Citrus Sinensis ID: 025080

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------26
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
ccEEEEEHHEEcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccc
HHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccc
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKegrssylpygkEKMQELVQMYFVQAKwfsegyvptwdeyypvglvsCGYFMLATNSFLGMCDVANKEAFEwiskdpkistaSSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNeeflkptafpvalierpFNIARVIEFLNkkgdwythsHAIKDQIAAvlrdpvti
mtktiytasiiddtfdAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFewiskdpkistaSSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKdqiaavlrdpvti
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAeevvtvfteeveNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
***TIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVL******
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
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MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTHSHAIKDQIAAVLRDPVTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query258 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 1.0 0.463 0.528 1e-75
E3W207559 Sesquiterpene synthase OS N/A no 0.996 0.459 0.503 1e-71
B5A435559 Sesquiterpene synthase OS N/A no 1.0 0.461 0.486 4e-71
F6M8H6562 Probable sesquiterpene sy N/A no 1.0 0.459 0.482 2e-70
Q94JS8560 (E)-beta-farnesene syntha N/A no 0.996 0.458 0.517 1e-69
F6M8H7562 Probable sesquiterpene sy N/A no 1.0 0.459 0.486 2e-69
E3W208562 Sesquiterpene synthase OS N/A no 1.0 0.459 0.478 5e-69
Q6Q3H2556 Valencene synthase OS=Vit no no 0.992 0.460 0.505 2e-68
O23945556 (-)-alpha-pinene synthase N/A no 1.0 0.464 0.455 5e-68
F6M8H5562 Probable sesquiterpene sy N/A no 1.0 0.459 0.478 8e-68
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  282 bits (722), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/259 (52%), Positives = 181/259 (69%), Gaps = 1/259 (0%)

Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
           +TK I   SIIDD +D YG  EEL+L  EAV+RWDI A+D LPEYM+V Y+ALL  ++EI
Sbjct: 299 LTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEI 358

Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
           E+++AKEGRS  L Y KE M+  V+ Y+ +AKW     +PT +EY PV LV+  Y MLAT
Sbjct: 359 EEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLAT 418

Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
            SF+GM D   KE+F+WI   PKI  AS+++CRL +D+V  +FEQKRGH+AS VECY+KQ
Sbjct: 419 TSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQ 478

Query: 181 YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240
           +G S +E    F + V  AWKD+NEE L PTA P+ ++ R  N+ARVI+ + K  D YTH
Sbjct: 479 HGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTH 538

Query: 241 SHAI-KDQIAAVLRDPVTI 258
             A+ KD + ++L DPV I
Sbjct: 539 FGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q94JS8|FARS_CITJU (E)-beta-farnesene synthase OS=Citrus junos PE=1 SV=1 Back     alignment and function description
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
9864189 555 terpene synthase [Citrus junos] 1.0 0.464 0.941 1e-142
261343328 548 terpene synthase 1 [Citrus sinensis] 0.992 0.467 0.599 9e-87
33316389 548 valencene synthase [Citrus sinensis] 0.992 0.467 0.599 1e-86
19880625 548 putative terpene synthase [Citrus x para 0.992 0.467 0.595 4e-86
147828675 557 hypothetical protein VITISV_013313 [Viti 1.0 0.463 0.532 1e-75
359493937 557 PREDICTED: (-)-germacrene D synthase [Vi 1.0 0.463 0.532 1e-75
255563621 558 (+)-delta-cadinene synthase isozyme A, p 1.0 0.462 0.519 4e-75
147770872 545 hypothetical protein VITISV_010524 [Viti 0.992 0.469 0.533 4e-75
147856860 557 hypothetical protein VITISV_030783 [Viti 1.0 0.463 0.528 5e-75
297740955252 unnamed protein product [Vitis vinifera] 0.965 0.988 0.54 1e-74
>gi|9864189|gb|AAG01339.1| terpene synthase [Citrus junos] Back     alignment and taxonomy information
 Score =  511 bits (1316), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 243/258 (94%), Positives = 246/258 (95%)

Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
           MTKTIYTASIIDDTFDAYGFFEELKL AEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI
Sbjct: 298 MTKTIYTASIIDDTFDAYGFFEELKLFAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 357

Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
           EQDLAKEGRSS LPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT
Sbjct: 358 EQDLAKEGRSSCLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 417

Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
           NSFLGMCDVANKE+FEWIS+  +       ICRLRNDIVS QFEQKRGHIASGVECYIKQ
Sbjct: 418 NSFLGMCDVANKESFEWISRTLRFQQRHQFICRLRNDIVSHQFEQKRGHIASGVECYIKQ 477

Query: 181 YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240
           YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH
Sbjct: 478 YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 537

Query: 241 SHAIKDQIAAVLRDPVTI 258
           SHAIKDQIAAVLRDPVTI
Sbjct: 538 SHAIKDQIAAVLRDPVTI 555

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|261343328|gb|ACX70155.1| terpene synthase 1 [Citrus sinensis] Back     alignment and taxonomy information
>gi|33316389|gb|AAQ04608.1|AF441124_1 valencene synthase [Citrus sinensis] Back     alignment and taxonomy information
>gi|19880625|gb|AAM00426.1|AF411120_1 putative terpene synthase [Citrus x paradisi] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255563621|ref|XP_002522812.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|223537896|gb|EEF39510.1| (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis] gi|350284786|gb|AEQ27766.1| alpha-copaene synthase [Ricinus communis] Back     alignment and taxonomy information
>gi|147770872|emb|CAN72015.1| hypothetical protein VITISV_010524 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297740955|emb|CBI31267.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query258
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.984 0.454 0.480 1.8e-64
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.988 0.452 0.453 1.5e-60
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.968 0.442 0.450 2.5e-58
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 1.0 0.469 0.416 1.3e-52
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.961 0.447 0.428 5.1e-51
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.992 0.448 0.418 8.3e-51
UNIPROTKB|B2KSJ6560 B2KSJ6 "Alpha-farnesene syntha 1.0 0.460 0.409 8.3e-51
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.992 0.469 0.406 5.8e-50
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.980 0.455 0.413 3.2e-49
UNIPROTKB|Q8LSC3583 Q8LSC3 "Germacrene A synthase 0.984 0.435 0.380 1.8e-48
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 657 (236.3 bits), Expect = 1.8e-64, P = 1.8e-64
 Identities = 123/256 (48%), Positives = 175/256 (68%)

Query:     5 IYTA-SIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQD 63
             ++T  S IDD +DAYG  +EL+L  +A+QRWD+G++D LPEYMK  YK++LD +NEIE++
Sbjct:   304 VFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEE 363

Query:    64 LAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSF 123
             +  +G    + Y KE M++LV+ Y  +AKW  E YVPT++EY PV LV+ GY  L T S+
Sbjct:   364 MDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISY 423

Query:   124 LGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQYGV 183
             LGM ++A+KEAF+W+   P +  AS  +CRL +D+ S +FEQ+RGH+ASG+ECY+KQYGV
Sbjct:   424 LGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGV 483

Query:   184 SAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH-SH 242
             +              AWKD+NEE L+P   P  L+ R  N+ RVI+ + K  D YTH   
Sbjct:   484 TEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKK 543

Query:   243 AIKDQIAAVLRDPVTI 258
             A+KD IA++L DP+ +
Sbjct:   544 AMKDNIASLLIDPMIV 559
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|B2KSJ6 B2KSJ6 "Alpha-farnesene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q8LSC3 Q8LSC3 "Germacrene A synthase long form" [Cichorium intybus (taxid:13427)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00027702001
SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (318 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 1e-118
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 4e-91
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 5e-80
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 6e-33
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 5e-15
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 2e-14
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  348 bits (896), Expect = e-118
 Identities = 134/257 (52%), Positives = 179/257 (69%), Gaps = 2/257 (0%)

Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
           + KTI   ++IDDT+D YG  EEL+L  EAV+RWDI A+D LPEYMK+++KALL+T NEI
Sbjct: 286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEI 345

Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
           E++L KEG S  +PY KE  ++LV+ Y V+AKW  EGYVPT++EY    LVS G   L  
Sbjct: 346 EEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLL 405

Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
            SFLGM D+  +EAFEW+   PK+  ASS I RL NDI + + E KRG +AS +ECY+K+
Sbjct: 406 TSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKE 465

Query: 181 YGVSAEEVVTVFTEEVENAWKDMNEEFLKP-TAFPVALIERPFNIARVIEFLNKKGDWYT 239
           YGVS EE      + +E+AWK++NEEFLKP +  P  + +R  N+ARVI+   K+GD +T
Sbjct: 466 YGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT 525

Query: 240 HSHA-IKDQIAAVLRDP 255
           H    IKD I ++L +P
Sbjct: 526 HPEGEIKDHITSLLFEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 258
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 100.0
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.86
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 98.36
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 98.26
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 94.21
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 91.98
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 90.44
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 89.23
PLN02890422 geranyl diphosphate synthase 88.95
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 88.69
PLN02857416 octaprenyl-diphosphate synthase 88.47
TIGR02748319 GerC3_HepT heptaprenyl diphosphate synthase compon 87.19
KOG1719183 consensus Dual specificity phosphatase [Defense me 83.61
COG0142322 IspA Geranylgeranyl pyrophosphate synthase [Coenzy 82.68
cd00683265 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase 81.92
PRK10888323 octaprenyl diphosphate synthase; Provisional 81.2
PF0386156 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (Am 80.36
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=2e-68  Score=510.52  Aligned_cols=255  Identities=53%  Similarity=0.882  Sum_probs=250.1

Q ss_pred             CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080            1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM   80 (258)
Q Consensus         1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||+++|+|++||+||.|||++|++.||+||+|||.++++++|+|||++|.++++++++++.++.++++++++.|++++|
T Consensus       286 ~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rwd~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~  365 (542)
T cd00684         286 LAKTIALITVIDDTYDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAW  365 (542)
T ss_pred             HHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999989999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080           81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      ++++++|++||+|+++|++||++||+++|.+|+|++++++++++++|+.+|+++++|+..+|+|+++++.++||+|||.|
T Consensus       366 ~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S  445 (542)
T cd00684         366 KDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIAT  445 (542)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhh
Confidence            99999999999999999999999999999999999999999999999999999999987779999999999999999999


Q ss_pred             hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcHHHHHHHHhhhhhhhhhhccCCCCC
Q 025080          161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKP-TAFPVALIERPFNIARVIEFLNKKGDWYT  239 (258)
Q Consensus       161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~-~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t  239 (258)
                      |++|+++|+++|+|.|||+|+|+|+|+|+++++++++++||++|++++++ +.+|++|+++++|++|+++++|+++||||
T Consensus       446 ~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t  525 (542)
T cd00684         446 YEDEMKRGDVASSIECYMKEYGVSEEEAREEIKKMIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFT  525 (542)
T ss_pred             hHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            99999999999999999999999999999999999999999999999997 78999999999999999999999999999


Q ss_pred             Cc-HHHHHHHHhhcccc
Q 025080          240 HS-HAIKDQIAAVLRDP  255 (258)
Q Consensus       240 ~~-~~~~~~i~~l~~~p  255 (258)
                      .| ..+|++|++||++|
T Consensus       526 ~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         526 HPEGEIKDHITSLLFEP  542 (542)
T ss_pred             CccHHHHHHHHHHhcCC
Confidence            99 78999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>PLN02890 geranyl diphosphate synthase Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>PLN02857 octaprenyl-diphosphate synthase Back     alignment and domain information
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II Back     alignment and domain information
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms] Back     alignment and domain information
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] Back     alignment and domain information
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head Back     alignment and domain information
>PRK10888 octaprenyl diphosphate synthase; Provisional Back     alignment and domain information
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 6e-63
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-52
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 2e-52
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 2e-52
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 2e-52
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 2e-52
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-52
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 3e-52
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 7e-51
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 9e-51
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 7e-33
2j5c_A569 Rational Conversion Of Substrate And Product Specif 3e-32
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 7e-31
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 8e-31
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 3e-28
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 6e-28
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 6e-21
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  237 bits (604), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 111/259 (42%), Positives = 164/259 (63%), Gaps = 1/259 (0%)
Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
           +TK I  ASI+DDT+D+Y  +EEL     A++RWDI  +D +PEYMK  YKALLD + E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355
Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
            Q +A+ GR   + Y K  M  L Q Y V+AKW  + Y P+++E+    L +CGY MLA 
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415
Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
            SF+GM D+   E F+W + DPKI  AS++ICR  +D+   +F+ +R    S +ECY+++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475
Query: 181 YGVSAXXXXXXXXXXXXNAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240
           YGV+A            +AWKD+N+EFLKPT  P  ++ R  N+ARV++ L ++GD YT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535
Query: 241 -SHAIKDQIAAVLRDPVTI 258
              A K  I ++L +P+ +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query258
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 7e-89
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 2e-84
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 4e-84
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 1e-83
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 6e-83
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 1e-81
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 6e-80
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 2e-79
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 3e-79
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 4e-31
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 6e-26
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 1e-23
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 2e-12
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 5e-08
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 3e-05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  272 bits (697), Expect = 7e-89
 Identities = 116/259 (44%), Positives = 171/259 (66%), Gaps = 1/259 (0%)

Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
           +TK I  ASI+DDT+D+Y  +EEL     A++RWDI  +D +PEYMK  YKALLD + E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355

Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
            Q +A+ GR   + Y K  M  L Q Y V+AKW  + Y P+++E+    L +CGY MLA 
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415

Query: 121 NSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIKQ 180
            SF+GM D+   E F+W + DPKI  AS++ICR  +D+   +F+ +R    S +ECY+++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475

Query: 181 YGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH 240
           YGV+A+E   VF + VE+AWKD+N+EFLKPT  P  ++ R  N+ARV++ L ++GD YT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535

Query: 241 S-HAIKDQIAAVLRDPVTI 258
              A K  I ++L +P+ +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.78
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 92.24
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 91.42
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 89.89
3rmg_A334 Octaprenyl-diphosphate synthase; structural genomi 88.01
3oyr_A345 Trans-isoprenyl diphosphate synthase; isoprenyl sy 86.5
3m0g_A297 Farnesyl diphosphate synthase; structural genomics 86.38
3mzv_A341 Decaprenyl diphosphate synthase; transferase, stru 86.28
1rtr_A301 Geranyltranstransferase; 2.50A {Staphylococcus aur 86.07
3ts7_A324 Geranyltranstransferase; isoprenoid synthesis, far 85.8
3p8l_A302 Geranyltranstransferase; isoprenyl synthase, struc 85.63
2ftz_A284 Geranyltranstransferase; TM0161, structural GE joi 84.97
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 84.88
3p8r_A302 Geranyltranstransferase; isoprenyl synthase, struc 83.68
4f62_A317 Geranyltranstransferase; enzyme function initiativ 83.35
2h8o_A335 Geranyltranstransferase; geranyltransferase,agroba 82.74
3lsn_A304 Geranyltranstransferase; structural genomics, prot 82.16
3apz_A348 Geranyl diphosphate synthase; prenyltransferase, a 81.89
1wy0_A342 Geranylgeranyl pyrophosphate synthetase; pyrococcu 80.96
4dhd_A358 Polyprenyl synthetase; isoprenoid synthesis, isopr 80.92
3pko_A334 Geranylgeranyl pyrophosphate synthase; isoprenyl d 80.4
3lom_A313 Geranyltranstransferase; geranyltransferase, struc 80.05
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=1.1e-79  Score=583.06  Aligned_cols=258  Identities=45%  Similarity=0.852  Sum_probs=242.2

Q ss_pred             CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080            1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM   80 (258)
Q Consensus         1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||++++++++||+||+|||+|||+.||+||+|||.+++++||+|||+||.+|+++++|++.++.++||.+++.|++++|
T Consensus       296 ~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w  375 (554)
T 3g4d_A          296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAM  375 (554)
T ss_dssp             HHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999888878999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080           81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      +++++||++||+|+++||+||+||||++|.+|+|++++++++++++|+.+|+++++|++++|+|+++++.++||+|||+|
T Consensus       376 ~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S  455 (554)
T 3g4d_A          376 IRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAE  455 (554)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccCCCCCC
Q 025080          161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYTH  240 (258)
Q Consensus       161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~D~~t~  240 (258)
                      |++|+++|+++|+|+|||+|||+|+|+|+++++++++++||+||++|++++++|++|+++++|++|+++++|+++||||.
T Consensus       456 ~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~  535 (554)
T 3g4d_A          456 HKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY  535 (554)
T ss_dssp             HCC------CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----C
T ss_pred             hhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            99999999999999999999999999999999999999999999999998899999999999999999999999999999


Q ss_pred             c-HHHHHHHHhhcccccCC
Q 025080          241 S-HAIKDQIAAVLRDPVTI  258 (258)
Q Consensus       241 ~-~~~~~~i~~l~~~p~~~  258 (258)
                      | .+||++|++||++||++
T Consensus       536 ~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          536 VGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             CCHHHHHHHHHHHTCCCCC
T ss_pred             ccHHHHHHHHHHhcCCCCC
Confidence            9 78999999999999985
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Back     alignment and structure
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Back     alignment and structure
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Back     alignment and structure
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Back     alignment and structure
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Back     alignment and structure
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Back     alignment and structure
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 Back     alignment and structure
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Back     alignment and structure
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Back     alignment and structure
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Back     alignment and structure
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Back     alignment and structure
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Back     alignment and structure
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* Back     alignment and structure
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Back     alignment and structure
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 258
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 2e-99
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-96
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 3e-39
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 4e-31
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  291 bits (745), Expect = 2e-99
 Identities = 74/258 (28%), Positives = 129/258 (50%), Gaps = 2/258 (0%)

Query: 1   MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEI 60
               I  A++IDD +D YG  +EL+L  +  +RWD  ++  LP YM++ Y  + +  ++ 
Sbjct: 70  AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA 129

Query: 61  EQDLAKEGRSSYLPYGKEKMQELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLAT 120
             D+ KE     L Y ++ + +LV+ YF +AKW+  GY P+ DEY  +  +S     + +
Sbjct: 130 AYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIIS 189

Query: 121 NSFLGMCD-VANKEAFEWISKDPKISTASSVICRLRNDIVSQQFEQKRGHIASGVECYIK 179
            ++    +   +    + + +   I   + +I RL +D+ +  FE  RG +   ++CY+K
Sbjct: 190 PTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMK 249

Query: 180 QYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKGDWYT 239
           +   S EE V      +  AWKDMN        FP  ++    NI RV +F+   GD + 
Sbjct: 250 ETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHGDGFG 309

Query: 240 HSHA-IKDQIAAVLRDPV 256
             H+   + IA +L +P 
Sbjct: 310 VQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query258
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.59
d2q80a1291 Geranylgeranyl pyrophosphate synthetase {Human (Ho 89.33
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 81.41
d1fpsa_348 Farnesyl diphosphate synthase (geranyltranstransfe 80.94
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=2.1e-77  Score=536.30  Aligned_cols=257  Identities=43%  Similarity=0.807  Sum_probs=242.8

Q ss_pred             CceeeeehheeccccCCCCCHHHHHHHHHHHHhccCcccCCCChhHHHHHHHHHHHHHHHHHHHHHhCCCCcccchHHHH
Q 025080            1 MTKTIYTASIIDDTFDAYGFFEELKLLAEAVQRWDIGAMDILPEYMKVLYKALLDTFNEIEQDLAKEGRSSYLPYGKEKM   80 (258)
Q Consensus         1 ~aK~~~~~~~~DD~~D~~gt~eel~~~~~ai~rWd~~~~~~lp~~~k~~~~al~~~~~e~~~~~~~~~~~~~~~~~~~~~   80 (258)
                      +||.+++++++||+||.|||+||++.||+||+|||.+++++||+|||++|.++++++++++.++.+.||++++.+++++|
T Consensus        70 ~aK~~~l~ti~DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w  149 (328)
T d5easa2          70 LVKTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERM  149 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhCCCCCChhhhhccccccccchhhHHHHHhhcCCCCChhhhhhccCchhHHHHHHhHHHHhcCccc
Q 025080           81 QELVQMYFVQAKWFSEGYVPTWDEYYPVGLVSCGYFMLATNSFLGMCDVANKEAFEWISKDPKISTASSVICRLRNDIVS  160 (258)
Q Consensus        81 ~~~~~~~~~Ea~w~~~~~~Ps~eEYl~~~~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S  160 (258)
                      ++++++|++||+|+++||+||+||||++|.+|+|+.+++..+++++|. ++++.++|.+++|+|+++++.++||+|||+|
T Consensus       150 ~~~~~~~l~EA~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s  228 (328)
T d5easa2         150 KEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTAT  228 (328)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHH
Confidence            999999999999999999999999999999999999999999999997 5678899999999999999999999999999


Q ss_pred             hHHHhhcCCcchhHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHhhhhhhhhhhccC-CCCC
Q 025080          161 QQFEQKRGHIASGVECYIKQYGVSAEEVVTVFTEEVENAWKDMNEEFLKPTAFPVALIERPFNIARVIEFLNKKG-DWYT  239 (258)
Q Consensus       161 ~~kE~~~g~~~n~V~~ym~e~g~s~eeA~~~i~~~i~~~~k~ln~~~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~-D~~t  239 (258)
                      +++|+++|+++|+|.|||+|||+|+|||+++++++|+++||+||+++++++++|++++++++|+||+++++|+++ ||||
T Consensus       229 ~~~E~~rG~~~s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt  308 (328)
T d5easa2         229 YEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYT  308 (328)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-------
T ss_pred             HHHHhccCCCCeeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999987 9999


Q ss_pred             Cc-HHHHHHHHhhcccccCC
Q 025080          240 HS-HAIKDQIAAVLRDPVTI  258 (258)
Q Consensus       240 ~~-~~~~~~i~~l~~~p~~~  258 (258)
                      +| +.+|++|++||++|||+
T Consensus       309 ~~~~~~k~~i~~ll~epi~~  328 (328)
T d5easa2         309 HPEKVLKPHIINLLVDSIKI  328 (328)
T ss_dssp             ----CCHHHHHHHHTCCCCC
T ss_pred             CchHHHHHHHHHHhccCCcC
Confidence            99 67999999999999986
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure