+       +.+-..|
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~Dvt~~~~v~~~~~~~~~~~g~iD   81 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGA--RVAIADINLEAARATAAEIGPAAC--AIALDVTDQASIDRCVAELLDRWGSID   81 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTE--EEEEEESCHHHHHHHHHHHCTTEE--EEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCceE--EEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            3678889999999999999999997  89999998652  22233321110  000 000011111       2234789


Q ss_pred             EEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           91 LVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        91 iVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      ++|..||......   .+.   ...+..|+    ...+.+++.+.+....+.|++++.....           . +.|..
T Consensus        82 ilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~-----------~-~~~~~  149 (256)
T d1k2wa_          82 ILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGR-----------R-GEALV  149 (256)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGT-----------S-CCTTC
T ss_pred             EEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhc-----------c-ccccc
Confidence            9999998753221   122   22345554    4556667776666666788877643321           0 12211


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      -.++.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       150 ~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  181 (256)
T d1k2wa_         150 GVYCATKAAVISLTQSAGLNLI--RHGINVNAIA  181 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cchhhhhhHHHHHHHHHHHHhc--ccCeEEEEEe
Confidence            1222221122346677888875  5567654443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00072  Score=53.05  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .++.||+|||| |..|.+.|..|+++|+  ++.|||....
T Consensus        41 ~~~k~V~IIGa-GPAGL~AA~~la~~G~--~Vtl~E~~~~   77 (179)
T d1ps9a3          41 VQKKNLAVVGA-GPAGLAFAINAAARGH--QVTLFDAHSE   77 (179)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSS
T ss_pred             CCCcEEEEECc-cHHHHHHHHHHHhhcc--ceEEEeccCc
Confidence            34579999998 9999999999999998  9999998763

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.91  E-value=0.0064  Score=49.90  Aligned_cols=155  Identities=14%  Similarity=0.193  Sum_probs=86.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---h-------HhhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---L-------ENALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~-------~~a~~~   88 (258)
                      .+.|+||++.+|..++..|+..|.  .|++.|++++.  ....++.....  .+..+.. -+|   .       .+.+-.
T Consensus         7 ~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           7 VCLVTGAGGNIGLATALRLAEEGT--AIALLDMNREALEKAEASVREKGV--EARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTS--CEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            678889999999999999999997  89999998752  22233433221  2221111 111   1       223457


Q ss_pred             CCEEEEcCCCCCCCC----Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           89 MDLVIIPAGVPRKPG----MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        89 aDiVIi~ag~~~~~g----~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .|++|..+|.....+    .+.   ...+..|+.    ..+.+.+.+.+. ..+.+|+++....           ..+ .
T Consensus        83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~-~~G~II~isS~~~-----------~~~-~  149 (260)
T d1zema1          83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQ-NYGRIVNTASMAG-----------VKG-P  149 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCHHH-----------HSC-C
T ss_pred             CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhh-cCCCCCeeechhh-----------ccC-C
Confidence            999999998643222    122   223444543    456666666554 4577777764211           111 2


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      |..-.++.+.-.-..|-+.+|.+++  ++.|++-.+-.
T Consensus       150 ~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~P  185 (260)
T d1zema1         150 PNMAAYGTSKGAIIALTETAALDLA--PYNIRVNAISP  185 (260)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhh--hhCCEEEEecc
Confidence            2211223322223456777888874  56677655543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.01  Score=48.26  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCch---H-------hhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL---E-------NALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d~---~-------~a~~~   88 (258)
                      .+.|+||++.+|..++..|++.|.  .|++.|+++++  ..+.++.....  .+..+. .-+|.   +       +.+-.
T Consensus         9 v~lITGas~GIG~~ia~~la~~G~--~V~l~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~~~g~   84 (244)
T d1yb1a_           9 IVLITGAGHGIGRLTAYEFAKLKS--KLVLWDINKHGLEETAAKCKGLGA--KVHTFVVDCSNREDIYSSAKKVKAEIGD   84 (244)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence            567779999999999999999997  99999998752  22333332211  222111 11222   1       23457


Q ss_pred             CCEEEEcCCCCCCCCC--chh----hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           89 MDLVIIPAGVPRKPGM--TRD----DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~--~r~----d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .|++|..+|.......  ...    +.+.-|    ....+.+.+.+.+.. .+.|++++....
T Consensus        85 idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~G~Iv~isS~~~  146 (244)
T d1yb1a_          85 VSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNN-HGHIVTVASAAG  146 (244)
T ss_dssp             CSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCC-
T ss_pred             CceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcC-CceEEEeecchh
Confidence            9999999987543322  122    233333    456677777777654 577777766544

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.88  E-value=0.00047  Score=53.36  Aligned_cols=66  Identities=17%  Similarity=0.338  Sum_probs=45.7

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      |+++||+|+|. |.+|+.++..+...+-++-+.++|++.+...         ......   ..+.++...+.|+|+++.
T Consensus         1 M~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---------~~~~~~---~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           1 MTNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---------KTPVFD---VADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             CCCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---------SSCEEE---GGGGGGTTTTCSEEEECS
T ss_pred             CCcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEeccccccc---------cccccc---chhhhhhccccceEEEeC
Confidence            45689999997 9999999888887655555567777653211         112221   245567788999999986

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.85  E-value=0.0091  Score=48.91  Aligned_cols=156  Identities=16%  Similarity=0.118  Sum_probs=84.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---h-------HhhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---L-------ENALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~~   88 (258)
                      .+.|+||++.+|..++..|+..|.  .|++.|+++++.  ...++........+..+. .-+|   .       .+.+-.
T Consensus         6 ~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~   83 (258)
T d1iy8a_           6 VVLITGGGSGLGRATAVRLAAEGA--KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFGR   83 (258)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence            678889999999999999999997  899999987522  122222221111222111 1112   1       122357


Q ss_pred             CCEEEEcCCCCCCCC----Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           89 MDLVIIPAGVPRKPG----MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        89 aDiVIi~ag~~~~~g----~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .|++|..||.....+    .+..   ..+..|+    ...+.+.+.+++.. .+.||+++.....           . +.
T Consensus        84 iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Ii~isS~~~~-----------~-~~  150 (258)
T d1iy8a_          84 IDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQG-SGMVVNTASVGGI-----------R-GI  150 (258)
T ss_dssp             CSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCGGGT-----------S-BC
T ss_pred             CCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhc-CCCCcccccHhhc-----------c-CC
Confidence            999999998643222    1222   2344444    34555566665544 5666666543221           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       151 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~i~  185 (258)
T d1iy8a_         151 GNQSGYAAAKHGVVGLTRNSAVEYG--RYGIRINAIA  185 (258)
T ss_dssp             SSBHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhC--ccCceEEEEe
Confidence            2111112222122346677788874  5567665554

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.85  E-value=0.0023  Score=50.19  Aligned_cols=83  Identities=19%  Similarity=0.178  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCC------eEE-----------EE--
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGA------VVR-----------GF--   76 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~------~v~-----------~~--   76 (258)
                      .-++-||.|||| |.+|..-+......|-  .|..+|++.+. .+...+.......      ...           .+  
T Consensus        26 ~V~pa~VvViGa-GvaG~~Aa~~A~~lGA--~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~  102 (183)
T d1l7da1          26 TVPPARVLVFGV-GVAGLQAIATAKRLGA--VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK  102 (183)
T ss_dssp             EECCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCSTTHHHHHHTTCEECCC-----------------------C
T ss_pred             CcCCcEEEEEcC-cHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence            334569999998 9999998877776665  99999998863 2322222111000      000           00  


Q ss_pred             eCCCchHhhhCCCCEEEEcCCCCCCC
Q 025075           77 LGQPQLENALTGMDLVIIPAGVPRKP  102 (258)
Q Consensus        77 ~~~~d~~~a~~~aDiVIi~ag~~~~~  102 (258)
                      .....+.+.+++||+||.++-.|.+.
T Consensus       103 ~~~~~l~~~l~~aDlVI~talipG~~  128 (183)
T d1l7da1         103 KQAEAVLKELVKTDIAITTALIPGKP  128 (183)
T ss_dssp             CHHHHHHHHHTTCSEEEECCCCTTSC
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCcc
Confidence            00112445689999999998766544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.84  E-value=0.01  Score=48.19  Aligned_cols=113  Identities=20%  Similarity=0.295  Sum_probs=67.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEe-CCCc---hH-------hhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~~a   89 (258)
                      +.+.|+||++.+|.+++..|+..|.  .|++.|+++.+.....+.....  .+..+. .-+|   .+       +.+-..
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~G~i   81 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGA--DIAIADLVPAPEAEAAIRNLGR--RVLTVKCDVSQPGDVEAFGKQVISTFGRC   81 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSCCHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCchHHHHHHHHHcCC--cEEEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence            3677889999999999999999997  8999999875322222222211  111111 1112   11       223579


Q ss_pred             CEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           90 DLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |++|..||......   .+..   ..+..|+    ...+.+.+.+++.. .+.||++|.
T Consensus        82 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~Iv~isS  139 (247)
T d2ew8a1          82 DILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNG-WGRIINLTS  139 (247)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcC-CCCcccccc
Confidence            99999998753221   1222   2334443    45566777777654 566777663

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.81  E-value=0.00079  Score=51.37  Aligned_cols=69  Identities=20%  Similarity=0.401  Sum_probs=44.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ||+|+||+|.+|.-+...|...++ ..++.++..+...|+..  ...  ........ ..  +..+.++|+++++.+
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~--~~~--~~~~~~~~-~~--~~~~~~~d~~f~~~~   72 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSL--KFK--DQDITIEE-TT--ETAFEGVDIALFSAG   72 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEE--EET--TEEEEEEE-CC--TTTTTTCSEEEECSC
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccc--ccc--CCcccccc-cc--hhhhhhhhhhhhccC
Confidence            899999999999999998888753 46788776544333221  111  11122111 11  356789999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0023  Score=49.22  Aligned_cols=82  Identities=15%  Similarity=0.180  Sum_probs=53.5

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHH--HHhcCCCCCeEEEEeCCCchHh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA--DISHMDTGAVVRGFLGQPQLEN   84 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~--dl~~~~~~~~v~~~~~~~d~~~   84 (258)
                      |.+..++..-..+.++|.|+|| |..+.++++.|...|.  +|.+++++.++++.+  .+.+.   ..+...  +.+ +.
T Consensus         5 f~~~l~~~~~~~~~k~vlIlGa-GGaarai~~al~~~g~--~i~I~nRt~~ka~~l~~~~~~~---~~~~~~--~~~-~~   75 (170)
T d1nyta1           5 LLSDLERLSFIRPGLRILLIGA-GGASRGVLLPLLSLDC--AVTITNRTVSRAEELAKLFAHT---GSIQAL--SMD-EL   75 (170)
T ss_dssp             HHHHHHHHTCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSHHHHHHHHHHTGGG---SSEEEC--CSG-GG
T ss_pred             HHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHhcccce--EEEeccchHHHHHHHHHHHhhc---cccccc--ccc-cc
Confidence            5666655444555579999998 9999999999999886  799999876543321  12111   123322  111 22


Q ss_pred             hhCCCCEEEEcCC
Q 025075           85 ALTGMDLVIIPAG   97 (258)
Q Consensus        85 a~~~aDiVIi~ag   97 (258)
                      ...++|+||.|..
T Consensus        76 ~~~~~dliIN~Tp   88 (170)
T d1nyta1          76 EGHEFDLIINATS   88 (170)
T ss_dssp             TTCCCSEEEECCS
T ss_pred             cccccceeecccc
Confidence            3578999999853

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.80  E-value=0.0025  Score=48.23  Aligned_cols=61  Identities=15%  Similarity=0.146  Sum_probs=39.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ||++||. |.+|..++..|...++  .+ .|++...+..  ++.....  ..   .  .. .+.+.++|++|++.
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~--~~-~~~~~~~~~~--~~~~~~~--~~---~--~~-~~~~~~~~~~i~~~   62 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFP--TL-VWNRTFEKAL--RHQEEFG--SE---A--VP-LERVAEARVIFTCL   62 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSC--EE-EECSSTHHHH--HHHHHHC--CE---E--CC-GGGGGGCSEEEECC
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCC--EE-EEeCCHHHHH--HHHHHcC--Cc---c--cc-cccccceeEEEecc
Confidence            7999998 9999999999998775  44 5665543322  2222111  11   1  11 35678899998874

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0077  Score=49.17  Aligned_cols=113  Identities=18%  Similarity=0.166  Sum_probs=69.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCc---hH-------hhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQ---LE-------NALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d---~~-------~a~~~   88 (258)
                      .+.|+||++.+|.+++..|++.|.  .|++.|++.++.  ...++........+..+. .-+|   .+       +.+-.
T Consensus         5 valITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~   82 (254)
T d2gdza1           5 VALVTGAAQGIGRAFAEALLLKGA--KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFGR   82 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            567889999999999999999997  899999987522  223343322111222211 1112   11       22347


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhH----HHHHHHHHHhhhhC--CCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKCC--PNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~----~i~~~i~~~i~~~~--p~a~viv~tN  138 (258)
                      .|++|..||.....  +-.+.+..|+    ...+..++.+.+..  ..+.|++++.
T Consensus        83 iDilVnnAg~~~~~--~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS  136 (254)
T d2gdza1          83 LDILVNNAGVNNEK--NWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSS  136 (254)
T ss_dssp             CCEEEECCCCCCSS--SHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             cCeecccccccccc--cchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeecc
Confidence            99999999875433  2233444444    45666777776653  3477777764

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0011  Score=51.10  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCC--CCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~--~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..+||+|+|++|.+|+.++..+...+-+.=+..+|+......-.|+.....  ...+..   +.|+++.++++|+||=.
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~---~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV---QSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE---ESCSTTTTTSCSEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCcee---eccHHHHhcccceEEEe
Confidence            457999999999999999988876543322345565432111122222111  112221   24566788999987653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.80  E-value=0.0031  Score=52.07  Aligned_cols=155  Identities=18%  Similarity=0.217  Sum_probs=84.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe--CC--CchH-------hhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL--GQ--PQLE-------NALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~--~~--~d~~-------~a~~   87 (258)
                      +.+.|+||++.+|..++..|+..|.  +|++.|++++..  ...++....   .+..+.  .+  .+.+       +.+-
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGA--KVVIADIADDHGQKVCNNIGSPD---VISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHCCTT---TEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhcCCC---ceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4678889999999999999999997  899999987532  223343221   121111  11  1122       2234


Q ss_pred             CCCEEEEcCCCCCC-C----CCchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           88 GMDLVIIPAGVPRK-P----GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        88 ~aDiVIi~ag~~~~-~----g~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      ..|++|..||.... +    ..+..   ..+..|+    -..+..++.+.+.. .+.+++++.....           .+
T Consensus        82 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~g~ii~iss~~~~-----------~~  149 (268)
T d2bgka1          82 KLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAK-KGSIVFTASISSF-----------TA  149 (268)
T ss_dssp             CCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGT-CEEEEEECCGGGT-----------CC
T ss_pred             CcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcC-CCCcccccccccc-----------cc
Confidence            78999999986432 1    11211   2334443    45566667666554 4555555543221           01


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.+..-.++.+.-.-..+-+.+|.+++  +..|++-.+-
T Consensus       150 ~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  186 (268)
T d2bgka1         150 GEGVSHVYTATKHAVLGLTTSLCTELG--EYGIRVNCVS  186 (268)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             ccccccccchhHHHHHhCHHHHHHHhC--hhCeEEEecC
Confidence            011111222222223456677788875  5567655444

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.0041  Score=47.28  Aligned_cols=67  Identities=12%  Similarity=0.209  Sum_probs=43.8

Q ss_pred             CCeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHH-HHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ++||+|||+ |.+|.. ....+...+-++-+.++|.++++.... +-...    .     ..+++++.+++.|+|+++.
T Consensus         1 Kiri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~----~-----~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           1 KLRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRI----P-----YADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             CEEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTC----C-----BCSSHHHHHTTCSEEEECS
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccc----c-----ccccchhhhhhcccccccc
Confidence            379999997 999975 566666654455567899987643321 11111    1     1245667779999999885

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.79  E-value=0.0077  Score=49.16  Aligned_cols=154  Identities=17%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCc---h-------HhhhCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---L-------ENALTG   88 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~~   88 (258)
                      .+.|+||++.+|..++..|+..|.  .|++.|++++.  ....++.....  .+..+. .-+|   .       .+.+..
T Consensus        12 valITGas~GIG~a~a~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvt~~~~v~~~~~~~~~~~g~   87 (251)
T d2c07a1          12 VALVTGAGRGIGREIAKMLAKSVS--HVICISRTQKSCDSVVDEIKSFGY--ESSGYAGDVSKKEEISEVINKILTEHKN   87 (251)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTTSS--EEEEEESSHHHHHHHHHHHHTTTC--CEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            455779999999999999999997  89999997642  22334443221  121111 1112   1       123358


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~  158 (258)
                      -|++|..+|......   .+.   ...+..|+    ...+..++.+.+.. .+.||++|....           ..+ .|
T Consensus        88 iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~IVnisS~~~-----------~~~-~~  154 (251)
T d2c07a1          88 VDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNR-YGRIINISSIVG-----------LTG-NV  154 (251)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHT-CEEEEEECCTHH-----------HHC-CT
T ss_pred             ceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCC-CeEEEEECCHHh-----------cCC-CC
Confidence            999999998644322   121   12334443    45566677776654 577777764222           011 23


Q ss_pred             CCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       159 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       155 ~~~~Y~asKaal~~ltr~lA~el~--~~gIrVN~V~  188 (251)
T d2c07a1         155 GQANYSSSKAGVIGFTKSLAKELA--SRNITVNAIA  188 (251)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhh--hhCeEEEEEc
Confidence            222233332223356677888874  5567765544

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.78  E-value=0.0094  Score=48.75  Aligned_cols=115  Identities=14%  Similarity=0.197  Sum_probs=68.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc---h-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ---L-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d---~-------~~a~~   87 (258)
                      +.+.|+||++.+|.+++..|++.|.  +|++.|++.++.  ...++.... ...+..+.. -+|   .       .+.+-
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGA--NVAVIYRSAADAVEVTEKVGKEF-GVKTKAYQCDVSNTDIVTKTIQQIDADLG   86 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCTTHHHHHHHHHHHH-TCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHHh-CCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            3677889999999999999999997  899999987521  122232111 111111111 111   1       12334


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|..+|......   .+..   +.+..|+    ...+.+++.+.+....+.+++.+.
T Consensus        87 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s  147 (260)
T d1h5qa_          87 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSS  147 (260)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECC
T ss_pred             CCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeec
Confidence            7999999998643221   1222   2344454    455677777777776777766543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.016  Score=43.97  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             HhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh-
Q 025075            9 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL-   86 (258)
Q Consensus         9 ~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~-   86 (258)
                      ++.+|. +..+.-+|.|+|+ |.+|...+..+...|. ..|+..|.++.+- .+.++.   +. .+.. ....+..+.. 
T Consensus        17 ~a~~~~-~~~~gd~VlI~G~-G~iG~~~~~~a~~~G~-~~Vi~~d~~~~rl~~a~~~G---a~-~~~~-~~~~~~~~~~~   88 (171)
T d1pl8a2          17 HACRRG-GVTLGHKVLVCGA-GPIGMVTLLVAKAMGA-AQVVVTDLSATRLSKAKEIG---AD-LVLQ-ISKESPQEIAR   88 (171)
T ss_dssp             HHHHHH-TCCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTT---CS-EEEE-CSSCCHHHHHH
T ss_pred             HHHHHh-CCCCCCEEEEECC-CccHHHHHHHHHHcCC-ceEEeccCCHHHHHHHHHhC---Cc-cccc-ccccccccccc
Confidence            444443 2444458999998 9999999988888774 5899999986532 222221   11 1211 1223332222 


Q ss_pred             -------CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           87 -------TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        87 -------~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                             .++|+||-+.|.+               ..+...   +.-..|.+.+++++.|.+
T Consensus        89 ~~~~~~g~g~Dvvid~~G~~---------------~~~~~a---~~~~~~gG~iv~~G~~~~  132 (171)
T d1pl8a2          89 KVEGQLGCKPEVTIECTGAE---------------ASIQAG---IYATRSGGTLVLVGLGSE  132 (171)
T ss_dssp             HHHHHHTSCCSEEEECSCCH---------------HHHHHH---HHHSCTTCEEEECSCCCS
T ss_pred             cccccCCCCceEEEeccCCc---------------hhHHHH---HHHhcCCCEEEEEecCCC
Confidence                   3799999998632               112222   222347888888876544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.0022  Score=48.24  Aligned_cols=100  Identities=9%  Similarity=0.033  Sum_probs=61.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---h-HhhhCCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---L-ENALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~-~~a~~~aDiV   92 (258)
                      +.+|.|+|. |.+|..++..|...+.  +++++|.+++.  ....++....    +..+.+ .+|   + ...+++||.|
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~--~v~vId~d~~~~~~~~~~~~~~~----~~vi~Gd~~d~~~L~~a~i~~a~~v   75 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQ--NVTVISNLPEDDIKQLEQRLGDN----ADVIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTC--CEEEEECCCHHHHHHHHHHHCTT----CEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCC--CEEEEeccchhHHHHHHHhhcCC----cEEEEccCcchHHHHHhccccCCEE
Confidence            347999998 9999999999998887  89999988752  2222332221    222222 122   2 2236789999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCCC
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPVN  141 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPvd  141 (258)
                      |++.+.         |  ..|+.+    +..+++.+|+..++. +.+|-+
T Consensus        76 i~~~~~---------d--~~n~~~----~~~~r~~~~~~~iia~~~~~~~  110 (153)
T d1id1a_          76 LALSDN---------D--ADNAFV----VLSAKDMSSDVKTVLAVSDSKN  110 (153)
T ss_dssp             EECSSC---------H--HHHHHH----HHHHHHHTSSSCEEEECSSGGG
T ss_pred             EEcccc---------H--HHHHHH----HHHHHHhCCCCceEEEEcCHHH
Confidence            998531         1  234433    344567778865544 456655

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.73  E-value=0.0059  Score=43.57  Aligned_cols=68  Identities=19%  Similarity=0.156  Sum_probs=47.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .||.|||+ |.+|..-+..|...|-  +|.+++........ .+.+..   .+.......+ .+.+.++++|+.+.
T Consensus        13 k~vlVvG~-G~va~~ka~~ll~~ga--~v~v~~~~~~~~~~-~~~~~~---~i~~~~~~~~-~~dl~~~~lv~~at   80 (113)
T d1pjqa1          13 RDCLIVGG-GDVAERKARLLLEAGA--RLTVNALTFIPQFT-VWANEG---MLTLVEGPFD-ETLLDSCWLAIAAT   80 (113)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTB--EEEEEESSCCHHHH-HHHTTT---SCEEEESSCC-GGGGTTCSEEEECC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccCChHHH-HHHhcC---CceeeccCCC-HHHhCCCcEEeecC
Confidence            59999998 9999999999999886  89999986653322 232221   2222222233 36799999999875

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0013  Score=51.81  Aligned_cols=92  Identities=24%  Similarity=0.320  Sum_probs=61.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      .++|+|+|. |.+|..++..+..-|.  +|..||.......         .....    ..++++.++.||+|+++....
T Consensus        44 ~~~vgiiG~-G~IG~~va~~l~~fg~--~v~~~d~~~~~~~---------~~~~~----~~~l~ell~~sDii~i~~plt  107 (188)
T d1sc6a1          44 GKKLGIIGY-GHIGTQLGILAESLGM--YVYFYDIENKLPL---------GNATQ----VQHLSDLLNMSDVVSLHVPEN  107 (188)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSCCCCC---------TTCEE----CSCHHHHHHHCSEEEECCCSS
T ss_pred             ceEEEEeec-ccchhhhhhhcccccc--eEeeccccccchh---------hhhhh----hhhHHHHHhhccceeecccCC
Confidence            469999998 9999999998887777  9999997542110         00111    236789999999999987432


Q ss_pred             C-CCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC--CC
Q 025075          100 R-KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP--VN  141 (258)
Q Consensus       100 ~-~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP--vd  141 (258)
                      . ..+.     +  |    ++.   +.+..+++++|+++=.  +|
T Consensus       108 ~~T~~l-----i--~----~~~---l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1         108 PSTKNM-----M--G----AKE---ISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             TTTTTC-----B--C----HHH---HHHSCTTEEEEECSCSSSBC
T ss_pred             cchhhh-----c--c----HHH---HhhCCCCCEEEEcCcHHhhh
Confidence            1 1121     1  1    222   3344588999999743  55

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.011  Score=48.44  Aligned_cols=155  Identities=15%  Similarity=0.155  Sum_probs=85.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEe-CCCch----------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (258)
                      +.+.|+||++.+|.+++..|+..|.  .|++.|+++++.  ...++.....  ....+. .-+|.          .+.+-
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~l~~~g~--~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLGG--QAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCC--cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            3678889999999999999999997  899999976522  2223333211  111111 11121          22345


Q ss_pred             CCCEEEEcCCCCCCC--CCchhh---HHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 025075           88 GMDLVIIPAGVPRKP--GMTRDD---LFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~--g~~r~d---~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~  158 (258)
                      .-|++|..||.....  ..+..+   .+..|+    ...+.+++.+.+.. .+.+|+++.-...           . +.|
T Consensus        88 ~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Ii~isS~~~~-----------~-~~~  154 (255)
T d1fmca_          88 KVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNG-GGVILTITSMAAE-----------N-KNI  154 (255)
T ss_dssp             SCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------C-CCT
T ss_pred             CCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccc-ccccccccccchh-----------c-ccc
Confidence            899999999875322  222222   334443    45566777777665 4555555532210           0 122


Q ss_pred             CCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       159 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ..-.++.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       155 ~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  188 (255)
T d1fmca_         155 NMTSYASSKAAASHLVRNMAFDLG--EKNIRVNGIA  188 (255)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHHHHHhC--ccCeEEEEee
Confidence            211222222223456677888874  5667765544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.69  E-value=0.0016  Score=53.25  Aligned_cols=154  Identities=19%  Similarity=0.159  Sum_probs=81.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCCCeEEEEeCCCch-------HhhhCCCCE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTGAVVRGFLGQPQL-------ENALTGMDL   91 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~~~v~~~~~~~d~-------~~a~~~aDi   91 (258)
                      +++.|+||++.+|..++..|+..|.  +|++.|+++++.+.  .++......+++   ....+.       .+.+..-|+
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~--~V~~~~r~~~~l~~~~~~~~~~~~~~Dv---~~~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGA--RLVACDIEEGPLREAAEAVGAHPVVMDV---ADPASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTTCEEEECCT---TCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHHHHhcCCceE
Confidence            4688999999999999999999997  89999998642211  111100000011   000111       223357899


Q ss_pred             EEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           92 VIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        92 VIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +|..||......   .+.   ...+..|+.    ..+.+.+.+.+.. .+.+++.+. ..           .. +.|..-
T Consensus        81 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~~~i~~~ss-~~-----------~~-~~~~~~  146 (242)
T d1ulsa_          81 VVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKN-PGSIVLTAS-RV-----------YL-GNLGQA  146 (242)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-CEEEEEECC-GG-----------GG-CCTTCH
T ss_pred             EEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccc-cceeeeecc-cc-----------cc-CCCCCc
Confidence            999999754321   222   223444544    4455566555443 344544442 11           01 123222


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      .++.+.-.-..|-+.+|.+++  ++.|++-.+-.
T Consensus       147 ~Y~asKaal~~ltk~lA~ela--~~gIrVN~I~P  178 (242)
T d1ulsa_         147 NYAASMAGVVGLTRTLALELG--RWGIRVNTLAP  178 (242)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEE
T ss_pred             chHHHHHHHHHHHHHHHHHHh--hhCcEEEEEee
Confidence            223322122346677788874  56677655543

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.68  E-value=0.0027  Score=51.90  Aligned_cols=155  Identities=17%  Similarity=0.193  Sum_probs=84.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEE-EEeCCCch-------HhhhCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVR-GFLGQPQL-------ENALTGMD   90 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~-~~~~~~d~-------~~a~~~aD   90 (258)
                      +.+.|+||++.+|..++..|++.|.  +|++.|+++++.  ...++.....  .+. ++....+.       .+.+...|
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~V~~~~r~~~~~~~~~~~~~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGA--KVVFGDILDEEGKAMAAELADAAR--YVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHTGGGEE--EEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhCcce--EEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            4677889999999999999999997  899999987532  2223322110  000 00000111       22345799


Q ss_pred             EEEEcCCCCCCC---CCch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCC
Q 025075           91 LVIIPAGVPRKP---GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK  160 (258)
Q Consensus        91 iVIi~ag~~~~~---g~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~  160 (258)
                      ++|..||.....   ..+.   .+.+..|+    ...+...+.+.+. +.+.||+++.....           . +.|..
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~-----------~-~~~~~  149 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEA-GRGSIINISSIEGL-----------A-GTVAC  149 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT-----------S-CCTTB
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhc-CcceEEeccccccc-----------c-ccccc
Confidence            999999874322   1122   22344444    3445566666654 45777777654331           0 12211


Q ss_pred             cEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          161 KLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       161 kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      -.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       150 ~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  181 (244)
T d1nffa_         150 HGYTATKFAVRGLTKSTALELG--PSGIRVNSIH  181 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHHhc--ccCEEEEEEe
Confidence            1222222122356677788874  5567654443

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.67  E-value=0.0088  Score=45.43  Aligned_cols=67  Identities=24%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             CeEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~a   96 (258)
                      +||+|||+ |.+|+. ....+...+.+ +++++|.+++....  +........     ..+|+++.++ +.|+|+++.
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~--~~~~~~~~~-----~~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGT--LATRYRVSA-----TCTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHH--HHHHTTCCC-----CCSSTTGGGGGCCSEEEECS
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHH--HHHhccccc-----ccccHHHhcccccceecccc
Confidence            79999998 999976 55666655433 78899987653322  111110001     1134455554 789999975

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.66  E-value=0.007  Score=46.76  Aligned_cols=70  Identities=10%  Similarity=0.218  Sum_probs=43.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh--CCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~--~~aDiVIi~a   96 (258)
                      +||+|||+ |.+|...+..+...+-+ +|+ ++|++++++...- .....+...+.+   +|+++.+  .+.|+|+++.
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~-~~~~~~~~~~~~---~~~~~ll~~~~iD~v~I~t   74 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFA-TANNYPESTKIH---GSYESLLEDPEIDALYVPL   74 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHH-HHTTCCTTCEEE---SSHHHHHHCTTCCEEEECC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCC-EEEEEEeCCccccccch-hccccccceeec---CcHHHhhhccccceeeecc
Confidence            69999997 99999998888765544 444 7788765332211 111111122222   4666666  4689999874

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.65  E-value=0.0019  Score=49.68  Aligned_cols=79  Identities=14%  Similarity=0.195  Sum_probs=51.6

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      |.+..++..-+ +..||.|+|+ |.++.++++.|...|. .+|.+++++.++++.  |.... .  ....   .+  ...
T Consensus         5 ~~~~l~~~~~~-~~~~vlIlGa-GGaarai~~aL~~~g~-~~I~I~nR~~~ka~~--L~~~~-~--~~~~---~~--~~~   71 (167)
T d1npya1           5 IVKLIEKYHLN-KNAKVIVHGS-GGMAKAVVAAFKNSGF-EKLKIYARNVKTGQY--LAALY-G--YAYI---NS--LEN   71 (167)
T ss_dssp             HHHHHHHTTCC-TTSCEEEECS-STTHHHHHHHHHHTTC-CCEEEECSCHHHHHH--HHHHH-T--CEEE---SC--CTT
T ss_pred             HHHHHHHcCCC-CCCeEEEECC-CHHHHHHHHHHHHCCC-CEEEEecccHHHHHH--HHHhh-h--hhhh---hc--ccc
Confidence            55555555433 4568999998 9999999999998885 589999987654433  22211 1  1111   11  124


Q ss_pred             CCCCEEEEcCCC
Q 025075           87 TGMDLVIIPAGV   98 (258)
Q Consensus        87 ~~aDiVIi~ag~   98 (258)
                      .++|+||.|...
T Consensus        72 ~~~DliINaTpi   83 (167)
T d1npya1          72 QQADILVNVTSI   83 (167)
T ss_dssp             CCCSEEEECSST
T ss_pred             cchhhheecccc
Confidence            689999998543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.61  E-value=0.0013  Score=53.06  Aligned_cols=35  Identities=14%  Similarity=0.292  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ...||+|||| |..|.++|..|.+.|+  ++.++|...
T Consensus         3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~--~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGG-SISGLTAALMLRDAGV--DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            4469999998 9999999999999998  999999754

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.61  E-value=0.0013  Score=51.11  Aligned_cols=85  Identities=20%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             HHHhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHH--HHHhcCCCC---CeEEEEeCCCc
Q 025075            7 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT--ADISHMDTG---AVVRGFLGQPQ   81 (258)
Q Consensus         7 ~~~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~--~dl~~~~~~---~~v~~~~~~~d   81 (258)
                      |.+...+.-+.-+.++|.|+|+ |.++.++++.|...+   +|.++.++.++++.  .++......   ..+. +   .+
T Consensus         5 ~~~~l~~~~~~~~~k~vlIlGa-GG~arai~~aL~~~~---~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~-~---~~   76 (177)
T d1nvta1           5 ARMALEEEIGRVKDKNIVIYGA-GGAARAVAFELAKDN---NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK-F---SG   76 (177)
T ss_dssp             HHHHHHHHHCCCCSCEEEEECC-SHHHHHHHHHHTSSS---EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE-E---EC
T ss_pred             HHHHHHHhCCCcCCCEEEEECC-cHHHHHHHHHHcccc---ceeeehhhhhHHHHHHHHHHHhhchhhhhhhh-h---hh
Confidence            5666666666666679999998 999999999986544   89999987654332  233222111   1122 1   23


Q ss_pred             hHhhhCCCCEEEEcCCCC
Q 025075           82 LENALTGMDLVIIPAGVP   99 (258)
Q Consensus        82 ~~~a~~~aDiVIi~ag~~   99 (258)
                      +...+.++|++|.+...+
T Consensus        77 ~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          77 LDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             TTCCCTTCCEEEECSCTT
T ss_pred             hhhccchhhhhccCCccc
Confidence            445678999999986443

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0026  Score=51.85  Aligned_cols=154  Identities=14%  Similarity=0.211  Sum_probs=85.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEE-EEeCCCch-------HhhhCCCCE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVR-GFLGQPQL-------ENALTGMDL   91 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~-~~~~~~d~-------~~a~~~aDi   91 (258)
                      .+.|+||++.+|.+++..|++.|.  .|++.|++++..  ...++.....  .+. ++....+.       .+.+-..|+
T Consensus         6 ~alITGas~GIG~a~a~~l~~~G~--~Vv~~~r~~~~l~~~~~~~~~~~~--~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           6 IALVTGASRGIGRAIAETLAARGA--KVIGTATSENGAQAISDYLGANGK--GLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             EEEESSCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHHHGGGEE--EEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhCCCCc--EEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            567779999999999999999997  899999986522  1222221100  000 00000111       122347999


Q ss_pred             EEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCc
Q 025075           92 VIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKK  161 (258)
Q Consensus        92 VIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~k  161 (258)
                      +|..||......   .+..   ..+..|+    ...+.+.+.+.+.. .+.||++|....           ..+ .|..-
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~G~II~isS~~~-----------~~~-~~~~~  148 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKR-HGRIITIGSVVG-----------TMG-NGGQA  148 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCHHH-----------HHC-CTTCH
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcC-CCEeeeecchhh-----------cCC-CCCCH
Confidence            999998754322   1111   2334443    45666777766654 577777764211           111 22222


Q ss_pred             EEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          162 LLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       162 viG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .++.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       149 ~Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  179 (243)
T d1q7ba_         149 NYAAAKAGLIGFSKSLAREVA--SRGITVNVVA  179 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--ccCeEEEEEe
Confidence            233332223456777888874  5567655444

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.59  E-value=0.00048  Score=55.95  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=31.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .||.|+||+|.+|..++..|++.|.  +|++.|+++.
T Consensus         3 gkVlITGas~GIG~aia~~l~~~G~--~V~~~~~~~~   37 (235)
T d1ooea_           3 GKVIVYGGKGALGSAILEFFKKNGY--TVLNIDLSAN   37 (235)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTE--EEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCch
Confidence            4899999999999999999999997  8999999763

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.58  E-value=0.0014  Score=53.97  Aligned_cols=112  Identities=13%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCC--CCeEEEEeCCCch-------HhhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT--GAVVRGFLGQPQL-------ENALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~--~~~v~~~~~~~d~-------~~a~~~a   89 (258)
                      +.+.|+||++.+|.+++..|+..|.  .|++.|++++.  ....++.....  .+.+.   ...+.       .+.+-.-
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga--~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~---~~~~~~~~~~~~~~~~g~i   81 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGA--KVAFSDINEAAGQQLAAELGERSMFVRHDVS---SEADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCTTEEEECCCTT---CHHHHHHHHHHHHHHHCSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCCCeEEEEeecC---CHHHHHHHHHHHHHHhCCC
Confidence            3677889999999999999999997  89999998642  22223322110  11110   00111       2234578


Q ss_pred             CEEEEcCCCCCCCC---Cchh---hHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           90 DLVIIPAGVPRKPG---MTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r~---d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      |++|..||......   .+..   ..+..|    ....+...+.+++.  .+.||+++..
T Consensus        82 DilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~--~G~Iv~isS~  139 (253)
T d1hxha_          82 NVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKET--GGSIINMASV  139 (253)
T ss_dssp             CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTT--CEEEEEECCG
T ss_pred             CeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CCceecccch
Confidence            99999999754221   1221   233444    34566777777543  4778877653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.58  E-value=0.0014  Score=52.33  Aligned_cols=33  Identities=24%  Similarity=0.374  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +||+|||| |..|.+.|+.|.++|+  +|.++|.+.
T Consensus         7 ~kVvVIGa-GiaGl~~A~~L~~~G~--~V~vier~~   39 (268)
T d1c0pa1           7 KRVVVLGS-GVIGLSSALILARKGY--SVHILARDL   39 (268)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CcEEEECc-cHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            58999998 9999999999999998  899999753

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=96.57  E-value=0.0035  Score=51.25  Aligned_cols=157  Identities=15%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHH-HhcCCCCCeEEEEe----CCCchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFL----GQPQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~d-l~~~~~~~~v~~~~----~~~d~~~a~~~aDiVIi~   95 (258)
                      +.+.|+||++.+|.+++..|++.|.  .|++.|++++..+..+ +......+++....    .-....+.+-..|++|..
T Consensus         6 K~alITGas~GIG~aia~~la~~G~--~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLVnn   83 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGA--LVALCDLRPEGKEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLVNN   83 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSTTHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEe
Confidence            3788999999999999999999997  8999999875322221 11111111110000    000112334589999999


Q ss_pred             CCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           96 AGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        96 ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      ||......   .+..   ..+.-|+    .+.+.+.+.+++.. .+.||+++.....           . +.|..-.++.
T Consensus        84 AG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~Ii~isS~~~~-----------~-~~~~~~~Y~a  150 (248)
T d2d1ya1          84 AAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVG-GGAIVNVASVQGL-----------F-AEQENAAYNA  150 (248)
T ss_dssp             CCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTT-CEEEEEECCGGGT-----------S-BCTTBHHHHH
T ss_pred             CcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccc-ccccccccccccc-----------c-cccccchhHH
Confidence            98743211   1222   2334443    45566667666543 5677777643321           0 1221111222


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.-.-..|-+.+|++++  ++.|++-.+-
T Consensus       151 sKaal~~ltk~lA~el~--~~gIrVN~I~  177 (248)
T d2d1ya1         151 SKGGLVNLTRSLALDLA--PLRIRVNAVA  177 (248)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            21122346677888875  5566654443

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.52  E-value=0.0011  Score=53.95  Aligned_cols=154  Identities=15%  Similarity=0.175  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-----HHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-----~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +.+++.|+||++.+|..++..|++.|.  +|++.|++++...     ..|+.+..   .++..  -....+.+..-|++|
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~Dv~~~~---~v~~~--~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH--KVAVTHRGSGAPKGLFGVEVDVTDSD---AVDRA--FTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSSCCCTTSEEEECCTTCHH---HHHHH--HHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcchhcCceEEEEecCCHH---HHHHH--HHHHHHhcCCceEEE
Confidence            445788999999999999999999997  9999999874211     11222111   00000  011234456899999


Q ss_pred             EcCCCCCCC---CCch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEE
Q 025075           94 IPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL  163 (258)
Q Consensus        94 i~ag~~~~~---g~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kvi  163 (258)
                      ..||.....   ..+.   .+.+..|+.    ..+.+++.+.+.. .+.||+++.-....            +.|..-.+
T Consensus        79 nnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~-~g~Iv~isS~~~~~------------~~~~~~~Y  145 (237)
T d1uzma1          79 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNK-FGRMIFIGSVSGLW------------GIGNQANY  145 (237)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEEECCCCC-----------------CCHHH
T ss_pred             eeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccC-CCceEEEcchhhcc------------CCcccHHH
Confidence            999874322   1222   223444543    4566666666554 56677776544310            01111122


Q ss_pred             EEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          164 GVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       164 G~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.+.-.-..|-+.+|.++.  ++.|++-.+-
T Consensus       146 ~asKaal~~lt~~lA~e~~--~~gIrVN~I~  174 (237)
T d1uzma1         146 AASKAGVIGMARSIARELS--KANVTANVVA  174 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhhh--cCCceeeeee
Confidence            2221122346677788774  5567655444

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.50  E-value=0.013  Score=45.19  Aligned_cols=71  Identities=15%  Similarity=0.127  Sum_probs=42.5

Q ss_pred             CCCCeEEEEcCCCchHHH-HHHHHHhCCCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--CCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~-~a~~L~~~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVI   93 (258)
                      |+++||+|||+ |.+|.. .+..+...+..-+|+ ++|.++++...  +.+.. . ....+   +|+++.++  +.|+|+
T Consensus         1 MkkirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~--~~~~~-~-~~~~~---~~~~ell~~~~id~v~   72 (181)
T d1zh8a1           1 LRKIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEE--FAKMV-G-NPAVF---DSYEELLESGLVDAVD   72 (181)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHH--HHHHH-S-SCEEE---SCHHHHHHSSCCSEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhh--hhccc-c-cccee---eeeeccccccccceee
Confidence            46689999997 999986 466666533222444 78887653322  22111 1 11112   46777775  589999


Q ss_pred             EcC
Q 025075           94 IPA   96 (258)
Q Consensus        94 i~a   96 (258)
                      ++.
T Consensus        73 I~t   75 (181)
T d1zh8a1          73 LTL   75 (181)
T ss_dssp             ECC
T ss_pred             ccc
Confidence            874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0096  Score=48.89  Aligned_cols=113  Identities=15%  Similarity=0.168  Sum_probs=64.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeC-CCc----------hHhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG-QPQ----------LENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~-~~d----------~~~a~~   87 (258)
                      +++.|+||++.+|.+++..|+..|.  +|++.|++++..  ...++.... ......+.. ..+          ..+...
T Consensus        15 K~alITGassGIG~aiA~~la~~G~--~Vil~~r~~~~l~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGA--HVVVTARSKETLQKVVSHCLELG-AASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHT-CSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhhhh-cccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            3789999999999999999999997  899999987521  112222111 112211111 111          122235


Q ss_pred             CCCEEEEcCCCCCCCC---Cchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|+++..+|......   .+..   ..+..|+    ...+.+.+.+++.  ++.+++++.
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~--~G~ii~isS  150 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQS--NGSIVVVSS  150 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH--TCEEEEEEE
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhc--CCcceEecc
Confidence            7899999887533211   1221   2233343    4556666666543  466666653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.50  E-value=0.026  Score=45.93  Aligned_cols=114  Identities=17%  Similarity=0.135  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-ChhHHHHHhcCCCCCeEEEEe--CCCc---h-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL--GQPQ---L-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~-~~g~~~dl~~~~~~~~v~~~~--~~~d---~-------~~a~~   87 (258)
                      +.|.|+||++.+|..+|..|+..|.  .+++.+++. ......++........+..+.  .+.+   .       .+.+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~--~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~g   83 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNL--KNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQLK   83 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCC--SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999986  566664443 322222222211111222111  1111   1       12235


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhH----HHHHHHHHHhhhh--CCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINA----GIVRTLCEGIAKC--CPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~----~i~~~i~~~i~~~--~p~a~viv~tN  138 (258)
                      ..|++|..||......  -...+..|+    ...+.+.+.+.+.  ++.+.||+++.
T Consensus        84 ~iDilvnnAG~~~~~~--~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS  138 (254)
T d1sbya1          84 TVDILINGAGILDDHQ--IERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICS  138 (254)
T ss_dssp             CCCEEEECCCCCCTTC--HHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECC
T ss_pred             CCCEEEeCCCCCCHHH--HHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEec
Confidence            7999999998653322  233444554    3667777788654  35677877753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.50  E-value=0.0016  Score=53.46  Aligned_cols=38  Identities=18%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -+.+++||+|||| |..|.+.|+.|.+.|+  +|.++|...
T Consensus        26 ~~~~pkkV~IIGa-G~aGLsaA~~L~~~G~--~V~vlE~~~   63 (370)
T d2iida1          26 ATSNPKHVVIVGA-GMAGLSAAYVLAGAGH--QVTVLEASE   63 (370)
T ss_dssp             CCSSCCEEEEECC-BHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CCCCCCeEEEECC-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            3556679999998 9999999999999998  999999765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.012  Score=48.01  Aligned_cols=80  Identities=15%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCC---------chHhhh
Q 025075           19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQP---------QLENAL   86 (258)
Q Consensus        19 ~~~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~---------d~~~a~   86 (258)
                      +.+++.|+||+|  .+|.+++..|+..|.  +|++.|++++ .....++..............+.         +..+.+
T Consensus         4 ~gK~alITGaag~~GIG~AiA~~la~~Ga--~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           4 KGKKGLIVGVANNKSIAYGIAQSCFNQGA--TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            345899999877  599999999999998  9999999874 22233333222111121111111         112334


Q ss_pred             CCCCEEEEcCCCCC
Q 025075           87 TGMDLVIIPAGVPR  100 (258)
Q Consensus        87 ~~aDiVIi~ag~~~  100 (258)
                      ...|++|.++|...
T Consensus        82 g~id~lV~nag~~~   95 (274)
T d2pd4a1          82 GSLDFIVHSVAFAP   95 (274)
T ss_dssp             SCEEEEEECCCCCC
T ss_pred             CCCCeEEeeccccc
Confidence            68999999988643

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.46  E-value=0.023  Score=46.78  Aligned_cols=114  Identities=17%  Similarity=0.254  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCC-CeEEEEeC-CCc---hHh-------hh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTG-AVVRGFLG-QPQ---LEN-------AL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~-~~v~~~~~-~~d---~~~-------a~   86 (258)
                      +.+.|+||++.+|.+++..|+..|.  .|++.|+++++  ....++...... ..+..+.. -+|   .++       .+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGA--QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            3688999999999999999999997  89999998652  222334332211 12222211 111   111       23


Q ss_pred             CCCCEEEEcCCCCCCCC-----Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075           87 TGMDLVIIPAGVPRKPG-----MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g-----~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      -..|++|..+|.....+     ++..   ..+..|+.    ..+.+.+.+.+. ..+.++++|
T Consensus        83 G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~g~ii~~s  144 (274)
T d1xhla_          83 GKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKT-KGEIVNVSS  144 (274)
T ss_dssp             SCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TCEEEEECC
T ss_pred             CCceEEEeecccccccccccccCCHHHHHHHHhhccccccccccccccccccc-ccccccchh
Confidence            46899999998643222     1221   22333433    556666666543 456666554

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.45  E-value=0.016  Score=47.30  Aligned_cols=155  Identities=13%  Similarity=0.080  Sum_probs=83.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hH-------hhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LE-------NALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~-------~a~~   87 (258)
                      +.+.|+||++.+|..++..|+..|.  .|++.|+++++  ....++.....  ....+.. -+|   .+       +.+.
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGA--SVYTCSRNQKELNDCLTQWRSKGF--KVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--CceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4688999999999999999999997  89999998642  22223332211  2211111 111   11       1223


Q ss_pred             -CCCEEEEcCCCCCCCC---Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 -GMDLVIIPAGVPRKPG---MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 -~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                       ..|++|..||......   .+.   ...+..|+.    +.+...+.+.+. ..+.||+++.-...           . +
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~-----------~-~  151 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKAS-ERGNVVFISSVSGA-----------L-A  151 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-SSEEEEEECCGGGT-----------S-C
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhh-cccccccccccccc-----------c-c
Confidence             4799999998754322   122   224455544    345555555443 45677776642220           0 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .|..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       152 ~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  187 (259)
T d2ae2a_         152 VPYEAVYGATKGAMDQLTRCLAFEWA--KDNIRVNGVG  187 (259)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             cccccchHHHHHHHHHHHHHHHHHhC--cCceEEEEee
Confidence            22111122221122346677888874  5567654443

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.0013  Score=53.85  Aligned_cols=155  Identities=16%  Similarity=0.154  Sum_probs=84.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCC-----CchHhhhCCCCEEEEc
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVIIP   95 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~-----~d~~~a~~~aDiVIi~   95 (258)
                      +++.|+||++.+|.+++..|+..|.  +|++.|+++++.  .++.+.. ..........     ....+.+...|++|.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vi~~~r~~~~l--~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~   81 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGA--KVIATDINESKL--QELEKYP-GIQTRVLDVTKKKQIDQFANEVERLDVLFNV   81 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESCHHHH--GGGGGST-TEEEEECCTTCHHHHHHHHHHCSCCSEEEEC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHH--HHHHhcc-CCceeeeeccccccccccccccccceeEEec
Confidence            3677889999999999999999997  999999976421  1122211 1111111100     1122344689999999


Q ss_pred             CCCCCCCC---Cchhh---HHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE
Q 025075           96 AGVPRKPG---MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV  165 (258)
Q Consensus        96 ag~~~~~g---~~r~d---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~  165 (258)
                      +|.+....   .+..+   .+.-|    ....+.+.+.+.+. +.+-+++++......          . +++..-.++.
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-~~g~Ii~isS~~~~~----------~-~~~~~~~Y~~  149 (245)
T d2ag5a1          82 AGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQ-KSGNIINMSSVASSV----------K-GVVNRCVYST  149 (245)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCSBTTT----------B-CCTTBHHHHH
T ss_pred             ccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccC-CCceeeeeechhhcc----------C-CccchhHHHH
Confidence            98754321   12221   23333    34556666666554 456666666443210          0 1222112222


Q ss_pred             eeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          166 TMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       166 t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       150 sKaal~~l~r~lA~e~~--~~gIrvN~I~  176 (245)
T d2ag5a1         150 TKAAVIGLTKSVAADFI--QQGIRCNCVC  176 (245)
T ss_dssp             HHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            22123456778888875  5567765554

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.40  E-value=0.017  Score=47.08  Aligned_cols=155  Identities=15%  Similarity=0.118  Sum_probs=82.7

Q ss_pred             eE-EEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---h-------HhhhC
Q 025075           22 KV-AILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---L-------ENALT   87 (258)
Q Consensus        22 KI-~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~-------~~a~~   87 (258)
                      || .|+||++.+|.+++..|++.|.  .|++.|++++.  ....++.....  .+..+.. -+|   .       .+.+-
T Consensus         3 KValITGas~GIG~aia~~la~~Ga--~V~i~~r~~~~l~~~~~~l~~~g~--~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGL--RVFVCARGEEGLRTTLKELREAGV--EADGRTCDVRSVPEIEALVAAVVERYG   78 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            56 5779999999999999999997  89999998642  22233433221  1211111 111   1       12234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhh-----CCCcEEEEecCCCCCcHHHHHHHHHHhCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC-----CPNATVNLISNPVNSTVPIAAEVFKKAGT  156 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~-----~p~a~viv~tNPvd~~~~i~t~~~~~~~~  156 (258)
                      ..|++|..||......   .+.   .+.+..|+.-...+++.+.++     ...+.+++++.-...           . +
T Consensus        79 ~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~-----------~-~  146 (257)
T d2rhca1          79 PVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGK-----------Q-G  146 (257)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGT-----------S-C
T ss_pred             CCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccc-----------c-c
Confidence            7899999999754321   122   234555655555555544322     234566665432210           0 1


Q ss_pred             CCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          157 YDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       157 ~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .|..-.++.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       147 ~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  182 (257)
T d2rhca1         147 VVHAAPYSASKHGVVGFTKALGLELA--RTGITVNAVC  182 (257)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHTT--TSEEEEEEEE
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhh--hhCcEEEEEe
Confidence            12111122221122346677888874  5667755443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.37  E-value=0.0013  Score=53.32  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=31.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++|.|+||+|.+|..++..|++.|.  +|.++|+++.
T Consensus         3 K~vlITGas~GIG~a~a~~l~~~G~--~V~~~~~~~~   37 (236)
T d1dhra_           3 RRVLVYGGRGALGSRCVQAFRARNW--WVASIDVVEN   37 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTC--EEEEEESSCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCC--EEEEEeCCcc
Confidence            5899999999999999999999997  8999998763

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.37  E-value=0.021  Score=46.65  Aligned_cols=156  Identities=13%  Similarity=0.099  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeC-CCc---hH-------hhh
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLG-QPQ---LE-------NAL   86 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~-~~d---~~-------~a~   86 (258)
                      .+.+.|+||++.+|..++..|+..|.  .|++.|+++++  ....++.....  .+..+.. -+|   .+       +.+
T Consensus         8 gK~alVTGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~l~~~~~~~~~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           8 AKTVLVTGGTKGIGHAIVEEFAGFGA--VIHTCARNEYELNECLSKWQKKGF--QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCC--ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            34788999999999999999999997  89999998642  22223332221  1211111 111   11       122


Q ss_pred             CC-CCEEEEcCCCCCCC---CCchh---hHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           87 TG-MDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        87 ~~-aDiVIi~ag~~~~~---g~~r~---d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      .+ .|++|..+|.....   ..+..   ..+..|+    ...+.+.+.+++.. .+.|++++.-...           . 
T Consensus        84 ~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~-----------~-  150 (259)
T d1xq1a_          84 GGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASG-CGNIIFMSSIAGV-----------V-  150 (259)
T ss_dssp             TTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-SCEEEEEC------------------
T ss_pred             CCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccc-ccccccccccccc-----------c-
Confidence            23 79999999864321   12222   2344444    34566666666554 4666666643321           0 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      +.|..-.++.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       151 ~~~~~~~Y~asKaal~~lt~~lA~e~~--~~gIrVN~V~  187 (259)
T d1xq1a_         151 SASVGSIYSATKGALNQLARNLACEWA--SDGIRANAVA  187 (259)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             cccccccccccccchhhhhHHHHHHhc--ccCeEEEEec
Confidence            122222223332223456677888874  4556654443

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.36  E-value=0.033  Score=45.88  Aligned_cols=157  Identities=13%  Similarity=0.038  Sum_probs=81.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCch----------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL----------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d~----------~~a~~   87 (258)
                      +.+.|+||+|.+|.+++..|+..|.  +|++.|++..+  ..+.++..... .....+. .-.+.          .+.+.
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga--~Vii~~r~~~~l~~~~~~l~~~~g-~~~~~~~~D~~~~~~v~~~~~~~~~~~g  102 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGA--QCVIASRKMDVLKATAEQISSQTG-NKVHAIQCDVRDPDMVQNTVSELIKVAG  102 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHhcC-CceEEEEecccChHHHHHHhhhhhhhcc
Confidence            3577889999999999999999997  99999998742  22223322111 1111111 11121          12235


Q ss_pred             CCCEEEEcCCCCCCCCC---c---hhhHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPGM---T---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~---~---r~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      ..|++|..+|.......   +   ..+.+..|..    .....+.........+.+++.+....           ..+ .
T Consensus       103 ~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~-----------~~~-~  170 (294)
T d1w6ua_         103 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYA-----------ETG-S  170 (294)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHH-----------HHC-C
T ss_pred             ccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchh-----------hhc-c
Confidence            79999999986443221   1   1222333332    23444444444445555555543221           111 1


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       171 ~~~~~YsasKaal~~ltk~lA~ela--~~gIrVN~I~  205 (294)
T d1w6ua_         171 GFVVPSASAKAGVEAMSKSLAAEWG--KYGMRFNVIQ  205 (294)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEE
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHh--HhCeEEEEEc
Confidence            2111122221122356677888875  5566654443

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.34  E-value=0.021  Score=47.89  Aligned_cols=112  Identities=18%  Similarity=0.294  Sum_probs=65.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-------hh----HHHHHhcCCCCCeEEEEeCCCchH-------
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-------PG----VTADISHMDTGAVVRGFLGQPQLE-------   83 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-------~g----~~~dl~~~~~~~~v~~~~~~~d~~-------   83 (258)
                      .+.|+||++.+|..++..|+..|.  .|++.|++.+       ..    ...++...... .........+.+       
T Consensus         9 valITGas~GIG~aiA~~la~~Ga--~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~v~~~~   85 (302)
T d1gz6a_           9 VVLVTGAGGGLGRAYALAFAERGA--LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGK-AVANYDSVEAGEKLVKTAL   85 (302)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCE-EEEECCCGGGHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccc-cccccchHHHHHHHHHHHH
Confidence            577889999999999999999997  8999998642       11    11122211111 111111111222       


Q ss_pred             hhhCCCCEEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEec
Q 025075           84 NALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      +.+-..|++|..||......   .+.   ...+.-|+    ...+.+.+.+++.. .+.||+++
T Consensus        86 ~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-~G~IV~is  148 (302)
T d1gz6a_          86 DTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQN-YGRIIMTA  148 (302)
T ss_dssp             HHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEC
T ss_pred             HHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCC-CcEEEEeC
Confidence            23447999999999754321   121   22344444    46677777777665 56777765

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.33  E-value=0.018  Score=47.26  Aligned_cols=114  Identities=15%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCC-CeEEEEeC-CCc---h-------Hhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTG-AVVRGFLG-QPQ---L-------ENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~-~~v~~~~~-~~d---~-------~~a~   86 (258)
                      +.+.|+||++.+|.+++..|+..|.  +|++.|+++++  ....++...... ..+..+.. -+|   .       .+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGA--NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3678889999999999999999997  89999998752  223334433211 12222211 112   1       1223


Q ss_pred             CCCCEEEEcCCCCCCCC-------Cch---hhHHHHhHH----HHHHHHHHhhhhCCCcEEEEec
Q 025075           87 TGMDLVIIPAGVPRKPG-------MTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g-------~~r---~d~~~~n~~----i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      -..|++|..||......       ++.   ...+..|+.    ..+.+.+.+++. +.++|++.|
T Consensus        84 g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S  147 (272)
T d1xkqa_          84 GKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVAS-KGEIVNVSS  147 (272)
T ss_dssp             SCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECC
T ss_pred             CCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhccccccc-CCccccccc
Confidence            47899999998754221       111   122344443    556666666553 445555544

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.32  E-value=0.007  Score=49.08  Aligned_cols=154  Identities=15%  Similarity=0.101  Sum_probs=86.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC----CCch-------HhhhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG----QPQL-------ENALTGM   89 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~----~~d~-------~~a~~~a   89 (258)
                      +++.|+||++.+|..++..|+..|.  +|++.+++.++... ...+...  ....+..    ..+.       .+.+..-
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~--~V~~~~r~~~~~~~-~~~~~~~--~~~~~~~Dls~~~~i~~~~~~i~~~~g~i   80 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGA--SLVAVDREERLLAE-AVAALEA--EAIAVVADVSDPKAVEAVFAEALEEFGRL   80 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHH-HHHTCCS--SEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHH-HHHHcCC--ceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            4788899999999999999999998  99999998642211 1111111  1111111    1112       2233579


Q ss_pred             CEEEEcCCCCCCCC---Cch---hhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           90 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        90 DiVIi~ag~~~~~g---~~r---~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      |++|..+|.+....   .+.   .+.+.-|+.-...+.+....+.. ...++++|.....-.+  .           ...
T Consensus        81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~~~--~-----------~~~  147 (241)
T d2a4ka1          81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAF--G-----------LAH  147 (241)
T ss_dssp             CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCHH--H-----------HHH
T ss_pred             cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccccc--C-----------ccc
Confidence            99999987643221   122   23456677666666666666543 3455555544332111  0           111


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ++.+.-.-..|-+.+|++++  ++.|++-++-
T Consensus       148 Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~  177 (241)
T d2a4ka1         148 YAAGKLGVVGLARTLALELA--RKGVRVNVLL  177 (241)
T ss_dssp             HHHCSSHHHHHHHHHHHHHT--TTTCEEEEEE
T ss_pred             cchhhHHHHHHHHHHHHHHh--HhCCEEeeec
Confidence            23333334567888999985  4456554443

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0092  Score=45.76  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=65.4

Q ss_pred             HhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075            9 QAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus         9 ~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      .++.|..+ ...-++++|+|- |.+|..+|..+...|.  .|..+|+++.++... ..+..   .+      ..+++++.
T Consensus        12 ~~~~r~t~~~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~--~V~v~e~dp~~al~A-~~dG~---~v------~~~~~a~~   78 (163)
T d1li4a1          12 DGIKRATDVMIAGKVAVVAGY-GDVGKGCAQALRGFGA--RVIITEIDPINALQA-AMEGY---EV------TTMDEACQ   78 (163)
T ss_dssp             HHHHHHHCCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHH-HHTTC---EE------CCHHHHTT
T ss_pred             HHHHHHhCceecCCEEEEecc-ccccHHHHHHHHhCCC--eeEeeecccchhHHh-hcCce---Ee------eehhhhhh
Confidence            45666664 223358999997 9999999999998887  999999987432221 22221   11      24578999


Q ss_pred             CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           88 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      .+|+||.+.|...-  .+            .   +.+++..+.+++.+++
T Consensus        79 ~adivvtaTGn~~v--I~------------~---eh~~~MKdgaIL~N~G  111 (163)
T d1li4a1          79 EGNIFVTTTGCIDI--IL------------G---RHFEQMKDDAIVCNIG  111 (163)
T ss_dssp             TCSEEEECSSCSCS--BC------------H---HHHTTCCTTEEEEECS
T ss_pred             hccEEEecCCCccc--hh------------H---HHHHhccCCeEEEEec
Confidence            99999888763211  11            1   2234445778888875

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.29  E-value=0.025  Score=46.13  Aligned_cols=110  Identities=18%  Similarity=0.174  Sum_probs=67.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH--HHHHhcCCCCCeEEEEe--CC--Cch-------HhhhC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL--GQ--PQL-------ENALT   87 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~--~~dl~~~~~~~~v~~~~--~~--~d~-------~~a~~   87 (258)
                      +.+.|+||++.+|.+++..|+..|.  .|++.|+++++..  ..++..     ....+.  .+  .+.       .+.+-
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGA--RVVLADVLDEEGAATARELGD-----AARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTTGG-----GEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhCC-----ceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            4789999999999999999999997  8999999865222  222221     111111  11  111       12245


Q ss_pred             CCCEEEEcCCCCCCCC---Cc---hhhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           88 GMDLVIIPAGVPRKPG---MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~---r~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      ..|++|..||......   .+   -.+.+..|+    ...+.+.+.+++.. .+.||+++.
T Consensus        79 ~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~-~G~II~isS  138 (254)
T d1hdca_          79 SVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAG-GGSIVNISS  138 (254)
T ss_dssp             CCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECC
T ss_pred             CccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcC-CCeeccccc
Confidence            7999999998753221   11   122344454    35566666666554 577777764

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.058  Score=44.86  Aligned_cols=159  Identities=11%  Similarity=0.079  Sum_probs=86.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCC---CCCeEEEEeC-CCc---hH-----
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMD---TGAVVRGFLG-QPQ---LE-----   83 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~---~~~~v~~~~~-~~d---~~-----   83 (258)
                      -+.+.+.|+||++.+|.+++..|+..|.  .|++.|++.++  ..+.++....   ....+..+.. -+|   .+     
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga--~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~   87 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS--NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKS   87 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHH
Confidence            3445788999999999999999999997  89999998652  2233343211   1112222211 112   11     


Q ss_pred             --hhhCCCCEEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHH
Q 025075           84 --NALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF  151 (258)
Q Consensus        84 --~a~~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~  151 (258)
                        +.+..-|++|..||......   .+.   ...+..|+    .+.+.+++.+.+... +.+++++.....         
T Consensus        88 ~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~-g~Ii~~ss~~~~---------  157 (297)
T d1yxma1          88 TLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHG-GSIVNIIVPTKA---------  157 (297)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHC-EEEEEECCCCTT---------
T ss_pred             HHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhccccc-cccccccccccc---------
Confidence              22357899999998643221   111   22344454    345666666665543 445555543221         


Q ss_pred             HHhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          152 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       152 ~~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                          .+|..-..+.+.-.-..|-+.+|.+++  ++.|++-.+-
T Consensus       158 ----~~~~~~~Y~asKaal~~ltk~lA~el~--~~gIrVN~I~  194 (297)
T d1yxma1         158 ----GFPLAVHSGAARAGVYNLTKSLALEWA--CSGIRINCVA  194 (297)
T ss_dssp             ----CCTTCHHHHHHHHHHHHHHHHHHHHTG--GGTEEEEEEE
T ss_pred             ----cccccccchhHHHHHHHHHHHHHHHhc--ccCceEEEee
Confidence                122211112222122456677888874  5566654443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.28  E-value=0.0016  Score=52.46  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |||+|||| |..|.+.|+.|.+.|+  +|.+++...
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~--~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGT--DAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            68999998 9999999999999998  899999754

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.27  E-value=0.02  Score=46.63  Aligned_cols=155  Identities=14%  Similarity=0.095  Sum_probs=84.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEe----CCCchH-------hhhC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFL----GQPQLE-------NALT   87 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~----~~~d~~-------~a~~   87 (258)
                      .+.|+||++.+|.+++..|++.|.  +|++.|+++. ..  ...++.... ...+..+.    ...+.+       +.+-
T Consensus         6 ~alITGas~GIG~aiA~~la~~Ga--~V~~~~r~~~~~~~~~~~~~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   82 (260)
T d1x1ta1           6 VAVVTGSTSGIGLGIATALAAQGA--DIVLNGFGDAAEIEKVRAGLAAQH-GVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEECCSCHHHHHHHHHHHHHHH-TSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCcHHHHHHHHHHHHHhc-CCcEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            567889999999999999999997  8999998753 11  111221110 00111111    011122       2234


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .-|++|..||......   .+.   .+.+..|    ....+...+.+++.. .+.||+++.....           . +.
T Consensus        83 ~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~-~G~Iv~isS~~~~-----------~-~~  149 (260)
T d1x1ta1          83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQG-FGRIINIASAHGL-----------V-AS  149 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEECCGGGT-----------S-CC
T ss_pred             CCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcC-CceEeecccccce-----------e-cc
Confidence            7999999999754321   121   1234444    445567777777654 5677777643321           0 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       150 ~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~I~  184 (260)
T d1x1ta1         150 ANKSAYVAAKHGVVGFTKVTALETA--GQGITANAIC  184 (260)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             CCcchhhhhhhhHHHhHHHHHHHhc--hhCcEEEEEe
Confidence            2111222222122346677888875  6667755444

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.27  E-value=0.04  Score=44.86  Aligned_cols=160  Identities=11%  Similarity=0.031  Sum_probs=84.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCC--Cch-------HhhhC-
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQ--PQL-------ENALT-   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~--~d~-------~~a~~-   87 (258)
                      .+++.|+||++.+|..++..|++.|.  +|++.|+++++.  ...++.........-....+  .++       .+.+. 
T Consensus         6 gK~alITGas~GIG~aia~~la~~G~--~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g   83 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGLGA--RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   83 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            34799999999999999999999997  899999987421  12223222211111111111  111       12222 


Q ss_pred             CCCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           88 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .-|++|.++|......   .+.   ...+..|    ....+.+.+.+.+. +.+.+++++-....           . +.
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-~~g~ii~isS~~~~-----------~-~~  150 (258)
T d1ae1a_          84 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKAS-QNGNVIFLSSIAGF-----------S-AL  150 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TSEEEEEECCGGGT-----------S-CC
T ss_pred             CcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccc-cccccccccccccc-----------c-cc
Confidence            3789999988654321   121   1223333    34455566666554 45666666644331           1 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeE--EEEecC
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDV--PVVGGH  196 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~--~v~G~h  196 (258)
                      |..-.++.+.-.-..|-+.+|++++  +..|++  ..-|-.
T Consensus       151 ~~~~~Y~~sK~al~~lt~~lA~el~--~~gIrvN~I~PG~i  189 (258)
T d1ae1a_         151 PSVSLYSASKGAINQMTKSLACEWA--KDNIRVNSVAPGVI  189 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTEEEEEEEECSB
T ss_pred             ccchhHHHHHHHHHHHHHHHHHhcC--cCcEEEEEEeeCcc
Confidence            2222222221122346677888885  455654  444443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.26  E-value=0.0046  Score=44.96  Aligned_cols=42  Identities=17%  Similarity=0.189  Sum_probs=34.3

Q ss_pred             HhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           12 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        12 ~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +......+..+|+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        22 ~~~~~~~~~k~vvViGg-G~iG~E~A~~l~~~g~--~Vtlie~~~   63 (123)
T d1nhpa2          22 KQKTVDPEVNNVVVIGS-GYIGIEAAEAFAKAGK--KVTVIDILD   63 (123)
T ss_dssp             HHHHTCTTCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             HHHhhccCCCEEEEECC-hHHHHHHHHHhhccce--EEEEEEecC
Confidence            33333445569999998 9999999999999997  999998864

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.23  E-value=0.0078  Score=51.62  Aligned_cols=71  Identities=18%  Similarity=0.338  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ...++|||+ |..+...+..+.. .+ +++|.+||++++..  .+.++... ....+..   ..++++++++||+|+.+.
T Consensus       128 a~~l~iiG~-G~QA~~~~~a~~~v~~-i~~V~v~~r~~~~~~~~~~~l~~~-~g~~v~~---~~s~~eav~~ADIi~t~T  201 (340)
T d1x7da_         128 ARKMALIGN-GAQSEFQALAFHKHLG-IEEIVAYDTDPLATAKLIANLKEY-SGLTIRR---ASSVAEAVKGVDIITTVT  201 (340)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHHSC-CCEEEEECSSHHHHHHHHHHHTTC-TTCEEEE---CSSHHHHHTTCSEEEECC
T ss_pred             CceEEEEcc-cHHHHHHHHHHhhhcc-eeeeEEEecChHHHHHHHHhhhhc-cCCCcee---cCCHHHHHhcCCceeecc
Confidence            358999997 9999877765543 45 68999999987532  33344332 2223332   457899999999998754

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.027  Score=45.39  Aligned_cols=160  Identities=13%  Similarity=0.170  Sum_probs=84.5

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCC---------chHhhhC
Q 025075           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQP---------QLENALT   87 (258)
Q Consensus        20 ~~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~---------d~~~a~~   87 (258)
                      .+++.|+||+|  .+|.+++..|++.|.  +|++.|+++. .....++..............+.         +..+...
T Consensus         5 gK~~lITGass~~GIG~aiA~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           5 GKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TCEEEECCCCSTTSHHHHHHHHHHHTTC--EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCchhHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            34789999866  588999999999997  8999999865 22222222221111111111111         1112234


Q ss_pred             CCCEEEEcCCCCCCCCC-------chhh----HHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhC
Q 025075           88 GMDLVIIPAGVPRKPGM-------TRDD----LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG  155 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g~-------~r~d----~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~  155 (258)
                      ..|++|..++.......       ...+    .+..|......+.+.+..+- +...++++|.....           . 
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~-----------~-  150 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAE-----------R-  150 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGT-----------S-
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhc-----------c-
Confidence            56788888765322111       0111    22344445555555555543 44556666543220           1 


Q ss_pred             CCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEec
Q 025075          156 TYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGG  195 (258)
Q Consensus       156 ~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G~  195 (258)
                      +.|..-.++.+.-.-..+-+.+|++++  ++.|++-.+-.
T Consensus       151 ~~~~~~~Y~~sKaal~~ltr~lA~el~--~~gIrVN~I~P  188 (258)
T d1qsga_         151 AIPNYNVMGLAKASLEANVRYMANAMG--PEGVRVNAISA  188 (258)
T ss_dssp             BCTTTTHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEEE
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhC--ccCceeecccc
Confidence            122222233322223457788999986  67788766653

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.15  E-value=0.074  Score=43.30  Aligned_cols=157  Identities=17%  Similarity=0.108  Sum_probs=81.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hHHHHHhcCCCCCeEEEEe-CCCc----------hHhhh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL-GQPQ----------LENAL   86 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~~~dl~~~~~~~~v~~~~-~~~d----------~~~a~   86 (258)
                      +++.|+||++.+|..++..|+..|.  +|++.|++..+   ....++.....  .+..+. ...|          ..+.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga--~Vvi~~~~~~~~~~~~~~~~~~~g~--~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGC--KVIVNYANSTESAEEVVAAIKKNGS--DAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHTTC--CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCchHHHHHHHHHHHhhCC--ceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            5788999999999999999999997  89999987641   11222222211  111111 1112          12334


Q ss_pred             CCCCEEEEcCCCCCCCC---Cc---hhhHHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCCCC
Q 025075           87 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDP  159 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~---r~d~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~  159 (258)
                      -.-|++|..+|......   .+   -.+.+..|+.-...+.+.+..+- .++.+++++.-...           ....+.
T Consensus        95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~-----------~~~~~~  163 (272)
T d1g0oa_          95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ-----------AKAVPK  163 (272)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT-----------CSSCSS
T ss_pred             CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc-----------cccccc
Confidence            57899999988653322   11   12334445544444444444432 34555555432221           011111


Q ss_pred             CcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          160 KKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       160 ~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      .-.++.+.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       164 ~~~Y~asKaal~~ltk~lA~e~~--~~gIrVN~I~  196 (272)
T d1g0oa_         164 HAVYSGSKGAIETFARCMAIDMA--DKKITVNVVA  196 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhc--hhCeEEEEEc
Confidence            11122222122346677888885  4556544333

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.12  E-value=0.016  Score=46.20  Aligned_cols=74  Identities=14%  Similarity=0.045  Sum_probs=43.2

Q ss_pred             CCCCeEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCChhHHH-HHhcCCCCCeEEEEeCCCchHhhhC--CCCEEE
Q 025075           18 AAGFKVAILGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTA-DISHMDTGAVVRGFLGQPQLENALT--GMDLVI   93 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~-~~a~~L~~~~~~~ei~L~D~~~~~g~~~-dl~~~~~~~~v~~~~~~~d~~~a~~--~aDiVI   93 (258)
                      .++.||+|||+ |.+|. +++..+...+.+.=+.++|+++++.... +..... ...+..   .+|+++.++  +.|+|+
T Consensus        31 ~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~-~~~~~~---~~d~~ell~~~~iD~V~  105 (221)
T d1h6da1          31 DRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVD-PRKIYD---YSNFDKIAKDPKIDAVY  105 (221)
T ss_dssp             CCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCC-GGGEEC---SSSGGGGGGCTTCCEEE
T ss_pred             CCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccc-cccccc---cCchhhhcccccceeee
Confidence            34569999998 99997 4556665544443344899887533221 111111 112221   246667675  588999


Q ss_pred             EcC
Q 025075           94 IPA   96 (258)
Q Consensus        94 i~a   96 (258)
                      ++.
T Consensus       106 I~t  108 (221)
T d1h6da1         106 IIL  108 (221)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            875

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.012  Score=46.35  Aligned_cols=102  Identities=16%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC---------------------
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRGFLG---------------------   78 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~-~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~---------------------   78 (258)
                      +||.|||. |.-|..++..+...++- -+.+.+|.|.     .+|.+.....++.  .+                     
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~a~~ki~--iG~~~t~G~G~g~~p~~g~~aa~   72 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDL-----QVLEASNADVKIQ--IGENITRGLGAGGRPEIGEQAAL   72 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCH-----HHHHTCCCSEEEE--CCTTTTTTSCCTTCHHHHHHHHH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCH-----HHHhcCCcceEEe--cccccCCCcccccCchhhHhHHH
Confidence            58999998 99999999888776653 2778888764     2233322211111  11                     


Q ss_pred             --CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           79 --QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        79 --~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                        ...+.+.++++|+||++||.....|       ..-.+++.++++...   . -++-++|=|-.
T Consensus        73 e~~~~I~~~l~~~d~vfi~AGlGGgTG-------tgaapviA~~ake~g---~-lvv~ivtlPF~  126 (194)
T d1w5fa1          73 ESEEKIREVLQDTHMVFITAGFGGGTG-------TGASPVIAKIAKEMG---I-LTVAIVTTPFY  126 (194)
T ss_dssp             HTHHHHHHHTTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHTT---C-EEEEEEEECCG
T ss_pred             HHHHHHHHHhcCCCeEEEEEecCCCcc-------cchHHHHHHHHHHcC---C-ceEEEEeechh
Confidence              1145667899999999998654332       223556566665532   1 24455666765

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.08  E-value=0.0094  Score=49.28  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=31.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.+.|+||++.+|..++..|+..|.  +|++.|++++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga--~V~i~~r~~~   40 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGA--KVAVLDKSAE   40 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESCHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHH
Confidence            3688999999999999999999997  9999999864

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.08  E-value=0.0026  Score=48.98  Aligned_cols=36  Identities=22%  Similarity=0.287  Sum_probs=31.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.||+|||| |..|...|..|.+.|+ ++|.++|....
T Consensus         4 ~~kVaIIGa-GpaGl~aA~~l~~~G~-~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGA-GPASISCASFLARLGY-SDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECC-SHHHHHHHHHHHHTTC-CCEEEEESSSS
T ss_pred             CCEEEEECC-hHHHHHHHHHHHHCCC-CeEEEEEecCc
Confidence            359999998 9999999999999987 36999998753

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.08  E-value=0.017  Score=44.39  Aligned_cols=36  Identities=19%  Similarity=0.146  Sum_probs=30.4

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .-+|.|+|| |.+|...+..+...|. ..|+..|.+++
T Consensus        29 G~~VlV~Ga-G~iG~~~~~~ak~~Ga-~~Vi~~~~~~~   64 (182)
T d1vj0a2          29 GKTVVIQGA-GPLGLFGVVIARSLGA-ENVIVIAGSPN   64 (182)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTB-SEEEEEESCHH
T ss_pred             CCEEEEECC-Cccchhheeccccccc-ccccccccccc
Confidence            358999998 9999998888888774 48999999775

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.05  E-value=0.0038  Score=50.30  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |+||+|||| |..|.++|..|.+.|+ ..|.+++...
T Consensus         1 ~~~V~IvGa-G~aGl~~A~~L~~~Gi-~~V~V~Er~~   35 (288)
T d3c96a1           1 PIDILIAGA-GIGGLSCALALHQAGI-GKVTLLESSS   35 (288)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCC-CeEEEEeCCC
Confidence            579999998 9999999999999985 3789999865

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.03  E-value=0.0036  Score=52.90  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++||+|||| |.-|.+.|..|++.|.  +|.++|.+..
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~--~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGH--QVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTC--EEEEEESSSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCC--CEEEEECCCC
Confidence            3569999998 9999999999999887  9999998764

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.031  Score=38.69  Aligned_cols=73  Identities=18%  Similarity=0.387  Sum_probs=50.3

Q ss_pred             CCCCeEEEEcCCCchH-HHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           18 AAGFKVAILGAAGGIG-QPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG-~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      .+.+||-+||- |.+| +++|..|..+|+  +|.-.|..... ...+|.+..  ..+  +.+ ++ .+.++++|+||.+.
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~-~~~~L~~~G--i~v--~~g-~~-~~~i~~~d~vV~S~   75 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGY--QISGSDIADGV-VTQRLAQAG--AKI--YIG-HA-EEHIEGASVVVVSS   75 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTC--EEEEEESCCSH-HHHHHHHTT--CEE--EES-CC-GGGGTTCSEEEECT
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCC--EEEEEeCCCCh-hhhHHHHCC--CeE--EEC-Cc-cccCCCCCEEEECC
Confidence            34569999998 7778 667999999998  99999987642 122344332  122  222 23 35689999999998


Q ss_pred             CCCC
Q 025075           97 GVPR  100 (258)
Q Consensus        97 g~~~  100 (258)
                      ++|.
T Consensus        76 AI~~   79 (96)
T d1p3da1          76 AIKD   79 (96)
T ss_dssp             TSCT
T ss_pred             CcCC
Confidence            7763

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.018  Score=39.47  Aligned_cols=69  Identities=25%  Similarity=0.298  Sum_probs=48.6

Q ss_pred             CeEEEEcCCCchHH-HHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           21 FKVAILGAAGGIGQ-PLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        21 ~KI~IIGa~G~VG~-~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      |||-+||- |.+|. ++|..|.++|+  +|.-.|..+... ...|.....  .+  +.+ .+ .+.++++|+||.+.+++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~--~VsGSD~~~~~~-t~~L~~~Gi--~i--~~g-h~-~~~i~~~d~vV~SsAI~   71 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGN--DVYGSNIEETER-TAYLRKLGI--PI--FVP-HS-ADNWYDPDLVIKTPAVR   71 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTC--EEEEECSSCCHH-HHHHHHTTC--CE--ESS-CC-TTSCCCCSEEEECTTCC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCC--eEEEEeCCCChh-HHHHHHCCC--eE--Eee-ec-ccccCCCCEEEEecCcC
Confidence            79999998 88885 67889999998  999999876422 223444332  22  222 33 35689999999998776

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.95  E-value=0.034  Score=45.28  Aligned_cols=156  Identities=13%  Similarity=0.136  Sum_probs=80.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCC-CCeEEEEeC-CCc---hH-------hhhC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDT-GAVVRGFLG-QPQ---LE-------NALT   87 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~-~~~v~~~~~-~~d---~~-------~a~~   87 (258)
                      .+.|+||++.+|..++..|+..|.  +|++.|++++.  ....++..... ...+..+.. -+|   .+       +.+-
T Consensus         7 valVTGas~GIG~aia~~la~~Ga--~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   84 (264)
T d1spxa_           7 VAIITGSSNGIGRATAVLFAREGA--KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFG   84 (264)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             EEEEeCcCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            466779999999999999999997  89999998652  22333433221 112222211 111   11       2234


Q ss_pred             CCCEEEEcCCCCCCCC-------Cchh---hHHHHhHH----HHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHH
Q 025075           88 GMDLVIIPAGVPRKPG-------MTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKK  153 (258)
Q Consensus        88 ~aDiVIi~ag~~~~~g-------~~r~---d~~~~n~~----i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~  153 (258)
                      ..|++|..+|......       .+..   ..+..|+.    ..+.+.+.+++. ..++|++.|--...           
T Consensus        85 ~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~-~g~iI~~~S~~~~~-----------  152 (264)
T d1spxa_          85 KLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSST-KGEIVNISSIASGL-----------  152 (264)
T ss_dssp             CCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEECCTTSSS-----------
T ss_pred             CCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccc-cCcceeeeeecccc-----------
Confidence            7999999998642111       1211   23344443    556667766554 34455544422221           


Q ss_pred             hCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          154 AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       154 ~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                       .+.|..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       153 -~~~~~~~~Y~asKaal~~lt~~lA~el~--~~gIrVN~V~  190 (264)
T d1spxa_         153 -HATPDFPYYSIAKAAIDQYTRNTAIDLI--QHGIRVNSIS  190 (264)
T ss_dssp             -SCCTTSHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             -ccCCCchhhhhhhhhHHHHHHHHHHHhc--ccCeEEEEEe
Confidence             0112111222222122346677888874  5556654443

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.94  E-value=0.0038  Score=49.96  Aligned_cols=33  Identities=30%  Similarity=0.475  Sum_probs=30.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +||+|||| |.-|.+.|+.|++.|+  +|.++|...
T Consensus         2 KkV~IIGa-G~aGL~aA~~La~~G~--~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGA-GVSGLAAAYKLKIHGL--NVTVFEAEG   34 (373)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHTTSC--EEEEECSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            48999998 9999999999999998  999999754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.053  Score=43.38  Aligned_cols=103  Identities=19%  Similarity=0.192  Sum_probs=66.9

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----------hhHHHHHhcCCCCCeEEEEeCCCchHhhh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----------PGVTADISHMDTGAVVRGFLGQPQLENAL   86 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----------~g~~~dl~~~~~~~~v~~~~~~~d~~~a~   86 (258)
                      +.+..||.+.|| |..|..++..|...+. +++.++|++--          .....++.+......     ...++.+++
T Consensus        23 ~l~d~riv~~GA-GsAg~gia~~l~~~~~-~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~l   95 (222)
T d1vl6a1          23 KIEEVKVVVNGI-GAAGYNIVKFLLDLGV-KNVVAVDRKGILNENDPETCLNEYHLEIARITNPER-----LSGDLETAL   95 (222)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHTC-CEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTC-----CCSCHHHHH
T ss_pred             ChhhcEEEEECh-HHHHHHHHHHHHHhcc-cceEeecceeEEEcCcccccccHHHHHHHhhhcchh-----hhcchHhhc
Confidence            555579999998 9999999998887664 69999998631          111122222211111     124678899


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcH
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV  144 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~  144 (258)
                      +++++++-+..    +|.-+.              +.+.+.++..+|+-.|||..-..
T Consensus        96 ~g~~~~~g~~~----~~~~~~--------------e~m~~~~~rPIIFpLSNPt~~~e  135 (222)
T d1vl6a1          96 EGADFFIGVSR----GNILKP--------------EWIKKMSRKPVIFALANPVPEID  135 (222)
T ss_dssp             TTCSEEEECSC----SSCSCH--------------HHHTTSCSSCEEEECCSSSCSSC
T ss_pred             cCcceeccccc----cccccH--------------HHHhhcCCCCEEEecCCCccchh
Confidence            99998776642    232111              23566678889999999976543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.85  E-value=0.005  Score=51.92  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=31.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++||+|||| |..|.+.|..|+..+...+|++++.+..
T Consensus         4 ~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            458999998 9999999998887776569999998754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.80  E-value=0.0041  Score=47.24  Aligned_cols=106  Identities=19%  Similarity=0.246  Sum_probs=61.8

Q ss_pred             HhHHhhcCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhh--
Q 025075            9 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENA--   85 (258)
Q Consensus         9 ~~~~~~~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a--   85 (258)
                      ++.++. +..+..+|.|+|+ |.+|...+..+...|.  +++.+|.++.+ ..+.++.   ....+.  ....|..+.  
T Consensus        18 ~al~~~-~~~~g~~VlV~Ga-G~vG~~~~~~ak~~G~--~Vi~~~~~~~~~~~a~~~G---a~~~i~--~~~~~~~~~~~   88 (166)
T d1llua2          18 KGLKQT-NARPGQWVAISGI-GGLGHVAVQYARAMGL--HVAAIDIDDAKLELARKLG---ASLTVN--ARQEDPVEAIQ   88 (166)
T ss_dssp             HHHHHH-TCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESCHHHHHHHHHTT---CSEEEE--TTTSCHHHHHH
T ss_pred             HHHHHh-CCCCCCEEEEeec-cccHHHHHHHHHHcCC--ccceecchhhHHHhhhccC---cccccc--ccchhHHHHHH
Confidence            344443 3445568999998 9999999988888884  89999987642 2222222   111111  112333333  


Q ss_pred             --hCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           86 --LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        86 --~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                        ..+.|.+|++.+.+                  ..+-..++-..|.+.+++++.|-+
T Consensus        89 ~~~~g~~~~i~~~~~~------------------~~~~~~~~~l~~~G~iv~~G~~~~  128 (166)
T d1llua2          89 RDIGGAHGVLVTAVSN------------------SAFGQAIGMARRGGTIALVGLPPG  128 (166)
T ss_dssp             HHHSSEEEEEECCSCH------------------HHHHHHHTTEEEEEEEEECCCCSS
T ss_pred             HhhcCCcccccccccc------------------hHHHHHHHHhcCCcEEEEEEecCC
Confidence              34667777775421                  112223444458899988876543

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.79  E-value=0.044  Score=44.29  Aligned_cols=153  Identities=8%  Similarity=0.029  Sum_probs=83.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchH-------hhhCCCCEEE
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLE-------NALTGMDLVI   93 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~-------~a~~~aDiVI   93 (258)
                      ...|+||++.+|..++..|++.|.  .|++.|++.+.. +...+........+.   ...+.+       +.+-.-|++|
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga--~V~i~~r~~~~~~~~~~~~~~~~~~dv~---~~~~~~~~~~~~~~~~G~iDiLV   76 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH--TVACHDESFKQKDELEAFAETYPQLKPM---SEQEPAELIEAVTSAYGQVDVLV   76 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC--EEEECCGGGGSHHHHHHHHHHCTTSEEC---CCCSHHHHHHHHHHHHSCCCEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHhhhCcEEEeccC---CHHHHHHHHHHHHHHcCCCCEEE
Confidence            367999999999999999999997  899999876421 111111111112221   122322       3345799999


Q ss_pred             EcCCCCCCCC----Cchhh---HHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcE
Q 025075           94 IPAGVPRKPG----MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL  162 (258)
Q Consensus        94 i~ag~~~~~g----~~r~d---~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kv  162 (258)
                      ..||.....+    .+..|   .+..|    ....+.+.+.+++.. .+.||++|.-...           . +.|..-.
T Consensus        77 nNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~-~G~IV~isS~~~~-----------~-~~~~~~~  143 (252)
T d1zmta1          77 SNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRK-SGHIIFITSATPF-----------G-PWKELST  143 (252)
T ss_dssp             EECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CCEEEEECCSTTT-----------S-CCTTCHH
T ss_pred             ECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccc-cceeecccccccc-----------c-ccccccc
Confidence            9887643222    12222   22333    446677788777665 5666666643321           0 1121112


Q ss_pred             EEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          163 LGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       163 iG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ++.+.-.-..|-+.+|++++  +..|++-.+-
T Consensus       144 Y~asKaal~~lt~~lA~ela--~~gIrVN~I~  173 (252)
T d1zmta1         144 YTSARAGACTLANALSKELG--EYNIPVFAIG  173 (252)
T ss_dssp             HHHHHHHHHHHHHHHHHHHG--GGTCCEEEEE
T ss_pred             cccccccHHHHHHHHHHHhc--ccCcEEEEEe
Confidence            22222122346677788875  4555544443

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.0051  Score=41.37  Aligned_cols=35  Identities=17%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +++|+|+|+ |+.|+.++......|+  +++.+|.+..
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~--~v~vldp~~~   35 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGI--AVWPVGLDAE   35 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTE--EEEEECTTSC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCC--EEEEEcCCCC
Confidence            358999998 9999999999988888  9999998653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=95.67  E-value=0.039  Score=44.39  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=85.1

Q ss_pred             e-EEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEe-CCCch----------
Q 025075           22 K-VAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL----------   82 (258)
Q Consensus        22 K-I~IIGa~G~VG~~~a~~L~~~~~~-----~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~-~~~d~----------   82 (258)
                      + |.|+||++.+|.+++..|++.|.-     ..|+++|++++.  ....++.....  ....+. .-+|.          
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~--~~~~~~~Dvt~~~~v~~~~~~~   79 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGA--LTDTITADISDMADVRRLTTHI   79 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTC--EEEEEECCTTSHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCC--cEEEEEecCCCHHHHHHHHHHH
Confidence            5 467899999999999999987741     248999988652  22333433221  222111 11121          


Q ss_pred             HhhhCCCCEEEEcCCCCCCCC---Cch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHH
Q 025075           83 ENALTGMDLVIIPAGVPRKPG---MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFK  152 (258)
Q Consensus        83 ~~a~~~aDiVIi~ag~~~~~g---~~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~  152 (258)
                      .+.+-..|++|..||......   .+.   ...+..|+    .+.+.+.+.+++. ..+.+++++.-...          
T Consensus        80 ~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~-~~G~Ii~isS~~~~----------  148 (240)
T d2bd0a1          80 VERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQ-HSGHIFFITSVAAT----------  148 (240)
T ss_dssp             HHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCGGGT----------
T ss_pred             HHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhc-CCCceEEEechhhc----------
Confidence            223357999999998754321   111   22344443    4567777777665 35677777643321          


Q ss_pred             HhCCCCCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          153 KAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       153 ~~~~~~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                       . ++|..-.++.+.-.-..|-+.+|.+++  +..|++-.+-
T Consensus       149 -~-~~~~~~~Y~asK~al~~lt~~la~el~--~~gIrvn~i~  186 (240)
T d2bd0a1         149 -K-AFRHSSIYCMSKFGQRGLVETMRLYAR--KCNVRITDVQ  186 (240)
T ss_dssp             -S-CCTTCHHHHHHHHHHHHHHHHHHHHHT--TTTEEEEEEE
T ss_pred             -C-CCCCChHHHHHHHHHHHHHHHHHHHhC--cCCeEEEEee
Confidence             1 122222222222222346667777774  5567765444

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.64  E-value=0.0054  Score=47.71  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=29.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |||+|||| |++|..+|..|...+.-.+|.+++.+.
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999998 999999999887755445899998754

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.007  Score=48.95  Aligned_cols=35  Identities=23%  Similarity=0.235  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +..||+|||| |.-|.+.|+.|.+.|+  +|.+++...
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~--~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGM--DVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCC--CEEEEeCCC
Confidence            4468999998 9999999999999998  899998755

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0054  Score=49.80  Aligned_cols=34  Identities=26%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||.|+|+ |.+|++++..|+..|+ ++|.|+|-|.
T Consensus        31 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~   64 (247)
T d1jw9b_          31 SRVLIVGL-GGLGCAASQYLASAGV-GNLTLLDFDT   64 (247)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECCCB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHcCC-CeEEEECCcc
Confidence            38999998 9999999999999986 7999999764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.54  E-value=0.028  Score=44.66  Aligned_cols=104  Identities=17%  Similarity=0.281  Sum_probs=60.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCC-cEEEEEeCCCChhHHHHHhcCCCCCeEEE-------E--------------eC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLV-SVLHLYDVVNTPGVTADISHMDTGAVVRG-------F--------------LG   78 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~-~ei~L~D~~~~~g~~~dl~~~~~~~~v~~-------~--------------~~   78 (258)
                      .||.|||. |.-|..++..+...++- -+.+.+|.|.     .+|.+.....++..       .              ..
T Consensus        16 ~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~-----~~L~~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~   89 (209)
T d2vapa1          16 AKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDA-----QQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKES   89 (209)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBH-----HHHHTSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHT
T ss_pred             CcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCH-----HHHhcCCcchhcccccccccccccccchHHHHHHHHHH
Confidence            59999998 99999999988876653 2777788764     22333321111110       0              00


Q ss_pred             CCchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           79 QPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        79 ~~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ...+.+.++++|+||++||.....|       ..-.+++.++++..   + .-++-++|=|-.
T Consensus        90 ~~~I~~~l~~~d~vfi~AGlGGGTG-------sgaapvia~~ake~---g-~lvv~ivtlPF~  141 (209)
T d2vapa1          90 AEEIKAAIQDSDMVFITCGLGGGTG-------TGSAPVVAEISKKI---G-ALTVAVVTLPFV  141 (209)
T ss_dssp             HHHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---T-CEEEEEEEECCG
T ss_pred             HHHHHHhccCCCEEEEEEeCCCCcc-------ccHHHHHHHHHHHc---C-CcEEEEEecchh
Confidence            0135567899999999998654332       22255555555543   2 123445666665

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.54  E-value=0.011  Score=42.23  Aligned_cols=36  Identities=14%  Similarity=0.157  Sum_probs=31.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .|.||+|||| |++|.-+|..|...|.  +|.+++..+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGT--KVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             cCCeEEEECC-Cccceeeeeeeccccc--EEEEEEecce
Confidence            3469999998 9999999999999987  9999997653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.53  E-value=0.01  Score=42.64  Aligned_cols=34  Identities=24%  Similarity=0.254  Sum_probs=30.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.||+|||| |.+|.-+|..|...|.  +|.++++.+
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGI--DSYIFARGN   55 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccc--cceeeehhc
Confidence            469999998 9999999999998887  999999754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.50  E-value=0.029  Score=42.78  Aligned_cols=98  Identities=15%  Similarity=0.260  Sum_probs=58.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhhC-----CCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALT-----GMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-----~aD   90 (258)
                      ..+..+|.|+|+ |.+|...+..+...|. ..|...|.++.+ ..+.++.-   . .+-. ....|+.+.++     +.|
T Consensus        26 ~~~g~~VlI~G~-G~iG~~~~~~ak~~g~-~~v~~~~~~~~k~~~a~~~Ga---~-~~i~-~~~~~~~~~i~~~t~gg~D   98 (174)
T d1f8fa2          26 VTPASSFVTWGA-GAVGLSALLAAKVCGA-SIIIAVDIVESRLELAKQLGA---T-HVIN-SKTQDPVAAIKEITDGGVN   98 (174)
T ss_dssp             CCTTCEEEEESC-SHHHHHHHHHHHHHTC-SEEEEEESCHHHHHHHHHHTC---S-EEEE-TTTSCHHHHHHHHTTSCEE
T ss_pred             CCCCCEEEEeCC-CHHHhhhhhccccccc-ceeeeeccHHHHHHHHHHcCC---e-EEEe-CCCcCHHHHHHHHcCCCCc
Confidence            444558999998 9999999988877765 477888887642 22333321   1 1111 12234444332     489


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +||.+.|.+               ..+...   ++-..|.+.+++++.|
T Consensus        99 ~vid~~G~~---------------~~~~~~---~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2          99 FALESTGSP---------------EILKQG---VDALGILGKIAVVGAP  129 (174)
T ss_dssp             EEEECSCCH---------------HHHHHH---HHTEEEEEEEEECCCC
T ss_pred             EEEEcCCcH---------------HHHHHH---HhcccCceEEEEEeec
Confidence            999998632               111222   2233588888887643

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=95.49  E-value=0.013  Score=47.63  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             CCCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~--VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      +.+++.|+||+|.  +|.+++..|+..|.  +|+|.+++..
T Consensus         5 ~gK~~lItGaag~~GIG~aiA~~la~~Ga--~Vil~~~~~~   43 (268)
T d2h7ma1           5 DGKRILVSGIITDSSIAFHIARVAQEQGA--QLVLTGFDRL   43 (268)
T ss_dssp             TTCEEEECCCSSTTCHHHHHHHHHHHTTC--EEEEEECSCH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHcCC--EEEEEeCChH
Confidence            3458999997664  99999999999997  8999998875

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.48  E-value=0.0045  Score=50.75  Aligned_cols=33  Identities=27%  Similarity=0.316  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||+|||| |.+|.++|..|.+.|+  ++.++|..+
T Consensus         3 ~~V~IvGa-Gp~Gl~~A~~L~~~G~--~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGA-GPSGLLLGQLLHKAGI--DNVILERQT   35 (292)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--CEEEEeCCC
Confidence            37999998 9999999999999998  899999875

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.47  E-value=0.011  Score=42.69  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+|+|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        31 ~~vvIIGg-G~iG~E~A~~l~~~g~--~Vtli~~~~   63 (121)
T d1d7ya2          31 SRLLIVGG-GVIGLELAATARTAGV--HVSLVETQP   63 (121)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CeEEEECc-chhHHHHHHHhhcccc--eEEEEeecc
Confidence            58999998 9999999999999987  999999865

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.45  E-value=0.0058  Score=49.53  Aligned_cols=32  Identities=19%  Similarity=0.361  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .|+|||| |-+|.++|+.|+++|.  +|+++|.++
T Consensus         6 DvvIIGa-Gi~Gls~A~~La~~G~--~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGG-GIIGSAIAYYLAKENK--NTALFESGT   37 (276)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            3999998 9999999999999997  899999864

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.45  E-value=0.081  Score=42.67  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=28.6

Q ss_pred             CeEEEE-cCCCchHHHHHHHHHh---CCCCcEEEEEeCCCC
Q 025075           21 FKVAIL-GAAGGIGQPLAMLMKI---NPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~II-Ga~G~VG~~~a~~L~~---~~~~~ei~L~D~~~~   57 (258)
                      .||+|| ||++.+|..++..|++   .|.  .|++.|++++
T Consensus         6 gKvalITGas~GIG~aiA~~lA~~~~~G~--~Vv~~~r~~~   44 (259)
T d1oaaa_           6 CAVCVLTGASRGFGRALAPQLARLLSPGS--VMLVSARSES   44 (259)
T ss_dssp             SEEEEESSCSSHHHHHHHHHHHTTBCTTC--EEEEEESCHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHhcccCCC--EEEEEECCHH
Confidence            366655 9989999999999875   565  8999999865

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.44  E-value=0.022  Score=43.71  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=58.0

Q ss_pred             CCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh------CC
Q 025075           16 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL------TG   88 (258)
Q Consensus        16 ~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~   88 (258)
                      +..+.-+|+|+|+ |.+|...+..+...|. ..|+..|.++.+. .+.++.-   ...+. . ...++.+.+      ++
T Consensus        24 ~~~~g~~VlI~Ga-G~vGl~~~q~ak~~Ga-~~Vi~~d~~~~r~~~a~~lGa---~~~i~-~-~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          24 DIEMGSSVVVIGI-GAVGLMGIAGAKLRGA-GRIIGVGSRPICVEAAKFYGA---TDILN-Y-KNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TCCTTCCEEEECC-SHHHHHHHHHHHTTTC-SCEEEECCCHHHHHHHHHHTC---SEEEC-G-GGSCHHHHHHHHTTTSC
T ss_pred             CCCCCCEEEEEcC-Ccchhhhhhhhhcccc-cccccccchhhhHHHHHhhCc---ccccc-c-cchhHHHHHHHHhhccC
Confidence            3444458999998 9999998888887774 4799999976532 2333321   10111 1 122333322      45


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      +|+||.++|.+.               .+.+..   +-..|++.++.++.
T Consensus        97 ~D~vid~~g~~~---------------~~~~a~---~~~~~~G~iv~~G~  128 (174)
T d1jqba2          97 VDRVIMAGGGSE---------------TLSQAV---KMVKPGGIISNINY  128 (174)
T ss_dssp             EEEEEECSSCTT---------------HHHHHH---HHEEEEEEEEECCC
T ss_pred             cceEEEccCCHH---------------HHHHHH---HHHhcCCEEEEEee
Confidence            999999987431               112222   22358888888753

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.01  Score=42.48  Aligned_cols=34  Identities=29%  Similarity=0.419  Sum_probs=30.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.||+|||+ |++|.-+|..|...|.  ++.+++..+
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~--~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGA--KTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhcccc--EEEEEeecc
Confidence            469999998 9999999999999987  999999865

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.43  E-value=0.089  Score=40.08  Aligned_cols=103  Identities=17%  Similarity=0.187  Sum_probs=61.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhh-----hCCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENA-----LTGMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a-----~~~aD   90 (258)
                      ..+..+|+|+|+ |.+|...+..+...|. ..|+..|.++.+. .+.++....   .+.........+..     =.++|
T Consensus        26 v~~G~~VlV~G~-G~iGl~a~~~ak~~Ga-~~Vi~~d~~~~r~~~a~~~Ga~~---~i~~~~~~~~~~~~~~~~~~~G~d  100 (174)
T d1e3ia2          26 VTPGSTCAVFGL-GCVGLSAIIGCKIAGA-SRIIAIDINGEKFPKAKALGATD---CLNPRELDKPVQDVITELTAGGVD  100 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTTCSE---EECGGGCSSCHHHHHHHHHTSCBS
T ss_pred             CCCCCEEEEECC-ChHHHHHHHHHHHhCC-ceeeeeccchHHHHHHHHhCCCc---ccCCccchhhhhhhHhhhhcCCCc
Confidence            333458999998 9999999988888774 5899999987532 333332211   11000001111111     25899


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCC-cEEEEecCCCCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLISNPVNS  142 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~-a~viv~tNPvd~  142 (258)
                      +||-+.|.+                  ..+-..++-..|. +.++++..|.+-
T Consensus       101 ~vie~~G~~------------------~~~~~a~~~~~~g~G~~v~vG~~~~~  135 (174)
T d1e3ia2         101 YSLDCAGTA------------------QTLKAAVDCTVLGWGSCTVVGAKVDE  135 (174)
T ss_dssp             EEEESSCCH------------------HHHHHHHHTBCTTTCEEEECCCSSSE
T ss_pred             EEEEecccc------------------hHHHHHHHHhhcCCeEEEecCCCCCc
Confidence            999998743                  1122233334574 888888877553

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.41  E-value=0.071  Score=42.90  Aligned_cols=153  Identities=19%  Similarity=0.221  Sum_probs=84.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hh--HHHHHhcCCCCCeEEEEe-CCCc---h-------HhhhCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG--VTADISHMDTGAVVRGFL-GQPQ---L-------ENALTG   88 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g--~~~dl~~~~~~~~v~~~~-~~~d---~-------~~a~~~   88 (258)
                      |.|+||++.+|..++..|+..|.  +|++.|.+.. ..  ...++....  .++..+. .-+|   .       .+.+..
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGC--KVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            56779999999999999999997  8988877553 11  112222111  1221111 1111   1       122357


Q ss_pred             CCEEEEcCCCCCCCC---Cch---hhHHHHh----HHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCC
Q 025075           89 MDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD  158 (258)
Q Consensus        89 aDiVIi~ag~~~~~g---~~r---~d~~~~n----~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~  158 (258)
                      -|++|..||......   .+.   ...+..|    ....+.+++.+.+. ..+.||++|.-..           ..+ .|
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~-~~G~IVnisS~~~-----------~~~-~~  146 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKK-RKGRIINIASVVG-----------LIG-NI  146 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-TCEEEEEECCTHH-----------HHC-CT
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHc-CCcEEEEEcChhh-----------cCC-CC
Confidence            899999998754322   121   1233444    34566777777665 4677777764322           111 33


Q ss_pred             CCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          159 PKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       159 ~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      ..-.++.+.-.-..|-+.+|.+++  +..|++-++-
T Consensus       147 ~~~~Y~asKaal~~ltk~lA~el~--~~gIrvN~I~  180 (244)
T d1edoa_         147 GQANYAAAKAGVIGFSKTAAREGA--SRNINVNVVC  180 (244)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEE
T ss_pred             CCHHHHHHHHHHHHChHHHHHHHh--hhCcEEEEEe
Confidence            332333332233457778888874  5667765554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.41  E-value=0.014  Score=41.71  Aligned_cols=34  Identities=21%  Similarity=0.295  Sum_probs=30.9

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .||+|+|+ |+.|..++......|+  ++..+|.++.
T Consensus        12 ~kigIlGg-GQL~rMla~aA~~lG~--~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGS-GELGKEVAIECQRLGV--EVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHTTTC--EEEEEESSTT
T ss_pred             CEEEEEeC-CHHHHHHHHHHHHCCC--EEEEEcCCCC
Confidence            59999998 9999999999999998  9999998764

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0081  Score=50.39  Aligned_cols=107  Identities=20%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCCC--hhHH--HHHhcCCCCCeEEEEeCCCchHhh
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVNT--PGVT--ADISHMDTGAVVRGFLGQPQLENA   85 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~----~~~~-----~ei~L~D~~~~--~g~~--~dl~~~~~~~~v~~~~~~~d~~~a   85 (258)
                      ...||.|.|| |.-|..++..|..    .|+-     +.+.++|.+.-  ++..  ++-.+..+. .........++.++
T Consensus        24 ~d~kiv~~GA-GsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a-~~~~~~~~~~L~e~  101 (294)
T d1pj3a1          24 SEHKILFLGA-GEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFT-HSAPESIPDTFEDA  101 (294)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGC-BCCCSSCCSSHHHH
T ss_pred             HHcEEEEECc-cHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhh-ccccccchhHHHHH
Confidence            3459999998 9999998876543    3442     47999998541  1110  111111110 00000112357777


Q ss_pred             hC--CCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           86 LT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        86 ~~--~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ++  +.|++|-+.|.+   |.-           -+++++.|.+.+++.+|+-.|||..
T Consensus       102 i~~~kptvliG~S~~~---g~f-----------t~evi~~Ma~~~~~PIIFaLSNPt~  145 (294)
T d1pj3a1         102 VNILKPSTIIGVAGAG---RLF-----------TPDVIRAMASINERPVIFALSNPTA  145 (294)
T ss_dssp             HHHHCCSEEEECCCSS---CCS-----------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             HHhcCCceEEEecCCC---CcC-----------CHHHHHHHHhcCCCcEEEEccCCCC
Confidence            76  888888776533   210           1567778888999999999999964

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.35  E-value=0.037  Score=41.83  Aligned_cols=100  Identities=17%  Similarity=0.153  Sum_probs=60.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchH-hhhCCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLE-NALTGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~-~a~~~aDiVIi   94 (258)
                      ..+..+|.|+|+ |.+|...+..+...|.  +++.+|.++++ ..+.++.   ....+. .....+.. ......|+++.
T Consensus        25 ~~~g~~vlI~Ga-G~vG~~a~q~ak~~G~--~vi~~~~~~~k~~~a~~lG---a~~~i~-~~~~~~~~~~~~~~~d~vi~   97 (168)
T d1piwa2          25 CGPGKKVGIVGL-GGIGSMGTLISKAMGA--ETYVISRSSRKREDAMKMG---ADHYIA-TLEEGDWGEKYFDTFDLIVV   97 (168)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHHTC--EEEEEESSSTTHHHHHHHT---CSEEEE-GGGTSCHHHHSCSCEEEEEE
T ss_pred             cCCCCEEEEECC-CCcchhHHHHhhhccc--cccccccchhHHHHhhccC---CcEEee-ccchHHHHHhhhcccceEEE
Confidence            334458999998 9999998888877786  78899998763 2333332   111111 11112322 33457899999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +.+.+.....+                ..++-..|.+.+++++-|
T Consensus        98 ~~~~~~~~~~~----------------~~~~~l~~~G~iv~~G~~  126 (168)
T d1piwa2          98 CASSLTDIDFN----------------IMPKAMKVGGRIVSISIP  126 (168)
T ss_dssp             CCSCSTTCCTT----------------TGGGGEEEEEEEEECCCC
T ss_pred             EecCCccchHH----------------HHHHHhhccceEEEeccc
Confidence            87654322111                123344588888888644

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.34  E-value=0.013  Score=42.37  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+.|++|||| |.+|.-+|..|...|.  +|.+++..+
T Consensus        22 ~p~~~vIiG~-G~ig~E~A~~l~~lG~--~Vtii~~~~   56 (122)
T d1v59a2          22 IPKRLTIIGG-GIIGLEMGSVYSRLGS--KVTVVEFQP   56 (122)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCCeEEEECC-CchHHHHHHHHHhhCc--ceeEEEecc
Confidence            4569999998 9999999999999887  999999865

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.04  Score=42.34  Aligned_cols=57  Identities=19%  Similarity=0.388  Sum_probs=42.9

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      -..++|+|||.+.-||..++.+|.+.|-  .+.+++.+                       +.++.+.+++||++|.++|
T Consensus        37 l~Gk~vvVIGrS~iVGrPLa~lL~~~ga--tVt~~~~~-----------------------t~~l~~~~~~aDivi~a~G   91 (170)
T d1a4ia1          37 IAGRHAVVVGRSKIVGAPMHDLLLWNNA--TVTTCHSK-----------------------TAHLDEEVNKGDILVVATG   91 (170)
T ss_dssp             CTTCEEEEECCCTTTHHHHHHHHHHTTC--EEEEECTT-----------------------CSSHHHHHTTCSEEEECCC
T ss_pred             cccceEEEEecCCccchHHHHHHHhccC--ceEEEecc-----------------------cccHHHHHhhccchhhccc
Confidence            3446899999988899999999998875  67776542                       2344566778888888777


Q ss_pred             CC
Q 025075           98 VP   99 (258)
Q Consensus        98 ~~   99 (258)
                      .|
T Consensus        92 ~~   93 (170)
T d1a4ia1          92 QP   93 (170)
T ss_dssp             CT
T ss_pred             cc
Confidence            54

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.30  E-value=0.0073  Score=50.65  Aligned_cols=39  Identities=15%  Similarity=0.174  Sum_probs=34.1

Q ss_pred             cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           15 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        15 ~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ++|.+...|+|||| |..|.+.|..|.+.|+  +++++|..+
T Consensus         2 ~~p~~~~dV~IIGA-G~sGl~~a~~L~~~G~--~v~i~Ek~~   40 (298)
T d1w4xa1           2 RQPPEEVDVLVVGA-GFSGLYALYRLRELGR--SVHVIETAG   40 (298)
T ss_dssp             CCCCSEEEEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCCCCCCCEEEECc-cHHHHHHHHHHHhCCC--CEEEEEcCC
Confidence            45666779999998 9999999999999998  899999864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.29  E-value=0.0067  Score=46.22  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             CCCeEEEEcCCCchHHHH-HHHHHhCCCCcEEEE-EeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPL-AMLMKINPLVSVLHL-YDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~-a~~L~~~~~~~ei~L-~D~~~~   57 (258)
                      +++||+|||+ |.+|..+ ...|...+.. ||+. .|++.+
T Consensus         3 kkirvaIIGa-G~ig~~~~~~~l~~~~~~-el~avas~~~~   41 (157)
T d1nvmb1           3 QKLKVAIIGS-GNIGTDLMIKVLRNAKYL-EMGAMVGIDAA   41 (157)
T ss_dssp             SCEEEEEECC-SHHHHHHHHHHHHHCSSE-EEEEEECSCTT
T ss_pred             CCcEEEEEcC-cHHHHHHHHHHHhhCCcc-eEEEEEecchh
Confidence            4579999996 9999865 4455555554 5555 577654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.28  E-value=0.018  Score=48.75  Aligned_cols=70  Identities=10%  Similarity=0.085  Sum_probs=46.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh--hHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~--g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      ....++|||+ |..+...+..+...-.+++|.+|+++++.  ..+.++.+...  .+.  .   +..+++++||+|+.+-
T Consensus       124 ~~~~l~iiGa-G~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~--~~~--~---~~~~a~~~aDiV~taT  195 (320)
T d1omoa_         124 NSSVFGFIGC-GTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGI--SAS--V---QPAEEASRCDVLVTTT  195 (320)
T ss_dssp             TCCEEEEECC-SHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTC--CEE--E---CCHHHHTSSSEEEECC
T ss_pred             CccEEEEecC-cccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCC--ccc--c---chhhhhccccEEEEec
Confidence            3458999997 99998887766553336899999998753  22333433221  222  1   2357899999987764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.27  E-value=0.13  Score=39.16  Aligned_cols=101  Identities=15%  Similarity=0.186  Sum_probs=59.4

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchH---h--hhCCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLE---N--ALTGMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~---~--a~~~aD   90 (258)
                      ..+.-.|+|+|+ |.+|...+..+...|. .+|+.+|.++++ ..+.++.-..   .++....+...+   +  .=.++|
T Consensus        27 ~~~g~tVlI~G~-GgvGl~ai~~ak~~G~-~~Vi~vd~~~~kl~~Ak~~GA~~---~in~~~~~~~~~~~~~~~~g~G~d  101 (176)
T d1d1ta2          27 VKPGSTCVVFGL-GGVGLSVIMGCKSAGA-SRIIGIDLNKDKFEKAMAVGATE---CISPKDSTKPISEVLSEMTGNNVG  101 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHHTSCCC
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCC-ceEEEecCcHHHHHHHHhcCCcE---EECccccchHHHHHHHHhccccce
Confidence            333447999998 9999999988888774 589999998763 2333332211   111001111111   1  125899


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCC-CcEEEEecCCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPV  140 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p-~a~viv~tNPv  140 (258)
                      ++|.+.|.+                  ......+....+ .+.++++..|.
T Consensus       102 ~vi~~~g~~------------------~~~~~a~~~~~~~~G~~v~vG~~~  134 (176)
T d1d1ta2         102 YTFEVIGHL------------------ETMIDALASCHMNYGTSVVVGVPP  134 (176)
T ss_dssp             EEEECSCCH------------------HHHHHHHTTSCTTTCEEEECSCCC
T ss_pred             EEEEeCCch------------------HHHHHHHHHhhcCCeEEEEEEccc
Confidence            999997632                  112223334444 48888887764

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.26  E-value=0.0089  Score=44.74  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +||+|||| |++|..+|..|...+.--+|+++|.++
T Consensus         3 krivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            49999998 999999999998766434899999876

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.18  E-value=0.037  Score=42.50  Aligned_cols=78  Identities=17%  Similarity=0.213  Sum_probs=47.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhH-HHHHhcCC----CCCeE-----EEEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-TADISHMD----TGAVV-----RGFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~-~~dl~~~~----~~~~v-----~~~~~~~d~~~a~~~a   89 (258)
                      ++||+|.|- |.+|..++..+..++-++-+.+.|..+.... .+-..+..    .....     ..+....++.+.+.++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            579999997 9999999988887776655667776554211 11111110    00000     0011134566778899


Q ss_pred             CEEEEcCCC
Q 025075           90 DLVIIPAGV   98 (258)
Q Consensus        90 DiVIi~ag~   98 (258)
                      |+||-|.|.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999999764

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.17  E-value=0.14  Score=41.02  Aligned_cols=106  Identities=17%  Similarity=0.167  Sum_probs=60.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCch---Hh-------hh-
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQL---EN-------AL-   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d~---~~-------a~-   86 (258)
                      +++.|.|+||++.+|..++..|+..|..-.|++.+++.++...  +.... ...+..+.. -+|.   ++       .+ 
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~--l~~~~-~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   78 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATE--LKSIK-DSRVHVLPLTVTCDKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHH--HHTCC-CTTEEEEECCTTCHHHHHHHHHHHHHHHG
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHH--HHHhh-CCceEEEEEecCCHHHHHHHHHHHHHHhC
Confidence            4467899999999999999999998853368888887654332  22221 112222211 1121   11       11 


Q ss_pred             -CCCCEEEEcCCCCCCCC----Cch---hhHHHHhH----HHHHHHHHHhhhh
Q 025075           87 -TGMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKC  127 (258)
Q Consensus        87 -~~aDiVIi~ag~~~~~g----~~r---~d~~~~n~----~i~~~i~~~i~~~  127 (258)
                       .+.|++|..||.....+    .+.   .+.+..|+    .+.+.+.+.+++.
T Consensus        79 ~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~  131 (250)
T d1yo6a1          79 SDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNA  131 (250)
T ss_dssp             GGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHH
T ss_pred             CCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence             24899999999643221    222   22344443    4556666666654

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.16  E-value=0.032  Score=42.72  Aligned_cols=56  Identities=21%  Similarity=0.460  Sum_probs=43.1

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..++|+|||.+..||..++.+|.+.+.  .|...+..                       +.++.+.+++||+||.++|.
T Consensus        36 ~GK~v~VIGrS~~VG~Pla~lL~~~ga--tVt~~h~~-----------------------t~~l~~~~~~ADivI~a~G~   90 (166)
T d1b0aa1          36 FGLNAVVIGASNIVGRPMSMELLLAGC--TTTVTHRF-----------------------TKNLRHHVENADLLIVAVGK   90 (166)
T ss_dssp             TTCEEEEECCCTTTHHHHHHHHHTTTC--EEEEECSS-----------------------CSCHHHHHHHCSEEEECSCC
T ss_pred             ccceEEEEeccccccHHHHHHHHHhhc--cccccccc-----------------------cchhHHHHhhhhHhhhhccC
Confidence            346899999988899999999988875  56655431                       23556778899999999885


Q ss_pred             C
Q 025075           99 P   99 (258)
Q Consensus        99 ~   99 (258)
                      |
T Consensus        91 p   91 (166)
T d1b0aa1          91 P   91 (166)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.15  E-value=0.037  Score=42.18  Aligned_cols=77  Identities=21%  Similarity=0.148  Sum_probs=55.2

Q ss_pred             HhHHhhcC-CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC
Q 025075            9 QAKCRAKG-GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT   87 (258)
Q Consensus         9 ~~~~~~~~-~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~   87 (258)
                      .++.|... ...-++++|+|- |.+|..+|..+...|-  .|..+++|+-++.. ...|..   .+      ..++++++
T Consensus        11 d~i~r~t~~~laGk~vvV~GY-G~vGrG~A~~~rg~Ga--~V~V~E~DPi~alq-A~mdGf---~v------~~~~~a~~   77 (163)
T d1v8ba1          11 DGLMRATDFLISGKIVVICGY-GDVGKGCASSMKGLGA--RVYITEIDPICAIQ-AVMEGF---NV------VTLDEIVD   77 (163)
T ss_dssp             HHHHHHHCCCCTTSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSCHHHHHH-HHTTTC---EE------CCHHHHTT
T ss_pred             HHHHHHhCceecCCEEEEecc-cccchhHHHHHHhCCC--EEEEEecCchhhHH-HHhcCC---cc------CchhHccc
Confidence            45666664 223358999998 9999999999998886  89999998743221 122321   22      24679999


Q ss_pred             CCCEEEEcCCC
Q 025075           88 GMDLVIIPAGV   98 (258)
Q Consensus        88 ~aDiVIi~ag~   98 (258)
                      .+|++|.+.|.
T Consensus        78 ~aDi~vTaTGn   88 (163)
T d1v8ba1          78 KGDFFITCTGN   88 (163)
T ss_dssp             TCSEEEECCSS
T ss_pred             cCcEEEEcCCC
Confidence            99999988764

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.14  E-value=0.2  Score=36.72  Aligned_cols=113  Identities=12%  Similarity=0.019  Sum_probs=67.6

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~---G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++|+||||+   +..|..++..|...|+  +|+.+..+..  .   +.      ....   -.++.+.-...|+|+++..
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~g~--~v~pVnP~~~--~---i~------G~~~---~~sl~dlp~~iD~v~i~vp   83 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEHGY--DVYPVNPKYE--E---VL------GRKC---YPSVLDIPDKIEVVDLFVK   83 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEEC---BSSGGGCSSCCSEEEECSC
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHCCC--EEEEECCccc--c---cC------CCcc---cccccccCccceEEEEEeC
Confidence            379999986   5789999999999998  7888865431  1   11      1111   1244443347899998852


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-e-eccHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T-MLDVVRA  173 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t-~lds~R~  173 (258)
                                      .+.+.++.+++.+.+++++++..+.=.+    -+.+.+++.+ +   +++|= | ..+..||
T Consensus        84 ----------------~~~~~~~~~e~~~~g~k~v~~~~G~~~e----e~~~~a~~~g-i---~vig~~C~~v~~~rl  137 (139)
T d2d59a1          84 ----------------PKLTMEYVEQAIKKGAKVVWFQYNTYNR----EASKKADEAG-L---IIVANRCMMREHERL  137 (139)
T ss_dssp             ----------------HHHHHHHHHHHHHHTCSEEEECTTCCCH----HHHHHHHHTT-C---EEEESCCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHHhCCCEEEEeccccCH----HHHHHHHHCC-C---EEEcCCcChhhhhhh
Confidence                            3445666666777777765543322222    3445555543 3   67775 6 4455444

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.12  E-value=0.0086  Score=46.46  Aligned_cols=34  Identities=21%  Similarity=0.320  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ||+|||| |..|.+.|+.|.+.|+ .+|.++|....
T Consensus         2 ~V~IIGa-G~aGL~aA~~L~~~G~-~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGA-GMSGISAAKRLSEAGI-TDLLILEATDH   35 (347)
T ss_dssp             CEEEECC-BHHHHHHHHHHHHTTC-CCEEEECSSSS
T ss_pred             CEEEECC-cHHHHHHHHHHHhCCC-CcEEEEECCCC
Confidence            8999998 9999999999999985 36999998653

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.06  E-value=0.039  Score=44.54  Aligned_cols=158  Identities=13%  Similarity=0.187  Sum_probs=82.0

Q ss_pred             CeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCC--Cch-------HhhhCC
Q 025075           21 FKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQ--PQL-------ENALTG   88 (258)
Q Consensus        21 ~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~--~d~-------~~a~~~   88 (258)
                      +++.|+||+|  .+|..++..|+..|.  +|++.|+++. ...+.++.........-....+  .+.       .+.+-.
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga--~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   86 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGA--EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFGG   86 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTC--EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcCC
Confidence            4788999876  599999999999997  8999998764 2222222221111111001111  111       223357


Q ss_pred             CCEEEEcCCCCCCC-------CCchhh---HHHHhHHHHHHHHHHhhhhC-CCcEEEEecCCCCCcHHHHHHHHHHhCCC
Q 025075           89 MDLVIIPAGVPRKP-------GMTRDD---LFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTY  157 (258)
Q Consensus        89 aDiVIi~ag~~~~~-------g~~r~d---~~~~n~~i~~~i~~~i~~~~-p~a~viv~tNPvd~~~~i~t~~~~~~~~~  157 (258)
                      .|++|..+|.....       ..+..+   .+.-|+.-...+++....+- ..+.+++++.-...           . +.
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~-----------~-~~  154 (256)
T d1ulua_          87 LDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASE-----------K-VV  154 (256)
T ss_dssp             EEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGT-----------S-BC
T ss_pred             ceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhc-----------C-CC
Confidence            89999998864211       112222   34455554555555444332 34667776542220           1 12


Q ss_pred             CCCcEEEEeeccHHHHHHHHHHHhCCCCCceeEEEEe
Q 025075          158 DPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG  194 (258)
Q Consensus       158 ~~~kviG~t~lds~R~~~~la~~l~v~~~~v~~~v~G  194 (258)
                      |..-.++.+.-.-..+-+.+|.+++  ++.|++-.+-
T Consensus       155 ~~~~~Y~asKaal~~ltr~lA~ela--~~gIrVN~I~  189 (256)
T d1ulua_         155 PKYNVMAIAKAALEASVRYLAYELG--PKGVRVNAIS  189 (256)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHG--GGTCEEEEEE
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhc--ccCCEEeeec
Confidence            2222222322222346677888875  5566655444

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.03  E-value=0.32  Score=38.51  Aligned_cols=34  Identities=26%  Similarity=0.266  Sum_probs=31.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .+.|+||++.+|.+++..|++.|.  .|++.|++++
T Consensus         7 valITGas~GIG~aia~~la~~G~--~V~~~~r~~~   40 (248)
T d2o23a1           7 VAVITGGASGLGLATAERLVGQGA--SAVLLDLPNS   40 (248)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC--EEEEEECTTS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCChH
Confidence            567899999999999999999998  8999999876

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.03  E-value=0.074  Score=43.01  Aligned_cols=34  Identities=18%  Similarity=0.123  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.+.|+||++.+|.+++..|+..|.  +|++.+.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~--~Vvi~~~~~   40 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGA--SVVVNYGSS   40 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCC--EEEEEcCCC
Confidence            4678999999999999999999998  888865544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.01  E-value=0.012  Score=43.25  Aligned_cols=34  Identities=21%  Similarity=0.321  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..||+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        35 ~k~v~VIGg-G~iG~E~A~~l~~~g~--~Vtvie~~~   68 (133)
T d1q1ra2          35 DNRLVVIGG-GYIGLEVAATAIKANM--HVTLLDTAA   68 (133)
T ss_dssp             TCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhhCc--ceeeeeecc
Confidence            359999998 9999999999999987  999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.99  E-value=0.015  Score=41.47  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=31.5

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..|.|++|||| |++|.-+|..|...|.  +|.+++..+
T Consensus        19 ~~p~~vvIiGg-G~~G~E~A~~l~~~g~--~Vtlve~~~   54 (115)
T d1lvla2          19 ALPQHLVVVGG-GYIGLELGIAYRKLGA--QVSVVEARE   54 (115)
T ss_dssp             SCCSEEEEECC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCCeEEEECC-CHHHHHHHHHHhhccc--ceEEEeeec
Confidence            34579999998 9999999999999887  999999865

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.064  Score=43.71  Aligned_cols=115  Identities=18%  Similarity=0.157  Sum_probs=65.6

Q ss_pred             CeEE-EEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCChh--HHHHHhcCCCCCeEEEEeCCCc----------hHhhh
Q 025075           21 FKVA-ILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLGQPQ----------LENAL   86 (258)
Q Consensus        21 ~KI~-IIGa~G~VG~~~a~~L~~~-~~~~ei~L~D~~~~~g--~~~dl~~~~~~~~v~~~~~~~d----------~~~a~   86 (258)
                      ++|+ |+||++.+|..++..|+.. |.  .|++.+++.++.  .+.+|............. -+|          ..+.+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-vs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSG--DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLD-IDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSS--EEEEEESSHHHHHHHHHHHHHTTCCCEEEECC-TTCHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEe-cCCHHHHHHHHHHHHHhc
Confidence            4785 6799999999999988864 65  899999987632  223343322111111111 112          12234


Q ss_pred             CCCCEEEEcCCCCCCCC---Cchh---hHHHHhHHHHHHHHHHhhhh-CCCcEEEEecC
Q 025075           87 TGMDLVIIPAGVPRKPG---MTRD---DLFNINAGIVRTLCEGIAKC-CPNATVNLISN  138 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g---~~r~---d~~~~n~~i~~~i~~~i~~~-~p~a~viv~tN  138 (258)
                      ..-|++|..||......   .+..   ..+.-|+--...+++.+... .+.+.+++++.
T Consensus        80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            57999999999743221   1222   23445655444444444433 23577887775

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.97  E-value=0.036  Score=42.86  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=46.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCC----C-------CCeEEEEeCCCchHhhhC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMD----T-------GAVVRGFLGQPQLENALT   87 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~----~-------~~~v~~~~~~~d~~~a~~   87 (258)
                      |.||+|.|- |.+|..++..+.+++-++-+.+.|..+... ..+-..+..    .       ...+.   ...++.+.+.
T Consensus         1 MIKVaINGf-GRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~---v~g~~~~~~~   76 (178)
T d1b7go1           1 MVNVAVNGY-GTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIP---VAGTVEDLIK   76 (178)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCC---CCCCHHHHHH
T ss_pred             CeEEEEECC-CHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceecccccee---cCCchhhhhh
Confidence            569999997 999999999998877665555566654321 111111110    0       00111   1235667788


Q ss_pred             CCCEEEEcCCC
Q 025075           88 GMDLVIIPAGV   98 (258)
Q Consensus        88 ~aDiVIi~ag~   98 (258)
                      ++|+||-|.|.
T Consensus        77 ~vDiViecTG~   87 (178)
T d1b7go1          77 TSDIVVDTTPN   87 (178)
T ss_dssp             HCSEEEECCST
T ss_pred             cCCEEEECCCC
Confidence            99999999763

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.93  E-value=0.016  Score=44.71  Aligned_cols=78  Identities=21%  Similarity=0.212  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC----hhHHHHHhcCCCCCeEEEE-eCC-CchHhhhCCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGF-LGQ-PQLENALTGMD   90 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~----~g~~~dl~~~~~~~~v~~~-~~~-~d~~~a~~~aD   90 (258)
                      +-+.++|+|||-+.-||..++.+|.+++-  .+.+.|.+..    +.....+.+.    ..... ..+ +++++....||
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~ga--TVt~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~lk~~~~~aD   99 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGA--TVYSVDVNNIQKFTRGESLKLNKH----HVEDLGEYSEDLLKKCSLDSD   99 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSC--EEEEECSSEEEEEESCCCSSCCCC----EEEEEEECCHHHHHHHHHHCS
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCC--EEEEeccccccccccccceeeeee----ccccccccchhHHhhccccCC
Confidence            33446999999977899999999998876  7888876532    1111112221    22211 112 23677788999


Q ss_pred             EEEEcCCCCC
Q 025075           91 LVIIPAGVPR  100 (258)
Q Consensus        91 iVIi~ag~~~  100 (258)
                      +||.++|.|.
T Consensus       100 IvIsavG~p~  109 (171)
T d1edza1         100 VVITGVPSEN  109 (171)
T ss_dssp             EEEECCCCTT
T ss_pred             EEEEccCCCc
Confidence            9999998764

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.90  E-value=0.0073  Score=47.70  Aligned_cols=38  Identities=16%  Similarity=0.191  Sum_probs=31.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCC-----cEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLV-----SVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~-----~ei~L~D~~~~   57 (258)
                      +|.||+|||| |.-|.+.|+.|.+.|+-     -+|.+||..+.
T Consensus         1 rp~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           1 RPYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             CCEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            3579999998 99999999999887631     27999998764

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.85  E-value=0.035  Score=43.74  Aligned_cols=103  Identities=20%  Similarity=0.315  Sum_probs=62.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCc-EEEEEeCCCChhHHHHHhcCCCCCeEE-------EE--------------eCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVS-VLHLYDVVNTPGVTADISHMDTGAVVR-------GF--------------LGQ   79 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~-ei~L~D~~~~~g~~~dl~~~~~~~~v~-------~~--------------~~~   79 (258)
                      +|-|||- |.-|..++..+...++.+ +++.+|.|.   +.  |.......++.       ..              ...
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~---~~--L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~   76 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDA---QA--LLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAK   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCH---HH--HHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchH---HH--HhcCCcchhhccccccccCCCcCcChhhhHhhHHHHH
Confidence            6889997 999999999998877532 677777653   12  22221111111       00              011


Q ss_pred             CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        80 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..+.+.++++|+||++||.....|       ..-.|++.++++...    --.+-++|-|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGgTG-------tGaaPviA~iake~g----~l~v~ivt~PF~  127 (198)
T d1rq2a1          77 DEIEELLRGADMVFVTAGEGGGTG-------TGGAPVVASIARKLG----ALTVGVVTRPFS  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHHT----CEEEEEEEECCG
T ss_pred             HHHHHHhcCCCEEEEEEecCCCCC-------cchHHHHHHHHHHcC----CcEEEEEecChH
Confidence            235678899999999998764433       233677777776652    123555677765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.85  E-value=0.019  Score=45.75  Aligned_cols=36  Identities=28%  Similarity=0.332  Sum_probs=32.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ...||+|||| |..|.+.|..|.+.|+  ++.++|....
T Consensus        48 ~~k~VvIIGa-GpAGl~aA~~l~~~G~--~v~l~E~~~~   83 (233)
T d1djqa3          48 NKDSVLIVGA-GPSGSEAARVLMESGY--TVHLTDTAEK   83 (233)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSSS
T ss_pred             CCceEEEEcc-cHHHHHHHHHHHHhcc--ceeeEeeccc
Confidence            3469999998 9999999999999998  9999998653

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.85  E-value=0.026  Score=42.97  Aligned_cols=94  Identities=18%  Similarity=0.215  Sum_probs=53.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV   98 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~   98 (258)
                      ..+|.|.||+|.+|...+..+...|.  +++..+.++++. .+.++   ... .+-.+....+....-+++|+||-+.|.
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~G~--~vi~~~~~~~~~~~~~~l---Ga~-~~i~~~~~~~~~~~~~g~D~v~d~~G~  101 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAMGL--RVLAAASRPEKLALPLAL---GAE-EAATYAEVPERAKAWGGLDLVLEVRGK  101 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHTTC--EEEEEESSGGGSHHHHHT---TCS-EEEEGGGHHHHHHHTTSEEEEEECSCT
T ss_pred             CCEEEEEeccccchhhhhhhhccccc--cccccccccccccccccc---ccc-eeeehhhhhhhhhccccccccccccch
Confidence            34899999889999999888888886  777777655422 22222   111 221111000111234689999987651


Q ss_pred             CCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           99 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        99 ~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                            +    +       .   ..++-..|.+.++.+.+|
T Consensus       102 ------~----~-------~---~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         102 ------E----V-------E---ESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             ------T----H-------H---HHHTTEEEEEEEEEC---
T ss_pred             ------h----H-------H---HHHHHHhcCCcEEEEeCC
Confidence                  1    1       1   224444688888887654

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.82  E-value=0.13  Score=41.01  Aligned_cols=115  Identities=15%  Similarity=0.157  Sum_probs=64.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHH---hCCCCcEEEEEeCCCChhHH-HHHhcCCCCCeEEEEeC----CCchHhh------
Q 025075           20 GFKVAILGAAGGIGQPLAMLMK---INPLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLG----QPQLENA------   85 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~---~~~~~~ei~L~D~~~~~g~~-~dl~~~~~~~~v~~~~~----~~d~~~a------   85 (258)
                      |++|.|+||++.+|..++..|+   ..|.  .|++.++++++.+. .++.....  .+..+..    ..+.++.      
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dvs~~~~v~~~~~~i~~   77 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQ--HLFTTCRNREQAKELEDLAKNHS--NIHILEIDLRNFDAYDKLVADIEG   77 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCS--EEEEEESCTTSCHHHHHHHHHCT--TEEEEECCTTCGGGHHHHHHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHhcCC--cEEEEEEEeccHHHHHHHHhhhHH
Confidence            4579999999999999998775   3565  89999998864322 23322111  2222111    1122211      


Q ss_pred             ---hCCCCEEEEcCCCCCCCC----Cchh---hHHHHhH----HHHHHHHHHhhhhC----------CCcEEEEecC
Q 025075           86 ---LTGMDLVIIPAGVPRKPG----MTRD---DLFNINA----GIVRTLCEGIAKCC----------PNATVNLISN  138 (258)
Q Consensus        86 ---~~~aDiVIi~ag~~~~~g----~~r~---d~~~~n~----~i~~~i~~~i~~~~----------p~a~viv~tN  138 (258)
                         ....|++|..||.....+    .+..   +.+..|+    ...+.+.+.+++..          ..+.+|+++.
T Consensus        78 ~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S  154 (248)
T d1snya_          78 VTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSS  154 (248)
T ss_dssp             HHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECC
T ss_pred             HhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence               235899999998744332    1111   2334443    34556666665531          2456666654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.78  E-value=0.017  Score=41.67  Aligned_cols=35  Identities=14%  Similarity=-0.036  Sum_probs=30.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .|.|++|||| |.+|.-+|..|...|.  +|.++..++
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~--~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGL--DVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCC--eEEEEEech
Confidence            3468999998 9999999999999887  888988754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.74  E-value=0.012  Score=46.37  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=27.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC----CcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL----VSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~----~~ei~L~D~~   55 (258)
                      |||+|||| |-+|.+.|+.|+++|+    +.++.+++..
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v~e~~~i~~~~   38 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSVLQPLDVKVYADR   38 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTTSSSCEEEEEESC
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCceEEeeeeecccC
Confidence            79999998 9999999999998764    3467777643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.72  E-value=0.12  Score=38.88  Aligned_cols=96  Identities=15%  Similarity=0.142  Sum_probs=56.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh------CCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL------TGMD   90 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aD   90 (258)
                      .+..+|.|+||+|.||......+...|.  +++..+.++++. .+.++   ... .+-.. .+.|+.+.+      ++.|
T Consensus        27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~--~vi~~~~~~~~~~~~~~~---Ga~-~vi~~-~~~~~~~~i~~~t~~~g~d   99 (174)
T d1yb5a2          27 KAGESVLVHGASGGVGLAACQIARAYGL--KILGTAGTEEGQKIVLQN---GAH-EVFNH-REVNYIDKIKKYVGEKGID   99 (174)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC--EEEEEESSHHHHHHHHHT---TCS-EEEET-TSTTHHHHHHHHHCTTCEE
T ss_pred             CCCCEEEEEeccccccccccccccccCc--cccccccccccccccccc---Ccc-ccccc-ccccHHHHhhhhhccCCce
Confidence            3445899999889999999888888886  677776554321 22222   111 22111 123444443      3589


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +|+-+.|.                +.+....+.+   .|.+.++.+.++
T Consensus       100 ~v~d~~g~----------------~~~~~~~~~l---~~~G~iv~~G~~  129 (174)
T d1yb5a2         100 IIIEMLAN----------------VNLSKDLSLL---SHGGRVIVVGSR  129 (174)
T ss_dssp             EEEESCHH----------------HHHHHHHHHE---EEEEEEEECCCC
T ss_pred             EEeecccH----------------HHHHHHHhcc---CCCCEEEEEecC
Confidence            98887641                1123333333   478888888654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.72  E-value=0.2  Score=37.83  Aligned_cols=40  Identities=20%  Similarity=0.188  Sum_probs=32.1

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP   58 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~   58 (258)
                      ..+..+|+|+|+ |.+|...+..+...|. ..|+..|+++.+
T Consensus        25 ~~~G~~VlV~Ga-GgvGl~a~~~ak~~G~-~~Vi~~d~~~~k   64 (174)
T d1p0fa2          25 VTPGSTCAVFGL-GGVGFSAIVGCKAAGA-SRIIGVGTHKDK   64 (174)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGG
T ss_pred             CCCCCEEEEECC-CchhHHHHHHHHHcCC-ceeeccCChHHH
Confidence            444458999998 9999999888887774 589999998753

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.67  E-value=0.069  Score=40.48  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=45.6

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh------CCCCE
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDL   91 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aDi   91 (258)
                      .+..+|.|.||+|.+|...+..+...|.  +++..+.++++..  .+...... .+-. ....|+.+.+      +++|+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~--~vi~~~~~~~~~~--~l~~~Ga~-~vi~-~~~~~~~~~v~~~t~~~g~d~   97 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGA--RIYTTAGSDAKRE--MLSRLGVE-YVGD-SRSVDFADEILELTDGYGVDV   97 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTC--EEEEEESSHHHHH--HHHTTCCS-EEEE-TTCSTHHHHHHHHTTTCCEEE
T ss_pred             CCCCEEEEECCCCCcccccchhhccccc--cceeeeccccccc--cccccccc-cccc-CCccCHHHHHHHHhCCCCEEE
Confidence            3345899999889999999988887776  6666665443211  12222211 2211 1234555554      57999


Q ss_pred             EEEcCC
Q 025075           92 VIIPAG   97 (258)
Q Consensus        92 VIi~ag   97 (258)
                      |+-+.|
T Consensus        98 v~d~~g  103 (183)
T d1pqwa_          98 VLNSLA  103 (183)
T ss_dssp             EEECCC
T ss_pred             EEeccc
Confidence            999875

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=94.66  E-value=0.023  Score=47.76  Aligned_cols=105  Identities=13%  Similarity=0.163  Sum_probs=62.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHH----hCCCC-----cEEEEEeCCCC--hhHHHHHhcC--CCCCeEEEEeCCCchHh
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMK----INPLV-----SVLHLYDVVNT--PGVTADISHM--DTGAVVRGFLGQPQLEN   84 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~----~~~~~-----~ei~L~D~~~~--~g~~~dl~~~--~~~~~v~~~~~~~d~~~   84 (258)
                      ....||.|.|| |.-|..++.+|.    ..|+-     +.++++|++--  +.. .|+...  .+....   ....++.+
T Consensus        23 l~d~kivi~GA-GaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~Glv~~~r-~d~~~~k~~~a~~~---~~~~~l~~   97 (308)
T d1o0sa1          23 VSQEKYLFFGA-GAASTGIAEMIVHQMQNEGISKEEACNRIYLMDIDGLVTKNR-KEMNPRHVQFAKDM---PETTSILE   97 (308)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETTEECBTTC-SSCCGGGTTTCBSS---CCCCCHHH
T ss_pred             HHHcEEEEECc-CHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCCCCccCCC-cccCHHHHHHHHhc---ccCCcHHH
Confidence            33459999998 999999887654    34542     36999998642  111 122211  111111   11234555


Q ss_pred             hhCCC--CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           85 ALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        85 a~~~a--DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      .++.+  +++|-+.+.+   |.-           .+++.+.+.+.+++.+|+-.|||..
T Consensus        98 ~i~~~kptvliG~s~~~---g~f-----------t~evv~~Ma~~~~~PIIFaLSNPtp  142 (308)
T d1o0sa1          98 VIRAARPGALIGASTVR---GAF-----------NEEVIRAMAEINERPIIFALSNPTS  142 (308)
T ss_dssp             HHHHHCCSEEEECSSCT---TCS-----------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             HHhccccccEEeccccc---CCC-----------CHHHHHHHHhhCCCcEEEEccCCCC
Confidence            55533  5666555433   321           1556677888999999999999975

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.64  E-value=0.014  Score=47.87  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=29.2

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +|+|||| |-+|.++|+.|+++|. .+|+|+|.+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~-~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGW-NNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTC-CCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCC-CcEEEEeCCC
Confidence            8999998 9999999999998885 3699999864

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.024  Score=40.97  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=30.7

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.||+|||+ |++|.-+|..|...|.  +|.+++..+
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~--~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGS--KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCc--EEEEEeecc
Confidence            469999998 9999999999999887  999999865

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.55  E-value=0.11  Score=41.43  Aligned_cols=33  Identities=18%  Similarity=0.216  Sum_probs=29.9

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ..|+||++.+|.+++..|++.|.  +|++.|++.+
T Consensus         4 AlVTGas~GIG~aia~~la~~G~--~Vvi~~r~~~   36 (266)
T d1mxha_           4 AVITGGARRIGHSIAVRLHQQGF--RVVVHYRHSE   36 (266)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC--EEEEEESSCH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCch
Confidence            46889999999999999999998  9999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.55  E-value=0.017  Score=45.60  Aligned_cols=36  Identities=14%  Similarity=0.189  Sum_probs=29.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      .||+|||| |..|.+.|..|...+.--+|.+||..+.
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            39999998 9999999998876433239999998753

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.54  E-value=0.026  Score=40.55  Aligned_cols=33  Identities=24%  Similarity=0.156  Sum_probs=30.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+|+|||| |++|.-+|..|...|.  ++.+++..+
T Consensus        33 ~~vvIiGg-G~iG~E~A~~l~~~g~--~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGG-GFIGLELAGNLAEAGY--HVKLIHRGA   65 (122)
T ss_dssp             SEEEEEEC-SHHHHHHHHHHHHTTC--EEEEECSSS
T ss_pred             CcEEEECC-cHHHHHHHHHhhcccc--eEEEEeccc
Confidence            48999998 9999999999999987  999999865

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.41  E-value=0.034  Score=39.75  Aligned_cols=35  Identities=20%  Similarity=0.276  Sum_probs=30.9

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .|.||+|||+ |.+|.-+|..|...|.  +|.++....
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~--~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGA--EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTC--EEEEEESSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCC--ceEEEEeec
Confidence            4579999998 9999999999999887  899998755

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.39  E-value=0.022  Score=41.71  Aligned_cols=25  Identities=24%  Similarity=0.424  Sum_probs=22.1

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL   45 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~   45 (258)
                      |||+|.|++|.+|+.++..+...++
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~   25 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGH   25 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCC
Confidence            7999999999999999887777765

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.28  E-value=0.077  Score=41.71  Aligned_cols=66  Identities=24%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhh-CCCCEEEE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVII   94 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~-~~aDiVIi   94 (258)
                      +-+..+|+|-|- |.||+.++..|...|.  .|+.+|++... .....+   .    ...+    +.++.+ .+||+++-
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Ga--kvvv~d~d~~~~~~~~~~---g----~~~~----~~~~~~~~~~DI~iP   89 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGA--QLLVADTDTERVAHAVAL---G----HTAV----ALEDVLSTPCDVFAP   89 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---T----CEEC----CGGGGGGCCCSEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEecchHHHHHHHHhh---c----cccc----Cccccccccceeeec
Confidence            456679999997 9999999999999986  89999987642 111111   1    1111    123444 48999988


Q ss_pred             cC
Q 025075           95 PA   96 (258)
Q Consensus        95 ~a   96 (258)
                      ||
T Consensus        90 cA   91 (201)
T d1c1da1          90 CA   91 (201)
T ss_dssp             CS
T ss_pred             cc
Confidence            87

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=94.24  E-value=0.22  Score=39.76  Aligned_cols=112  Identities=16%  Similarity=0.130  Sum_probs=63.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-----hhHHHHHhcCCCCCeEEEEeC-CCc---hHhh---h---
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----PGVTADISHMDTGAVVRGFLG-QPQ---LENA---L---   86 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-----~g~~~dl~~~~~~~~v~~~~~-~~d---~~~a---~---   86 (258)
                      .+.|+||+|.+|..++..|+++|. ..|+|+.++..     .....++....  ..+..+.. -+|   ..+.   +   
T Consensus        11 t~lVTGgs~GIG~a~a~~la~~Ga-~~vvl~~R~~~~~~~~~~~~~~l~~~g--~~v~~~~~Dv~d~~~~~~~~~~i~~~   87 (259)
T d2fr1a1          11 TVLVTGGTGGVGGQIARWLARRGA-PHLLLVSRSGPDADGAGELVAELEALG--ARTTVAACDVTDRESVRELLGGIGDD   87 (259)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC-SEEEEEESSGGGSTTHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHTSCTT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-CEEEEEeCCccCHHHHHHHHHHHHhcc--ccccccccccchHHHHHHhhcccccc
Confidence            689999999999999999999885 46888876431     22222333221  23332221 112   1111   1   


Q ss_pred             CCCCEEEEcCCCCCCCCC---chh---hHHHHhHHHHHHHHHHhhhhCCCcEEEEec
Q 025075           87 TGMDLVIIPAGVPRKPGM---TRD---DLFNINAGIVRTLCEGIAKCCPNATVNLIS  137 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~---~r~---d~~~~n~~i~~~i~~~i~~~~p~a~viv~t  137 (258)
                      ...|.||+.+|.......   +..   ..+.-|+.....+.+.+... +.+.++++|
T Consensus        88 ~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~-~~~~iv~~S  143 (259)
T d2fr1a1          88 VPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTREL-DLTAFVLFS  143 (259)
T ss_dssp             SCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTS-CCSEEEEEE
T ss_pred             ccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhcc-CCceEeeec
Confidence            147788999887543321   211   12445666666666655543 345566555

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.14  E-value=0.16  Score=37.36  Aligned_cols=34  Identities=15%  Similarity=0.187  Sum_probs=29.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +.++|.|||+ |.+|..-+..|...|-  +|.+++..
T Consensus        12 ~gkrvLViGg-G~va~~ka~~Ll~~GA--~VtVvap~   45 (150)
T d1kyqa1          12 KDKRILLIGG-GEVGLTRLYKLMPTGC--KLTLVSPD   45 (150)
T ss_dssp             TTCEEEEEEE-SHHHHHHHHHHGGGTC--EEEEEEEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCC
Confidence            3458999998 9999999999998886  89999653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.12  E-value=0.022  Score=42.78  Aligned_cols=99  Identities=16%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCch----HhhhCCCCE
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQL----ENALTGMDL   91 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~----~~a~~~aDi   91 (258)
                      ..+..+|.|.|+ |.+|...+..+...|.  ++...|.++.+- ...++   .+. .+.. ....|+    .+...+.|.
T Consensus        25 ~~~g~~vlv~G~-G~iG~~a~~~a~~~g~--~v~~~~~~~~r~~~~k~~---Ga~-~~~~-~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          25 AKPGEWVAIYGI-GGLGHVAVQYAKAMGL--NVVAVDIGDEKLELAKEL---GAD-LVVN-PLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             CCTTCEEEEECC-STTHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHT---TCS-EEEC-TTTSCHHHHHHHHHSSEEE
T ss_pred             CCCCCEEEEeec-ccchhhhhHHHhcCCC--eEeccCCCHHHhhhhhhc---Ccc-eecc-cccchhhhhcccccCCCce
Confidence            334458999997 9999998888888876  799998876422 22222   111 1111 112232    233467788


Q ss_pred             EEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           92 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        92 VIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +|++++.+               ..+....   +-..|.+.++++..|.+
T Consensus        97 ~v~~~~~~---------------~~~~~a~---~~l~~~G~i~~~g~~~~  128 (168)
T d1rjwa2          97 AVVTAVSK---------------PAFQSAY---NSIRRGGACVLVGLPPE  128 (168)
T ss_dssp             EEESSCCH---------------HHHHHHH---HHEEEEEEEEECCCCSS
T ss_pred             EEeecCCH---------------HHHHHHH---HHhccCCceEecccccC
Confidence            88876421               1122222   22358888888865543

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=94.11  E-value=0.024  Score=47.50  Aligned_cols=106  Identities=17%  Similarity=0.217  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHh----CCC-----CcEEEEEeCCCC--hhHHHHHhcCC--CCCeEEEEeCCCchH
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKI----NPL-----VSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFLGQPQLE   83 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~----~~~-----~~ei~L~D~~~~--~g~~~dl~~~~--~~~~v~~~~~~~d~~   83 (258)
                      +.+..||+|.|| |.-|..++.+|..    .|+     .+++.++|.+.-  +.. .|+.+..  +....   ....++.
T Consensus        22 ~l~d~kiV~~GA-GsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~kGlv~~~R-~~l~~~k~~~a~~~---~~~~~l~   96 (298)
T d1gq2a1          22 RLSDHTVLFQGA-GEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSKGLIVKGR-ASLTPEKEHFAHEH---CEMKNLE   96 (298)
T ss_dssp             CGGGCCEEEECC-SHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETTEECBTTC-SSCCTTGGGGCBSC---CCCCCHH
T ss_pred             CHHHcEEEEECc-cHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCCCcccCCC-cccCHHHHHHHHHh---hhhhhhH
Confidence            444469999998 9999998876642    343     247999998642  111 1222211  11011   0122445


Q ss_pred             hhhCC--CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           84 NALTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        84 ~a~~~--aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      +.++.  .+++|-+.+.+   |--           -+++.+.+.+.+++.+|+-.|||..
T Consensus        97 ~~i~~vkptvliG~s~~~---g~f-----------t~evv~~ma~~~~~PIIFaLSNPt~  142 (298)
T d1gq2a1          97 DIVKDIKPTVLIGVAAIG---GAF-----------TQQILQDMAAFNKRPIIFALSNPTS  142 (298)
T ss_dssp             HHHHHHCCSEEEECSCCT---TCS-----------CHHHHHHHHHHCSSCEEEECCSSGG
T ss_pred             HHhhccChheeEeccccc---CcC-----------CHHHHHHHHhhCCCCEEEEccCCCC
Confidence            55543  56776665543   321           1456677888899999999999965

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.09  E-value=0.019  Score=47.68  Aligned_cols=35  Identities=20%  Similarity=0.165  Sum_probs=31.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      |.+|+|||| |..|.++|..|++.|.  +|.++|.+..
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~--~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNK--KVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTC--CEEEECSSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCC--cEEEEECCCC
Confidence            458999998 9999999999998887  8999998764

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.08  E-value=0.052  Score=42.68  Aligned_cols=103  Identities=18%  Similarity=0.303  Sum_probs=61.5

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCc-EEEEEeCCCChhHHHHHhcCCCCCeEEE---------------------EeCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVS-VLHLYDVVNTPGVTADISHMDTGAVVRG---------------------FLGQ   79 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~-ei~L~D~~~~~g~~~dl~~~~~~~~v~~---------------------~~~~   79 (258)
                      +|-|||- |.-|..++..+...++.+ +++.+|.|..     +|.......++..                     ....
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~-----~L~~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~   76 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQ-----ALKNIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDR   76 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTG-----GGSSCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHH-----HHhcCCccceeccccccccCCCCCCChHHHHHHHHHHH
Confidence            6899998 999999999988877532 7888887752     1221111111100                     0001


Q ss_pred             CchHhhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           80 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        80 ~d~~~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..+.+.++++|+||++||.....|       ..-.|++.++++..   +. -++-++|=|-.
T Consensus        77 ~~I~~~l~~~d~vfi~AGlGGGTG-------tgaapviA~~ake~---g~-lvvaivtlPF~  127 (198)
T d1ofua1          77 ERISEVLEGADMVFITTGMGGGTG-------TGAAPIIAEVAKEM---GI-LTVAVVTRPFP  127 (198)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSSHH-------HHHHHHHHHHHHHT---TC-EEEEEEEECCG
T ss_pred             HHHHHHhCCCCeEEEEecCCCCcc-------ccHHHHHHHHHHHc---CC-CEEEEEecchH
Confidence            234677899999999998764333       23356666666543   21 24555666755

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.96  E-value=0.068  Score=40.41  Aligned_cols=73  Identities=11%  Similarity=0.090  Sum_probs=46.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcC---CCCCeEEEEeCCCchHhhhCCCCEEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM---DTGAVVRGFLGQPQLENALTGMDLVI   93 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~---~~~~~v~~~~~~~d~~~a~~~aDiVI   93 (258)
                      +..||+++|-...|..+++..|..-|.  ++.+.-...-  .....+....   .....+..   +.|+.+++++||+|.
T Consensus         3 ~gl~Ia~VGD~~nv~~Sli~~l~~~g~--~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~---~~d~~ea~~~adviy   77 (163)
T d1pvva2           3 KGVKVVYVGDGNNVAHSLMIAGTKLGA--DVVVATPEGYEPDEKVIKWAEQNAAESGGSFEL---LHDPVKAVKDADVIY   77 (163)
T ss_dssp             TTCEEEEESCCCHHHHHHHHHHHHTTC--EEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEE---ESCHHHHTTTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC--eEEEecccccCCChHHHHHHHHhhhcccceEEE---ecCHHHHhhhccEEe
Confidence            346999999856777888888887786  8898876431  1111111110   01123332   357889999999988


Q ss_pred             EcC
Q 025075           94 IPA   96 (258)
Q Consensus        94 i~a   96 (258)
                      .+-
T Consensus        78 ~~~   80 (163)
T d1pvva2          78 TDV   80 (163)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            763

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.89  E-value=0.071  Score=37.70  Aligned_cols=34  Identities=9%  Similarity=0.100  Sum_probs=30.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..+|+|||+ |.+|.-+|..|...+.  ++.+++..+
T Consensus        22 ~~~vvVvGg-G~ig~E~A~~l~~~g~--~vt~i~~~~   55 (121)
T d1mo9a2          22 GSTVVVVGG-SKTAVEYGCFFNATGR--RTVMLVRTE   55 (121)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcch--hheEeeccc
Confidence            469999998 9999999999998886  899999865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.89  E-value=0.12  Score=38.75  Aligned_cols=75  Identities=17%  Similarity=0.167  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh------CCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL------TGM   89 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~a   89 (258)
                      ..+.-+|.|+|++|.+|...+..+...|. .+|+..|.++.+. .+.++.   ....+.  ....|+.+.+      ++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~-~~V~~~~~~~~~~~~~~~~G---a~~~i~--~~~~~~~~~~~~~~~~~~~   98 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSG-ATIIGVDVREEAVEAAKRAG---ADYVIN--ASMQDPLAEIRRITESKGV   98 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTC-CEEEEEESSHHHHHHHHHHT---CSEEEE--TTTSCHHHHHHHHTTTSCE
T ss_pred             CCCCCEEEEEeccccceeeeeeccccccc-ccccccccchhhHHHHHHcC---Cceeec--cCCcCHHHHHHHHhhcccc
Confidence            33445899999779999988887777664 3899999876432 222222   111111  1123333332      468


Q ss_pred             CEEEEcCC
Q 025075           90 DLVIIPAG   97 (258)
Q Consensus        90 DiVIi~ag   97 (258)
                      |+||.++|
T Consensus        99 d~vid~~g  106 (170)
T d1jvba2          99 DAVIDLNN  106 (170)
T ss_dssp             EEEEESCC
T ss_pred             hhhhcccc
Confidence            99999876

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=93.87  E-value=0.1  Score=42.42  Aligned_cols=114  Identities=25%  Similarity=0.260  Sum_probs=71.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP   99 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag~~   99 (258)
                      ..||++||- -    .+...+...+.  ++..+|+++..+   |+            . ..+.++.+..||+||+|+   
T Consensus       122 g~kV~vIG~-~----P~v~~l~~~~~--~~~VlE~~p~~g---d~------------p-~~~~~~lLp~aD~viiTG---  175 (251)
T d2h1qa1         122 GKKVGVVGH-F----PHLESLLEPIC--DLSILEWSPEEG---DY------------P-LPASEFILPECDYVYITC---  175 (251)
T ss_dssp             TSEEEEESC-C----TTHHHHHTTTS--EEEEEESSCCTT---CE------------E-GGGHHHHGGGCSEEEEET---
T ss_pred             CCEEEEEec-c----hhHHHHHhcCC--cEEEEeCCCCCC---CC------------C-chHHHHhhhcCCEEEEEe---
Confidence            359999986 1    44445555554  899999876421   11            1 123467899999999996   


Q ss_pred             CCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEEeeccHHHHHHHHHH
Q 025075          100 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAE  179 (258)
Q Consensus       100 ~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~t~lds~R~~~~la~  179 (258)
                                    ..++-.=.+.|-++++++..+++.-|...+.+.   ++ +.   .-+.+=|+...|..++.+.+++
T Consensus       176 --------------sTlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~---lf-~~---Gv~~lag~~v~d~~~~~~~i~~  234 (251)
T d2h1qa1         176 --------------ASVVDKTLPRLLELSRNARRITLVGPGTPLAPV---LF-EH---GLQELSGFMVKDNARAFRIVAG  234 (251)
T ss_dssp             --------------HHHHHTCHHHHHHHTTTSSEEEEESTTCCCCGG---GG-GT---TCSEEEEEEESCHHHHHHHHTT
T ss_pred             --------------chhhcCCHHHHHHhCCcCCEEEEECCCcccCHH---HH-hc---CCceEeEEEEeCHHHHHHHHHc
Confidence                          223333444555677777656677788776662   23 22   2334445568898888888764


Q ss_pred             H
Q 025075          180 V  180 (258)
Q Consensus       180 ~  180 (258)
                      -
T Consensus       235 G  235 (251)
T d2h1qa1         235 A  235 (251)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.78  E-value=0.027  Score=43.24  Aligned_cols=33  Identities=21%  Similarity=0.226  Sum_probs=29.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      -|+|||| |.-|.+.|..|++.|+  +|.++|.+..
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~--~V~vlE~~~~   39 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGK--KVLHIDKQDH   39 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--CEEEEcCCCC
Confidence            3899998 9999999999999998  8999999763

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.72  E-value=0.69  Score=33.58  Aligned_cols=35  Identities=20%  Similarity=0.343  Sum_probs=25.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ||+|+|++|.+|+.++..+...+-..=+..+|...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~   35 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD   35 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence            79999999999999988776654443344566543

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.72  E-value=0.5  Score=38.48  Aligned_cols=115  Identities=13%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             CeEEE-EcCCCchHHHHHHHHHhCCCCcEEEEEe---CCCC-hhHHHHHhcC--CCCCeEEEEe-CCCch---Hhhh---
Q 025075           21 FKVAI-LGAAGGIGQPLAMLMKINPLVSVLHLYD---VVNT-PGVTADISHM--DTGAVVRGFL-GQPQL---ENAL---   86 (258)
Q Consensus        21 ~KI~I-IGa~G~VG~~~a~~L~~~~~~~ei~L~D---~~~~-~g~~~dl~~~--~~~~~v~~~~-~~~d~---~~a~---   86 (258)
                      +||++ +||++.+|.+++..|+..|.  .+++++   .+.+ .....+....  .....+..+. .-+|.   ++.+   
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga--~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~   79 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPS--QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERV   79 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT--CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTC
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCC--CeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhc
Confidence            47765 59999999999999999885  444443   3322 1111111111  1111222221 11222   1111   


Q ss_pred             --CCCCEEEEcCCCCCCCCC---ch---hhHHHHhH----HHHHHHHHHhhhhCCCcEEEEecC
Q 025075           87 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        87 --~~aDiVIi~ag~~~~~g~---~r---~d~~~~n~----~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                        ...|++|..+|.......   +.   ...+.-|+    ...+.+.+.+.+.. .+.||++|.
T Consensus        80 ~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~-~G~Iv~isS  142 (285)
T d1jtva_          80 TEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRG-SGRVLVTGS  142 (285)
T ss_dssp             TTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEE
T ss_pred             cccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcC-CCceEEEec
Confidence              368999999886433221   11   22334443    46677778887765 466666653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.67  E-value=0.028  Score=45.46  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=28.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|+|||| |.+|.++|+.|+++|+  +|+++|...
T Consensus         5 DvvIIGa-Gi~Gls~A~~La~~G~--~V~viE~~~   36 (281)
T d2gf3a1           5 DVIVVGA-GSMGMAAGYQLAKQGV--KTLLVDAFD   36 (281)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            4899998 9999999999999997  899999753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.57  E-value=0.27  Score=37.88  Aligned_cols=111  Identities=13%  Similarity=0.124  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhh------CCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL------TGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aDiV   92 (258)
                      +..+|.|+|+ |.+|...+..+...+. ..|+..|.++.+   +++..... ..........++.+.+      .++|++
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga-~~Vi~~d~~~~r---l~~a~~~G-a~~~~~~~~~~~~~~i~~~t~g~g~D~v   98 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGA-AVVIVGDLNPAR---LAHAKAQG-FEIADLSLDTPLHEQIAALLGEPEVDCA   98 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEEESCHHH---HHHHHHTT-CEEEETTSSSCHHHHHHHHHSSSCEEEE
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcc-cceeeecccchh---hHhhhhcc-ccEEEeCCCcCHHHHHHHHhCCCCcEEE
Confidence            3348999998 9999887777766664 589999987642   22222111 1111111123443332      369999


Q ss_pred             EEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           93 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        93 Ii~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      |-+.|.+........-....+.+.+.+..+.+   .|.+.++++.-
T Consensus        99 id~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~---r~gG~v~~~G~  141 (195)
T d1kola2          99 VDAVGFEARGHGHEGAKHEAPATVLNSLMQVT---RVAGKIGIPGL  141 (195)
T ss_dssp             EECCCTTCBCSSTTGGGSBCTTHHHHHHHHHE---EEEEEEEECSC
T ss_pred             EECccccccCCcccceeecCcHHHHHHHHHHH---hcCCEEEEeee
Confidence            99988543211100000001122233333333   48888887753

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=93.48  E-value=0.11  Score=41.37  Aligned_cols=73  Identities=12%  Similarity=0.261  Sum_probs=39.9

Q ss_pred             CCCCCeEEEEcCCCc----hHHHHHHHHHh-CCCCcEEE-EEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhC--C
Q 025075           17 GAAGFKVAILGAAGG----IGQPLAMLMKI-NPLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--G   88 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~----VG~~~a~~L~~-~~~~~ei~-L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~--~   88 (258)
                      +.+++||+|||+ |.    ++......+.. .+.+ +|+ ++|++.+.....--.. ... ....+   .|+++.++  +
T Consensus        13 ~~k~irvgiIG~-G~~~~~~~~~h~~ai~~~~~~~-~ivav~d~~~~~~~~~~~~~-~~~-~~~~~---~~~~~l~~~~~   85 (237)
T d2nvwa1          13 SSRPIRVGFVGL-TSGKSWVAKTHFLAIQQLSSQF-QIVALYNPTLKSSLQTIEQL-QLK-HATGF---DSLESFAQYKD   85 (237)
T ss_dssp             GGCCEEEEEECC-CSTTSHHHHTHHHHHHHTTTTE-EEEEEECSCHHHHHHHHHHT-TCT-TCEEE---SCHHHHHHCTT
T ss_pred             CCCCeEEEEEec-CccccHHHHHHHHHHHhcCCCe-EEEEEEcCCHHHHHHHHHhc-ccc-cceee---cchhhcccccc
Confidence            356689999997 76    44444455544 3333 555 8898765322210011 111 12222   35666664  6


Q ss_pred             CCEEEEcC
Q 025075           89 MDLVIIPA   96 (258)
Q Consensus        89 aDiVIi~a   96 (258)
                      .|+|+++.
T Consensus        86 iD~V~i~t   93 (237)
T d2nvwa1          86 IDMIVVSV   93 (237)
T ss_dssp             CSEEEECS
T ss_pred             cceeeccC
Confidence            78888874

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.46  E-value=0.05  Score=43.50  Aligned_cols=35  Identities=20%  Similarity=0.318  Sum_probs=30.2

Q ss_pred             Ce-EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           21 FK-VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        21 ~K-I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      || |.|+||++.+|.+++..|++.|.  +|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga--~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGH--QIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC--EEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECChH
Confidence            45 46779999999999999999998  8999998763

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=93.14  E-value=0.12  Score=38.73  Aligned_cols=37  Identities=24%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~   56 (258)
                      +|++|+|+|++|+||......+.+.+ .+ +|..+--+.
T Consensus         1 ~pK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~   38 (150)
T d1r0ka2           1 QPRTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANR   38 (150)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCC
Confidence            35799999999999999887776543 12 555555443

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.09  E-value=0.052  Score=40.86  Aligned_cols=71  Identities=23%  Similarity=0.266  Sum_probs=45.0

Q ss_pred             CCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCCC---hhHH---HHHhcCCCCCeEEEEeCCCchHhhhCCCCEE
Q 025075           20 GFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVT---ADISHMDTGAVVRGFLGQPQLENALTGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa-~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g~~---~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiV   92 (258)
                      ..||+++|= ...|-.+++..+..-|.  ++.+.-...-   ....   .++... ....+..   ++|++++++++|+|
T Consensus         3 g~ki~~vGD~~nnV~~Sli~~~~~~g~--~i~~~~P~~~~~~~~~~~~~~~~~~~-~~~~i~~---~~d~~~ai~~aDvi   76 (161)
T d1vlva2           3 GVKVVFMGDTRNNVATSLMIACAKMGM--NFVACGPEELKPRSDVFKRCQEIVKE-TDGSVSF---TSNLEEALAGADVV   76 (161)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHTTC--EEEEESCGGGCCCHHHHHHHHHHHHH-HCCEEEE---ESCHHHHHTTCSEE
T ss_pred             CCEEEEEcCCccHHHHHHHHHHHHcCC--EEEEecchhhhhhhhHHHHHHHHHhh-cCCceEE---EecHHHhhhhhhhe
Confidence            359999993 24688888888888887  8888865321   1111   111111 1123432   46889999999999


Q ss_pred             EEcC
Q 025075           93 IIPA   96 (258)
Q Consensus        93 Ii~a   96 (258)
                      ....
T Consensus        77 yt~~   80 (161)
T d1vlva2          77 YTDV   80 (161)
T ss_dssp             EECC
T ss_pred             eccc
Confidence            8763

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=93.04  E-value=0.3  Score=36.50  Aligned_cols=95  Identities=15%  Similarity=0.156  Sum_probs=54.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCc-hHhhh-----CCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d-~~~a~-----~~aDiVIi   94 (258)
                      -.|.|+|+ |.+|...+..+...|. ..++..|.++.+   +++........+  +..+.| +++..     ++.|+||.
T Consensus        34 ~~vli~Ga-G~vG~~~~~~a~~~g~-~~vv~~~~~~~k---~~~~~~~ga~~~--i~~~~~~~~~~~~~~~~~g~d~vid  106 (172)
T d1h2ba2          34 AYVAIVGV-GGLGHIAVQLLKVMTP-ATVIALDVKEEK---LKLAERLGADHV--VDARRDPVKQVMELTRGRGVNVAMD  106 (172)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCC-CEEEEEESSHHH---HHHHHHTTCSEE--EETTSCHHHHHHHHTTTCCEEEEEE
T ss_pred             CEEEEeCC-ChHHHHHHHHHHhhcC-cccccccchhHH---HHHHhhccccee--ecCcccHHHHHHHhhCCCCceEEEE
Confidence            47999997 9999998887776664 378888987642   222211111111  122222 22222     36899999


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV  140 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv  140 (258)
                      ++|.+               ..   +-..+.-..|.+.++++..|.
T Consensus       107 ~~g~~---------------~~---~~~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         107 FVGSQ---------------AT---VDYTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             SSCCH---------------HH---HHHGGGGEEEEEEEEECCCSS
T ss_pred             ecCcc---------------hH---HHHHHHHHhCCCEEEEEeCcc
Confidence            98632               11   122233345888888876543

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.037  Score=48.65  Aligned_cols=34  Identities=29%  Similarity=0.552  Sum_probs=30.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||.|||+ |.+|+.++..|+..|+ ++|.|+|-|.
T Consensus        38 ~kVlvvG~-GglG~ei~k~L~~~Gv-g~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGA-GGLGCELLKNLALSGF-RQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECS-STTHHHHHHHHHTTTC-CCEEEECCCB
T ss_pred             CeEEEECC-CHHHHHHHHHHHHcCC-CeEEEEECCC
Confidence            48999998 9999999999999986 6899999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.99  E-value=0.064  Score=38.74  Aligned_cols=36  Identities=19%  Similarity=0.278  Sum_probs=31.2

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ..+.+++|||+ |.+|.-+|..+...|.  ++.+++..+
T Consensus        24 ~~p~~vvIiGg-G~IG~E~A~~~~~~G~--~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGG-GIIGLEMGTVYSTLGS--RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             ccCCeEEEECC-CHHHHHHHHHhhcCCC--EEEEEEeec
Confidence            33569999998 9999999999998887  999998755

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.92  E-value=0.066  Score=41.40  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             CCCeEEEEcC-CCchHHHHHHHHHhCCCCcEEEEEeCCCC---hh---HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCE
Q 025075           19 AGFKVAILGA-AGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG---VTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        19 ~~~KI~IIGa-~G~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      +..||++||= ...|..+++..+...|.  ++.+.-...-   ..   .+.++... ....+..   ++|++++++++|+
T Consensus         4 ~~lkia~vGD~~nnV~~Sli~~~~~~G~--~l~l~~P~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~d~~eai~~aDv   77 (185)
T d1dxha2           4 HDISYAYLGDARNNMGNSLLLIGAKLGM--DVRIAAPKALWPHDEFVAQCKKFAEE-SGAKLTL---TEDPKEAVKGVDF   77 (185)
T ss_dssp             GGCEEEEESCCSSHHHHHHHHHHHHTTC--EEEEECCGGGSCCHHHHHHHHHHHHH-HTCEEEE---ESCHHHHTTTCSE
T ss_pred             CCCEEEEEcCCcchHHHHHHHHHHHcCC--EEEEEccHHHHhhhHHHHHHHHHhhc-cCCeEEE---EeChhhccccccE
Confidence            3469999994 23788888888888887  8999876331   11   11111111 1123332   4678999999999


Q ss_pred             EEEcC
Q 025075           92 VIIPA   96 (258)
Q Consensus        92 VIi~a   96 (258)
                      |....
T Consensus        78 Vyt~~   82 (185)
T d1dxha2          78 VHTDV   82 (185)
T ss_dssp             EEECC
T ss_pred             EEeeh
Confidence            87753

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.92  E-value=0.036  Score=40.26  Aligned_cols=88  Identities=11%  Similarity=0.123  Sum_probs=52.6

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhC-CCCEEEEcC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA   96 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~-~aDiVIi~a   96 (258)
                      ++.+|+|+|| |..|..++..+....-..-+.++|-++. .|...  .      .+.++. ..++++..+ ..++++++.
T Consensus         2 ~~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I--~------Gi~V~~-~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           2 RKWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGRPV--R------GGVIEH-VDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             SCEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE--T------TEEEEE-GGGHHHHSTTTCCEEEECS
T ss_pred             CCceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE--C------CEEEec-HHHHHHHHhhcccEEEEeC
Confidence            3468999998 9999999876654444467889998774 22211  1      233332 334544433 456666654


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAT  132 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~  132 (258)
                      .                ....+++++.+.+++-+++
T Consensus        72 ~----------------~~~~~~I~d~l~~~gIk~I   91 (126)
T d2dt5a2          72 P----------------REAAQKAADLLVAAGIKGI   91 (126)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCCEE
T ss_pred             C----------------HHHHHHHHHHHHHcCCCEE
Confidence            1                1223567777777775543

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.90  E-value=0.051  Score=39.03  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .|.+++|||+ |.+|.-+|..+...|.  +|.++.+.+
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~--~Vtvi~~~~   58 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGS--EVTVVEFAS   58 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCC--eEEEEEEcc
Confidence            3569999998 9999999999999887  999998865

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.83  E-value=0.03  Score=42.83  Aligned_cols=36  Identities=25%  Similarity=0.219  Sum_probs=30.1

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+..+|+|||+ |..|...|..+++.++  +++++|...
T Consensus         3 ~k~~dVvIIGG-GpaGl~AA~~~ar~g~--~v~iie~~~   38 (190)
T d1trba1           3 TKHSKLLILGS-GPAGYTAAVYAARANL--QPVLITGME   38 (190)
T ss_dssp             EEEEEEEEECC-SHHHHHHHHHHHTTTC--CCEEECCSS
T ss_pred             CCCCcEEEECC-CHHHHHHHHHHHHcCC--ceEEEEeec
Confidence            34568999998 9999999999999887  788888543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.72  E-value=0.25  Score=37.58  Aligned_cols=78  Identities=19%  Similarity=0.154  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHh-cCC----CCCeEE-----EEeCCCchHhhhCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADIS-HMD----TGAVVR-----GFLGQPQLENALTGM   89 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~-~~~----~~~~v~-----~~~~~~d~~~a~~~a   89 (258)
                      |.||+|-|- |.+|..++..+..++-++-+.+-|+.+......-+. +..    ......     .+....++.+.++++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            569999997 999999998887777554445556654321111111 110    000000     001123456678899


Q ss_pred             CEEEEcCCC
Q 025075           90 DLVIIPAGV   98 (258)
Q Consensus        90 DiVIi~ag~   98 (258)
                      |+||-|.|.
T Consensus        80 DvViEcTG~   88 (171)
T d1cf2o1          80 DIVIDCTPE   88 (171)
T ss_dssp             SEEEECCST
T ss_pred             CEEEEccCC
Confidence            999999764

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=92.68  E-value=0.34  Score=38.37  Aligned_cols=69  Identities=13%  Similarity=0.067  Sum_probs=40.2

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCC---CcEEEEEeCCCC---hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPL---VSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~---~~ei~L~D~~~~---~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi   94 (258)
                      +||+|||- |.-|.+-|.+|...|+   .+--+.+-.++.   ...+.  .+..-......    .+.+|+.+.||+|.+
T Consensus        45 KkIaViGY-GsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~--~dGf~v~~~~v----~~v~EAv~~ADiVmi  117 (226)
T d1qmga2          45 KQIGVIGW-GSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEAR--AAGFSEENGTL----GDMWETISGSDLVLL  117 (226)
T ss_dssp             SEEEEECC-SSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHH--HTTCCGGGTCE----EEHHHHHHTCSEEEE
T ss_pred             CEEEEEEe-ccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHH--HcCCccCCCcc----cCHHHHHhhCCEEEE
Confidence            38999998 9999999999998552   011122332221   22221  22211111111    134689999999999


Q ss_pred             cC
Q 025075           95 PA   96 (258)
Q Consensus        95 ~a   96 (258)
                      +.
T Consensus       118 Ll  119 (226)
T d1qmga2         118 LI  119 (226)
T ss_dssp             CS
T ss_pred             ec
Confidence            85

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.67  E-value=0.19  Score=35.84  Aligned_cols=94  Identities=14%  Similarity=0.027  Sum_probs=55.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeC-CCc---hH-hhhCCCCEEEEcC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LE-NALTGMDLVIIPA   96 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~-~~d---~~-~a~~~aDiVIi~a   96 (258)
                      +|.|+|. |.+|..++..|...    +++++|.++.....+  .....    ..+.+ .++   |. ..+..|+.+|++.
T Consensus         2 HivI~G~-g~~g~~l~~~L~~~----~i~vi~~d~~~~~~~--~~~~~----~~i~Gd~~~~~~L~~a~i~~A~~vi~~~   70 (129)
T d2fy8a1           2 HVVICGW-SESTLECLRELRGS----EVFVLAEDENVRKKV--LRSGA----NFVHGDPTRVSDLEKANVRGARAVIVNL   70 (129)
T ss_dssp             CEEEESC-CHHHHHHHHTSCGG----GEEEEESCTTHHHHH--HHTTC----EEEESCTTSHHHHHHTTCTTCSEEEECC
T ss_pred             EEEEECC-CHHHHHHHHHHcCC----CCEEEEcchHHHHHH--HhcCc----cccccccCCHHHHHHhhhhcCcEEEEec
Confidence            6899998 99999999888533    578889887643322  22211    11122 122   21 2267899999875


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-cCCCC
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVN  141 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNPvd  141 (258)
                      .      .+     ..|+.    ++..+++.+|+..++.. .+|-.
T Consensus        71 ~------~d-----~~n~~----~~~~~r~~~~~~~iia~~~~~~~  101 (129)
T d2fy8a1          71 E------SD-----SETIH----CILGIRKIDESVRIIAEAERYEN  101 (129)
T ss_dssp             S------SH-----HHHHH----HHHHHHHHCSSSCEEEECSSGGG
T ss_pred             c------ch-----hhhHH----HHHHHHHHCCCceEEEEEcCHHH
Confidence            2      11     23443    34456777898765554 45554

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.57  E-value=0.052  Score=42.91  Aligned_cols=33  Identities=24%  Similarity=0.212  Sum_probs=30.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      -|+|||| |..|...|..|++.|+  +|.|+|.+..
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~--~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGA--NVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCCC
Confidence            4999998 9999999999999998  8999998764

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.56  E-value=0.12  Score=38.59  Aligned_cols=62  Identities=13%  Similarity=0.156  Sum_probs=41.7

Q ss_pred             CCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa--~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      .+||+++|=  .+.|..+++..+..-|.  ++.+.....       +...  ...+..   ..|++++++++|+|..+
T Consensus         3 gl~i~~vGD~~~srv~~Sl~~~~~~~g~--~~~i~~P~~-------~~~~--~~~~~~---~~~~~ea~~~aDviy~~   66 (151)
T d2at2a2           3 GLTVSIHGDIKHSRVARSNAEVLTRLGA--RVLFSGPSE-------WQDE--ENTFGT---YVSMDEAVESSDVVMLL   66 (151)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHcCC--cccccCCch-------hhcc--ccceeE---EEechhccccCceeeee
Confidence            369999996  45699999988888776  677765432       1100  012222   24667999999998776

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=92.45  E-value=0.91  Score=36.13  Aligned_cols=32  Identities=25%  Similarity=0.266  Sum_probs=27.4

Q ss_pred             EE-EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           23 VA-ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        23 I~-IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |+ |+||++.+|.+++..|+..|.  +|++.|.+.
T Consensus         4 VAlITGas~GIG~aiA~~la~~Ga--~V~i~~~~~   36 (284)
T d1e7wa_           4 VALVTGAAKRLGRSIAEGLHAEGY--AVCLHYHRS   36 (284)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCC--EEEEEeCCC
Confidence            55 559989999999999999997  899888765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=92.45  E-value=0.065  Score=42.27  Aligned_cols=34  Identities=21%  Similarity=0.389  Sum_probs=30.8

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ++.|+||++.+|.+++..|++.|.  +|++.|++++
T Consensus         3 ~alITGas~GIG~aiA~~la~~Ga--~V~i~~~~~~   36 (241)
T d1uaya_           3 SALVTGGASGLGRAAALALKARGY--RVVVLDLRRE   36 (241)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTC--EEEEEESSCC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCcc
Confidence            577889999999999999999997  8999999874

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.37  E-value=0.24  Score=37.92  Aligned_cols=63  Identities=25%  Similarity=0.308  Sum_probs=42.8

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC-hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~-~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +||+|||- |.-|.+-|.+|...|+  +|++ -..+. .....--.+. +  .+      .+++|+.+.||+|.+..
T Consensus        17 k~IaViGY-GsQG~AhAlNLrDSG~--~V~V-GLr~gs~s~~~A~~~G-f--~v------~~~~eA~~~aDiim~L~   80 (182)
T d1np3a2          17 KKVAIIGY-GSQGHAHACNLKDSGV--DVTV-GLRSGSATVAKAEAHG-L--KV------ADVKTAVAAADVVMILT   80 (182)
T ss_dssp             SCEEEECC-SHHHHHHHHHHHHTTC--CEEE-ECCTTCHHHHHHHHTT-C--EE------ECHHHHHHTCSEEEECS
T ss_pred             CEEEEEee-CcHhHHHHhhhhhcCC--CEEE-EcCCCCccHHHHhhhc-c--cc------ccHHHHhhhcCeeeeec
Confidence            58999998 9999999999999998  5444 33332 2211111221 1  22      24579999999999985

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.22  E-value=0.61  Score=33.49  Aligned_cols=84  Identities=14%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             CCeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcC
Q 025075           20 GFKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA   96 (258)
Q Consensus        20 ~~KI~IIGa~---G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~a   96 (258)
                      +..|+||||+   +..|..+...|...+ -++|+.+.....  +   +.      .+..+   .++.+.=...|+++++.
T Consensus         8 PksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~--~---i~------G~~~y---~sl~dlp~~vDlvvi~v   72 (129)
T d2csua1           8 PKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEE--E---VQ------GVKAY---KSVKDIPDEIDLAIIVV   72 (129)
T ss_dssp             CSEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCS--E---ET------TEECB---SSTTSCSSCCSEEEECS
T ss_pred             CCeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcc--c---cC------CeEee---cchhhcCCCCceEEEec
Confidence            4589999997   788888888876654 458888866432  1   11      11111   23333224689999875


Q ss_pred             CCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEE
Q 025075           97 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN  134 (258)
Q Consensus        97 g~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~vi  134 (258)
                      .                .+.+.++.+++.+.+-.+.++
T Consensus        73 p----------------~~~~~~~~~~~~~~g~~~~vi   94 (129)
T d2csua1          73 P----------------KRFVKDTLIQCGEKGVKGVVI   94 (129)
T ss_dssp             C----------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred             C----------------hHHhHHHHHHHHHcCCCEEEE
Confidence            2                334556666777777665554

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.14  E-value=0.061  Score=43.85  Aligned_cols=31  Identities=23%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |+|||| |..|.+.|..|.+.|+  +|.++|...
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~--~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGL--NVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCC--CEEEEecCC
Confidence            799998 9999999999999998  899999754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.12  E-value=0.43  Score=35.66  Aligned_cols=40  Identities=23%  Similarity=0.292  Sum_probs=31.7

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP   58 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~   58 (258)
                      ..+-.+|.|+|+ |.+|...+..+...+. ..|+..|+++.+
T Consensus        26 vk~GdtVlV~Ga-GG~G~~~~~~~~~~g~-~~Vi~~~~~~~k   65 (176)
T d2jhfa2          26 VTQGSTCAVFGL-GGVGLSVIMGCKAAGA-ARIIGVDINKDK   65 (176)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGG
T ss_pred             CCCCCEEEEECC-CCcHHHHHHHHHHcCC-ceEEeecCcHHH
Confidence            334458999998 9999999888887764 489999998764

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.11  E-value=0.57  Score=35.22  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhh-h-----CCCCEEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA-L-----TGMDLVI   93 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a-~-----~~aDiVI   93 (258)
                      -..|.|.||+|.||...+......|.  +++..+.++++...  +...... .+-. ..+.++.+. +     ++.|+|+
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~Ga--~vi~~~~~~~~~~~--~~~~Ga~-~vi~-~~~~~~~~~~~~~~~~~Gvd~v~  103 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLKGC--KVVGAAGSDEKIAY--LKQIGFD-AAFN-YKTVNSLEEALKKASPDGYDCYF  103 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHTTC--EEEEEESSHHHHHH--HHHTTCS-EEEE-TTSCSCHHHHHHHHCTTCEEEEE
T ss_pred             CCEEEEEeCCCchhHHHHHHHHccCC--EEEEeCCCHHHHHH--HHhhhhh-hhcc-cccccHHHHHHHHhhcCCCceeE
Confidence            34799999999999999998888886  77777765433222  1222221 1211 112222222 2     5799999


Q ss_pred             EcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecC
Q 025075           94 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN  138 (258)
Q Consensus        94 i~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tN  138 (258)
                      -+.|-                +.+.   ..+.-..|++.++++.+
T Consensus       104 D~vG~----------------~~~~---~~~~~l~~~G~~v~~G~  129 (182)
T d1v3va2         104 DNVGG----------------EFLN---TVLSQMKDFGKIAICGA  129 (182)
T ss_dssp             ESSCH----------------HHHH---HHGGGEEEEEEEEECCC
T ss_pred             EecCc----------------hhhh---hhhhhccCCCeEEeecc
Confidence            98751                1122   23334458889988865

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=92.01  E-value=0.35  Score=35.78  Aligned_cols=70  Identities=13%  Similarity=0.062  Sum_probs=41.4

Q ss_pred             CCeEEEEcCCCc--hHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAGG--IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G~--VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..||++||=..+  |..+++..+..-|.  +++++-..+......++... ....+..   ++|+++++++||+|..+
T Consensus         3 gl~i~~vGD~~~sRv~~Sl~~~l~~~g~--~~~~~~p~~~~~~~~~~~~~-~~~~~~~---~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           3 GLVFALLGDLKYARTVNSLLRILTRFRP--KLVYLISPQLLRARKEILDE-LNYPVKE---VENPFEVINEVDVLYVT   74 (153)
T ss_dssp             TCEEEEEECCSSCHHHHHHHHHGGGSCC--SEEEEECCGGGCCCHHHHTT-CCSCEEE---ESCGGGTGGGCSEEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHHHcCC--eeEEEecccccccchhhccc-CCCeEEE---EeCHHHHhhcCCeEEEe
Confidence            369999997223  89999988888776  44444332210000111111 1223443   35778999999988766

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.68  E-value=0.094  Score=38.76  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      ||+|||| |++|..+|..|.. +.  +|.+++...
T Consensus         2 rVvIIGg-G~~G~e~A~~l~~-~~--~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLSQ-TY--EVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHTT-TS--EEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHHc-CC--CEEEEeccc
Confidence            8999998 9999999988865 33  899998643

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.35  E-value=1.2  Score=31.23  Aligned_cols=81  Identities=9%  Similarity=0.085  Sum_probs=50.1

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~---G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      ++|+||||+   +..|..+...|...|+  +|+.+..+.+  .   +.      .+..+   .++.+.=...|+++++..
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~--~V~pVnP~~~--~---i~------G~~~y---~sl~~lp~~~D~vvi~vp   65 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGF--EVLPVNPNYD--E---IE------GLKCY---RSVRELPKDVDVIVFVVP   65 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTC--EEEEECTTCS--E---ET------TEECB---SSGGGSCTTCCEEEECSC
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCC--EEEEEccccc--c---cc------Ccccc---ccchhccccceEEEEEeC
Confidence            379999986   5788888889999998  7888865321  1   11      11111   234333346699998752


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEE
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATV  133 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~v  133 (258)
                                      .+.+.++.+++.+.++++++
T Consensus        66 ----------------~~~~~~~l~~~~~~g~k~v~   85 (116)
T d1y81a1          66 ----------------PKVGLQVAKEAVEAGFKKLW   85 (116)
T ss_dssp             ----------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             ----------------HHHHHHHHHHHHhcCCceEE
Confidence                            33345566666667777544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.34  Score=36.21  Aligned_cols=71  Identities=17%  Similarity=0.054  Sum_probs=46.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh------CCCCEE
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL------TGMDLV   92 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~------~~aDiV   92 (258)
                      ..+|.|+||+|.+|...+..+...|.  +++..|.++++- ...++.   .. .+-. ..+.|+.+.+      ++.|+|
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~Ga--~Vi~~~~s~~k~~~~~~lG---a~-~vi~-~~~~d~~~~v~~~t~g~g~d~v  101 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKALGA--KLIGTVGTAQKAQSALKAG---AW-QVIN-YREEDLVERLKEITGGKKVRVV  101 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHHTC--EEEEEESSHHHHHHHHHHT---CS-EEEE-TTTSCHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEccccccchHHHHHHHHhCC--eEeecccchHHHHHHHhcC---Ce-EEEE-CCCCCHHHHHHHHhCCCCeEEE
Confidence            34899999988899999988888886  889998876532 222232   11 2211 1234555544      357888


Q ss_pred             EEcCC
Q 025075           93 IIPAG   97 (258)
Q Consensus        93 Ii~ag   97 (258)
                      +-+.|
T Consensus       102 ~d~~g  106 (179)
T d1qora2         102 YDSVG  106 (179)
T ss_dssp             EECSC
T ss_pred             EeCcc
Confidence            88865

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=91.16  E-value=0.087  Score=43.37  Aligned_cols=32  Identities=28%  Similarity=0.350  Sum_probs=27.8

Q ss_pred             eEEEEcCCCchHHHHHHHHH-----hCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMK-----INPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~-----~~~~~~ei~L~D~~~   56 (258)
                      -|+|||| |.+|.++|..|+     ..|+  ++.++|..+
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~--~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDL--KVRIIDKRS   45 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTC--CEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCC--cEEEEcCCC
Confidence            4999998 999999999986     4677  899999865

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.92  E-value=0.14  Score=40.75  Aligned_cols=35  Identities=23%  Similarity=0.242  Sum_probs=31.1

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG   59 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g   59 (258)
                      .|.|||| |..|...|..|++.|+  +|.++|.++..+
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~--~V~vlEk~~~~G   40 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGK--SVTVFDNGKKIG   40 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSSSSC
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCCCCC
Confidence            5999998 9999999999999997  899999877533

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.61  E-value=0.22  Score=37.05  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=27.2

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      ..+|+|||+ |.+|.-+|..|...+.-..|.+.+.
T Consensus         3 ~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           3 NDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             SCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            458999998 9999999999998876335655554

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.56  E-value=1.3  Score=31.97  Aligned_cols=115  Identities=10%  Similarity=0.010  Sum_probs=64.7

Q ss_pred             CeEEEEcCC---CchHHHHHHHHHhCCCCcEEEEEeCCCChhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEcCC
Q 025075           21 FKVAILGAA---GGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG   97 (258)
Q Consensus        21 ~KI~IIGa~---G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~ag   97 (258)
                      +.|+|||||   +..|..++..|...|+  .+.++-.+.....   +.      ...   ...++.+.=...|+|+++..
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~g~--~~~~v~~~~~~~~---i~------g~~---~~~~l~~i~~~iD~v~v~~p   79 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQGY--RVLPVNPRFQGEE---LF------GEE---AVASLLDLKEPVDILDVFRP   79 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHTTC--EEEEECGGGTTSE---ET------TEE---CBSSGGGCCSCCSEEEECSC
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcCCC--CceEEEeccccce---ee------cee---cccchhhccCCCceEEEecc
Confidence            479999986   4688888888988898  7888866432111   11      111   11344333356799999852


Q ss_pred             CCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCCCcHHHHHHHHHHhCCCCCCcEEEE-e-eccHHHH
Q 025075           98 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-T-MLDVVRA  173 (258)
Q Consensus        98 ~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd~~~~i~t~~~~~~~~~~~~kviG~-t-~lds~R~  173 (258)
                                      .+.+.++.+++.+.+.+++++.-.--.+    -+.+.+++.+ +   ++++= | ..+..|+
T Consensus        80 ----------------~~~v~~~v~~~~~~g~k~i~~q~G~~~~----e~~~~a~~~G-i---~vV~~~C~~ie~~rl  133 (136)
T d1iuka_          80 ----------------PSALMDHLPEVLALRPGLVWLQSGIRHP----EFEKALKEAG-I---PVVADRCLMVEHKRL  133 (136)
T ss_dssp             ----------------HHHHTTTHHHHHHHCCSCEEECTTCCCH----HHHHHHHHTT-C---CEEESCCHHHHHHHH
T ss_pred             ----------------HHHHHHHHHHHHhhCCCeEEEecCccCH----HHHHHHHHcC-C---EEEcCCccHHHHHHh
Confidence                            2233445555556677765543222222    3345555554 3   67764 6 4555554

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.48  E-value=0.18  Score=35.38  Aligned_cols=34  Identities=15%  Similarity=0.054  Sum_probs=27.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHh---CCCCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKI---NPLVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~---~~~~~ei~L~D~~~   56 (258)
                      +.||+|||+ |.+|.-+|..+..   .|.  +|.+++..+
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~--~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGG--QVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTC--EEEEEESSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhccccc--ccceecccc
Confidence            469999998 9999999876543   344  899998765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.15  E-value=0.82  Score=33.83  Aligned_cols=75  Identities=16%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCch-Hhhh-----CCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQL-ENAL-----TGM   89 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~-~~a~-----~~a   89 (258)
                      .++.-+|+|+|+ |.+|...+..+...+- .+|+..|.++++- .+.++.   ....+. .....+. ++..     .++
T Consensus        26 ~k~g~~VlI~G~-Gg~g~~~~~~~~~~g~-~~Vi~~~~~~~rl~~a~~~G---Ad~~in-~~~~~~~~~~~~~~~~~~G~   99 (175)
T d1cdoa2          26 VEPGSTCAVFGL-GAVGLAAVMGCHSAGA-KRIIAVDLNPDKFEKAKVFG---ATDFVN-PNDHSEPISQVLSKMTNGGV   99 (175)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTC-SEEEEECSCGGGHHHHHHTT---CCEEEC-GGGCSSCHHHHHHHHHTSCB
T ss_pred             CCCCCEEEEEec-CCccchHHHHHHHHhh-chheeecchHHHHHHHHHcC---CcEEEc-CCCcchhHHHHHHhhccCCc
Confidence            444458999998 9999888877776653 4899999987632 233332   111111 1111111 1111     479


Q ss_pred             CEEEEcCC
Q 025075           90 DLVIIPAG   97 (258)
Q Consensus        90 DiVIi~ag   97 (258)
                      |+||.+.|
T Consensus       100 d~vid~~G  107 (175)
T d1cdoa2         100 DFSLECVG  107 (175)
T ss_dssp             SEEEECSC
T ss_pred             ceeeeecC
Confidence            99999986

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.78  E-value=0.24  Score=37.82  Aligned_cols=70  Identities=11%  Similarity=0.221  Sum_probs=44.6

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC---hh---HHHHHhcCCCCCeEEEEeCCCchHhhhCCCCE
Q 025075           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT---PG---VTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        20 ~~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~---~g---~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ..||+++|= |  .|..+++..+..-|.  +|.+.-...-   ..   .+.+.... ....+..   +.|++++++++|+
T Consensus         5 ~l~i~~vGD-~~nnv~~Sli~~~~~~g~--~l~~~~P~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~d~~~a~~~aDv   77 (183)
T d1duvg2           5 EMTLVYAGD-ARNNMGNSMLEAAALTGL--DLRLVAPQACWPEAALVTECRALAQQ-NGGNITL---TEDVAKGVEGADF   77 (183)
T ss_dssp             GCEEEEESC-TTSHHHHHHHHHHHHHCC--EEEEECCGGGCCCHHHHHHHHHHHHH-TTCEEEE---ESCHHHHHTTCSE
T ss_pred             CCEEEEEcC-CccHHHHHHHHHHHHcCC--EEEEEechHhhhhHHHHHHHHHHHHh-cCCceEE---EechhhccccCCE
Confidence            469999995 4  577888887777786  8998865431   11   11111111 1223332   4678899999999


Q ss_pred             EEEcC
Q 025075           92 VIIPA   96 (258)
Q Consensus        92 VIi~a   96 (258)
                      |....
T Consensus        78 vyt~~   82 (183)
T d1duvg2          78 IYTDV   82 (183)
T ss_dssp             EEECC
T ss_pred             EEEEe
Confidence            88764

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.75  E-value=0.16  Score=39.07  Aligned_cols=32  Identities=13%  Similarity=0.065  Sum_probs=28.7

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|+|||| |..|.+.|..+++.|+  ++.++|.+.
T Consensus         4 DvvVIG~-G~aG~~aA~~a~~~G~--kV~iiE~~~   35 (217)
T d1gesa1           4 DYIAIGG-GSGGIASINRAAMYGQ--KCALIEAKE   35 (217)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            4899998 9999999999999998  899999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.51  E-value=0.16  Score=41.08  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=28.9

Q ss_pred             eEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~-~~~~~ei~L~D~~~~   57 (258)
                      -|+|||| |..|...|..|++ .|+  ++.++|..+.
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~--~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNV--QVAIIEQSVS   68 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTS--CEEEEESSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCC--eEEEEecCCC
Confidence            5999998 9999999999876 488  8999998654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.44  E-value=0.66  Score=34.33  Aligned_cols=74  Identities=19%  Similarity=0.228  Sum_probs=44.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCchHhhh-----CCCCEE
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENAL-----TGMDLV   92 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aDiV   92 (258)
                      +.-+|.|.|+ |.+|...+..+...|. ..|+..|.++.+. .+.++.-..   .+.......+..+.+     .++|+|
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~-~~vi~~~~~~~k~~~ak~lGa~~---~i~~~~~~~~~~~~~~~~~~~g~D~v  102 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGA-SRIIGVDINKDKFARAKEFGATE---CINPQDFSKPIQEVLIEMTDGGVDYS  102 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTC-SEEEEECSCGGGHHHHHHHTCSE---EECGGGCSSCHHHHHHHHTTSCBSEE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhc-CceEEEcccHHHHHHHHHhCCcE---EEeCCchhhHHHHHHHHHcCCCCcEe
Confidence            3348999998 9999998888777664 4788888876532 333333111   111000011222222     579999


Q ss_pred             EEcCC
Q 025075           93 IIPAG   97 (258)
Q Consensus        93 Ii~ag   97 (258)
                      |.+.|
T Consensus       103 id~~G  107 (176)
T d2fzwa2         103 FECIG  107 (176)
T ss_dssp             EECSC
T ss_pred             eecCC
Confidence            99986

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.38  E-value=0.15  Score=38.93  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      .+|+|||| |..|...|..|++.|+  +++++|..
T Consensus         6 ~~VvIIGg-GpaGl~aA~~~ar~g~--~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGS-GPAAHTAAIYAARAEL--KPLLFEGW   37 (192)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTC--CCEEECCS
T ss_pred             ceEEEECC-CHHHHHHHHHHHHcCC--cEEEEEee
Confidence            58999998 9999999999998887  78888754

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.23  E-value=0.29  Score=34.35  Aligned_cols=36  Identities=17%  Similarity=0.067  Sum_probs=27.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~-~~ei~L~D~~~   56 (258)
                      +.+|+|||| |.+|.-+|..+...+. ..+|.+++..+
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            469999998 9999999876654322 13899998755

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.15  E-value=0.28  Score=35.44  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=26.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHh----CCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKI----NPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~----~~~~~ei~L~D~~~   56 (258)
                      .+|+|||| |++|.-+|..|..    .|.  +|.+++...
T Consensus        38 k~i~IvGg-G~~G~E~A~~l~~~~~~~g~--~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGG-GFLGSELACALGRKARALGT--EVIQLFPEK   74 (137)
T ss_dssp             SEEEEECC-SHHHHHHHHHHHHHHHHHTC--EEEEECSSS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHHHHhcCC--EEEEecccc
Confidence            48999998 9999998887753    455  899998754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=88.86  E-value=0.2  Score=37.57  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=25.9

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD   53 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D   53 (258)
                      +.||+|||+ |.+|..+|..|...+.-.+|+++.
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~~   35 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVVG   35 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEEe
Confidence            347999998 999999999998877533566554

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.60  E-value=0.21  Score=38.54  Aligned_cols=33  Identities=18%  Similarity=0.141  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      -|+|||+ |..|.+.|..+++.|.  ++.++|....
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~--kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGF--NTACVEKRGK   39 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecCC
Confidence            4899998 9999999999999988  8999997653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=88.00  E-value=0.22  Score=40.50  Aligned_cols=33  Identities=21%  Similarity=0.286  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      --|+|||+ |..|.+.|..|++.|.  +|+|+|...
T Consensus        17 ~DVlVIG~-G~aGl~aA~~la~~G~--~V~lvEK~~   49 (308)
T d1y0pa2          17 VDVVVVGS-GGAGFSAAISATDSGA--KVILIEKEP   49 (308)
T ss_dssp             CSEEEECC-SHHHHHHHHHHHHTTC--CEEEECSSS
T ss_pred             CCEEEECc-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            35999998 9999999999999997  899999765

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.84  E-value=0.22  Score=42.54  Aligned_cols=32  Identities=31%  Similarity=0.389  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHh------CCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKI------NPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~------~~~~~ei~L~D~~~   56 (258)
                      -|+|||| |..|++.|..|++      .|+  +|+|+|...
T Consensus        34 DViIVGg-GPAGlsaA~~LA~l~~~~~~Gl--~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGA-GPAGLSAATRLKQLAAQHEKDL--RVCLVEKAA   71 (380)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHHHHTTCCC--CEEEECSSS
T ss_pred             CEEEECC-CHHHHHHHHHHHhhhhhhcCCC--EEEEEcCCC
Confidence            4999998 9999999999986      788  899999865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.80  E-value=0.25  Score=36.75  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      -|+|||| |..|...|..+.+.|+  ++.++|.+
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~--~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGI--RTGLMGER   33 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTC--CEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCC--eEEEEEEe
Confidence            4899998 9999999999999998  78888753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.48  E-value=0.21  Score=38.34  Aligned_cols=32  Identities=19%  Similarity=0.121  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|.|||+ |..|.+.|..+++.|.  +++++|...
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~--kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGF--KTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTC--CEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEEecC
Confidence            4899998 9999999999999887  899999764

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=87.44  E-value=1.5  Score=34.69  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=50.0

Q ss_pred             HHHHhHHhh---cCCCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCChh-HHHHHhcCCCCCeEEEEeCCCc
Q 025075            6 CLRQAKCRA---KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQ   81 (258)
Q Consensus         6 ~~~~~~~~~---~~~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~g-~~~dl~~~~~~~~v~~~~~~~d   81 (258)
                      ++.++.-+.   ..+.+.++|+|-|- |.||+.++..|.+.|-  .|+..|.+...- ...+....      ..+  +  
T Consensus        22 ~~~~~~~~~~~g~~~l~g~~v~IqG~-GnVG~~~a~~L~~~Ga--kvv~~d~~~~~~~~~~~~~g~------~~~--~--   88 (230)
T d1leha1          22 RGMKAAAKEAFGSDSLEGLAVSVQGL-GNVAKALCKKLNTEGA--KLVVTDVNKAAVSAAVAEEGA------DAV--A--   88 (230)
T ss_dssp             HHHHHHHHHHHSSCCCTTCEEEEECC-SHHHHHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHCC------EEC--C--
T ss_pred             HHHHHHHHHhcCCCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEeecccHHHHHHHHHhcCC------ccc--C--
Confidence            444544332   33556679999997 9999999999999886  899999875321 11111111      111  1  


Q ss_pred             hHhh-hCCCCEEEEcCC
Q 025075           82 LENA-LTGMDLVIIPAG   97 (258)
Q Consensus        82 ~~~a-~~~aDiVIi~ag   97 (258)
                      .++. -.+||+++-||.
T Consensus        89 ~~~~~~~~cDIl~PcA~  105 (230)
T d1leha1          89 PNAIYGVTCDIFAPCAL  105 (230)
T ss_dssp             GGGTTTCCCSEEEECSC
T ss_pred             CcccccccccEeccccc
Confidence            1222 358999999984

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.89  E-value=0.91  Score=33.41  Aligned_cols=35  Identities=20%  Similarity=-0.024  Sum_probs=27.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      -..||+|||+ |.+|.-.|..+...|- ..++++-+.
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA-~~V~vi~rr   78 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGA-RRVFLVFRK   78 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTC-SEEEEECSS
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCC-cceeEEEeC
Confidence            3469999998 9999999987777663 467777554

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.43  E-value=0.33  Score=43.49  Aligned_cols=34  Identities=12%  Similarity=0.198  Sum_probs=30.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .||+|+|+ |.+|+.++..|+..|+ +.+.|+|-+.
T Consensus        26 s~VlvvG~-gglG~Ei~knLvl~GV-g~itivD~d~   59 (529)
T d1yova1          26 AHVCLINA-TATGTEILKNLVLPGI-GSFTIIDGNQ   59 (529)
T ss_dssp             CEEEECCC-SHHHHHHHHHHHTTTC-SEEEEECCSB
T ss_pred             CCEEEECC-CHHHHHHHHHHHHhcC-CEEEEEcCCc
Confidence            38999998 9999999999999885 7999999764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.41  E-value=0.18  Score=41.41  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhC--CCCcEEEEEeCCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKIN--PLVSVLHLYDVVNT   57 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~--~~~~ei~L~D~~~~   57 (258)
                      ..+|+|||+ |..|.+.|+.|+++  |+  +|.++|.+..
T Consensus        50 ~~~~~~~g~-g~~g~~~a~~~~~~~~~~--~~~~~~~~~~   86 (311)
T d2gjca1          50 VSDVIIVGA-GSSGLSAAYVIAKNRPDL--KVCIIESSVA   86 (311)
T ss_dssp             EESEEEECC-SHHHHHHHHHHHHHCTTS--CEEEECSSSS
T ss_pred             CCCEEEECC-CHHHHHHHHHHHHhCCCC--eEEEEEcCCC
Confidence            347999998 99999999999854  66  8999998764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.35  E-value=0.34  Score=37.61  Aligned_cols=33  Identities=24%  Similarity=0.283  Sum_probs=29.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      -|+|||+ |..|.+.|..+.+.|+  ++.++|..+.
T Consensus         8 DviIIG~-GPaGlsaA~~aa~~G~--~V~viE~~~~   40 (229)
T d1ojta1           8 DVVVLGG-GPGGYSAAFAAADEGL--KVAIVERYKT   40 (229)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccCC
Confidence            4899998 9999999999999998  8999997653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.31  E-value=0.74  Score=30.05  Aligned_cols=39  Identities=15%  Similarity=0.224  Sum_probs=30.3

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT   57 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~   57 (258)
                      ..+..+|.|.||+|.||+.....+...|.  +|......++
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQlak~~G~--~Vi~~t~s~~   67 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGRES   67 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCGG
T ss_pred             ccCCCcEEEEeCCCcHHHHHHHHHHHcCC--eEEEEECCHH
Confidence            34456899999999999999988888886  6776655443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.03  E-value=0.12  Score=38.94  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=25.4

Q ss_pred             CCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 025075           18 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV   55 (258)
Q Consensus        18 ~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~   55 (258)
                      +.++||+|||+ |.+|...+..+...+-...+.++|..
T Consensus         5 ~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~   41 (172)
T d1lc0a1           5 SGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFV   41 (172)
T ss_dssp             CCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEE
T ss_pred             CCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEecc
Confidence            34579999998 99999988777653322345555543

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=86.01  E-value=2  Score=32.21  Aligned_cols=36  Identities=17%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP   58 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~   58 (258)
                      -.|.|.||+|.||....+.+...|.  +++-....+++
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga--~Via~~~~~~k   68 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGY--QVVAVSGREST   68 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCGGG
T ss_pred             CcEEEEEccccchHHHHHHHHHcCC--CeEEEecchhH
Confidence            3799999999999999998888887  66766665543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.82  E-value=0.34  Score=37.59  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=28.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|.|||| |..|.+.|..+++.|+  ++.++|..+
T Consensus         5 DviVIG~-GpaGl~aA~~aa~~G~--kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGG-GSGGLAAAKEAAKFDK--KVMVLDFVT   36 (235)
T ss_dssp             EEEEECC-SHHHHHHHHHHGGGCC--CEEEECCCC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--eEEEEeccC
Confidence            3899998 9999999999999998  899999643

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.79  E-value=0.37  Score=37.36  Aligned_cols=35  Identities=9%  Similarity=0.053  Sum_probs=29.7

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .++.|||| |+.|..+|..|.+.+.-.+|.+++...
T Consensus         5 ~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e~   39 (213)
T d1m6ia1           5 VPFLLIGG-GTAAFAAARSIRARDPGARVLIVSEDP   39 (213)
T ss_dssp             EEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCCC
Confidence            36899998 999999999998877767899998643

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.62  E-value=0.82  Score=37.43  Aligned_cols=108  Identities=11%  Similarity=0.079  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---h-HHHHHhcC-CCCCeEEEEeCCCchHhhhC----CC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G-VTADISHM-DTGAVVRGFLGQPQLENALT----GM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g-~~~dl~~~-~~~~~v~~~~~~~d~~~a~~----~a   89 (258)
                      .+.+|.|||+ |. |.. +..+....-..+|.++|+|++-   + .-++..+. ...++++.+.  .|-.+-++    .-
T Consensus        78 ~pk~vLiiGg-G~-G~~-~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~--~Da~~~l~~~~~~y  152 (285)
T d2o07a1          78 NPRKVLIIGG-GD-GGV-LREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV--GDGFEFMKQNQDAF  152 (285)
T ss_dssp             SCCEEEEEEC-TT-SHH-HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHHHHTCSSCE
T ss_pred             CcCeEEEeCC-Cc-hHH-HHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE--ccHHHHHhcCCCCC
Confidence            3468999997 64 333 3444444334699999999751   1 11111111 1134666554  23233333    45


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe-cCC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNP  139 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~-tNP  139 (258)
                      |+||+-.-.|..+.. .    ..+.+.++.+.+.+   .|+|+++.- .+|
T Consensus       153 DvIi~D~~~p~~~~~-~----L~t~eF~~~~~~~L---~~~Gi~v~q~~s~  195 (285)
T d2o07a1         153 DVIITDSSDPMGPAE-S----LFKESYYQLMKTAL---KEDGVLCCQGECQ  195 (285)
T ss_dssp             EEEEEECC----------------CHHHHHHHHHE---EEEEEEEEEEECT
T ss_pred             CEEEEcCCCCCCccc-c----cccHHHHHHHHHhc---CCCCeEEEeccch
Confidence            999986533321111 0    11233334443333   588887553 344

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.91  E-value=0.39  Score=39.29  Aligned_cols=33  Identities=24%  Similarity=0.304  Sum_probs=29.6

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .-|.|||+ |..|.+.|..|++.|+  +|+|++...
T Consensus        24 ~DVvVIG~-G~aGl~aA~~la~~G~--~V~llEk~~   56 (322)
T d1d4ca2          24 TDVVIIGS-GGAGLAAAVSARDAGA--KVILLEKEP   56 (322)
T ss_dssp             CSEEEECS-SHHHHHHHHHHHTTTC--CEEEECSSS
T ss_pred             ceEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            45999998 9999999999999998  899999765

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=84.90  E-value=0.33  Score=37.37  Aligned_cols=32  Identities=19%  Similarity=0.102  Sum_probs=29.0

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .|.|||| |..|...|..+++.|.  ++.|+|.+.
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~--~V~liE~~~   38 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGI--PTVLVEGQA   38 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--cEEEEecCC
Confidence            6999998 9999999999999998  899999754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=0.49  Score=36.17  Aligned_cols=31  Identities=13%  Similarity=0.029  Sum_probs=28.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |.|||+ |..|.+.|..+++.|.  ++.++|.+.
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~--kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGA--RAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--EEEEEeccC
Confidence            789998 9999999999999887  899999765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.57  E-value=0.28  Score=33.95  Aligned_cols=35  Identities=11%  Similarity=0.115  Sum_probs=25.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.+||+|||+ |.-|.-++..|+..  +.++++..+..
T Consensus        31 ~gK~VlVVG~-g~Sa~dia~~l~~~--ak~v~~~~~r~   65 (107)
T d2gv8a2          31 VGESVLVVGG-ASSANDLVRHLTPV--AKHPIYQSLLG   65 (107)
T ss_dssp             TTCCEEEECS-SHHHHHHHHHHTTT--SCSSEEEECTT
T ss_pred             CCCeEEEECC-CCCHHHHHHHHHHh--cCEEEEEEecC
Confidence            3468999998 99999999888653  33555554443

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=84.31  E-value=0.59  Score=34.68  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=26.1

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVN   56 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~-~~~ei~L~D~~~   56 (258)
                      |+||+|.|++|++|.+....+.+.+ .+ +|+.+--+.
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecC
Confidence            4589999999999999887776653 23 555555443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.27  E-value=2.6  Score=34.30  Aligned_cols=109  Identities=15%  Similarity=0.159  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---hH-HHHH-hcCCCCCeEEEEeCCCchHhhh----C-C
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GV-TADI-SHMDTGAVVRGFLGQPQLENAL----T-G   88 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g~-~~dl-~~~~~~~~v~~~~~~~d~~~a~----~-~   88 (258)
                      ++.||.|||+ |. |.. +..+....-..+|.++|+|++-   +. -... .......+++.+.+  |-.+-+    + .
T Consensus        80 ~pk~VLiiGg-G~-G~~-~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~--Da~~~l~~~~~~~  154 (290)
T d1xj5a_          80 NPKKVLVIGG-GD-GGV-LREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIG--DGVAFLKNAAEGS  154 (290)
T ss_dssp             CCCEEEEETC-SS-SHH-HHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEES--CHHHHHHTSCTTC
T ss_pred             CCcceEEecC-Cc-hHH-HHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEc--cHHHHHhhccccC
Confidence            4569999997 64 333 3344444445689999999851   11 1111 11112345655432  211222    2 4


Q ss_pred             CCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCC
Q 025075           89 MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPV  140 (258)
Q Consensus        89 aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv  140 (258)
                      -|+||+-+-.|.  +.. ..+  .+.+.++.+.+.+   .|+|+++. ..+|-
T Consensus       155 yDvIi~D~~dp~--~~~-~~L--~t~eF~~~~~~~L---~~~Gi~v~q~~s~~  199 (290)
T d1xj5a_         155 YDAVIVDSSDPI--GPA-KEL--FEKPFFQSVARAL---RPGGVVCTQAESLW  199 (290)
T ss_dssp             EEEEEECCCCTT--SGG-GGG--GSHHHHHHHHHHE---EEEEEEEEECCCTT
T ss_pred             ccEEEEcCCCCC--Ccc-hhh--CCHHHHHHHHHhc---CCCcEEEEecCCcH
Confidence            788888654332  211 111  2344444444444   48888655 44553

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.02  E-value=2.7  Score=31.44  Aligned_cols=92  Identities=13%  Similarity=0.130  Sum_probs=53.4

Q ss_pred             CeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHhcCCCCCeEEEEeCCCchHhhh-----CCCCEEEE
Q 025075           21 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENAL-----TGMDLVII   94 (258)
Q Consensus        21 ~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~~~~~~~~v~~~~~~~d~~~a~-----~~aDiVIi   94 (258)
                      .+|.|.||+|.||+...+.+...|.  +++-...++++ ....++..   ...+. .  +.+.++..     ++.|+|+-
T Consensus        33 ~~VLI~gaaGGVG~~aiQlak~~Ga--~Viat~~s~~k~~~~~~lGa---~~vi~-~--~~~~~~~~~~~~~~gvD~vid  104 (176)
T d1xa0a2          33 GPVLVTGATGGVGSLAVSMLAKRGY--TVEASTGKAAEHDYLRVLGA---KEVLA-R--EDVMAERIRPLDKQRWAAAVD  104 (176)
T ss_dssp             CCEEESSTTSHHHHHHHHHHHHTTC--CEEEEESCTTCHHHHHHTTC---SEEEE-C--C---------CCSCCEEEEEE
T ss_pred             CEEEEEeccchHHHHHHHHHHHcCC--ceEEecCchHHHHHHHhccc---ceeee-c--chhHHHHHHHhhccCcCEEEE
Confidence            4699999999999999988888886  66666665542 22222211   11111 1  11111211     47899888


Q ss_pred             cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCC
Q 025075           95 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP  139 (258)
Q Consensus        95 ~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNP  139 (258)
                      +.|-     ..              +-..+....|++.++.+++.
T Consensus       105 ~vgg-----~~--------------~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         105 PVGG-----RT--------------LATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             CSTT-----TT--------------HHHHHHTEEEEEEEEECSCC
T ss_pred             cCCc-----hh--------------HHHHHHHhCCCceEEEeecc
Confidence            8751     11              23334445688999888653

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=83.94  E-value=0.34  Score=36.07  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             CCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCEEEEc
Q 025075           20 GFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP   95 (258)
Q Consensus        20 ~~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDiVIi~   95 (258)
                      ..||+++|=..  .|..+++..+...+. ..+++.-....  .....+..+.. ...+..   +.|++++++++|+|..+
T Consensus         4 gl~i~~vGD~~nsrv~~Sli~~l~~~~~-~~~~~~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDvvy~~   78 (160)
T d1ekxa2           4 NLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDILYMT   78 (160)
T ss_dssp             SCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHHT-TCCEEE---CSCSTTTGGGCSEEEEC
T ss_pred             CCEEEEEcCCCccHHHHHHHHHHHHcCC-CeEEeeccchhhhhHHHHHHHhhh-cccccc---ccCHHHHhCcCceEEee
Confidence            35999999622  388888877766543 25666654321  12222222221 123332   46788999999998865


Q ss_pred             C
Q 025075           96 A   96 (258)
Q Consensus        96 a   96 (258)
                      -
T Consensus        79 ~   79 (160)
T d1ekxa2          79 R   79 (160)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.82  E-value=0.55  Score=35.72  Aligned_cols=32  Identities=19%  Similarity=0.135  Sum_probs=28.6

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|.|||+ |..|.+.|..+++.|+  +++++|...
T Consensus         5 DviVIG~-GpaGl~aA~~aar~G~--kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGA-GPGGYVAAIRAAQLGQ--KVTIVEKGN   36 (223)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTC--CEEEEESSC
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCC--EEEEEecCC
Confidence            4899998 9999999999999997  899998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=83.77  E-value=0.39  Score=36.61  Aligned_cols=32  Identities=25%  Similarity=0.201  Sum_probs=28.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      -|.|||+ |.-|.+.|..+++.|+  .+.++|...
T Consensus         5 DviIIGg-GpAGl~aA~~aar~G~--~V~viE~~~   36 (229)
T d3lada1           5 DVIVIGA-GPGGYVAAIKSAQLGL--KTALIEKYK   36 (229)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTC--CEEEEECCB
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCC--eEEEEeccc
Confidence            4899998 9999999999999988  899999753

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=83.75  E-value=1.3  Score=32.11  Aligned_cols=32  Identities=19%  Similarity=0.130  Sum_probs=27.4

Q ss_pred             eEEEE--cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           22 KVAIL--GAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        22 KI~II--Ga~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      .+.|+  |+ |++|..+|..|+..|.  +|.+++..+
T Consensus        41 ~vvi~d~gg-g~ig~e~A~~la~~G~--~Vtlv~~~~   74 (156)
T d1djqa2          41 RVVILNADT-YFMAPSLAEKLATAGH--EVTIVSGVH   74 (156)
T ss_dssp             EEEEEECCC-SSHHHHHHHHHHHTTC--EEEEEESSC
T ss_pred             ceEEEecCC-ChHHHHHHHHHHHcCC--eEEEEecCC
Confidence            45554  87 9999999999999997  999998865

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=83.56  E-value=1.6  Score=36.18  Aligned_cols=106  Identities=14%  Similarity=0.143  Sum_probs=50.0

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHH---hcC-CCCCeEEEEeCCCchHhhh----CCCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADI---SHM-DTGAVVRGFLGQPQLENAL----TGMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl---~~~-~~~~~v~~~~~~~d~~~a~----~~aD   90 (258)
                      +.||.|||+ |. |... ..+....-+.+|.++|+|+.- ..+...   .+. ...++++.+.  .|-.+.+    +.-|
T Consensus       107 pk~VLIiGg-G~-G~~~-rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i--~Da~~~l~~~~~~yD  181 (312)
T d2b2ca1         107 PKRVLIIGG-GD-GGIL-REVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC--GDGFEFLKNHKNEFD  181 (312)
T ss_dssp             CCEEEEESC-TT-SHHH-HHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC--SCHHHHHHHCTTCEE
T ss_pred             CCeEEEeCC-Cc-hHHH-HHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE--chHHHHHHhCCCCCC
Confidence            468999997 64 3333 344444444699999998751 111111   111 1134566543  2322333    3479


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhh-CCCcEEEEec-CC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS-NP  139 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~-~p~a~viv~t-NP  139 (258)
                      +||+-.-.|..+. .  .  ..+    ++..+.+++. .|+|+++.-+ +|
T Consensus       182 vII~D~~dp~~~~-~--~--L~t----~eFy~~~~~~L~~~Gi~v~q~~s~  223 (312)
T d2b2ca1         182 VIITDSSDPVGPA-E--S--LFG----QSYYELLRDALKEDGILSSQGESV  223 (312)
T ss_dssp             EEEECCC----------------------HHHHHHHHEEEEEEEEEECCCT
T ss_pred             EEEEcCCCCCCcc-h--h--hhh----HHHHHHHHhhcCCCcEEEEecCCh
Confidence            9998653332111 1  1  122    3344444443 5899876543 44

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.46  E-value=0.54  Score=37.27  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.|||+ |..|...|..+++.|.  .+.|+|.+.
T Consensus         4 viVIG~-G~aG~~aA~~aa~~G~--~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGG-GSGGMAAARRAARHNA--KVALVEKSR   34 (259)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTC--CEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHHCCC--eEEEEecCC
Confidence            789998 9999999999999998  899999754

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.41  E-value=1.5  Score=35.56  Aligned_cols=110  Identities=12%  Similarity=0.170  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHHHHHh---c-------CCCCCeEEEEeCCC-chHhhh
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADIS---H-------MDTGAVVRGFLGQP-QLENAL   86 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~~dl~---~-------~~~~~~v~~~~~~~-d~~~a~   86 (258)
                      ++.+|.|||+ |. |..+ ..+...+. .+|.++|+|+.- ..+.+..   .       ....++++.+.+.. .+-+.-
T Consensus        72 ~p~~vLiiG~-G~-G~~~-~~~l~~~~-~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~  147 (276)
T d1mjfa_          72 KPKRVLVIGG-GD-GGTV-REVLQHDV-DEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNN  147 (276)
T ss_dssp             CCCEEEEEEC-TT-SHHH-HHHTTSCC-SEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHC
T ss_pred             CCceEEEecC-Cc-hHHH-HHHHHhCC-ceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhcc
Confidence            4469999997 63 3333 33444443 589999998741 1111111   1       11134566554211 111123


Q ss_pred             CCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCC
Q 025075           87 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPV  140 (258)
Q Consensus        87 ~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv  140 (258)
                      +.-|+||+-.-.|..+. ..    ..+.+.++.+.+.+   .|+|++++ ..||-
T Consensus       148 ~~yDvIi~D~~~~~~~~-~~----L~t~eF~~~~~~~L---~~~Gv~v~q~~s~~  194 (276)
T d1mjfa_         148 RGFDVIIADSTDPVGPA-KV----LFSEEFYRYVYDAL---NNPGIYVTQAGSVY  194 (276)
T ss_dssp             CCEEEEEEECCCCC----------TTSHHHHHHHHHHE---EEEEEEEEEEEETT
T ss_pred             CCCCEEEEeCCCCCCCc-cc----ccCHHHHHhhHhhc---CCCceEEEecCCcc
Confidence            67899998653332111 11    11234444444433   48887654 44554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=83.12  E-value=0.5  Score=39.18  Aligned_cols=30  Identities=10%  Similarity=0.130  Sum_probs=27.3

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      -|.|||+ |.-|..+|..|++.|+  .|++++.
T Consensus         4 ~VIVVGs-G~aG~v~A~rLaeaG~--~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGT-GYGAAVSALRLGEAGV--QTLMLEM   33 (367)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--CEEEEES
T ss_pred             eEEEeCc-CHHHHHHHHHHHHCcC--eEEEEec
Confidence            4899997 9999999999999997  8999986

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=82.91  E-value=1.9  Score=34.82  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=55.0

Q ss_pred             CCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh-hHH---HHH-hcCCCCCeEEEEeCCCchHhhh----CCC
Q 025075           19 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT---ADI-SHMDTGAVVRGFLGQPQLENAL----TGM   89 (258)
Q Consensus        19 ~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~-g~~---~dl-~~~~~~~~v~~~~~~~d~~~a~----~~a   89 (258)
                      .+.+|.|||+ |. |......+...+ ..+|.++|+|++- ..+   ... ....-.++++.+..  |-.+-+    +.-
T Consensus        75 ~p~~vLiiGg-G~-G~~~~~~l~~~~-~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~--D~~~~l~~~~~~y  149 (274)
T d1iy9a_          75 NPEHVLVVGG-GD-GGVIREILKHPS-VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD--DGFMHIAKSENQY  149 (274)
T ss_dssp             SCCEEEEESC-TT-CHHHHHHTTCTT-CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES--CSHHHHHTCCSCE
T ss_pred             CcceEEecCC-CC-cHHHHHHHhcCC-cceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec--hHHHHHhhcCCCC
Confidence            3468999997 64 444333443333 4699999999851 111   111 11112345665442  222223    347


Q ss_pred             CEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCCC
Q 025075           90 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNPV  140 (258)
Q Consensus        90 DiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNPv  140 (258)
                      |+||+-.-.|..+...   +  .+.+.++.+.+.+   .|+|+++. ..+|-
T Consensus       150 DvIi~D~~~p~~~~~~---L--~t~eFy~~~~~~L---~~~Gv~v~q~~s~~  193 (274)
T d1iy9a_         150 DVIMVDSTEPVGPAVN---L--FTKGFYAGIAKAL---KEDGIFVAQTDNPW  193 (274)
T ss_dssp             EEEEESCSSCCSCCCC---C--STTHHHHHHHHHE---EEEEEEEEECCCTT
T ss_pred             CEEEEcCCCCCCcchh---h--ccHHHHHHHHhhc---CCCceEEEecCCcc
Confidence            8998875444322221   1  1233344444444   48888654 34653

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=82.71  E-value=7.8  Score=29.60  Aligned_cols=99  Identities=16%  Similarity=0.192  Sum_probs=50.3

Q ss_pred             EEEEcCCCchHHHH-----HHHHHhCCCCcEEEEEeCCCChhHHHH----HhcCCCCCeEEEEeCCCchHh---------
Q 025075           23 VAILGAAGGIGQPL-----AMLMKINPLVSVLHLYDVVNTPGVTAD----ISHMDTGAVVRGFLGQPQLEN---------   84 (258)
Q Consensus        23 I~IIGa~G~VG~~~-----a~~L~~~~~~~ei~L~D~~~~~g~~~d----l~~~~~~~~v~~~~~~~d~~~---------   84 (258)
                      |.++|- ..+|.+.     |..+..++.  .+.++..|.-+.-+.|    +.+. ....+.......++.+         
T Consensus        13 i~lvGp-~GvGKTTTiaKLA~~~~~~g~--kV~lit~Dt~R~gA~eQL~~~a~~-l~v~~~~~~~~~~~~~~~~~~~~~~   88 (207)
T d1ls1a2          13 WFLVGL-QGSGKTTTAAKLALYYKGKGR--RPLLVAADTQRPAAREQLRLLGEK-VGVPVLEVMDGESPESIRRRVEEKA   88 (207)
T ss_dssp             EEEECC-TTTTHHHHHHHHHHHHHHTTC--CEEEEECCSSCHHHHHHHHHHHHH-HTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred             EEEECC-CCCCHHHHHHHHHHHHHHCCC--cEEEEecccccchHHHHHHHHHHh-cCCccccccccchhhHHHHHHHHHH
Confidence            677898 6678754     334555664  7888888764211111    1111 1112222222234432         


Q ss_pred             hhCCCCEEEE-cCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEe
Q 025075           85 ALTGMDLVII-PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI  136 (258)
Q Consensus        85 a~~~aDiVIi-~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~  136 (258)
                      ..+++|+|++ |+|....           |.+.+.++.+-.+...|+-++++.
T Consensus        89 ~~~~~d~vlIDTaGr~~~-----------d~~~~~el~~~~~~~~~~~~llv~  130 (207)
T d1ls1a2          89 RLEARDLILVDTAGRLQI-----------DEPLMGELARLKEVLGPDEVLLVL  130 (207)
T ss_dssp             HHHTCCEEEEECCCCSSC-----------CHHHHHHHHHHHHHHCCSEEEEEE
T ss_pred             hhccCcceeecccccchh-----------hhhhHHHHHHHHhhcCCceEEEEe
Confidence            2579999999 6764422           122234444444444676554444

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.49  E-value=1.3  Score=36.41  Aligned_cols=108  Identities=13%  Similarity=0.113  Sum_probs=51.5

Q ss_pred             CCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCCh---h-HHHHHhcCC-CCCeEEEEeCCCchHhhhC----CCC
Q 025075           20 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---G-VTADISHMD-TGAVVRGFLGQPQLENALT----GMD   90 (258)
Q Consensus        20 ~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~~~---g-~~~dl~~~~-~~~~v~~~~~~~d~~~a~~----~aD   90 (258)
                      +.+|.|||+ |. |.. +..+.......+|.++|+|+.-   + +-+...+.. ..++++.+.  .|-.+-++    .-|
T Consensus        90 pk~VLiiGg-G~-G~~-~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~--~Da~~~l~~~~~~yD  164 (295)
T d1inla_          90 PKKVLIIGG-GD-GGT-LREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI--ANGAEYVRKFKNEFD  164 (295)
T ss_dssp             CCEEEEEEC-TT-CHH-HHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE--SCHHHHGGGCSSCEE
T ss_pred             CceEEEecC-Cc-hHH-HHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh--hhHHHHHhcCCCCCC
Confidence            469999997 64 333 3344444334689999999751   1 111111111 134565543  23233333    478


Q ss_pred             EEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEE-ecCC
Q 025075           91 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL-ISNP  139 (258)
Q Consensus        91 iVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv-~tNP  139 (258)
                      +||+-.-.|......+    ....+.++.+.+.+   .|+|+++. ..+|
T Consensus       165 vIi~D~~dp~~~~~~~----L~t~efy~~~~~~L---~~~Gi~v~q~~sp  207 (295)
T d1inla_         165 VIIIDSTDPTAGQGGH----LFTEEFYQACYDAL---KEDGVFSAETEDP  207 (295)
T ss_dssp             EEEEEC--------------CCSHHHHHHHHHHE---EEEEEEEEECCCT
T ss_pred             EEEEcCCCCCcCchhh----hccHHHHHHHHhhc---CCCcEEEEecCCh
Confidence            9988643321110011    11233444444333   58888655 4466

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=82.32  E-value=0.9  Score=36.48  Aligned_cols=36  Identities=22%  Similarity=0.190  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           19 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        19 ~~~KI~IIGa~G--~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      +.+++.|+||+|  .+|..++..|++.|.  +|++.+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga--~Vvi~~~~~   44 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA--EILVGTWVP   44 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC--EEEEEEEHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence            345788999865  699999999999997  899998754

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=82.13  E-value=0.64  Score=38.11  Aligned_cols=30  Identities=27%  Similarity=0.428  Sum_probs=27.4

Q ss_pred             eEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 025075           22 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV   54 (258)
Q Consensus        22 KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~   54 (258)
                      -|+|||+ |.-|..+|..|++.|+  .|.+++.
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~--kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGY--KVAMFDI   35 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTC--EEEEECS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCC--eEEEEec
Confidence            4899997 9999999999999997  8999985

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.55  E-value=4.7  Score=29.45  Aligned_cols=49  Identities=16%  Similarity=0.323  Sum_probs=29.4

Q ss_pred             hhhCCCCEEEEcCCCCCCCCCchhhHHHHhHHHHHHHHHHhhhhCCCcEEEEecCCCC
Q 025075           84 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN  141 (258)
Q Consensus        84 ~a~~~aDiVIi~ag~~~~~g~~r~d~~~~n~~i~~~i~~~i~~~~p~a~viv~tNPvd  141 (258)
                      ..++++|.+++....      +..+-+. ++.  ..+...+++++++..++++.|=.|
T Consensus        72 ~~~~~~~~~ilv~d~------~~~~sf~-~i~--~~~~~~~~~~~~~~piilvgnK~D  120 (183)
T d1mh1a_          72 LSYPQTDVSLICFSL------VSPASFE-NVR--AKWYPEVRHHCPNTPIILVGTKLD  120 (183)
T ss_dssp             GGCTTCSEEEEEEET------TCHHHHH-HHH--HTHHHHHHHHSTTSCEEEEEECHH
T ss_pred             hcccccceeeeeecc------chHHHHH-HHH--HHHHHHHHHhCCCCcEEEEeeccc
Confidence            456899998887532      1111111 221  224455566778877888999888

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=81.42  E-value=0.68  Score=37.73  Aligned_cols=31  Identities=16%  Similarity=0.237  Sum_probs=28.1

Q ss_pred             EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           23 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        23 I~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |.|||+ |..|.+.|..+++.|.  .|.|++...
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~--~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGL--STIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTC--CEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCC--CEEEEecCC
Confidence            899998 9999999999999997  799998754

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.00  E-value=0.5  Score=38.64  Aligned_cols=37  Identities=22%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             CCCCCeEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 025075           17 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN   56 (258)
Q Consensus        17 ~~~~~KI~IIGa~G~VG~~~a~~L~~~~~~~ei~L~D~~~   56 (258)
                      |.+..-|.|||+ |..|.+.|..+++.|.  +|+|++...
T Consensus        16 ~~e~~DVvVIGa-G~aGl~AA~~aa~~G~--~V~vlEK~~   52 (317)
T d1qo8a2          16 PSETTQVLVVGA-GSAGFNASLAAKKAGA--NVILVDKAP   52 (317)
T ss_dssp             CSEEEEEEEECC-SHHHHHHHHHHHHHTC--CEEEECSSS
T ss_pred             CCCccCEEEECc-CHHHHHHHHHHHHCCC--cEEEEeCCC
Confidence            344456999998 9999999999999997  899998754

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=80.05  E-value=1.5  Score=36.08  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=44.7

Q ss_pred             CCCCCCeEEEEcC--CCchHHHHHHHHHhCCCCcEEEEEeCCCC--hhHHHHHhcCCCCCeEEEEeCCCchHhhhCCCCE
Q 025075           16 GGAAGFKVAILGA--AGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDL   91 (258)
Q Consensus        16 ~~~~~~KI~IIGa--~G~VG~~~a~~L~~~~~~~ei~L~D~~~~--~g~~~dl~~~~~~~~v~~~~~~~d~~~a~~~aDi   91 (258)
                      ++-+..||+++|-  .+.+..+++..+...+. .++.+.-...-  .....+..+.. ...+..   .+|++++++++|+
T Consensus       150 g~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~-~~~~i~~P~~~~~~~~~~~~~~~~-~~~~~~---~~d~~~a~~~aDv  224 (310)
T d1tuga1         150 GRLDNLHVAMVGDLKYGRTVHSLTQALAKFDG-NRFYFIAPDALAMPQYILDMLDEK-GIAWSL---HSSIEEVMAEVDI  224 (310)
T ss_dssp             SCSSSCEEEEESCTTTCHHHHHHHHHHTTSSS-CEEEEECCGGGCCCHHHHHHHHTT-TCCEEE---ESCGGGTTTTCSE
T ss_pred             CCcccceEEEEeccccCcchHHHHHHHHhccC-ceEEEeCCcccccchhcccccccc-cceeee---eechhhhccCCce
Confidence            4555679999996  24566666666655432 27888765431  22233333222 123332   3577899999999


Q ss_pred             EEEcC
Q 025075           92 VIIPA   96 (258)
Q Consensus        92 VIi~a   96 (258)
                      |..+-
T Consensus       225 vy~~~  229 (310)
T d1tuga1         225 LYMTR  229 (310)
T ss_dssp             EEECC
T ss_pred             eeecc
Confidence            88653