Citrus Sinensis ID: 025131

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccHHHHcccccEEEEcccccHHHHHHHHHHHHHHHcccccccEEEEEcccccccccccccEEEccHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccHccccHcccccccccccccEccccccccccEcccccccccccccccccccccccccccccccccccccccccEEEEEccccccHHcHHHHHHcccEEEEEccEcHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccEcHHHHHHHHHHHHHccccEEEEEEEEEEcHHHHHHHccccccEEEccccEEEEcccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHcccccHEEcccccHccc
Coil and Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncnrnlstsfispfangsvssdfsglrlrpdclnpdsfckskprspvitmvipftsgtaweqpppdlasyLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINstgttkggeklgyeTEAFAIYDvmgyvkppiftLCVGNAWGEAALLLGAgakgnraalpsstimikqpigriegqATDVEIARKEMKNVKAELVLYtekspedhgvvsdlkkaqli
Flexible Loop (DISEMBL)
mevatasapifglrtrmlatpprtsprtvncNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPdsfckskprspVITMVIPFtsgtaweqppPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINStgttkggeklGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSstimikqpigrieGQATDVEIARKEMKNVKAELVlytekspedhgvvsdlkkaqli
Low Complexity Region (SEG)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNawgeaalllgagakgnraalPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQLI
Disordered region (IsUnstruct)
*************************************SFISPF**********GLRLRPDCLNPDSFCK****SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIAR**MKNVKAELVLY********************
Disordered Region (DISOPRED)
*****************************************************************************TMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQLI
Disordered Region (DISEMBL)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQLI
Disordered Region (DISPRO)
**VATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDL******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPEDHGVVSDLKKAQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q8LB10	305	ATP-dependent Clp proteas	yes	no	0.852	0.718	0.673	7e-95
P74466	225	Putative ATP-dependent Cl	N/A	no	0.575	0.657	0.496	5e-38
Q9L4P4	228	Putative ATP-dependent Cl	yes	no	0.556	0.627	0.477	1e-34
Q8L770	330	ATP-dependent Clp proteas	no	no	0.560	0.436	0.506	2e-33
Q9X5N0	206	ATP-dependent Clp proteas	yes	no	0.513	0.640	0.514	8e-30
Q1DAT0	206	ATP-dependent Clp proteas	yes	no	0.513	0.640	0.514	1e-29
Q2LTK5	194	ATP-dependent Clp proteas	yes	no	0.521	0.690	0.450	2e-29
B0K533	195	ATP-dependent Clp proteas	yes	no	0.513	0.676	0.478	2e-29
B0KBA4	195	ATP-dependent Clp proteas	yes	no	0.513	0.676	0.478	2e-29
A0LEF1	202	ATP-dependent Clp proteas	yes	no	0.513	0.653	0.457	6e-29

>sp|Q8LB10|CLPR4_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic OS=Arabidopsis thaliana GN=CLPR4 PE=1 SV=1

 Score =  347 bits (889), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 194/257 (75%), Gaps = 38/257 (14%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 219 DVEIARKEMKNVKAEL--------------------------------------VLYTEK 240
           DVEIARKE+K++K E+                                      V+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 241 SPEDHGVVSDLKKAQLI 257
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Arabidopsis thaliana (taxid: 3702)

>sp|P74466|CLPR_SYNY3 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=clpR PE=3 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 79/159 (49%), Positives = 110/159 (69%), Gaps = 11/159 (6%)

Query: 88  AWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIY 137
           A++ PPPDL S L K RIVYLGM    S          VT+LI+A+ LYLQ++D +KPIY
Sbjct: 15  AFKTPPPDLESLLLKERIVYLGMPLFSSDEVKQQVGIDVTQLIIAQLLYLQFDDPDKPIY 74

Query: 138 LYINSTGTT-KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
            YINSTGT+   G+ +G+ETEAFAI D + Y+KPP+ T+C+G A G AA++L +G KG R
Sbjct: 75  FYINSTGTSWYTGDAVGFETEAFAICDTLNYIKPPVHTICIGQAMGTAAMILSSGTKGYR 134

Query: 197 AALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV 235
           A+LP +TI++ Q     +GQATD++I  KE+ + K  ++
Sbjct: 135 ASLPHATIVLNQNRTGAQGQATDIQIRAKEVISNKQTML 173

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q9L4P4|CLPR_SYNE7 Putative ATP-dependent Clp protease proteolytic subunit-like OS=Synechococcus elongatus (strain PCC 7942) GN=clpR PE=3 SV=1

 Score =  147 bits (370), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 74/155 (47%), Positives = 104/155 (67%), Gaps = 12/155 (7%)

Query: 102 KNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE 150
           K RI+YLGM    S          VTELI+A+ LYL++++ EKPIY YINSTGT+   G+
Sbjct: 31  KERIIYLGMPLFSSDDVKRQVGFDVTELIIAQLLYLEFDNPEKPIYFYINSTGTSWYTGD 90

Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
            +GYETEAFAI D M Y+KPP+ T+C+G A G AA++L  G  GNRA+LP +TI++ QP 
Sbjct: 91  AIGYETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSGGTPGNRASLPHATIVLNQPR 150

Query: 211 GRIEGQATDVEIARKE-MKNVKAELVLYTEKSPED 244
              +GQA+D++I  KE + N +  L ++   + +D
Sbjct: 151 TGAQGQASDIQIRAKEVLANKRTMLEIFARNTGQD 185

Has lost the two conserved residues (Ser and His) proposed to be part of the active site. Therefore it could be inactive.

Synechococcus elongatus (strain PCC 7942) (taxid: 1140)

>sp|Q8L770|CLPR3_ARATH ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic OS=Arabidopsis thaliana GN=CLPR3 PE=1 SV=1

 Score =  142 bits (359), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 102/150 (68%), Gaps = 6/150 (4%)

Query: 92  PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGE 150
           PPPDL S L   RIVY+GM  VP+VTEL++AE +YLQ+ D ++PIY+YINSTGTT+  GE
Sbjct: 118 PPPDLPSMLLDGRIVYIGMPLVPAVTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGE 177

Query: 151 KLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI 210
            +G E+E FAIYD +  +K  + T+CVG A G+A LLL AG KG R  +P +  MI+QP 
Sbjct: 178 TVGMESEGFAIYDSLMQLKNEVHTVCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPR 237

Query: 211 GRIEG--QATDVEIARKEM---KNVKAELV 235
               G   A+DV I  KE+   +++  EL+
Sbjct: 238 VPSSGLMPASDVLIRAKEVITNRDILVELL 267

Arabidopsis thaliana (taxid: 3702)

>sp|Q9X5N0|CLPP2_MYXXA ATP-dependent Clp protease proteolytic subunit 2 OS=Myxococcus xanthus GN=clpP2 PE=3 SV=1

 Score =  130 bits (327), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV LG      V  +I+A+ L+L+ ED +K I LYINS G        G 
Sbjct: 21  DIISRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M YVK P+ T+CVG A    A+LL AGAKG R ALPSS IMI QP+G + 
Sbjct: 73  VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD+EI  KE+  +KA+L
Sbjct: 133 GQATDIEIQAKEILRMKAKL 152

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Myxococcus xanthus (taxid: 34)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q1DAT0|CLPP1_MYXXD ATP-dependent Clp protease proteolytic subunit 1 OS=Myxococcus xanthus (strain DK 1622) GN=clpP1 PE=3 SV=1

 Score =  130 bits (326), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 89/140 (63%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV LG      V  +I+A+ L+L+ ED +K I LYINS G        G 
Sbjct: 21  DIYSRLLKDRIVMLGTEIDDDVANVIVAQLLFLESEDPDKDINLYINSPG--------GS 72

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M YVK P+ T+CVG A    A+LL AGAKG R ALPSS IMI QP+G + 
Sbjct: 73  VTAGLAIYDTMQYVKCPVSTICVGQAASMGAVLLLAGAKGKRYALPSSRIMIHQPLGGVR 132

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD+EI  KE+  +KA+L
Sbjct: 133 GQATDIEIQAKEILRMKAKL 152

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Myxococcus xanthus (strain DK 1622) (taxid: 246197)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|Q2LTK5|CLPP_SYNAS ATP-dependent Clp protease proteolytic subunit OS=Syntrophus aciditrophicus (strain SB) GN=clpP PE=3 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 8/142 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI++LG      V  LI+A+ L+L+ ED +K I+ Y+N+ G        G+
Sbjct: 19  DIYSRLLKDRIIFLGTPIDDEVANLIIAQLLFLESEDPDKEIFFYLNTPG--------GH 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            +   AIYD M Y+KPP+ T+CVG A    ALLL AG +G R+ALP S I+I QP+G  +
Sbjct: 71  ISSGMAIYDTMRYIKPPVATVCVGQAASMGALLLAAGEQGKRSALPHSRILIHQPLGGFQ 130

Query: 215 GQATDVEIARKEMKNVKAELVL 236
           GQATD++I  +E+  +K EL L
Sbjct: 131 GQATDIDIQAREILRLKDELSL 152

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Syntrophus aciditrophicus (strain SB) (taxid: 56780)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B0K533|CLPP_THEPX ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter sp. (strain X514) GN=clpP PE=3 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G 
Sbjct: 19  DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T  FAIYD M Y+KP + TLCVG A   AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71  ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD++I  + +  ++ +L
Sbjct: 131 GQATDIKIHAERILKLRDKL 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermoanaerobacter sp. (strain X514) (taxid: 399726)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|B0KBA4|CLPP_THEP3 ATP-dependent Clp protease proteolytic subunit OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=clpP PE=3 SV=1

 Score =  129 bits (324), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV+LG     +   L++A+ L+L+ ED +K I+LYINS G        G 
Sbjct: 19  DIFSRLLKDRIVFLGEEINDTTASLVIAQLLFLEAEDPDKDIWLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T  FAIYD M Y+KP + TLCVG A   AA LL AGAKG R ALP+S IMI QP+G ++
Sbjct: 71  ITAGFAIYDTMQYIKPDVVTLCVGMAASMAAFLLAAGAKGKRFALPNSEIMIHQPLGGMQ 130

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD++I  + +  ++ +L
Sbjct: 131 GQATDIKIHAERILKLRDKL 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (taxid: 340099)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

>sp|A0LEF1|CLPP_SYNFM ATP-dependent Clp protease proteolytic subunit OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=clpP PE=3 SV=1

 Score =  127 bits (320), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L ++RI++LG +    V  +I+A+ L+L+ ED +K I+ YINS G        G 
Sbjct: 19  DIYSRLLRDRIIFLGTAITDEVANVIIAQLLFLESEDPDKDIHFYINSPG--------GL 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + TLC+G A   AA+LL AG KG R ALP   IM+ QP+G  +
Sbjct: 71  VTAGLAIYDTMQFIKPNVSTLCMGQAASMAAILLAAGVKGKRYALPHVRIMLHQPMGGFQ 130

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATDVEI  KE+  ++ EL
Sbjct: 131 GQATDVEIQAKEILKLREEL 150

Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
224126447	310	predicted protein [Populus trichocarpa]	0.996	0.825	0.639	1e-104
255580803	314	ATP-dependent Clp protease proteolytic s	0.996	0.815	0.615	2e-97
297800408	305	hypothetical protein ARALYDRAFT_493172 [	0.852	0.718	0.673	3e-93
18414804	305	ATP-dependent Clp protease proteolytic s	0.852	0.718	0.673	4e-93
19698857	305	unknown protein [Arabidopsis thaliana] g	0.852	0.718	0.669	1e-92
260766931	305	ATP-dependent Clp protease [Eriobotrya j	0.988	0.832	0.654	1e-91
449459004	304	PREDICTED: ATP-dependent Clp protease pr	0.988	0.835	0.631	5e-88
359495737	297	PREDICTED: ATP-dependent Clp protease pr	0.988	0.855	0.626	1e-85
356563393	304	PREDICTED: ATP-dependent Clp protease pr	0.988	0.835	0.628	8e-85
297745678	282	unnamed protein product [Vitis vinifera]	0.929	0.847	0.637	1e-82

>gi|224126447|ref|XP_002329556.1| predicted protein [Populus trichocarpa] gi|118483146|gb|ABK93479.1| unknown [Populus trichocarpa] gi|222870265|gb|EEF07396.1| predicted protein [Populus trichocarpa]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/311 (63%), Positives = 224/311 (72%), Gaps = 55/311 (17%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTS----------------FISPFA 44
           M VATA+A  FG   RMLA+P   S R +N NR L+ S                F+SPFA
Sbjct: 1   MAVATATASSFGFHKRMLASP-TVSSRIINPNRTLALSSSPSTSSSSRASLSTCFLSPFA 59

Query: 45  NGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNR 104
            GS++ DFSG ++RP+CLNP S   SK +  V+TMVIP+T G+AWEQPPPDLASYL+KNR
Sbjct: 60  GGSITCDFSGTKIRPECLNPASISSSKGKRSVVTMVIPYTRGSAWEQPPPDLASYLFKNR 119

Query: 105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 164
           IVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTKGGEKLGYETEAFAIYDV
Sbjct: 120 IVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFAIYDV 179

Query: 165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIAR 224
           MGYVKPPIFTLCVGNAWGEAALLL AG++GNR+ALPSSTIM+KQPIGR +GQATDVE+AR
Sbjct: 180 MGYVKPPIFTLCVGNAWGEAALLLAAGSRGNRSALPSSTIMMKQPIGRFQGQATDVELAR 239

Query: 225 KEMKNVKAEL--------------------------------------VLYTEKSPEDHG 246
           KE+KNVK EL                                      V+Y E++ ED G
Sbjct: 240 KEIKNVKTELVNLLAKHIGKLPEEIEADISRPKYFSPTEAVEYGIIDKVIYNERTTEDRG 299

Query: 247 VVSDLKKAQLI 257
           VVSDLKKAQLI
Sbjct: 300 VVSDLKKAQLI 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580803|ref|XP_002531222.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis] gi|223529182|gb|EEF31158.1| ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 194/315 (61%), Positives = 217/315 (68%), Gaps = 59/315 (18%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLSTSFISPFANGS------------- 47
           MEVATA+A    L TRMLA+ P  S  T + NR L+ S  S  ++               
Sbjct: 1   MEVATATASTVALHTRMLASTPICS-HTSSSNRTLAFSSSSSSSSSPSLRSSSLSTSFFS 59

Query: 48  -------VSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYL 100
                  V  DFSG+++RP+CLNP S    + +  V+TMVIP+T G+AWEQPPPDLASYL
Sbjct: 60  SFSGSGSVIGDFSGMKVRPECLNPASISNFRGKRSVVTMVIPYTRGSAWEQPPPDLASYL 119

Query: 101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA 160
           +KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTKGGEKLGYETEAFA
Sbjct: 120 FKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKGGEKLGYETEAFA 179

Query: 161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDV 220
           I+DVMGYVKPPIFTLCVGNAWGEAALLL AG+KGNR+ALPSSTIMIKQPIGR +GQATDV
Sbjct: 180 IHDVMGYVKPPIFTLCVGNAWGEAALLLAAGSKGNRSALPSSTIMIKQPIGRFQGQATDV 239

Query: 221 EIARKEMKNVKAEL--------------------------------------VLYTEKSP 242
           E+ARKE+ NVKAEL                                      VLY E+  
Sbjct: 240 ELARKEISNVKAELVNLLAKYIGKSPGEIEADISRPKYFTPAEAVEYGIIDKVLYNERGT 299

Query: 243 EDHGVVSDLKKAQLI 257
           ED GVVSDLKKAQLI
Sbjct: 300 EDRGVVSDLKKAQLI 314

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800408|ref|XP_002868088.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata] gi|297313924|gb|EFH44347.1| hypothetical protein ARALYDRAFT_493172 [Arabidopsis lyrata subsp. lyrata]

 Score =  347 bits (889), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 194/257 (75%), Gaps = 38/257 (14%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSDF G +LR + LNP +   SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDFCGAKLRAESLNPLNLSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 219 DVEIARKEMKNVKAEL--------------------------------------VLYTEK 240
           DVEIARKE+K++K E+                                      V+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPSEAVEYGIIDKVVYNER 288

Query: 241 SPEDHGVVSDLKKAQLI 257
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18414804|ref|NP_567521.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana] gi|75301253|sp|Q8LB10.1|CLPR4_ARATH RecName: Full=ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic; Short=ClpR4; Flags: Precursor gi|21593086|gb|AAM65035.1| ATP-dependent Clp protease proteolytic subunit ClpR4, putative [Arabidopsis thaliana] gi|26450085|dbj|BAC42162.1| putative ClpP protease complex subunit ClpR4 [Arabidopsis thaliana] gi|332658442|gb|AEE83842.1| ATP-dependent Clp protease proteolytic subunit-related protein 4 [Arabidopsis thaliana]

 Score =  347 bits (889), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 173/257 (67%), Positives = 194/257 (75%), Gaps = 38/257 (14%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 219 DVEIARKEMKNVKAEL--------------------------------------VLYTEK 240
           DVEIARKE+K++K E+                                      V+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 241 SPEDHGVVSDLKKAQLI 257
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19698857|gb|AAL91164.1| unknown protein [Arabidopsis thaliana] gi|23197684|gb|AAN15369.1| unknown protein [Arabidopsis thaliana]

 Score =  345 bits (884), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 172/257 (66%), Positives = 194/257 (75%), Gaps = 38/257 (14%)

Query: 39  FISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLAS 98
           F+SP+  GS+SSD  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLAS
Sbjct: 49  FLSPYTGGSISSDLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLAS 108

Query: 99  YLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA 158
           YL+KNRIVYLGMS VPSVTELILAEFLYLQYED +KPIYLYINSTGTTK GEKLGY+TEA
Sbjct: 109 YLFKNRIVYLGMSLVPSVTELILAEFLYLQYEDEKKPIYLYINSTGTTKNGEKLGYDTEA 168

Query: 159 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQAT 218
           FAIYDVMGYVKPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQAT
Sbjct: 169 FAIYDVMGYVKPPIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQAT 228

Query: 219 DVEIARKEMKNVKAEL--------------------------------------VLYTEK 240
           DVEIARKE+K++K E+                                      V+Y E+
Sbjct: 229 DVEIARKEIKHIKTEMVKLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYNER 288

Query: 241 SPEDHGVVSDLKKAQLI 257
             +D GVVSDLKKAQLI
Sbjct: 289 GSQDRGVVSDLKKAQLI 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|260766931|gb|ACX50407.1| ATP-dependent Clp protease [Eriobotrya japonica]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 201/307 (65%), Positives = 220/307 (71%), Gaps = 53/307 (17%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR------------NLSTSFISPFANGSV 48
           MEVAT +A  F L TRMLATP  T PR  N  R            +LSTSF+ PFA  S+
Sbjct: 1   MEVAT-TASSFALHTRMLATP--TIPRARNTTRPHPTSSRSLPRASLSTSFLCPFAGNSL 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           SS+FSG +LRP  LNP SF  S+P+  V+TMVI F  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SSEFSGHKLRPSSLNPASFRGSEPKRGVVTMVILFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED  KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDTKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 228
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIM+KQPI R +GQATD+E+AR+E++
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMMKQPIARFQGQATDIELARREVR 237

Query: 229 NVKAEL--------------------------------------VLYTEKSPEDHGVVSD 250
           NVK EL                                      VLY E+S ED GVVSD
Sbjct: 238 NVKDELVKLFAKHVGKSTEQIEADIRRPKYFSPSEAVEYGIIDKVLYNERSTEDRGVVSD 297

Query: 251 LKKAQLI 257
           LKKAQLI
Sbjct: 298 LKKAQLI 304

Source: Eriobotrya japonica

Species: Eriobotrya japonica

Genus: Eriobotrya

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459004|ref|XP_004147236.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus] gi|449510487|ref|XP_004163680.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Cucumis sativus]

 Score =  330 bits (845), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 194/307 (63%), Positives = 215/307 (70%), Gaps = 53/307 (17%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLS------------TSFISPFANGSV 48
           MEVAT +A  F L  R+  +P  TS      NR LS            T+F+ PFA GSV
Sbjct: 1   MEVAT-TASSFALTKRI--SPLITSSHNGKSNRTLSMSSSSVRMAPLSTNFLIPFAGGSV 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           S +FSG++LRP  LNP+    SK +  V+TMVIPF  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SGEFSGVKLRPSSLNPNYSPGSKGKRGVVTMVIPFARGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED  KPIYLY+NSTGTTKGGEKLGYETEAFA+YDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDETKPIYLYVNSTGTTKGGEKLGYETEAFAVYDVMSYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 228
           KPPIFTLCVGNAWGEAALLL AGA GNR+ALPSSTIMIK+PI R +GQATDVEIARKE++
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAPGNRSALPSSTIMIKEPIARFQGQATDVEIARKEVR 237

Query: 229 NVKAEL--------------------------------------VLYTEKSPEDHGVVSD 250
           NVKAEL                                      VLY E++ ED GVVSD
Sbjct: 238 NVKAELVKLYAKHIGKSTEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERATEDRGVVSD 297

Query: 251 LKKAQLI 257
           LKKAQLI
Sbjct: 298 LKKAQLI 304

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495737|ref|XP_003635075.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Vitis vinifera]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/300 (62%), Positives = 215/300 (71%), Gaps = 46/300 (15%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNRNLST-----SFISPFANGSVSSDFSGL 55
           M VAT ++ +F   TRMLA P  T+  T + NR L++     + +SP+  GSV+SDFSG 
Sbjct: 1   MGVATMASNLF-THTRMLAPP--TNSGTTSSNRTLASFSLRANLLSPYVGGSVASDFSGQ 57

Query: 56  RLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS 115
           ++RP  L   SF  S  +   +TMVIPFT G+A +QPPPDL SYL+KNRIVYLGMS VPS
Sbjct: 58  KIRPSSLYSASFSGSHAKRGGVTMVIPFTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPS 117

Query: 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 175
           VTELILAEFLYLQY+D EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK PIFTL
Sbjct: 118 VTELILAEFLYLQYDDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTL 177

Query: 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL- 234
           CVGNAWGEAALLL AGAKGNR+ALPSSTIMIKQPI R +GQATD+++ARKE+KNVKAEL 
Sbjct: 178 CVGNAWGEAALLLAAGAKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELV 237

Query: 235 -------------------------------------VLYTEKSPEDHGVVSDLKKAQLI 257
                                                VLY E+S ED GVV+DLKKAQLI
Sbjct: 238 KLYAKHIGKSPEEIEADIRRPKYFSPSEAVEYGIIDKVLYNERSSEDRGVVADLKKAQLI 297

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563393|ref|XP_003549948.1| PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic-like [Glycine max]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 193/307 (62%), Positives = 215/307 (70%), Gaps = 53/307 (17%)

Query: 1   MEVATASAPIFGLRTRMLATPPRTSPRTVNCNR-----------NLSTSFISPFAN-GSV 48
           MEVATA++  F L   MLA P  +S RTV   R           +LSTSF++P+A   S 
Sbjct: 1   MEVATAASS-FALNKPMLALP--SSSRTVTPIRCMNTSTSPVRTSLSTSFVAPYAGICSA 57

Query: 49  SSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYL 108
           SS FSG +LRP  LNP SF  S  +  V+TMVIPF  G+AWEQPPPDLASYLYKNRIVYL
Sbjct: 58  SSPFSGHKLRPSSLNPASFLGSNAKRGVVTMVIPFQRGSAWEQPPPDLASYLYKNRIVYL 117

Query: 109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV 168
           GMS VPSVTELILAEFLYLQYED +KPIYLYINSTGTTKGGEKLGYETEAFAIYDVM YV
Sbjct: 118 GMSLVPSVTELILAEFLYLQYEDDDKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMRYV 177

Query: 169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMK 228
           KPPIFTLCVGNAWGEAALLL AGAKGNR+ALPSSTIMI+QPI R +GQATDV +AR+E+ 
Sbjct: 178 KPPIFTLCVGNAWGEAALLLAAGAKGNRSALPSSTIMIRQPIARFQGQATDVNLARREVN 237

Query: 229 NVKAEL--------------------------------------VLYTEKSPEDHGVVSD 250
           NVK EL                                      V+Y ++  ED GVVSD
Sbjct: 238 NVKTELVKLYAKHMEKTPEQIEADIQRPKYFSPSEAVEYGIIDKVIYNDRGTEDRGVVSD 297

Query: 251 LKKAQLI 257
           LKKA+LI
Sbjct: 298 LKKARLI 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745678|emb|CBI40932.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 181/284 (63%), Positives = 205/284 (72%), Gaps = 45/284 (15%)

Query: 17  MLATPPRTSPRTVNCNRNLST-----SFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSK 71
           MLA P  T+  T + NR L++     + +SP+  GSV+SDFSG ++RP  L   SF  S 
Sbjct: 1   MLAPP--TNSGTTSSNRTLASFSLRANLLSPYVGGSVASDFSGQKIRPSSLYSASFSGSH 58

Query: 72  PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
            +   +TMVIPFT G+A +QPPPDL SYL+KNRIVYLGMS VPSVTELILAEFLYLQY+D
Sbjct: 59  AKRGGVTMVIPFTRGSALDQPPPDLPSYLFKNRIVYLGMSLVPSVTELILAEFLYLQYDD 118

Query: 132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAG 191
            EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK PIFTLCVGNAWGEAALLL AG
Sbjct: 119 AEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKSPIFTLCVGNAWGEAALLLAAG 178

Query: 192 AKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL----------------- 234
           AKGNR+ALPSSTIMIKQPI R +GQATD+++ARKE+KNVKAEL                 
Sbjct: 179 AKGNRSALPSSTIMIKQPIARFQGQATDIDLARKEVKNVKAELVKLYAKHIGKSPEEIEA 238

Query: 235 ---------------------VLYTEKSPEDHGVVSDLKKAQLI 257
                                VLY E+S ED GVV+DLKKAQLI
Sbjct: 239 DIRRPKYFSPSEAVEYGIIDKVLYNERSSEDRGVVADLKKAQLI 282

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2130449	305	CLPR4 "CLP protease R subunit	0.976	0.822	0.617	1.5e-83
TAIR|locus:2031070	387	CLPR1 "CLP protease proteolyti	0.661	0.439	0.370	1.5e-21
UNIPROTKB|Q2KHU4	272	CLPP "Putative ATP-dependent C	0.634	0.599	0.342	1.7e-20
FB|FBgn0032229	253	CG5045 [Drosophila melanogaste	0.571	0.581	0.365	5.7e-20
TIGR_CMR|CJE_0185	194	CJE_0185 "ATP-dependent Clp pr	0.513	0.680	0.385	7.2e-20
UNIPROTKB|P0A6G7	207	clpP [Escherichia coli K-12 (t	0.626	0.777	0.352	9.2e-20
TIGR_CMR|CHY_0325	195	CHY_0325 "ATP-dependent Clp pr	0.552	0.728	0.346	1.2e-19
TIGR_CMR|GSU_1792	199	GSU_1792 "ATP-dependent Clp pr	0.575	0.743	0.356	1.2e-19
TIGR_CMR|ECH_0901	199	ECH_0901 "ATP-dependent Clp pr	0.657	0.849	0.324	1.9e-19
UNIPROTKB|E2QUV8	301	CLPP "ATP-dependent Clp protea	0.894	0.764	0.305	2.5e-19

TAIR|locus:2130449 CLPR4 "CLP protease R subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 775 (277.9 bits), Expect = 1.5e-83, Sum P(2) = 1.5e-83
 Identities = 165/267 (61%), Positives = 193/267 (72%)

Query:     1 MEVATASAPIFG-LRTRMLATPP------RTSPR---TVNCNRNLSTSFISPFANGSVSS 50
             MEVA A+A  F  LR R  A  P      R+ PR   + +   +LS  F+SP+  GS+SS
Sbjct:     1 MEVAAATATSFTTLRARTSAIIPSSTRNLRSKPRFSSSSSLRASLSNGFLSPYTGGSISS 60

Query:    51 DFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGM 110
             D  G +LR + LNP +F  SKP+  V+TMVIPF+ G+A EQPPPDLASYL+KNRIVYLGM
Sbjct:    61 DLCGAKLRAESLNPLNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGM 120

Query:   111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP 170
             S VPSVTELILAEFLYLQYED EKPIYLYINSTGTTK GEKLGY+TEAFAIYDVMGYVKP
Sbjct:   121 SLVPSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKP 180

Query:   171 PIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNV 230
             PIFTLCVGN                    PSSTIMIKQPI R +GQATDVEIARKE+K++
Sbjct:   181 PIFTLCVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHI 240

Query:   231 KAELV-LYTE---KSPEDHGVVSDLKK 253
             K E+V LY++   KSPE   + +D+K+
Sbjct:   241 KTEMVKLYSKHIGKSPEQ--IEADMKR 265

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2031070 CLPR1 "CLP protease proteolytic subunit 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 253 (94.1 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 67/181 (37%), Positives = 95/181 (52%)

Query:    86 GTAWEQP---PPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS 142
             G   E+P   PPDL S L   RI YLGM  VP+VTEL++A+F++L Y++  KPIYLYINS
Sbjct:   159 GGGSERPRTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINS 218

Query:   143 TGT-TKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPS 201
              GT  +  E +G ETEA+AI D + Y K  ++T+  G                     P 
Sbjct:   219 PGTQNEKMETVGSETEAYAIADTISYCKSDVYTINCGMAFGQAAMLLSLGKKGYRAVQPH 278

Query:   202 STIMIKQP-IGRIEGQATDVEIARKEMK-NVKAELVLY---TEKSPEDHGVVSDLKKAQL 256
             S+  +  P + R  G A D+ I  KE+  N +  + L    T KS E   +  D+K+ + 
Sbjct:   279 SSTKLYLPKVNRSSGAAIDMWIKAKELDANTEYYIELLAKGTGKSKEQ--INEDIKRPKY 336

Query:   257 I 257
             +
Sbjct:   337 L 337

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009840 "chloroplastic endopeptidase Clp complex" evidence=IDA

GO:0009532 "plastid stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|Q2KHU4 CLPP "Putative ATP-dependent Clp protease proteolytic subunit, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 220 (82.5 bits), Expect = 1.7e-20, Sum P(2) = 1.7e-20
 Identities = 60/175 (34%), Positives = 86/175 (49%)

Query:    75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
             P+I +V+  T G    +   D+ S L + RIV +      SV  L++A+ L+LQ E  +K
Sbjct:    53 PLIPIVVEQT-GRG--ERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKK 109

Query:   135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXX 194
             PI++YINS G        G  T   AIYD M Y+  PI T CVG                
Sbjct:   110 PIHMYINSPG--------GVVTSGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 161

Query:   195 XXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVV 248
                  P+S IMI QP G   GQATD+ I  +E+  +K +L  +Y + + +   V+
Sbjct:   162 MRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYSIYAKHTKQSLQVI 216

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

FB|FBgn0032229 CG5045 [Drosophila melanogaster (taxid:7227)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/156 (36%), Positives = 81/156 (51%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K RI+ L  +    ++  ++A+ L+LQ E+V KPI+LYINS G        G 
Sbjct:    45 DIFSRLLKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPG--------GV 96

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
              T   AIYD M YVKPPI T CVG                     P++ IMI QP G  +
Sbjct:    97 VTAGLAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQPSGGAQ 156

Query:   215 GQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVS 249
             GQATD+ I  +E+  +K +L  +Y + +   +  +S
Sbjct:   157 GQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMS 192

GO:0005739 "mitochondrion" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|CJE_0185 CJE_0185 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 54/140 (38%), Positives = 72/140 (51%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+RI+ L       +   I+A+ L+L+ ED  K IYLYINS G        G 
Sbjct:    18 DIYSRLLKDRIIMLSGEIHDELAASIVAQLLFLEAEDPTKDIYLYINSPG--------GV 69

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
              T  F+IYD M Y+KP + T+C+G                     P+S IMI QP+G   
Sbjct:    70 ITSGFSIYDTMNYIKPDVCTICIGQAASMGAFLLSCGAEGKRFALPNSRIMIHQPLGGAR 129

Query:   215 GQATDVEIARKEMKNVKAEL 234
             GQATD+EI  KE+  +K  L
Sbjct:   130 GQATDIEIQAKEILRLKTIL 149

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6G7 clpP [Escherichia coli K-12 (taxid:83333)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 62/176 (35%), Positives = 91/176 (51%)

Query:    72 PRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYED 131
             P   ++ MVI  TS     +   D+ S L K R+++L       +  LI+A+ L+L+ E+
Sbjct:    12 PHMALVPMVIEQTSRG---ERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAEN 68

Query:   132 VEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXX 191
              EK IYLYINS G        G  T   +IYD M ++KP + T+C+G             
Sbjct:    69 PEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAG 120

Query:   192 XXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKA---ELV-LYTEKSPE 243
                     P+S +MI QP+G  +GQATD+EI  +E+  VK    EL+ L+T +S E
Sbjct:   121 AKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLE 176

GO:0009408 "response to heat" evidence=IEP

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0006515 "misfolded or incompletely synthesized protein catabolic process" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009266 "response to temperature stimulus" evidence=EXP

TIGR_CMR|CHY_0325 CHY_0325 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 53/153 (34%), Positives = 81/153 (52%)

Query:    95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
             D+ S L K+R +++G      V  L++A+ L+L+ ED EK I+LYINS G        G 
Sbjct:    20 DIWSRLLKDRTIFIGGPIDDHVANLVIAQMLFLEAEDPEKDIHLYINSPG--------GV 71

Query:   155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
              T   AIYD M Y+KP + T+C+G                     P + IMI QP+G ++
Sbjct:    72 ITAGMAIYDTMQYIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPYARIMIHQPLGGVQ 131

Query:   215 GQATDVEIARKE---MKNVKAELVLYTEKSPED 244
             GQATD++I  +E   M+++  EL+      P++
Sbjct:   132 GQATDIDIHAREILRMRDMLNELLTKHTGQPKE 164

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|GSU_1792 GSU_1792 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 56/157 (35%), Positives = 79/157 (50%)

Query:    79 MVIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIY 137
             M++P     T   +   D+ S L K+RI++LG      V  L++A+ L+L+ ED +K I+
Sbjct:     1 MLVPIVVEQTGRGERSYDIYSRLLKDRIIFLGGPVDDHVANLVIAQMLFLEAEDPDKDIH 60

Query:   138 LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXX 197
             LYINS G        G  T   AIYD M Y+K P+ T+CVG                   
Sbjct:    61 LYINSPG--------GVVTSGMAIYDTMQYIKAPVSTICVGQAASMGALLLSGGEKGKRF 112

Query:   198 XXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
                 S IMI QP+G  +GQATD+ I  +E+  +K  L
Sbjct:   113 SLKHSRIMIHQPLGGFQGQATDIHIHAQEILKLKKRL 149

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|ECH_0901 ECH_0901 "ATP-dependent Clp protease, proteolytic subunit ClpP" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 58/179 (32%), Positives = 92/179 (51%)

Query:    77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPI 136
             +T+V      T+  +   D+ S L K RI+++       +  LI+A+ ++L+ E+ EK I
Sbjct:     1 MTLVPMVVEQTSRGERAYDIYSRLLKERIIFITGPIEDQMASLIVAQLIFLESENPEKEI 60

Query:   137 YLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXX 196
              +YINS G        G  T   +IYD M Y+KP + TLC+G                  
Sbjct:    61 CMYINSPG--------GVVTAGLSIYDTMQYIKPKVSTLCLGQAASMGSLLLAAGEPGMR 112

Query:   197 XXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHG-VVSDLKK 253
                P+S IMI QP G  +GQATD+EI  KE+ ++K  L  +Y + +  D   VV+++++
Sbjct:   113 YALPNSRIMIHQPSGGFQGQATDIEIHAKEILDIKGRLNDIYVKHTGRDLSEVVANMER 171

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|E2QUV8 CLPP "ATP-dependent Clp protease proteolytic subunit" [Canis lupus familiaris (taxid:9615)]

 Score = 231 (86.4 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 76/249 (30%), Positives = 114/249 (45%)

Query:     3 VATASAPIFGLRTRMLAT-PPRTSPRT-VNCNRNLSTSFISPFANGSVSSDFSGLRLRPD 60
             VA   +P  G   R+ A  PPR +PRT +   R+L  +         +  + + +R RP 
Sbjct:    12 VAVGRSPALG--PRLAARFPPRRTPRTGLALQRSLHVTAARALPLIPIVVEQT-VR-RPR 67

Query:    61 CLNPDSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELI 120
              L P      +    +  +++P   G    +   D+ S L + RIV +      SV  L+
Sbjct:    68 ELGPGGSRGLRAALTLAAVLLPQGRG----ERAYDIYSRLLRERIVCVMGPIDDSVASLV 123

Query:   121 LAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNX 180
             +A+ L+LQ E  +KPI++YINS G        G  T   AIYD M Y+  PI T CVG  
Sbjct:   124 IAQLLFLQSESNKKPIHMYINSPG--------GMVTSGLAIYDTMQYILNPICTWCVGQA 175

Query:   181 XXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTE 239
                                P+S IMI QP G   GQATD+ I  +E+  +K +L  +Y +
Sbjct:   176 ASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLYGIYAK 235

Query:   240 KSPEDHGVV 248
              + +   V+
Sbjct:   236 HTKQSLQVI 244

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LB10	CLPR4_ARATH	No assigned EC number	0.6731	0.8521	0.7180	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	LOW CONFIDENCE prediction!
3rd Layer	3.4.21.92	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	eugene3.01180098	RecName- Full=ATP-dependent Clp protease proteolytic subunit; (311 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.34330001	annotation not avaliable (50 aa)			•						0.502
	gw1.XV.374.1	hypothetical protein (403 aa)	•		•				•		0.501
	gw1.XII.172.1	hypothetical protein (427 aa)	•		•				•		0.458

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
PRK12552	222	PRK12552, PRK12552, ATP-dependent Clp protease-lik	2e-64
cd07017	171	cd07017, S14_ClpP_2, Caseinolytic protease (ClpP)	8e-62
PRK00277	200	PRK00277, clpP, ATP-dependent Clp protease proteol	1e-44
COG0740	200	COG0740, ClpP, Protease subunit of ATP-dependent C	3e-44
pfam00574	182	pfam00574, CLP_protease, Clp protease	7e-43
TIGR00493	192	TIGR00493, clpP, ATP-dependent Clp endopeptidase,	2e-40
PRK12553	207	PRK12553, PRK12553, ATP-dependent Clp protease pro	5e-35
PRK12551	196	PRK12551, PRK12551, ATP-dependent Clp protease pro	3e-32
PRK14514	221	PRK14514, PRK14514, ATP-dependent Clp protease pro	7e-30
CHL00028	200	CHL00028, clpP, ATP-dependent Clp protease proteol	2e-29
PRK14513	201	PRK14513, PRK14513, ATP-dependent Clp protease pro	1e-24
cd07013	162	cd07013, S14_ClpP, Caseinolytic protease (ClpP) is	2e-24
PRK14512	197	PRK14512, PRK14512, ATP-dependent Clp protease pro	1e-22
cd00394	161	cd00394, Clp_protease_like, Caseinolytic protease	6e-11
cd07016	160	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP)	5e-04

>gnl|CDD|183588 PRK12552, PRK12552, ATP-dependent Clp protease-like protein; Reviewed

 Score =  200 bits (510), Expect = 2e-64
 Identities = 86/185 (46%), Positives = 116/185 (62%), Gaps = 15/185 (8%)

Query: 74  SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAE 123
           SP++ +  P+        PPPDL S L K RIVYLG+               VTELI+A+
Sbjct: 1   SPIMAVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQ 60

Query: 124 FLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWG 182
            LYL+++D EKPIY YINSTGT+   G+ +G+ETEAFAI D M Y+KPP+ T+C+G A G
Sbjct: 61  LLYLEFDDPEKPIYFYINSTGTSWYTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMG 120

Query: 183 EAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKA----ELVLYT 238
            AA++L AG KG RA+LP +TI++ QP     GQATD++I  KE+ + K      L   T
Sbjct: 121 TAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKEVLHNKRTMLEILSRNT 180

Query: 239 EKSPE 243
            ++ E
Sbjct: 181 GQTVE 185

Length = 222

>gnl|CDD|132928 cd07017, S14_ClpP_2, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score =  191 bits (488), Expect = 8e-62
 Identities = 72/153 (47%), Positives = 91/153 (59%), Gaps = 12/153 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++LG      V  LI+A+ LYL+ ED +KPIYLYINS G        G 
Sbjct: 1   DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GS 52

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M Y+KPP+ T+C+G A    ALLL AG KG R ALP+S IMI QP+G   
Sbjct: 53  VTAGLAIYDTMQYIKPPVSTICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAG 112

Query: 215 GQATDVEIARKEMKNVKAELVLY----TEKSPE 243
           GQA+D+EI  KE+  ++  L       T +  E
Sbjct: 113 GQASDIEIQAKEILRLRRRLNEILAKHTGQPLE 145

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 171

>gnl|CDD|178955 PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  148 bits (377), Expect = 1e-44
 Identities = 72/162 (44%), Positives = 95/162 (58%), Gaps = 13/162 (8%)

Query: 74  SPVITMVIPFTS-GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDV 132
             ++ MVI  TS G        D+ S L K RI++LG      +  LI+A+ L+L+ ED 
Sbjct: 5   MNLVPMVIEQTSRGERS----YDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDP 60

Query: 133 EKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGA 192
           +K IYLYINS G        G  T   AIYD M ++KP + T+C+G A    A LL AGA
Sbjct: 61  DKDIYLYINSPG--------GSVTAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGA 112

Query: 193 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
           KG R ALP+S IMI QP+G  +GQATD+EI  +E+  +K  L
Sbjct: 113 KGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRL 154

Length = 200

>gnl|CDD|223811 COG0740, ClpP, Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

 Score =  147 bits (373), Expect = 3e-44
 Identities = 70/174 (40%), Positives = 101/174 (58%), Gaps = 15/174 (8%)

Query: 75  PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
            ++ MVI     T+  +   D+ S L K RI++LG      +  LI+A+ L+L+ ED +K
Sbjct: 2   ALVPMVIE---QTSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDK 58

Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
            IYLYINS G        G  T   AIYD M ++KPP+ T+C+G A    ++LL AG KG
Sbjct: 59  DIYLYINSPG--------GSVTAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKG 110

Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTE---KSPED 244
            R ALP++ IMI QP G  +GQA+D+EI  +E+  +K  L  +Y E   ++ E 
Sbjct: 111 KRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLNRIYAEHTGQTLEK 164

Length = 200

>gnl|CDD|201316 pfam00574, CLP_protease, Clp protease

 Score =  143 bits (363), Expect = 7e-43
 Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 9/148 (6%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++LG      V  LI+A+ L+L+ ED +K IYLYINS G        G 
Sbjct: 8   DIYSRLLKERIIFLGGEIDDEVANLIIAQLLFLEAEDPDKDIYLYINSPG--------GS 59

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G A    + +L AG KG R ALP++ IMI QP G  +
Sbjct: 60  VTAGLAIYDTMQFIKPDVSTICLGLAASMGSFILAAGTKGKRFALPNARIMIHQPSGGAQ 119

Query: 215 GQATDVEIARKEMKNVKAELV-LYTEKS 241
           GQA+D+EI  +E+  ++  L  +Y E +
Sbjct: 120 GQASDIEIQAEEILKIRERLNEIYAEHT 147

The Clp protease has an active site catalytic triad. In E. coli Clp protease, ser-111, his-136 and asp-185 form the catalytic triad. Cyanophora parodoxa clpP-B has lost all of these active site residues and is therefore inactive. Some members contain one or two large insertions. Length = 182

>gnl|CDD|188055 TIGR00493, clpP, ATP-dependent Clp endopeptidase, proteolytic subunit ClpP

 Score =  137 bits (347), Expect = 2e-40
 Identities = 65/140 (46%), Positives = 85/140 (60%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RI++L      +V   I+A+ L+L+ ED EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKERIIFLSGEVNDNVANSIVAQLLFLEAEDPEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G A    A LL AGAKG R +LP+S IMI QP+G  +
Sbjct: 71  ITAGLAIYDTMQFIKPDVSTICIGQAASMGAFLLAAGAKGKRFSLPNSRIMIHQPLGGAQ 130

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD+EI   E+  +K  L
Sbjct: 131 GQATDIEIQANEILRLKGLL 150

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores at least 370 by This model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 192

>gnl|CDD|237133 PRK12553, PRK12553, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  124 bits (313), Expect = 5e-35
 Identities = 55/158 (34%), Positives = 87/158 (55%), Gaps = 11/158 (6%)

Query: 80  VIP-FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL 138
           ++P F   T++     D  + L++ RI++LG     +    ++A+ L L+  D ++ I L
Sbjct: 11  ILPSFIERTSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITL 70

Query: 139 YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA 198
           YINS G        G  T   AIYD + +++P + T+C G A    A+LL AG  G R A
Sbjct: 71  YINSPG--------GSVTAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFA 122

Query: 199 LPSSTIMIKQP--IGRIEGQATDVEIARKEMKNVKAEL 234
           LP++ I+I QP   G I GQA+D+EI  +E+  ++  L
Sbjct: 123 LPNARILIHQPSLGGGIRGQASDLEIQAREILRMRERL 160

Length = 207

>gnl|CDD|139060 PRK12551, PRK12551, ATP-dependent Clp protease proteolytic subunit; Reviewed

 Score =  116 bits (292), Expect = 3e-32
 Identities = 60/140 (42%), Positives = 80/140 (57%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L + RI++LG          I+A+ L+L+ ED EK IYLYINS G        G 
Sbjct: 17  DIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GS 68

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
             +   I+D M +VKP + T+CVG A    A LL AGAKG R++L  S IMI QP+G   
Sbjct: 69  VYDGLGIFDTMQHVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGAR 128

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQA+D+ I   E+  +K  L
Sbjct: 129 GQASDIRIQADEILFLKERL 148

Length = 196

>gnl|CDD|184722 PRK14514, PRK14514, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score =  111 bits (278), Expect = 7e-30
 Identities = 58/144 (40%), Positives = 80/144 (55%), Gaps = 10/144 (6%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L  +RI++LG          I A+ LYL   D  K I +YINS G        G 
Sbjct: 46  DVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GS 97

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
                 IYD M ++   + T+C G A   A++LL AG KG R+ALP S +MI QP+G  +
Sbjct: 98  VYAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQ 157

Query: 215 GQATDVEIARKEMKNVKAELVLYT 238
           GQA+D+EI  +E++ +K E  LYT
Sbjct: 158 GQASDIEITAREIQKLKKE--LYT 179

Length = 221

>gnl|CDD|214340 CHL00028, clpP, ATP-dependent Clp protease proteolytic subunit

 Score =  109 bits (274), Expect = 2e-29
 Identities = 50/162 (30%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           DL + LY+ R+++LG      +   ++   +YL  ED  K +YL+INS G        G 
Sbjct: 22  DLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GS 73

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP-IGRI 213
                AIYD M +VKP + T+C+G A   A+ +L  G    R A P + +MI QP     
Sbjct: 74  VISGLAIYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFY 133

Query: 214 EGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVS-DLKK 253
           EGQA++  +  +E+  ++  +  +Y +++ +   V+S D+++
Sbjct: 134 EGQASEFVLEAEELLKLRETITRVYAQRTGKPLWVISEDMER 175

Length = 200

>gnl|CDD|237742 PRK14513, PRK14513, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 96.5 bits (240), Expect = 1e-24
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+++G      +   I+A+ L L  ++ E+ I +YIN  G        G 
Sbjct: 19  DIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GE 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
                AIYD M Y+K P+ T+CVG A    ++LL AG KG R ALP+S IMI Q      
Sbjct: 71  VYAGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFR 130

Query: 215 GQATDVEIARKEMKNVKAELV 235
           G   D+E+  KE+  ++  LV
Sbjct: 131 GNTPDLEVQAKEVLFLRDTLV 151

Length = 201

>gnl|CDD|132924 cd07013, S14_ClpP, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 95.0 bits (236), Expect = 2e-24
 Identities = 45/125 (36%), Positives = 63/125 (50%), Gaps = 9/125 (7%)

Query: 118 ELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 177
               A+ L+L   + EK IYLYINS G        G      AIYD + ++K  + T+  
Sbjct: 15  NQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIID 66

Query: 178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-L 236
           G A    +++  AGAKG R  LP++ +MI QP G   G ATD+ I    +  V+  LV  
Sbjct: 67  GLAASMGSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSA 126

Query: 237 YTEKS 241
           Y  K+
Sbjct: 127 YAHKT 131

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 162

>gnl|CDD|237741 PRK14512, PRK14512, ATP-dependent Clp protease proteolytic subunit; Provisional

 Score = 91.8 bits (228), Expect = 1e-22
 Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 8/119 (6%)

Query: 116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTL 175
           ++EL   + L L+  D +KPI++YI+S G        G     FAI++++ +VKP +FT+
Sbjct: 36  LSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFVKPKVFTI 87

Query: 176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
            VG     AAL+  A  K +R +LP++  ++ QP+   +G ATD+EI   E+  VK+EL
Sbjct: 88  GVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSEL 146

Length = 197

>gnl|CDD|132923 cd00394, Clp_protease_like, Caseinolytic protease (ClpP) is an ATP-dependent protease

 Score = 58.9 bits (143), Expect = 6e-11
 Identities = 22/120 (18%), Positives = 40/120 (33%), Gaps = 12/120 (10%)

Query: 117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 176
            + + A+  + + ++  K I L +N+ G        G       I D +   + P+    
Sbjct: 13  ADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYV 64

Query: 177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQA--TDVEIARKEMKNVKAEL 234
            G A      +  A  K      P + +    PIG   G    T  E  ++ +    A  
Sbjct: 65  GGQAASAGYYIATAANK--IVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARF 122

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Another family included in this class of enzymes is the signal peptide peptidase A (SppA; S49) which is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Mutagenesis studies suggest that the catalytic center of SppA comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-terminal domain. Others, including sohB peptidase, protein C, protein 1510-N and archaeal signal peptide peptidase, do not contain the amino-terminal domain. The third family included in this hierarchy is nodulation formation efficiency D (NfeD) which is a membrane-bound Clp-class protease and only found in bacteria and archaea. Majority of the NfeD genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named stomatin operon partner protein (STOPP). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 from Pyrococcus horikoshii has been shown to possess serine protease activity having a Ser-Lys catalytic dyad. Length = 161

>gnl|CDD|132927 cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

 Score = 39.1 bits (92), Expect = 5e-04
 Identities = 29/122 (23%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 134 KPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAK 193
             I + INS G        G      AIY+ +   K  +     G A   A+++  AG +
Sbjct: 31  SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAASAASVIAMAGDE 82

Query: 194 GNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLK 252
                 P++ +MI  P     G A D+  A   +  +   +   Y EK+      +S L 
Sbjct: 83  --VEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALM 140

Query: 253 KA 254
            A
Sbjct: 141 DA 142

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function. Length = 160

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG0840	275	consensus ATP-dependent Clp protease, proteolytic	100.0
COG0740	200	ClpP Protease subunit of ATP-dependent Clp proteas	100.0
PRK12552	222	ATP-dependent Clp protease-like protein; Reviewed	100.0
PRK14513	201	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK14514	221	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
CHL00028	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK12551	196	ATP-dependent Clp protease proteolytic subunit; Re	100.0
TIGR00493	191	clpP ATP-dependent Clp protease, proteolytic subun	100.0
PRK00277	200	clpP ATP-dependent Clp protease proteolytic subuni	100.0
PRK14512	197	ATP-dependent Clp protease proteolytic subunit; Pr	100.0
PRK12553	207	ATP-dependent Clp protease proteolytic subunit; Re	100.0
PF00574	182	CLP_protease: Clp protease; InterPro: IPR001907 In	100.0
cd07017	171	S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-	100.0
cd07013	162	S14_ClpP Caseinolytic protease (ClpP) is an ATP-de	100.0
cd07016	160	S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-	99.94
cd07015	172	Clp_protease_NfeD Nodulation formation efficiency	99.87
cd00394	161	Clp_protease_like Caseinolytic protease (ClpP) is	99.86
cd07020	187	Clp_protease_NfeD_1 Nodulation formation efficienc	99.79
cd07021	178	Clp_protease_NfeD_like Nodulation formation effici	99.7
cd07023	208	S49_Sppa_N_C Signal peptide peptidase A (SppA), a	99.2
TIGR00706	207	SppA_dom signal peptide peptidase SppA, 36K type.	99.11
cd07014	177	S49_SppA Signal peptide peptidase A. Signal peptid	98.93
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	98.87
cd07022	214	S49_Sppa_36K_type Signal peptide peptidase A (SppA	98.85
COG0616	317	SppA Periplasmic serine proteases (ClpP class) [Po	98.74
cd07019	211	S49_SppA_1 Signal peptide peptidase A (SppA), a se	98.71
PF01972	285	SDH_sah: Serine dehydrogenase proteinase; InterPro	98.5
cd07018	222	S49_SppA_67K_type Signal peptide peptidase A (SppA	98.12
COG1030	436	NfeD Membrane-bound serine protease (ClpP class) [	97.91
PRK11778	330	putative inner membrane peptidase; Provisional	97.9
PRK10949	618	protease 4; Provisional	97.82
COG3904	245	Predicted periplasmic protein [Function unknown]	96.02
TIGR00513	316	accA acetyl-CoA carboxylase, carboxyl transferase,	96.01
PRK05724	319	acetyl-CoA carboxylase carboxyltransferase subunit	95.78
cd06558	195	crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hy	95.77
TIGR03134	238	malonate_gamma malonate decarboxylase, gamma subun	95.72
CHL00198	322	accA acetyl-CoA carboxylase carboxyltransferase al	95.42
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	95.25
PRK12319	256	acetyl-CoA carboxylase subunit alpha; Provisional	94.96
PLN03230	431	acetyl-coenzyme A carboxylase carboxyl transferase	94.65
PRK06688	259	enoyl-CoA hydratase; Provisional	93.83
PRK08258	277	enoyl-CoA hydratase; Provisional	92.61
PRK06072	248	enoyl-CoA hydratase; Provisional	92.49
PRK05869	222	enoyl-CoA hydratase; Validated	92.48
PF00378	245	ECH: Enoyl-CoA hydratase/isomerase family; InterPr	92.37
TIGR00705	584	SppA_67K signal peptide peptidase SppA, 67K type.	92.35
PRK07511	260	enoyl-CoA hydratase; Provisional	92.2
PRK06210	272	enoyl-CoA hydratase; Provisional	91.96
PRK03580	261	carnitinyl-CoA dehydratase; Provisional	91.93
PRK05981	266	enoyl-CoA hydratase; Provisional	91.84
TIGR01117	512	mmdA methylmalonyl-CoA decarboxylase alpha subunit	91.75
PRK06495	257	enoyl-CoA hydratase; Provisional	91.54
PRK06023	251	enoyl-CoA hydratase; Provisional	91.13
PRK07260	255	enoyl-CoA hydratase; Provisional	91.01
TIGR03189	251	dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hy	90.98
PRK07509	262	enoyl-CoA hydratase; Provisional	90.93
PRK07854	243	enoyl-CoA hydratase; Provisional	90.86
PRK07468	262	enoyl-CoA hydratase; Provisional	90.81
PRK09674	255	enoyl-CoA hydratase-isomerase; Provisional	90.8
PRK06143	256	enoyl-CoA hydratase; Provisional	90.67
PRK06190	258	enoyl-CoA hydratase; Provisional	90.63
PRK07110	249	polyketide biosynthesis enoyl-CoA hydratase; Valid	90.56
PLN02600	251	enoyl-CoA hydratase	90.54
PRK05864	276	enoyl-CoA hydratase; Provisional	90.4
PRK11423	261	methylmalonyl-CoA decarboxylase; Provisional	90.25
PRK08260	296	enoyl-CoA hydratase; Provisional	89.84
TIGR03210	256	badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Memb	89.77
PRK08138	261	enoyl-CoA hydratase; Provisional	89.66
PLN02664	275	enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA	89.37
TIGR02280	256	PaaB1 phenylacetate degradation probable enoyl-CoA	89.32
PRK05809	260	3-hydroxybutyryl-CoA dehydratase; Validated	89.09
PRK08150	255	enoyl-CoA hydratase; Provisional	89.0
PRK10949	618	protease 4; Provisional	88.93
PRK09076	258	enoyl-CoA hydratase; Provisional	88.86
PRK05995	262	enoyl-CoA hydratase; Provisional	88.84
PLN02888	265	enoyl-CoA hydratase	88.82
PRK05870	249	enoyl-CoA hydratase; Provisional	88.77
PLN02851	407	3-hydroxyisobutyryl-CoA hydrolase-like protein	88.58
PRK07938	249	enoyl-CoA hydratase; Provisional	88.57
PRK05980	260	enoyl-CoA hydratase; Provisional	88.55
TIGR01929	259	menB naphthoate synthase (dihydroxynaphthoic acid	88.27
PRK06142	272	enoyl-CoA hydratase; Provisional	88.21
PLN03214	278	probable enoyl-CoA hydratase/isomerase; Provisiona	88.15
PF01039	493	Carboxyl_trans: Carboxyl transferase domain; Inter	88.14
PRK08140	262	enoyl-CoA hydratase; Provisional	88.1
PRK07189	301	malonate decarboxylase subunit beta; Reviewed	87.91
PLN02921	327	naphthoate synthase	87.8
PRK06563	255	enoyl-CoA hydratase; Provisional	87.45
PRK07327	268	enoyl-CoA hydratase; Provisional	87.34
TIGR03133	274	malonate_beta malonate decarboxylase, beta subunit	87.19
PRK09120	275	p-hydroxycinnamoyl CoA hydratase/lyase; Validated	87.17
PRK09245	266	enoyl-CoA hydratase; Provisional	87.17
PLN02988	381	3-hydroxyisobutyryl-CoA hydrolase	86.92
PRK08290	288	enoyl-CoA hydratase; Provisional	86.57
PRK05617	342	3-hydroxyisobutyryl-CoA hydrolase; Provisional	86.51
PRK05862	257	enoyl-CoA hydratase; Provisional	86.46
PRK07658	257	enoyl-CoA hydratase; Provisional	86.41
PRK07657	260	enoyl-CoA hydratase; Provisional	86.21
PRK06144	262	enoyl-CoA hydratase; Provisional	86.15
PRK05674	265	gamma-carboxygeranoyl-CoA hydratase; Validated	86.1
PRK06494	259	enoyl-CoA hydratase; Provisional	86.08
PRK08321	302	naphthoate synthase; Validated	85.92
PRK07396	273	dihydroxynaphthoic acid synthetase; Validated	85.85
PRK08272	302	enoyl-CoA hydratase; Provisional	85.81
PRK07112	255	polyketide biosynthesis enoyl-CoA hydratase; Valid	85.8
PRK12478	298	enoyl-CoA hydratase; Provisional	85.23
PRK06127	269	enoyl-CoA hydratase; Provisional	84.85
PRK06213	229	enoyl-CoA hydratase; Provisional	84.84
PRK08788	287	enoyl-CoA hydratase; Validated	84.58
PRK08139	266	enoyl-CoA hydratase; Validated	84.33
PRK07827	260	enoyl-CoA hydratase; Provisional	84.27
COG1024	257	CaiD Enoyl-CoA hydratase/carnithine racemase [Lipi	83.9
PLN02820	569	3-methylcrotonyl-CoA carboxylase, beta chain	83.75
COG0825	317	AccA Acetyl-CoA carboxylase alpha subunit [Lipid m	83.48
PLN02157	401	3-hydroxyisobutyryl-CoA hydrolase-like protein	83.31
TIGR03200	360	dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hy	82.6
PRK07659	260	enoyl-CoA hydratase; Provisional	82.38
TIGR00515	285	accD acetyl-CoA carboxylase, carboxyl transferase,	81.34
PRK08252	254	enoyl-CoA hydratase; Provisional	81.05
PRK07799	263	enoyl-CoA hydratase; Provisional	80.76

>KOG0840 consensus ATP-dependent Clp protease, proteolytic subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.1e-59  Score=419.40  Aligned_cols=157  Identities=48%  Similarity=0.768  Sum_probs=153.8

Q ss_pred             CCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCC
Q 025131           91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (257)
Q Consensus        91 ~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~  170 (257)
                      ++|+||||+||++||||||++||++++++|++|||||+++|++|||+|||||||        |++++|+||||+|+++++
T Consensus        80 ~~~~Di~s~LlreRIi~lg~~Idd~va~~viaqlL~Ld~ed~~K~I~lyINSPG--------G~vtaglAIYDtMq~ik~  151 (275)
T KOG0840|consen   80 ERPYDIYSRLLRERIVFLGQPIDDDVANLVIAQLLYLDSEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKP  151 (275)
T ss_pred             CCcccHHHHHHHhheeeeCCcCcHHHHHHHHHHHHHhhccCCCCCeEEEEeCCC--------CccchhhhHHHHHHhhCC
Confidence            789999999999999999999999999999999999999999999999999999        999999999999999999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHH
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVS  249 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~  249 (257)
                      +|.|+|+|+|||||+|||++|+||+|+++||+++|||||.++++||+.||.++|+|+.+.|+.+. +|+++||+|.|+|+
T Consensus       152 ~V~Tic~G~Aas~aalLLaaG~KG~R~alPnsriMIhQP~gga~Gqa~Di~i~akE~~~~k~~l~~i~a~~Tgq~~e~i~  231 (275)
T KOG0840|consen  152 DVSTICVGLAASMAALLLAAGAKGKRYALPNSRIMIHQPSGGAGGQATDIVIQAKELMRIKEYLNEIYAKHTGQPLEVIE  231 (275)
T ss_pred             CceeeehhhHHhHHHHHHhcCCCcceeecCCceeEEeccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999988


Q ss_pred             -HHHhhc
Q 025131          250 -DLKKAQ  255 (257)
Q Consensus       250 -~l~r~~  255 (257)
                       +|.|+.
T Consensus       232 ~d~dRd~  238 (275)
T KOG0840|consen  232 KDMDRDR  238 (275)
T ss_pred             hhhcccc
Confidence             777754

>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=100.00  E-value=2e-55  Score=386.46  Aligned_cols=167  Identities=41%  Similarity=0.683  Sum_probs=159.6

Q ss_pred             eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (257)
Q Consensus        76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v  155 (257)
                      ++|+++|.   ++.+++++|||++|+++|||||+++|++.+++.+++||++|+.+++.|+|+|||||||        |+|
T Consensus         3 ~~~~~~e~---~~~~~~~~di~s~llk~riI~l~g~I~~~~a~~i~aqll~Lea~~~~k~I~lyINSpG--------G~V   71 (200)
T COG0740           3 LVPMVIEQ---TSRGERSYDIYSRLLKERIIFLGGEIEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSV   71 (200)
T ss_pred             CCccccCc---ccCCCChhhHHHHhhhccEEEEeeeechHHHHHHHHHHHHHHhcCCCCCeEEEEeCCC--------ccc
Confidence            45666654   5677889999999999999999999999999999999999999999999999999999        999


Q ss_pred             hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  235 (257)
Q Consensus       156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~  235 (257)
                      ++|+||||+||+++++|+|+|+|+|||||++|++||+||||+++|||++|||||+++++|||+|++++|+|++++++.+.
T Consensus        72 ~aG~AIydtm~~ik~~V~ti~~G~AaSmgs~l~~aG~~g~r~~lPnsrimIHqP~gg~~G~a~Di~i~A~ei~~~~~~l~  151 (200)
T COG0740          72 TAGLAIYDTMQFIKPPVSTICMGQAASMGSVLLMAGDKGKRFALPNARIMIHQPSGGAQGQASDIEIHAREILKIKERLN  151 (200)
T ss_pred             chhHHHHHHHHhcCCCeEEEEecHHHhHHHHHHhcCCCCCceeCCCceEEEecCCccCccCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHhcCCCHHHHHHHHh
Q 025131          236 -LYTEKSPEDHGVVSDLKK  253 (257)
Q Consensus       236 -iY~erTg~~~evI~~l~r  253 (257)
                       +|+++||++.|+++.+++
T Consensus       152 ~i~a~~TGq~~e~i~~d~d  170 (200)
T COG0740         152 RIYAEHTGQTLEKIEKDTD  170 (200)
T ss_pred             HHHHHHcCCCHHHHHHhhc
Confidence             999999999999996665

>PRK12552 ATP-dependent Clp protease-like protein; Reviewed

Probab=100.00  E-value=1.3e-54  Score=387.00  Aligned_cols=178  Identities=46%  Similarity=0.823  Sum_probs=166.3

Q ss_pred             eeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChh----------HHHHHHHHHHhchhcCCCCceEEEEcCCCCC-
Q 025131           78 TMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPS----------VTELILAEFLYLQYEDVEKPIYLYINSTGTT-  146 (257)
Q Consensus        78 ~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~----------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~-  146 (257)
                      .+.+|+......+.+|+||+++||++|||||+++|+++          ++++|++|||||+.+|+++||+|||||||++ 
T Consensus         5 ~~~~~~~~~~~~~~~~~d~~~~Ll~~Rii~l~~~i~~~~~~~~~~~~~~a~~iiaqLl~L~~~~~~k~I~lyINSpGGsv   84 (222)
T PRK12552          5 AVQAPYYGDAVMRTPPPDLPSLLLKERIVYLGLPLFSDDDAKRQVGMDVTELIIAQLLYLEFDDPEKPIYFYINSTGTSW   84 (222)
T ss_pred             cccccccCCCCCCCCCcCHHHHHhhCCEEEECCeeccccccccchhHhHHHHHHHHHHHHhccCCCCCEEEEEeCCCCCc
Confidence            34566654455567899999999999999999999999          9999999999999999999999999999988 


Q ss_pred             CCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHH
Q 025131          147 KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKE  226 (257)
Q Consensus       147 ~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~e  226 (257)
                      .+|+.+|++++|+||||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++++||++|++++++|
T Consensus        85 ~~G~~iG~v~~glaIyD~m~~ik~~V~Tv~~G~AaS~AslIl~aG~kg~R~alpns~iMIHqP~~~~~G~A~di~~~a~e  164 (222)
T PRK12552         85 YTGDAIGFETEAFAICDTMRYIKPPVHTICIGQAMGTAAMILSAGTKGQRASLPHATIVLHQPRSGARGQATDIQIRAKE  164 (222)
T ss_pred             cccccccccccHHHHHHHHHhcCCCeEEEEEeehhhHHHHHHhCCCCCceecCCCcEEEeccCCcccccCHHHHHHHHHH
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          227 MKNVKAELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       227 l~~~k~~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      |+++++.+. +|+++||++.|+|+++++.+
T Consensus       165 l~~~r~~l~~iya~~TG~~~e~I~~d~~rd  194 (222)
T PRK12552        165 VLHNKRTMLEILSRNTGQTVEKLSKDTDRM  194 (222)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHhcCC
Confidence            999999999 99999999999999766543

>PRK14513 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=2.1e-52  Score=368.11  Aligned_cols=168  Identities=35%  Similarity=0.544  Sum_probs=158.2

Q ss_pred             eeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh
Q 025131           77 ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET  156 (257)
Q Consensus        77 ~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~  156 (257)
                      +|+++|.   +..++.|.|||++||++|||||+++|++++|++|++||+||+.+|++++|+|||||||        |+|+
T Consensus         4 ~p~~~~~---~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~L~~~~~~~~I~l~INSpG--------G~v~   72 (201)
T PRK14513          4 IPYVIEQ---TGRGERMYDIYSRLLKDRIIFVGTPIESQMANTIVAQLLLLDSQNPEQEIQMYINCPG--------GEVY   72 (201)
T ss_pred             CCccccc---CCCCccccCHHHHHhhCCEEEECCEEcHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------Cchh
Confidence            4555543   4556788999999999999999999999999999999999999999999999999999        9999


Q ss_pred             hHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-
Q 025131          157 EAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-  235 (257)
Q Consensus       157 aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-  235 (257)
                      +|++|||+|++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||+++++|+++|++++++|++++++.+. 
T Consensus        73 ~GlaIyd~m~~~~~~V~Ti~~G~AaS~As~il~aG~kgkR~~~pna~iMIHqp~~~~~G~a~di~~~a~el~~~~~~l~~  152 (201)
T PRK14513         73 AGLAIYDTMRYIKAPVSTICVGIAMSMGSVLLMAGDKGKRMALPNSRIMIHQGSAGFRGNTPDLEVQAKEVLFLRDTLVD  152 (201)
T ss_pred             hHHHHHHHHHhcCCCEEEEEEeeehhhHHHHHhcCCCCcEEecCCeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHhcCCCHHHHHHHHhhc
Q 025131          236 LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       236 iY~erTg~~~evI~~l~r~~  255 (257)
                      +|+++||++.++|+++++.+
T Consensus       153 iya~~Tg~~~~~I~~~~~rd  172 (201)
T PRK14513        153 IYHRHTDLPHEKLLRDMERD  172 (201)
T ss_pred             HHHHHHCcCHHHHHHHhccC
Confidence            99999999999999776643

>PRK14514 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=9.3e-52  Score=368.61  Aligned_cols=169  Identities=34%  Similarity=0.532  Sum_probs=159.3

Q ss_pred             eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (257)
Q Consensus        76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v  155 (257)
                      ++|++++.   +..+++++|||++||++|||||+++||+.+++++++||+||+.+++++||+|||||||        |+|
T Consensus        30 ~~p~~~~~---~~~~~~~~d~~~~ll~~Riifl~~~Idd~~a~~i~aqLl~L~~~~~~~~I~lyINSpG--------Gsv   98 (221)
T PRK14514         30 LNPYILEE---RQLNVTQMDVFSRLMMDRIIFLGTQIDDYTANTIQAQLLYLDSVDPGKDISIYINSPG--------GSV   98 (221)
T ss_pred             ccceeeee---CCCCCcccCHHHHHhhCcEEEECCEEcHHHHHHHHHHHHHHhccCCCCCEEEEEECCC--------cch
Confidence            55666543   4456789999999999999999999999999999999999999999999999999999        999


Q ss_pred             hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  235 (257)
Q Consensus       156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~  235 (257)
                      ++|++|||+|++++++|+|+|+|+|||||++||++|++|+|+++|||++|||||+++.+||++|++++++|++++++.+.
T Consensus        99 ~aGlaIyd~m~~~~~~V~tv~~G~AAS~AslIl~aG~~gkR~~~pna~iMiHqP~~~~~G~a~di~i~a~el~~~~~~i~  178 (221)
T PRK14514         99 YAGLGIYDTMQFISSDVATICTGMAASMASVLLVAGTKGKRSALPHSRVMIHQPLGGAQGQASDIEITAREIQKLKKELY  178 (221)
T ss_pred             hhHHHHHHHHHhcCCCEEEEEEEEehhHHHHHHhcCCCCceeeCCCCEEEeccCCcccCCCcchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHhcCCCHHHHHHHHhhc
Q 025131          236 -LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       236 -iY~erTg~~~evI~~l~r~~  255 (257)
                       +|+++||++.++|+++++.+
T Consensus       179 ~iya~~TG~~~e~I~~~~~rd  199 (221)
T PRK14514        179 TIIADHSGTPFDKVWADSDRD  199 (221)
T ss_pred             HHHHHHHCcCHHHHHHHhhcC
Confidence             99999999999999776643

>CHL00028 clpP ATP-dependent Clp protease proteolytic subunit

Probab=100.00  E-value=2.7e-51  Score=360.47  Aligned_cols=167  Identities=31%  Similarity=0.568  Sum_probs=157.6

Q ss_pred             eecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHH
Q 025131           81 IPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA  160 (257)
Q Consensus        81 ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlA  160 (257)
                      +|+......+.+|.|++++||++|||||+++||+++++++++||+||+.+|+.++|+|||||||        |+|++|++
T Consensus         8 ~~~~~~~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~ll~L~~~~~~~~I~l~INSpG--------G~v~~g~a   79 (200)
T CHL00028          8 VPFRLPGEEDATWVDLYNRLYRERLLFLGQEVDDEIANQLIGLMVYLSIEDDTKDLYLFINSPG--------GSVISGLA   79 (200)
T ss_pred             eeeecCCCCCcccccHHHHHhcCCEEEECCeecHHHHHHHHHHHHHHhccCCCCCEEEEEeCCC--------cchhhHHH
Confidence            3443345566789999999999999999999999999999999999999999999999999999        99999999


Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc-cccCHHHHHHHHHHHHHHHHHHH-HHH
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR-IEGQATDVEIARKEMKNVKAELV-LYT  238 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~-~~GqAsDi~i~a~el~~~k~~l~-iY~  238 (257)
                      |||+|++++++|+|+|+|+|+|||++||++|+||+|+++|||++|||||+++ .+||++|++++++|++++++.+. +|+
T Consensus        80 Iyd~m~~~~~~V~Tv~~G~AaS~aslIl~aG~kg~R~~~p~s~imiHqp~~~~~~G~a~di~~~a~~l~~~~~~~~~~ya  159 (200)
T CHL00028         80 IYDTMQFVKPDVHTICLGLAASMASFILAGGEITKRLAFPHARVMIHQPASSFYEGQASEFVLEAEELLKLRETITRVYA  159 (200)
T ss_pred             HHHHHHhcCCCEEEEEEEehHHHHHHHHhCCCCCCEEecCCCeEEEecCccCcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998 89999999999999999999988 999


Q ss_pred             HhcCCCHHHHHHHHhhc
Q 025131          239 EKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       239 erTg~~~evI~~l~r~~  255 (257)
                      ++||++.++|+++++.+
T Consensus       160 ~~Tg~~~e~i~~~~~r~  176 (200)
T CHL00028        160 QRTGKPLWVISEDMERD  176 (200)
T ss_pred             HHHCcCHHHHHHHhhcC
Confidence            99999999999777654

>PRK12551 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=1.6e-50  Score=354.67  Aligned_cols=161  Identities=38%  Similarity=0.590  Sum_probs=154.2

Q ss_pred             CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  166 (257)
Q Consensus        87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~  166 (257)
                      ...++.+.|||++||++|||||+++||++++++++++|+||+.+|++++|+|||||||        |+|++|++|||+|+
T Consensus         9 ~~~~~~~~d~~~~l~~~Riifl~~~i~~~~a~~ii~~Ll~l~~~~~~~~I~l~INSpG--------G~v~~g~aIyd~m~   80 (196)
T PRK12551          9 SGRGERAFDIYSRLLRERIIFLGEPVTSDSANRIVAQLLFLEAEDPEKDIYLYINSPG--------GSVYDGLGIFDTMQ   80 (196)
T ss_pred             CCCCccccCHHHHHhcCcEEEECCeecHHHHHHHHHHHHHhhccCCCCCEEEEEeCCC--------cchhhHHHHHHHHH
Confidence            3344578999999999999999999999999999999999999999999999999999        99999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH  245 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~  245 (257)
                      +++++|+|+|+|+|||||++||++|++|+|+++|||++|||||+++.+||++|++++++|++++++.+. +|+++||++.
T Consensus        81 ~~~~~V~t~~~G~AaS~AslIl~aG~~~~R~~~p~a~iMIHqP~~~~~G~a~di~~~a~~l~~~~~~~~~~ya~~tG~~~  160 (196)
T PRK12551         81 HVKPDVHTVCVGLAASMGAFLLCAGAKGKRSSLQHSRIMIHQPLGGARGQASDIRIQADEILFLKERLNTELSERTGQPL  160 (196)
T ss_pred             hcCCCEEEEEEEEehhHHHHHHhCCCCCceecCCCCEEEEecCCcccCCCcchHHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhc
Q 025131          246 GVVSDLKKAQ  255 (257)
Q Consensus       246 evI~~l~r~~  255 (257)
                      ++|+++++.+
T Consensus       161 ~~i~~~~~rd  170 (196)
T PRK12551        161 ERIQEDTDRD  170 (196)
T ss_pred             HHHHHHhhcC
Confidence            9999777654

>TIGR00493 clpP ATP-dependent Clp protease, proteolytic subunit ClpP

Probab=100.00  E-value=2.5e-46  Score=325.98  Aligned_cols=162  Identities=41%  Similarity=0.653  Sum_probs=155.1

Q ss_pred             CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  166 (257)
Q Consensus        87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~  166 (257)
                      +..++.|+||+++||++|||||+|+|++++++++++||++|+.+++.++|+|||||||        |++++|++|||+|+
T Consensus        10 ~~~~~~~~d~~~~l~~~riI~l~g~I~~~~~~~ii~~L~~l~~~~~~~~i~l~InSpG--------G~v~~g~~I~d~l~   81 (191)
T TIGR00493        10 TGRGERSFDIYSRLLKERIIFLSGEVNDSVANLIVAQLLFLEAEDPEKDIYLYINSPG--------GSITAGLAIYDTMQ   81 (191)
T ss_pred             CCCCcccccHHHHHhcCeEEEEccEEChHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CCHHHHHHHHHHHH
Confidence            4456788999999999999999999999999999999999999999999999999999        99999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH  245 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~  245 (257)
                      +++++|+|+|+|+|+|||++|+++|++++|+++|||++|||||+++.+|++.|+++++++++++++.+. +|+++||++.
T Consensus        82 ~~~~~v~t~~~G~AaSaaslI~~aG~~~~r~~~p~s~imiH~p~~~~~G~a~d~~~~a~~l~~~~~~~~~~ya~~tg~~~  161 (191)
T TIGR00493        82 FIKPDVSTICIGQAASMGAFLLSAGAKGKRFSLPNSRIMIHQPLGGAQGQASDIEIQANEILRLKGLLNDILANHTGQSL  161 (191)
T ss_pred             hcCCCEEEEEEEeeccHHHHHHhcCCCCcEEecCCceEEEecCcccccCCcchhHHHHHHHHHHHHHHHHHHHHHHCcCH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHhhcC
Q 025131          246 GVVSDLKKAQL  256 (257)
Q Consensus       246 evI~~l~r~~~  256 (257)
                      ++++++++.++
T Consensus       162 ~~i~~~~~~~~  172 (191)
T TIGR00493       162 EQIEKDTERDF  172 (191)
T ss_pred             HHHHHHhhCCc
Confidence            99998877553

This model for the proteolytic subunit ClpP has been rebuilt to a higher stringency. In every bacterial genome with the ClpXP machine, a ClpP protein will be found that scores with this model. In general, this ClpP member will be encoded adjacent to the clpX gene, as were all examples used in the seed alignment. A large fraction of genomes have one or more additional ClpP paralogs, sometimes encoded nearby and sometimes elsewhere. The stringency of the trusted cutoff used here excludes the more divergent ClpP paralogs from being called authentic ClpP by this model.

>PRK00277 clpP ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=4.1e-44  Score=313.85  Aligned_cols=162  Identities=42%  Similarity=0.672  Sum_probs=155.1

Q ss_pred             CCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHH
Q 025131           86 GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVM  165 (257)
Q Consensus        86 ~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m  165 (257)
                      .+..++.|+||+++||++|||||+|+|++++++.++++|++|+.+++.++|+|||||||        |++++|++|||+|
T Consensus        14 ~~~~~~~~~~~~~~l~~~rii~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~InSpG--------G~v~~g~~I~d~i   85 (200)
T PRK00277         14 QTSRGERSYDIYSRLLKERIIFLGGEVEDHMANLIVAQLLFLEAEDPDKDIYLYINSPG--------GSVTAGLAIYDTM   85 (200)
T ss_pred             cCCCCcccccHHHHhhcCcEEEECCEECHHHHHHHHHHHHHhhccCCCCCEEEEEECCC--------CcHHHHHHHHHHH
Confidence            34567789999999999999999999999999999999999999999999999999999        9999999999999


Q ss_pred             hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCC
Q 025131          166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPED  244 (257)
Q Consensus       166 ~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~  244 (257)
                      ++++++|+|+|.|.|+|+|++|+++|++++|+++|||++|||||+++.+|++.|+++++++++++++.+. +|+++||++
T Consensus        86 ~~~~~~v~t~~~G~aaS~a~~I~~ag~~~~r~~~p~s~imih~p~~~~~G~a~di~~~a~~l~~~~~~~~~~~a~~tg~~  165 (200)
T PRK00277         86 QFIKPDVSTICIGQAASMGAFLLAAGAKGKRFALPNSRIMIHQPLGGFQGQATDIEIHAREILKLKKRLNEILAEHTGQP  165 (200)
T ss_pred             HhcCCCEEEEEEeEeccHHHHHHhcCCCCCEEEcCCceEEeccCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHHhhc
Q 025131          245 HGVVSDLKKAQ  255 (257)
Q Consensus       245 ~evI~~l~r~~  255 (257)
                      .++++++++.+
T Consensus       166 ~~~i~~~~~~~  176 (200)
T PRK00277        166 LEKIEKDTDRD  176 (200)
T ss_pred             HHHHHHHhhCC
Confidence            99999776644

>PRK14512 ATP-dependent Clp protease proteolytic subunit; Provisional

Probab=100.00  E-value=1e-43  Score=311.45  Aligned_cols=160  Identities=29%  Similarity=0.484  Sum_probs=152.8

Q ss_pred             CCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc
Q 025131           89 WEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV  168 (257)
Q Consensus        89 ~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i  168 (257)
                      ....+.|++++||++|+|||+|+|++.+++.|+++|++|+.+++.++|+|||||||        |+|++|++|||+|+++
T Consensus         9 ~~~~~~~~~~~l~~~r~I~i~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v~ag~aI~d~i~~~   80 (197)
T PRK14512          9 KQTGIDKSLEKFLKSRSIVIAGEINKDLSELFQEKILLLEALDSKKPIFVYIDSEG--------GDIDAGFAIFNMIRFV   80 (197)
T ss_pred             ccCCcchHHHHHhcCcEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CCHHHHHHHHHHHHhC
Confidence            34467899999999999999999999999999999999998888999999999999        9999999999999999


Q ss_pred             CCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHH
Q 025131          169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGV  247 (257)
Q Consensus       169 ~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~ev  247 (257)
                      +++|+|+|.|+|+|||++|+++|++++|+++|||++|||||+++++|+++|+++++++++++++.+. +|+++||++.++
T Consensus        81 ~~~V~t~v~G~AaSaaslIl~ag~~~~R~~~p~s~imiHqP~~~~~G~a~di~~~a~~l~~~~~~i~~~~a~~tg~~~~~  160 (197)
T PRK14512         81 KPKVFTIGVGLVASAAALIFLAAKKESRFSLPNARYLLHQPLSGFKGVATDIEIYANELNKVKSELNDIIAKETGQELDK  160 (197)
T ss_pred             CCCEEEEEEeeeHhHHHHHHhcCCcCceeECCCCcEEEEcCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHhhcC
Q 025131          248 VSDLKKAQL  256 (257)
Q Consensus       248 I~~l~r~~~  256 (257)
                      ++.+++.++
T Consensus       161 i~~~~~~d~  169 (197)
T PRK14512        161 VEKDTDRDF  169 (197)
T ss_pred             HHHhhhcCc
Confidence            998876543

>PRK12553 ATP-dependent Clp protease proteolytic subunit; Reviewed

Probab=100.00  E-value=3.6e-42  Score=303.14  Aligned_cols=170  Identities=32%  Similarity=0.542  Sum_probs=156.4

Q ss_pred             eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (257)
Q Consensus        76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v  155 (257)
                      ++|.+++.   ...+..+.||+++||++|+|||+|+|++.+++.++++|++|+.+++.++|+|||||||        |++
T Consensus        11 ~~p~~~~~---~~~~~~~~~~~~~l~~~r~I~l~g~I~~~~~~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~v   79 (207)
T PRK12553         11 ILPSFIER---TSYGVKESDPYNKLFEERIIFLGGQVDDASANDVMAQLLVLESIDPDRDITLYINSPG--------GSV   79 (207)
T ss_pred             CCCccccc---CCCCCccccHHHHHhcCeEEEEcceECHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCC--------CcH
Confidence            45544432   3344567999999999999999999999999999999999999988999999999999        999


Q ss_pred             hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC--cccccCHHHHHHHHHHHHHHHHH
Q 025131          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI--GRIEGQATDVEIARKEMKNVKAE  233 (257)
Q Consensus       156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~--~~~~GqAsDi~i~a~el~~~k~~  233 (257)
                      ++|++|||+|++++++|+|+|.|.|+|+|++|++||++|+|+++|||+||||||+  ++.+|++.|++++++|++++++.
T Consensus        80 ~~g~~I~d~i~~~~~~v~t~~~G~aaSaa~lI~~ag~~~~R~~~p~s~imiH~p~~~~~~~G~a~d~~~~~~~l~~~~~~  159 (207)
T PRK12553         80 TAGDAIYDTIQFIRPDVQTVCTGQAASAGAVLLAAGTPGKRFALPNARILIHQPSLGGGIRGQASDLEIQAREILRMRER  159 (207)
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeehhhHHHHHHHcCCcCcEEECCCchhhhcCccccCCCccCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  67899999999999999999999


Q ss_pred             HH-HHHHhcCCCHHHHHHHHhhcC
Q 025131          234 LV-LYTEKSPEDHGVVSDLKKAQL  256 (257)
Q Consensus       234 l~-iY~erTg~~~evI~~l~r~~~  256 (257)
                      +. +|+++||++.++++.+++.+.
T Consensus       160 ~~~~ya~~tg~~~e~i~~~~~~~~  183 (207)
T PRK12553        160 LERILAEHTGQSVEKIRKDTDRDK  183 (207)
T ss_pred             HHHHHHHHhCCCHHHHHHHHhcCc
Confidence            97 999999999999998776543

>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=1.4e-41  Score=290.19  Aligned_cols=158  Identities=32%  Similarity=0.511  Sum_probs=148.4

Q ss_pred             CCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC
Q 025131           90 EQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK  169 (257)
Q Consensus        90 ~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~  169 (257)
                      ++.|+|||++|+++|+|||+++||+++++.++++|++|+.+++.++|+|||||||        |+|++|++|||+|++++
T Consensus         3 ~~~~~~i~~~l~~~r~i~l~g~I~~~~~~~~~~~L~~l~~~~~~~~i~i~INSpG--------G~v~~g~~i~~~i~~~~   74 (182)
T PF00574_consen    3 GEEWYDIYSRLLNERIIFLNGPIDEESANRLISQLLYLENEDKNKPINIYINSPG--------GDVDAGLAIYDAIRSSK   74 (182)
T ss_dssp             EEEEEEHHHHHHTTTEEEEESSBSHHHHHHHHHHHHHHHHHTSSSEEEEEEEECE--------BCHHHHHHHHHHHHHSS
T ss_pred             CcEEEeHHHHHhCCeEEEECCccCHHHHHHHHHHHHHHhccCCCceEEEEEcCCC--------CccHHHHHHHHHHHhcC
Confidence            4579999999999999999999999999999999999999999999999999999        99999999999999999


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHH
Q 025131          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVV  248 (257)
Q Consensus       170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI  248 (257)
                      .+|+|+|.|.|+|+|++|+++|++++|++.|||+||+|||+.+..|++.|++++++++++.++.+. +|+++||++.+.+
T Consensus        75 ~~v~t~~~G~aaSaa~~i~~ag~~~~R~~~~~s~~m~H~p~~~~~g~~~~l~~~~~~l~~~~~~~~~~~~~~tg~~~~~i  154 (182)
T PF00574_consen   75 APVTTVVLGLAASAATLIFLAGDKGKRYASPNSRFMIHQPSTGSGGNASELREQAKELEKLNERIANIYAERTGLSKEEI  154 (182)
T ss_dssp             SEEEEEEEEEEETHHHHHHHTSSTTTEEE-TT-EEEES-CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHH
T ss_pred             CCeEEEEeCccccceehhhhcCCcCceeeeecCEEEeecceeecccccchhHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988 9999999999999


Q ss_pred             HHHHhhc
Q 025131          249 SDLKKAQ  255 (257)
Q Consensus       249 ~~l~r~~  255 (257)
                      +++++.+
T Consensus       155 ~~~~~~~  161 (182)
T PF00574_consen  155 EELMDRD  161 (182)
T ss_dssp             HHHCSST
T ss_pred             HHHHhCC
Confidence            9877643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....

>cd07017 S14_ClpP_2 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=6.4e-40  Score=279.68  Aligned_cols=153  Identities=46%  Similarity=0.740  Sum_probs=148.2

Q ss_pred             chHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEE
Q 025131           95 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus        95 Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~T  174 (257)
                      ||+++||++|+|||+|+|+++++++++++|++++.+++.++|+|||||||        |++++|++|||.|++++.+|+|
T Consensus         1 ~~~~~l~~~r~i~i~g~I~~~~~~~i~~~l~~~~~~~~~~~i~l~inSpG--------G~v~~~~~i~~~l~~~~~~v~t   72 (171)
T cd07017           1 DIYSRLLKERIIFLGGPIDDEVANLIIAQLLYLESEDPKKPIYLYINSPG--------GSVTAGLAIYDTMQYIKPPVST   72 (171)
T ss_pred             ChhHhhhcCcEEEEcCEEcHHHHHHHHHHHHHHHccCCCCceEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEE
Confidence            79999999999999999999999999999999999888899999999999        9999999999999999999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHh
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKK  253 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r  253 (257)
                      +|.|+|+|+|++|+++|++|+|++.|||++|+|+|+++..|++.|++.+++++.++++.+. +|+++||++.+++.++++
T Consensus        73 ~~~g~aaS~~~~i~~~g~~~~r~~~~~a~~~~h~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~tg~~~~~i~~~~~  152 (171)
T cd07017          73 ICLGLAASMGALLLAAGTKGKRYALPNSRIMIHQPLGGAGGQASDIEIQAKEILRLRRRLNEILAKHTGQPLEKIEKDTD  152 (171)
T ss_pred             EEEeEehhHHHHHHHcCCCCCEEEccchHHHHcCCCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999988 999999999999998885


Q ss_pred             hc
Q 025131          254 AQ  255 (257)
Q Consensus       254 ~~  255 (257)
                      .+
T Consensus       153 ~~  154 (171)
T cd07017         153 RD  154 (171)
T ss_pred             CC
Confidence            44

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activ

>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=100.00  E-value=1.2e-37  Score=264.46  Aligned_cols=144  Identities=33%  Similarity=0.461  Sum_probs=139.7

Q ss_pred             cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhH
Q 025131          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGE  183 (257)
Q Consensus       104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~  183 (257)
                      |+|||+|+|++.+++.++++|++|+.+++.++|+|||||||        |++++|++|||+|++++.+|+|+|.|+|+|+
T Consensus         1 r~i~i~g~I~~~~~~~~~~~L~~l~~~~~~~~i~l~InSpG--------G~v~~~~~i~~~i~~~~~~v~~~~~g~aaS~   72 (162)
T cd07013           1 REIMLTGEVEDISANQFAAQLLFLGAVNPEKDIYLYINSPG--------GDVFAGMAIYDTIKFIKADVVTIIDGLAASM   72 (162)
T ss_pred             CEEEEccEECcHHHHHHHHHHHHHhcCCCCCCEEEEEECCC--------CcHHHHHHHHHHHHhcCCCceEEEEeehhhH
Confidence            89999999999999999999999999888999999999999        9999999999999999999999999999999


Q ss_pred             HHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          184 AALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       184 AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      |++|+++|++|+|+++||+++|||||+++..|++.|++++++++++.++.+. +|+++||++.++|+++++.+
T Consensus        73 ~~~i~~a~~~g~r~~~p~a~~~ih~~~~~~~g~~~d~~~~~~~l~~~~~~~~~~~a~~tg~~~~~i~~~~~~~  145 (162)
T cd07013          73 GSVIAMAGAKGKRFILPNAMMMIHQPWGGTLGDATDMRIYADLLLKVEGNLVSAYAHKTGQSEEELHADLERD  145 (162)
T ss_pred             HHHHHHcCCCCcEEEecCEEEEEccCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999999 99999999999999876654

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas

>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease

Probab=99.94  E-value=2e-25  Score=186.97  Aligned_cols=138  Identities=22%  Similarity=0.266  Sum_probs=129.4

Q ss_pred             EEEeCcccCh---hHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeeh
Q 025131          105 IVYLGMSFVP---SVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW  181 (257)
Q Consensus       105 IIfLgg~I~~---~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~Aa  181 (257)
                      -|||+|+|++   ..++.+.+.|.+++.+   ++|.|||||||        |++++|++|||.|+.++.||.|++.|.|+
T Consensus         2 ~i~~~g~I~~~~~~~~~~~~~~l~~~~~~---~~i~l~inspG--------G~~~~~~~i~~~i~~~~~pvi~~v~g~a~   70 (160)
T cd07016           2 EIYIYGDIGSDWGVTAKEFKDALDALGDD---SDITVRINSPG--------GDVFAGLAIYNALKRHKGKVTVKIDGLAA   70 (160)
T ss_pred             EEEEEeEeCCCcccCHHHHHHHHHhccCC---CCEEEEEECCC--------CCHHHHHHHHHHHHhcCCCEEEEEcchHH
Confidence            5899999999   7999999999888653   89999999999        99999999999999999999999999999


Q ss_pred             hHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      |+|++|+++|+  +|++.|+++||+|+|+++..|+..|+++..++++++++.+. .|.+++|++.+.++.++..+
T Consensus        71 s~g~~ia~a~d--~~~~~~~a~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~~~  143 (160)
T cd07016          71 SAASVIAMAGD--EVEMPPNAMLMIHNPSTGAAGNADDLRKAADLLDKIDESIANAYAEKTGLSEEEISALMDAE  143 (160)
T ss_pred             hHHHHHHhcCC--eEEECCCcEEEEECCccccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            99999999996  69999999999999999999999999999999999999988 99999999988888777654

Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a

>cd07015 Clp_protease_NfeD Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.87  E-value=2.2e-21  Score=167.52  Aligned_cols=135  Identities=13%  Similarity=0.137  Sum_probs=118.6

Q ss_pred             EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe---eeeh
Q 025131          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW  181 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~---G~Aa  181 (257)
                      .|-+.|.|++..+..+...|-.-. +++.+.|.|+|||||        |.++++.+|||+|++++.||.|+|.   |+|+
T Consensus         3 vi~i~G~I~~~~~~~l~~~l~~A~-~~~~~~i~l~inSPG--------G~v~~~~~I~~~i~~~~~pvv~~v~p~g~~Aa   73 (172)
T cd07015           3 VAQIKGQITSYTYDQFDRYITIAE-QDNAEAIIIELDTPG--------GRADAAGNIVQRIQQSKIPVIIYVYPPGASAA   73 (172)
T ss_pred             EEEEeeEECHhHHHHHHHHHHHHh-cCCCCeEEEEEECCC--------CCHHHHHHHHHHHHhcCcCEEEEEecCCCeeh
Confidence            467789999888777777665443 466899999999999        9999999999999999999999999   9999


Q ss_pred             hHHHHHHccCCCCCeeecCCcEEeeecCCcccccC-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 025131          182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ-----ATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~Gq-----AsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~r~~  255 (257)
                      |+|++|+++|+  +|+|.|+++++.|+|..+ .|+     +.|.+++++++.++|+    |++++|++.++++.+.++.
T Consensus        74 Sag~~I~~a~~--~i~m~p~s~iG~~~pi~~-~g~~~~~~~~~~ki~~~~~~~~r~----~A~~~Gr~~~~a~~~v~~~  145 (172)
T cd07015          74 SAGTYIALGSH--LIAMAPGTSIGACRPILG-YSQNGSIIEAPPKITNYFIAYIKS----LAQESGRNATIAEEFITKD  145 (172)
T ss_pred             hHHHHHHHhcC--ceEECCCCEEEEcccccc-CCCCCccccchHHHHHHHHHHHHH----HHHHHCcCHHHHHHHHHhh
Confidence            99999999996  499999999999999865 366     7788999999998888    9999999999999776654

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially cle

>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease

Probab=99.86  E-value=4.7e-21  Score=159.76  Aligned_cols=140  Identities=16%  Similarity=0.267  Sum_probs=128.2

Q ss_pred             EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      +|||.|+|++.+...+++.|..++.+++.+.|.|++||||        |++.++..|++.|+..+.||.+++.|.|+|+|
T Consensus         1 vi~i~g~I~~~~~~~l~~~l~~a~~d~~~~~ivl~~~s~G--------g~~~~~~~i~~~l~~~~kpvva~~~g~~~s~g   72 (161)
T cd00394           1 VIFINGVIEDVSADQLAAQIRFAEADNSVKAIVLEVNTPG--------GRVDAGMNIVDALQASRKPVIAYVGGQAASAG   72 (161)
T ss_pred             CEEEEeEEccchHHHHHHHHHHHHhCCCCceEEEEEECCC--------cCHHHHHHHHHHHHHhCCCEEEEECChhHHHH
Confidence            5899999999999999999999998877899999999999        99999999999999999999999999999999


Q ss_pred             HHHHccCCCCCeeecCCcEEeeecCCcccccC--HHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131          185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       185 slIlaaG~kgkR~alPnS~iMIHqP~~~~~Gq--AsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~  254 (257)
                      .+|+++|+  +|++.|++++++|+|+.+..|.  ..+.+...+.++.+.+.+. .+++++|.+.+++.+++..
T Consensus        73 ~~la~~~d--~~~~~~~a~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~r~~~~~~~~~~~~~  143 (161)
T cd00394          73 YYIATAAN--KIVMAPGTRVGSHGPIGGYGGNGNPTAQEADQRIILYFIARFISLVAENRGQTTEKLEEDIEK  143 (161)
T ss_pred             HHHHhCCC--EEEECCCCEEEEeeeEEecCCCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhcC
Confidence            99999995  7999999999999999876664  4788888889999999988 9999999999877766543

Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec

>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.79  E-value=3.6e-18  Score=147.59  Aligned_cols=137  Identities=12%  Similarity=0.146  Sum_probs=118.8

Q ss_pred             EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe---eeeh
Q 025131          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV---GNAW  181 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~---G~Aa  181 (257)
                      +|.|.|+|++..++.+..+|..++. ++.+.|.|+|||||        |+++++..||+.|+.++.||.+.|.   |.|+
T Consensus         3 vv~i~g~I~~~~~~~l~~~l~~a~~-~~~~~vvl~InSpG--------G~v~~~~~i~~~l~~~~kPvia~v~~~~G~Aa   73 (187)
T cd07020           3 VLEINGAITPATADYLERAIDQAEE-GGADALIIELDTPG--------GLLDSTREIVQAILASPVPVVVYVYPSGARAA   73 (187)
T ss_pred             EEEEeeEEChHHHHHHHHHHHHHHh-CCCCEEEEEEECCC--------CCHHHHHHHHHHHHhCCCCEEEEEecCCCCch
Confidence            5788999999999999999999885 44789999999999        9999999999999999999999998   9999


Q ss_pred             hHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 025131          182 GEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLK  252 (257)
Q Consensus       182 S~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~  252 (257)
                      |+|++|+++|+  +|++.|+++|++|+|..+..+...+...+.+.+..+...+..|.+++|++.+.++.|+
T Consensus        74 sgG~~iala~D--~iva~p~a~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~a~~~l  142 (187)
T cd07020          74 SAGTYILLAAH--IAAMAPGTNIGAAHPVAIGGGGGSDPVMEKKILNDAVAYIRSLAELRGRNAEWAEKAV  142 (187)
T ss_pred             hHHHHHHHhCC--ceeECCCCcEEeccccccCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            99999999995  6999999999999998554444445566677788887776699999999877776543

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c

>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease

Probab=99.70  E-value=4.2e-16  Score=134.95  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=114.3

Q ss_pred             EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      .|.+.|+|++..+..+...|-.... ++.+.|.|+|||||        |.++++..||+.|+..+.||.+++.|.|+|+|
T Consensus         3 vi~i~g~I~~~~~~~l~~~l~~a~~-~~~~~ivl~inspG--------G~v~~~~~I~~~l~~~~~pvva~V~g~AaSaG   73 (178)
T cd07021           3 VIPIEGEIDPGLAAFVERALKEAKE-EGADAVVLDIDTPG--------GRVDSALEIVDLILNSPIPTIAYVNDRAASAG   73 (178)
T ss_pred             EEEEeeEECHHHHHHHHHHHHHHHh-CCCCeEEEEEECcC--------CCHHHHHHHHHHHHhCCCCEEEEECCchHHHH
Confidence            4678899999888877777755544 34789999999999        99999999999999999999999999999999


Q ss_pred             HHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhhc
Q 025131          185 ALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       185 slIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~r~~  255 (257)
                      ++|++++  ++++|.|++.++.|+|.....+++.|    -|....++..+.-|++++|.+.+.++.|.+++
T Consensus        74 ~~ia~a~--d~i~m~p~a~iG~~~~v~~~~~~~~~----~K~~~~~~~~~~~~A~~~gr~~~~a~~mv~~~  138 (178)
T cd07021          74 ALIALAA--DEIYMAPGATIGAAEPIPGDGNGAAD----EKVQSYWRAKMRAAAEKKGRDPDIAEAMVDKD  138 (178)
T ss_pred             HHHHHhC--CeEEECCCCeEecCeeEcCCCccchh----HHHHHHHHHHHHHHHHHhCCCHHHHHHHhhhh
Confidence            9999999  46999999999999999765554322    23344455555589999999999999999876

Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall

>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=99.20  E-value=2.7e-10  Score=99.51  Aligned_cols=141  Identities=14%  Similarity=0.156  Sum_probs=111.9

Q ss_pred             EEEeCcccC---hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEEEEEee
Q 025131          105 IVYLGMSFV---PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVG  178 (257)
Q Consensus       105 IIfLgg~I~---~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~Tv~~G  178 (257)
                      +|++.|+|+   +.+...+..+|..+..++..+-|.|++||+|        |++..+..|++.++.++   .||.+++.|
T Consensus         4 vi~i~g~i~~~~~~~~~~l~~~l~~a~~d~~i~~ivl~~~s~G--------g~~~~~~~i~~~i~~~~~~~kpvia~v~g   75 (208)
T cd07023           4 VIDIEGTISDGGGIGADSLIEQLRKAREDDSVKAVVLRINSPG--------GSVVASEEIYREIRRLRKAKKPVVASMGD   75 (208)
T ss_pred             EEEEEEEEcCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEECCC--------CCHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence            688999998   7899999999999987777899999999999        99999999999987654   599999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEE------eee------------cCCccccc------------CHHHHHHHHHHHH
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTI------MIK------------QPIGRIEG------------QATDVEIARKEMK  228 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~i------MIH------------qP~~~~~G------------qAsDi~i~a~el~  228 (257)
                      .|+|.|..|+++++  +|++.|++.+      |.|            ++.....|            ..++-+..-+.++
T Consensus        76 ~~~s~g~~lA~aaD--~i~a~~~s~~g~iG~~~~~~~~~~~l~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~  153 (208)
T cd07023          76 VAASGGYYIAAAAD--KIVANPTTITGSIGVIGQGPNLEELLDKLGIERDTIKSGPGKDKGSPDRPLTEEERAILQALVD  153 (208)
T ss_pred             cchhHHHHHHhhCC--EEEECCCCeEEeCcEEEecCCHHHHHHhcCCceEEEecCCCccCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999995  6999999988      444            22211112            2234555555666


Q ss_pred             HHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          229 NVKAELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       229 ~~k~~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      .+.+.+. ..++.-|.+.+.+.++.+.+
T Consensus       154 ~~~~~f~~~Va~~R~~~~~~~~~~~~~~  181 (208)
T cd07023         154 DIYDQFVDVVAEGRGMSGERLDKLADGR  181 (208)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHhcCCc
Confidence            6667666 77888889998888876654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad

>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type

Probab=99.11  E-value=2.8e-09  Score=93.53  Aligned_cols=140  Identities=16%  Similarity=0.176  Sum_probs=105.8

Q ss_pred             EEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC--CCEEEEEeeeehh
Q 025131          105 IVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWG  182 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~--~~V~Tv~~G~AaS  182 (257)
                      +|.|.|+|+ .....+...|..+..++..+.|.|++||+|        |++..+..|++.|+.++  .||.+++.|.|+|
T Consensus         4 vi~i~g~i~-~s~~~l~~~l~~a~~d~~i~~vvl~~~s~G--------g~~~~~~~l~~~i~~~~~~kpvia~v~g~a~s   74 (207)
T TIGR00706         4 ILPVSGAIA-VSPEDFDKKIKRIKDDKSIKALLLRINSPG--------GTVVASEEIYEKLKKLKAKKPVVASMGGVAAS   74 (207)
T ss_pred             EEEEEEEEe-cCHHHHHHHHHHHhhCCCccEEEEEecCCC--------CCHHHHHHHHHHHHHhcCCCCEEEEECCccch
Confidence            678888997 456778888877776667789999999999        99999999999999998  8999999999999


Q ss_pred             HHHHHHccCCCCCeeecCCcEE------eeecCCcc------------ccc------------CHHHHHHHHHHHHHHHH
Q 025131          183 EAALLLGAGAKGNRAALPSSTI------MIKQPIGR------------IEG------------QATDVEIARKEMKNVKA  232 (257)
Q Consensus       183 ~AslIlaaG~kgkR~alPnS~i------MIHqP~~~------------~~G------------qAsDi~i~a~el~~~k~  232 (257)
                      .|..|+++++  +|++.|++.+      |-|+....            ..|            ...+-+..-+.++.+.+
T Consensus        75 ~g~~la~aaD--~i~a~p~a~vg~iGv~~~~~~~~~~l~k~Gv~~~~~~~g~~K~~~~~~~~~s~~~~e~~~~~l~~~~~  152 (207)
T TIGR00706        75 GGYYIAMAAD--EIVANPGTITGSIGVILQGANVEKLYEKLGIEFEVIKSGEYKDIGSPTRELTPEERDILQNLVNESYE  152 (207)
T ss_pred             HHHHHHhcCC--EEEECCCCeEEeeeEEEecCCHHHHHHhCCceEEEEEcCCCcCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999994  6999999875      33332111            011            12233333345555666


Q ss_pred             HHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          233 ELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       233 ~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      .+. ..++.-|.+.+.++++.+.+
T Consensus       153 ~f~~~va~~R~~~~~~~~~~~~~~  176 (207)
T TIGR00706       153 QFVQVVAKGRNLPVEDVKKFADGR  176 (207)
T ss_pred             HHHHHHHhcCCCCHHHHHHHhcCC
Confidence            655 66666689998888887654

The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.

>cd07014 S49_SppA Signal peptide peptidase A

Probab=98.93  E-value=2.4e-08  Score=85.28  Aligned_cols=122  Identities=17%  Similarity=0.104  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc---cCCCEEEEEeeeehhHHHHHHccCC
Q 025131          116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGA  192 (257)
Q Consensus       116 ~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~---i~~~V~Tv~~G~AaS~AslIlaaG~  192 (257)
                      +.+.+...|..++.++..+-|.|.+||+|        |++.....+++.++.   .+.||.+++.|.|+|.|..|+++++
T Consensus        23 ~~~~l~~~l~~a~~d~~v~~vvl~~~~~g--------g~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~la~a~D   94 (177)
T cd07014          23 SGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYWISTPAN   94 (177)
T ss_pred             CHHHHHHHHHHHhcCCCceEEEEEeeCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHHHHHhCC
Confidence            46778888888877666788999999999        988887777776654   4679999999999999999999995


Q ss_pred             CCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131          193 KGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       193 kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~  254 (257)
                        .|++.|++.|++|.++.+       .+..-..+..+.+.+. .+++..|.+.+.+.+++.+
T Consensus        95 --~i~a~~~a~~~~~G~~~~-------~~~~~~~l~~~~~~~~~~v~~~rg~~~~~~~~~l~~  148 (177)
T cd07014          95 --YIVANPSTLVGSIGIFGV-------QLADQLSIENGYKRFITLVADNRHSTPEQQIDKIAQ  148 (177)
T ss_pred             --EEEECCCCeEEEechHhh-------HHHHHHHHHHHHHHHHHHHHHhCCCCHHHhHHHhcC
Confidence              699999999999966554       1112235666666666 8899999999888877643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=98.87  E-value=4.9e-08  Score=98.32  Aligned_cols=141  Identities=15%  Similarity=0.097  Sum_probs=109.3

Q ss_pred             EEEeCcccChh-------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEEE
Q 025131          105 IVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFT  174 (257)
Q Consensus       105 IIfLgg~I~~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~T  174 (257)
                      +|++.|+|.+.       ..+.+..+|..+..++..+.|.|+|||||        |+++++-.|++.|+..+   .||.+
T Consensus       312 vI~~~G~I~~~~~~~~~~~~~~~~~~l~~a~~D~~VkaIVLrinSpG--------Gs~~ase~i~~~i~~~~~~gKPVva  383 (584)
T TIGR00705       312 IVHLEGPIADGRDTEGNTGGDTVAALLRVARSDPDIKAVVLRINSPG--------GSVFASEIIRRELARAQARGKPVIV  383 (584)
T ss_pred             EEEEEEEEcCCCCcccccCHHHHHHHHHHHhhCCCceEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCcEEE
Confidence            89999999742       24566666666665556799999999999        99999999999997553   68999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEE------eeecCC----------------------ccc-ccCHHHHHHHHH
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTI------MIKQPI----------------------GRI-EGQATDVEIARK  225 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~i------MIHqP~----------------------~~~-~GqAsDi~i~a~  225 (257)
                      .+.|+|+|.|-.|.++++  ++++.|++.+      +.+...                      ... .....+.++..+
T Consensus       384 ~~~g~aaSggY~iA~aaD--~I~a~p~t~~GSIGv~~~~~~~~~~l~klGi~~~~~~t~~~~~~s~~~~~t~~~~~~~~~  461 (584)
T TIGR00705       384 SMGAMAASGGYWIASAAD--YIVASPNTITGSIGVFSVLPTFENSLDRIGVHVDGVSTHELANVSLLRPLTAEDQAIMQL  461 (584)
T ss_pred             EECCccccHHHHHHHhCC--EEEECCCCeeecCEEEEEccCHHHHHHhcCCceEEEeccCcCCCCCCCCCCHHHHHHHHH
Confidence            999999999999999995  6999999987      555211                      001 124667777777


Q ss_pred             HHHHHHHHHH-HHHHhcCCCHHHHHHHHhhc
Q 025131          226 EMKNVKAELV-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       226 el~~~k~~l~-iY~erTg~~~evI~~l~r~~  255 (257)
                      .+++..+.+. ..++.-|++.+.++.+...+
T Consensus       462 ~l~~~y~~F~~~Va~~R~l~~e~v~~ia~Gr  492 (584)
T TIGR00705       462 SVEAGYRRFLSVVSAGRNLTPTQVDKVAQGR  492 (584)
T ss_pred             HHHHHHHHHHHHHHhhCCCCHHHHHHHHhCC
Confidence            8888888877 77777889999888876644

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>cd07022 S49_Sppa_36K_type Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.85  E-value=1e-07  Score=84.00  Aligned_cols=129  Identities=18%  Similarity=0.163  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC--CCEEEEEeeeehhHHHHHHccC
Q 025131          114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK--PPIFTLCVGNAWGEAALLLGAG  191 (257)
Q Consensus       114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~--~~V~Tv~~G~AaS~AslIlaaG  191 (257)
                      ......+++.|..++.++..+-|.|.+||+|        |++.....|++.|+.++  .||.+++.|.|+|.|..|++++
T Consensus        24 ~~~~~~l~~~l~~a~~d~~i~~Vvl~~~s~g--------g~~~~~~~l~~~l~~~~~~KpViA~v~g~a~s~gy~lA~~a   95 (214)
T cd07022          24 LTSYEGIAAAIRAALADPDVRAIVLDIDSPG--------GEVAGVFELADAIRAARAGKPIVAFVNGLAASAAYWIASAA   95 (214)
T ss_pred             cccHHHHHHHHHHHhhCCCCcEEEEEEeCCC--------CcHHHHHHHHHHHHHHhcCCCEEEEECCchhhHHHHHHhcC
Confidence            3567788999988887777889999999999        99999999999999887  8999999999999999999999


Q ss_pred             CCCCeeecCCcEE------eeecCCccc------------cc------------CHHHHHHHHHHHHHHHHHHH-HHHHh
Q 025131          192 AKGNRAALPSSTI------MIKQPIGRI------------EG------------QATDVEIARKEMKNVKAELV-LYTEK  240 (257)
Q Consensus       192 ~kgkR~alPnS~i------MIHqP~~~~------------~G------------qAsDi~i~a~el~~~k~~l~-iY~er  240 (257)
                      +  ++++.|++.+      +.|....+.            .|            +..+-+..-+.++.+.+.+. .+++.
T Consensus        96 D--~i~a~~~a~~g~iG~~~~~~~~~~ll~k~Gi~~~~~~~g~~K~~~~~~~~~s~~~re~~~~~l~~~~~~f~~~V~~~  173 (214)
T cd07022          96 D--RIVVTPTAGVGSIGVVASHVDQSKALEKAGLKVTLIFAGAHKVDGNPDEPLSDEARARLQAEVDALYAMFVAAVARN  173 (214)
T ss_pred             C--EEEEcCCCeEEeeeEEEecCCHHHHHHhCCCeEEEEEcCCCccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5  7999999985      333332111            11            22344444455666666666 88888


Q ss_pred             cCCCHHHHHHHH
Q 025131          241 SPEDHGVVSDLK  252 (257)
Q Consensus       241 Tg~~~evI~~l~  252 (257)
                      .|++.+++.++.
T Consensus       174 R~~~~~~~~~~~  185 (214)
T cd07022         174 RGLSAAAVRATE  185 (214)
T ss_pred             CCCCHHHHHHhh
Confidence            899988888764

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 36K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily are all bacterial and include sohB peptidase and protein C. These are sometimes referred to as 36K type since they contain only one domain, unlike E. coli SppA that also contains an amino-terminal domain. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases.

>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=98.74  E-value=2.7e-08  Score=93.22  Aligned_cols=79  Identities=20%  Similarity=0.101  Sum_probs=67.7

Q ss_pred             HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCC--EEEEEeeeehhHHHHHHccCCCC
Q 025131          117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPP--IFTLCVGNAWGEAALLLGAGAKG  194 (257)
Q Consensus       117 a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~--V~Tv~~G~AaS~AslIlaaG~kg  194 (257)
                      ...+.+.|-.+...++.+.|-|.|||||        |++.+..-||+.++.++.+  |+.++-++|||.|-+|.|+++  
T Consensus        82 ~~~~~~~l~~~~~~~~vk~vvL~inSPG--------G~v~as~~i~~~l~~l~~~~PV~v~v~~~AASGGY~IA~aAd--  151 (317)
T COG0616          82 GDDIEEILRAARADPSVKAVVLRINSPG--------GSVVASELIARALKRLRAKKPVVVSVGGYAASGGYYIALAAD--  151 (317)
T ss_pred             HHHHHHHHHHHhcCCCCceEEEEEECcC--------CchhHHHHHHHHHHHHhhcCCEEEEECCeecchhhhhhccCC--
Confidence            3445555555666677899999999999        9999999999999999874  999999999999999999995  


Q ss_pred             CeeecCCcEEe
Q 025131          195 NRAALPSSTIM  205 (257)
Q Consensus       195 kR~alPnS~iM  205 (257)
                      +.+|-|+|.+-
T Consensus       152 ~I~a~p~si~G  162 (317)
T COG0616         152 KIVADPSSITG  162 (317)
T ss_pred             EEEecCCceee
Confidence            68999998753

>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad

Probab=98.71  E-value=4e-07  Score=80.20  Aligned_cols=127  Identities=15%  Similarity=0.137  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhc---cCCCEEEEEeeeehhHHHHHHccCCC
Q 025131          117 TELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGY---VKPPIFTLCVGNAWGEAALLLGAGAK  193 (257)
Q Consensus       117 a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~---i~~~V~Tv~~G~AaS~AslIlaaG~k  193 (257)
                      ...+...|..+..++..+-|.|.+||+|        |++.+...+++.|+.   .+.||.+++.|.|+|.|..|++++  
T Consensus        23 ~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~~~~~l~~~~~~~kpVia~v~g~a~s~gy~la~~a--   92 (211)
T cd07019          23 GDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVVVSAGGAAASGGYWISTPA--   92 (211)
T ss_pred             HHHHHHHHHHHhhCCCceEEEEEEcCCC--------cCHHHHHHHHHHHHHHHhCCCCEEEEECCeehhHHHHHHHhC--
Confidence            4678888888877667799999999999        999998889887654   556999999999999999999999  


Q ss_pred             CCeeecCCcEEee------------------------ec-CCcccc-c---CHHHHHHHHHHHHHHHHHHH-HHHHhcCC
Q 025131          194 GNRAALPSSTIMI------------------------KQ-PIGRIE-G---QATDVEIARKEMKNVKAELV-LYTEKSPE  243 (257)
Q Consensus       194 gkR~alPnS~iMI------------------------Hq-P~~~~~-G---qAsDi~i~a~el~~~k~~l~-iY~erTg~  243 (257)
                      +++++.|++++..                        |. +..... .   .+++-+.....++++.+.+. ..++..++
T Consensus        93 D~i~a~~~a~~gsiGv~~~~~~~~~~l~k~Gv~~~~~~~~g~~k~~~~~~~s~e~r~~~~~~ld~~~~~f~~~Va~~R~~  172 (211)
T cd07019          93 NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLGLQLSIENGYKRFITLVADARHS  172 (211)
T ss_pred             CEEEEcCCCEEEEeEEEEEcCCHHHHHHhcCCceEEEEecCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            4699999988842                        21 110000 0   12233333356677777766 78888899


Q ss_pred             CHHHHHHHHh
Q 025131          244 DHGVVSDLKK  253 (257)
Q Consensus       244 ~~evI~~l~r  253 (257)
                      +.+.++.+.+
T Consensus       173 ~~~~l~~~~~  182 (211)
T cd07019         173 TPEQIDKIAQ  182 (211)
T ss_pred             CHHHHHHhcC
Confidence            9888877654

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te

>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily

Probab=98.50  E-value=1.1e-06  Score=81.54  Aligned_cols=89  Identities=18%  Similarity=0.132  Sum_probs=75.5

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL  188 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIl  188 (257)
                      ...|+.+.++.+...+-.   .++.++|.|.||+||        |.+.++..|.+.|+.++.+++.++-..|.|+|++|+
T Consensus        69 ~~~I~i~dse~v~raI~~---~~~~~~IdLii~TpG--------G~v~AA~~I~~~l~~~~~~v~v~VP~~A~SAGTlIA  137 (285)
T PF01972_consen   69 YRYIDIDDSEFVLRAIRE---APKDKPIDLIIHTPG--------GLVDAAEQIARALREHPAKVTVIVPHYAMSAGTLIA  137 (285)
T ss_pred             ceeEcHhhHHHHHHHHHh---cCCCCceEEEEECCC--------CcHHHHHHHHHHHHhCCCCEEEEECcccccHHHHHH
Confidence            345777778888777643   345678999999999        999999999999999999999999999999999999


Q ss_pred             ccCCCCCeeecCCcEEeeecCC
Q 025131          189 GAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       189 aaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ++++  +-+|.|+|.+-==.|.
T Consensus       138 LaAD--eIvM~p~a~LGpiDPq  157 (285)
T PF01972_consen  138 LAAD--EIVMGPGAVLGPIDPQ  157 (285)
T ss_pred             HhCC--eEEECCCCccCCCCcc
Confidence            9995  5689999988754454

The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane

>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad

Probab=98.12  E-value=6.4e-05  Score=66.71  Aligned_cols=89  Identities=13%  Similarity=0.045  Sum_probs=74.5

Q ss_pred             cccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc---CCCEEEEEeeeehhHHHH
Q 025131          110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       110 g~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i---~~~V~Tv~~G~AaS~Asl  186 (257)
                      ...+......++.+|..+..++..+-|.|.|||||        |.+.+.-.|++.|+..   +.||.++..| |+|.|-.
T Consensus        24 ~~~~~~~~~~l~~~l~~a~~d~~ik~vvL~~~s~g--------g~~~~~~el~~~i~~~~~~~kpVia~~~~-~~sggy~   94 (222)
T cd07018          24 GESSELSLRDLLEALEKAAEDDRIKGIVLDLDGLS--------GGLAKLEELRQALERFRASGKPVIAYADG-YSQGQYY   94 (222)
T ss_pred             CCcCCccHHHHHHHHHHHhcCCCeEEEEEECCCCC--------CCHHHHHHHHHHHHHHHHhCCeEEEEeCC-CCchhhh
Confidence            34455667889999988887767899999999999        9999999999999755   4689888887 8888888


Q ss_pred             HHccCCCCCeeecCCcEEeeecC
Q 025131          187 LLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       187 IlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      |.++++  +.++.|++.+.+.-.
T Consensus        95 lasaad--~I~a~p~~~vg~iGv  115 (222)
T cd07018          95 LASAAD--EIYLNPSGSVELTGL  115 (222)
T ss_pred             hhhhCC--EEEECCCceEEeecc
Confidence            988884  789999999998643

Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys

>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00015  Score=71.16  Aligned_cols=97  Identities=15%  Similarity=0.198  Sum_probs=82.3

Q ss_pred             cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEee---ee
Q 025131          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVG---NA  180 (257)
Q Consensus       104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G---~A  180 (257)
                      .++.+.++|++.+++.+...|..-+. +....+-|.+|+||        |-+++...|...+...+.||..++.=   .|
T Consensus        29 ~vi~i~g~I~~~s~~~l~r~l~~A~~-~~a~~vvl~ldTPG--------Gl~~sm~~iv~~i~~s~vPV~~yv~p~ga~A   99 (436)
T COG1030          29 YVIEIDGAIDPASADYLQRALQSAEE-ENAAAVVLELDTPG--------GLLDSMRQIVRAILNSPVPVIGYVVPDGARA   99 (436)
T ss_pred             EEEEecCccCHHHHHHHHHHHHHHHh-CCCcEEEEEecCCC--------chHHHHHHHHHHHHcCCCCEEEEEcCCCcch
Confidence            46778999999999999888765443 34578999999999        99999999999999999998777653   69


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~~  211 (257)
                      +|+|++|+++.+.  =+|.|++.+-=-+|-.
T Consensus       100 aSAGtyI~m~~hi--aaMAPgT~iGaa~Pi~  128 (436)
T COG1030         100 ASAGTYILMATHI--AAMAPGTNIGAATPIA  128 (436)
T ss_pred             hchhhHHHHhcCh--hhhCCCCcccccceec
Confidence            9999999999964  5888999988888864

>PRK11778 putative inner membrane peptidase; Provisional

Probab=97.90  E-value=5.2e-05  Score=72.08  Aligned_cols=91  Identities=12%  Similarity=0.033  Sum_probs=62.4

Q ss_pred             EEEeCcccChhHHHHHHHHHHhc-hhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHH---HHHhccCCCEEEEEeeee
Q 025131          105 IVYLGMSFVPSVTELILAEFLYL-QYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY---DVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       105 IIfLgg~I~~~~a~~iiaqLl~L-~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIy---D~m~~i~~~V~Tv~~G~A  180 (257)
                      +|.+.|+|+......+..++..+ ....+.+.|.|.|||||        |+++..--++   ..++..+.||++.+.++|
T Consensus        94 VI~~~G~I~~~~~~~l~e~i~a~l~~A~~~~aVvLridSpG--------G~v~~s~~a~~~l~~lr~~~kpVva~v~~~A  165 (330)
T PRK11778         94 VLDFKGDIDASEVESLREEITAILAVAKPGDEVLLRLESPG--------GVVHGYGLAASQLQRLRDAGIPLTVAVDKVA  165 (330)
T ss_pred             EEEEEEEECCCcchhhHHHHHHHHHhccCCCeEEEEEeCCC--------CchhHHHHHHHHHHHHHhcCCCEEEEECCch
Confidence            45566888765443332222221 22223367999999999        9987633333   344555579999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEe
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIM  205 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iM  205 (257)
                      +|.|=+|.|+++  +-++.|.+.+-
T Consensus       166 ASggY~iAsaAD--~I~A~P~a~vG  188 (330)
T PRK11778        166 ASGGYMMACVAD--KIIAAPFAIVG  188 (330)
T ss_pred             hhHHHHHHHhCC--EEEECCCCeEE
Confidence            999999999994  67999998876

>PRK10949 protease 4; Provisional

Probab=97.82  E-value=0.00042  Score=70.80  Aligned_cols=141  Identities=13%  Similarity=0.144  Sum_probs=97.3

Q ss_pred             cEEEeCcccChh-------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccC---CCEE
Q 025131          104 RIVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVK---PPIF  173 (257)
Q Consensus       104 RIIfLgg~I~~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~  173 (257)
                      -+|++.|.|.+.       ..+.++.+|.....++..+-|.|.|||||        |++.+.-.|++.|+..+   .||.
T Consensus       329 avi~~~G~I~~g~~~~g~~~~~~~~~~l~~a~~D~~vkaVvLrInSpG--------Gs~~ase~i~~~i~~~r~~gKPVv  400 (618)
T PRK10949        329 AVIFANGAIMDGEETPGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVV  400 (618)
T ss_pred             EEEEEEEEEcCCCCcCCCcCHHHHHHHHHHHHhCCCCcEEEEEecCCC--------CcHHHHHHHHHHHHHHHhcCCcEE
Confidence            357777877542       24567888877777778899999999999        99999999999997553   5899


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEE------eeecCCcc------------ccc-----------CHHHHHHHH
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTI------MIKQPIGR------------IEG-----------QATDVEIAR  224 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~i------MIHqP~~~------------~~G-----------qAsDi~i~a  224 (257)
                      +...++|||.|=.|.++++  +-++.|.+.+      +.|.-..+            ..|           ..++-+..-
T Consensus       401 as~~~~aASggY~iA~aad--~I~a~p~t~tGSIGV~~~~~~~~~ll~klGV~~~~~~~~~~~~~~~~~~~s~e~~~~~q  478 (618)
T PRK10949        401 VSMGGMAASGGYWISTPAN--YIVASPSTLTGSIGIFGVINTVENSLDSIGVHTDGVSTSPLADVSITKALPPEFQQMMQ  478 (618)
T ss_pred             EEECCCCccHHHHHHHhcC--EEEECCCCceeeCcEEEEccCHHHHHHhcCCceeEEeccccCCccccCCCCHHHHHHHH
Confidence            8888999999999999995  5788896653      33321100            001           122333333


Q ss_pred             HHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131          225 KEMKNVKAELV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       225 ~el~~~k~~l~-iY~erTg~~~evI~~l~r~  254 (257)
                      ..++...+.+. .-++.-+++.++++++-+.
T Consensus       479 ~~ld~~y~~F~~~Va~~R~~~~~~v~~ia~G  509 (618)
T PRK10949        479 LSIENGYKRFITLVADSRHKTPEQIDKIAQG  509 (618)
T ss_pred             HHHHHHHHHHHHHHHhhCCCCHHHHHHHhcC
Confidence            44555555555 5555567888888776543

>COG3904 Predicted periplasmic protein [Function unknown]

Probab=96.02  E-value=0.046  Score=49.67  Aligned_cols=99  Identities=13%  Similarity=0.003  Sum_probs=74.2

Q ss_pred             ccCcE--EEeCcccChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEEe
Q 025131          101 YKNRI--VYLGMSFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       101 l~~RI--IfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++-|.  |-+.+++-+.-+....+.|..  + ....-+. +-+||||        |+|.++++.=-.++..+.++..--.
T Consensus        72 ~dgr~l~VvVse~~a~~da~sal~~lir--~-~G~y~~t~v~lnSpG--------Gsv~kA~~mgkLiRe~gfdt~v~s~  140 (245)
T COG3904          72 LDGRQLPVVVSEPGANVDAASALGRLIR--K-AGLYIATGVTLNSPG--------GSVAKACSMGKLIREDGFDTAVDSG  140 (245)
T ss_pred             ccCceeeEEEcCCCCCccHHHHHHHHHh--c-cCceeEEEEEecCCC--------CcHHHHHhhhhhhhhcccCccccch
Confidence            44444  445666655444445555532  1 2233344 7899999        9999999999999999888877778


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+|+|.-.+++++|  ..|++-+.+.|-+||+...
T Consensus       141 A~CasaCpl~fagG--vrRvve~~ayiGVHq~~~~  173 (245)
T COG3904         141 AMCASACPLMFAGG--VRRVVEDFAYIGVHQITTT  173 (245)
T ss_pred             hhhhccchhhhhcc--eeeeecccceeeeeecccc
Confidence            88999989999999  5789999999999999854

>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit

Probab=96.01  E-value=0.037  Score=52.66  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=75.1

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHH---hccCCCEEEEE
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLC  176 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m---~~i~~~V~Tv~  176 (257)
                      ++|+-..+|.++++....... |..|.... .-||--+||+||.-.+  -|..|.   +-+|...+   -..+.|+.+++
T Consensus       122 ~e~~~~~~G~~~p~g~rKa~R-~m~lA~~f-~iPvVtlvDTpGa~~g~~aE~~G~---~~aia~~l~a~s~~~VP~IsVV  196 (316)
T TIGR00513       122 KEKLRRNFGMPAPEGYRKALR-LMKMAERF-KMPIITFIDTPGAYPGIGAEERGQ---SEAIARNLREMARLGVPVICTV  196 (316)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCCCCCHHHHHHHH---HHHHHHHHHHHHcCCCCEEEEE
Confidence            566667778888866555544 33343332 5799999999993211  111122   23444444   56678999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc---ccCH
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI---EGQA  217 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~---~GqA  217 (257)
                      +|-++|.|++.++.+  +..+|+||+.+.+=.|.+.+   +.++
T Consensus       197 iGeggsGGAla~~~a--D~v~m~~~a~~sVisPEg~a~Il~kd~  238 (316)
T TIGR00513       197 IGEGGSGGALAIGVG--DKVNMLEYSTYSVISPEGCAAILWKDA  238 (316)
T ss_pred             ecccccHHHhhhccC--CEEEEecCceEEecCHHHHHHHhccch
Confidence            999999999887767  46899999999999998653   5554

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated

Probab=95.78  E-value=0.076  Score=50.62  Aligned_cols=108  Identities=23%  Similarity=0.250  Sum_probs=74.6

Q ss_pred             ccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEee
Q 025131          101 YKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       101 l~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      .++++-..+|-++++....... |..+... -.-||--.|++||--.+  -|.-|...++......|-..+.|+.++++|
T Consensus       121 ~~e~~~~~~G~~~peg~rKa~R-~m~lA~~-f~lPIVtlvDTpGa~~G~~aE~~G~~~aia~~l~~~a~~~VP~IsVIiG  198 (319)
T PRK05724        121 TKEKIRRNFGMPRPEGYRKALR-LMKMAEK-FGLPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLKVPIICTVIG  198 (319)
T ss_pred             ccccccccCCCCCHHHHHHHHH-HHHHHHH-cCCCEEEEEeCCCCCCCHHHHhccHHHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4677777788888876555544 3333322 25799999999993321  111122222233344455777899999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -++|.|++.++.+  +..+|+|+|.+.+=.|.+.
T Consensus       199 eg~sGGAla~~~a--D~v~m~~~A~~svisPEg~  230 (319)
T PRK05724        199 EGGSGGALAIGVG--DRVLMLEYSTYSVISPEGC  230 (319)
T ss_pred             CccHHHHHHHhcc--CeeeeecCceEeecCHHHH
Confidence            9999999888877  4689999999999988765

>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily

Probab=95.77  E-value=0.059  Score=45.59  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=67.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCC--------------cccHhhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEK--------------LGYETEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~--------------~G~v~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++.+.+...|..++.++..+  .+.|.+.|... .|--              ...+.....++..+...+.||.+.+
T Consensus        23 ~~~~~~~~l~~~l~~~~~d~~~~--~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v  100 (195)
T cd06558          23 LSLEMLDELAAALDEAEADPDVR--VVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV  100 (195)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            46778888888888776533333  23333333211 1110              0123344667777788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI  213 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~  213 (257)
                      -|.|.+.|+.+++++  +.|++.++++|.+..+..|.
T Consensus       101 ~G~a~g~G~~la~~~--D~~i~~~~~~~~~pe~~~G~  135 (195)
T cd06558         101 NGAALGGGLELALAC--DIRIAAEDAKFGLPEVKLGL  135 (195)
T ss_pred             CCeeecHHHHHHHhC--CEEEecCCCEEechhhhcCC
Confidence            999999999999998  57999999999988776543

This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.

>TIGR03134 malonate_gamma malonate decarboxylase, gamma subunit

Probab=95.72  E-value=0.1  Score=47.63  Aligned_cols=97  Identities=19%  Similarity=0.242  Sum_probs=66.0

Q ss_pred             CCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHh---ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          132 VEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG---YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       132 ~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~---~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      ...||-..+++||.-.  .-|..|-.-++-.+.+++.   ..+.|+.++++|.++|.|.+-+..+. +..+|+|++.+-.
T Consensus        65 f~~PIv~lvDtpG~~~g~~aE~~G~~~a~A~l~~a~a~a~~~~vP~IsvI~g~a~ggg~lamg~~a-d~v~Alp~A~i~v  143 (238)
T TIGR03134        65 DKRPIVVLVDTPSQAYGRREELLGINQALAHLAKALALARLAGHPVIGLIYGKAISGAFLAHGLQA-DRIIALPGAMVHV  143 (238)
T ss_pred             CCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCccHHHHHHHccCc-CeEEEcCCcEEEe
Confidence            5789999999999553  2444455555543444444   55599999999999998877765333 5789999999988


Q ss_pred             ecCCccc---ccCHHHHHHHHHHHHH
Q 025131          207 KQPIGRI---EGQATDVEIARKEMKN  229 (257)
Q Consensus       207 HqP~~~~---~GqAsDi~i~a~el~~  229 (257)
                      =.|.+.+   +-+.++.+..++++..
T Consensus       144 m~~e~aa~I~~~~~~~~~e~a~~~~~  169 (238)
T TIGR03134       144 MDLESMARVTKRSVEELEALAKSSPV  169 (238)
T ss_pred             cCHHHHHHHHccCHhHHHHHHHhhhh
Confidence            7776542   4455555554444433

Members of this protein family are the gamma subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.

>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional

Probab=95.42  E-value=0.1  Score=49.74  Aligned_cols=102  Identities=20%  Similarity=0.174  Sum_probs=71.3

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh----hHHHHHHH---HhccCCCEEE
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET----EAFAIYDV---MGYVKPPIFT  174 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~----aGlAIyD~---m~~i~~~V~T  174 (257)
                      ++|+-..+|-++++....... +..|.... .-||--+|++||.-.     |..-    .+-+|...   |-..+.|+.+
T Consensus       125 ~e~~~~~~G~~~p~g~rKa~R-lm~lA~~f-~lPIItlvDTpGA~~-----G~~AE~~G~~~aiar~l~~~a~~~VP~Is  197 (322)
T CHL00198        125 KENVLRNFGMPSPGGYRKALR-LMKHANKF-GLPILTFIDTPGAWA-----GVKAEKLGQGEAIAVNLREMFSFEVPIIC  197 (322)
T ss_pred             hhhhhhcCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEeCCCcCc-----CHHHHHHhHHHHHHHHHHHHHcCCCCEEE
Confidence            555545566687776655544 33333322 579999999999322     2211    12355544   4567789999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +++|-++|.|++.++.+  +..+|++||.+.+=.|.+.
T Consensus       198 VViGeggsGGAlal~~a--D~V~m~e~a~~sVisPEg~  233 (322)
T CHL00198        198 TIIGEGGSGGALGIGIG--DSIMMLEYAVYTVATPEAC  233 (322)
T ss_pred             EEeCcccHHHHHhhhcC--CeEEEeCCeEEEecCHHHH
Confidence            99999999999888877  5689999999999999765

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=95.25  E-value=0.095  Score=54.85  Aligned_cols=104  Identities=22%  Similarity=0.285  Sum_probs=70.5

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHh---ccCCCEEEEE
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMG---YVKPPIFTLC  176 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~---~i~~~V~Tv~  176 (257)
                      ++|+-..+|-.+++....... |..+.... .-||--+|++||.-.  .-|..|.   +-+|...+.   ....|+.+++
T Consensus       213 ke~~~rnfG~~~peGyRKAlR-lmkLAekf-gLPIVtLVDTpGA~pG~~AEe~Gq---~~aIArnl~amasl~VP~ISVV  287 (762)
T PLN03229        213 KENIMRNFGMPTPHGYRKALR-MMYYADHH-GFPIVTFIDTPGAYADLKSEELGQ---GEAIAHNLRTMFGLKVPIVSIV  287 (762)
T ss_pred             cccccccCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCCCchhHHHhH---HHHHHHHHHHHhCCCCCEEEEE
Confidence            455555666666665544443 33333222 579999999999322  1122222   334544444   6678999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +|-++|.|++.++.+  +..+|+|+|.+.+=-|.+.
T Consensus       288 iGeggSGGAlA~g~a--D~VlMle~A~~sVisPEga  321 (762)
T PLN03229        288 IGEGGSGGALAIGCA--NKLLMLENAVFYVASPEAC  321 (762)
T ss_pred             eCCcchHHHHHhhcC--CEEEEecCCeEEecCHHHH
Confidence            999999999998888  4689999999998888755

>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional

Probab=94.96  E-value=0.22  Score=46.03  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=72.2

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh--h--HHHHHHH---HhccCCCEEE
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET--E--AFAIYDV---MGYVKPPIFT  174 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~--a--GlAIyD~---m~~i~~~V~T  174 (257)
                      ++++...+|-++++-...... +..|..+. .-||--.+||||.-.     |...  .  +-+|...   |-..+.|+.+
T Consensus        69 ~d~~~~~~G~~~~~g~rKa~R-~~~lA~~~-~lPvV~lvDtpGa~~-----g~~aE~~G~~~~ia~~~~~~s~~~VP~Is  141 (256)
T PRK12319         69 QDNLKRNFGQPHPEGYRKALR-LMKQAEKF-GRPVVTFINTAGAYP-----GVGAEERGQGEAIARNLMEMSDLKVPIIA  141 (256)
T ss_pred             ccceeeeCCCCCHHHHHHHHH-HHHHHHHc-CCCEEEEEECCCcCC-----CHhHHhccHHHHHHHHHHHHhCCCCCEEE
Confidence            566666788888876555444 44444333 579999999999322     2211  1  2344444   3455789999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +++|-++|.|++.++.+  +..+|.|++.+.+=.|.+.
T Consensus       142 VI~G~~~gGgA~a~~~~--D~v~m~~~a~~~v~~pe~~  177 (256)
T PRK12319        142 IIIGEGGSGGALALAVA--DQVWMLENTMYAVLSPEGF  177 (256)
T ss_pred             EEeCCcCcHHHHHhhcC--CEEEEecCceEEEcCHHHH
Confidence            99999999999998877  4689999999999988754

>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional

Probab=94.65  E-value=0.16  Score=50.11  Aligned_cols=103  Identities=19%  Similarity=0.225  Sum_probs=68.4

Q ss_pred             CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHH---hccCCCEEEEEe
Q 025131          103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVM---GYVKPPIFTLCV  177 (257)
Q Consensus       103 ~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m---~~i~~~V~Tv~~  177 (257)
                      +++--..|-++++.......- +.|... -.-||--+||+||.-.+  -|.-|   .+-+|...+   -..+.|+.++++
T Consensus       193 e~~~rnfG~~~peGyRKAlR~-mklAek-f~lPIVtLVDTpGA~pG~~AEe~G---qa~aIAr~l~ams~l~VPiISVVi  267 (431)
T PLN03230        193 ENIYRNFAMPQPNGYRKALRF-MRHAEK-FGFPILTFVDTPGAYAGIKAEELG---QGEAIAFNLREMFGLRVPIIATVI  267 (431)
T ss_pred             cccccCCCCCCHHHHHHHHHH-HHHHHH-cCCCEEEEEeCCCcCCCHHHHHHh---HHHHHHHHHHHHhcCCCCEEEEEe
Confidence            333333466777665554443 333322 25799999999993211  01112   123454444   466789999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |-++|.|++.+++|+  ..+|+|||.+.+=.|.+.
T Consensus       268 GeGgSGGAlalg~aD--~VlMle~A~ysVisPEga  300 (431)
T PLN03230        268 GEGGSGGALAIGCGN--RMLMMENAVYYVASPEAC  300 (431)
T ss_pred             CCCCcHHHHHhhcCC--EEEEecCCEEEecCHHHH
Confidence            999999999998884  689999999999888654

>PRK06688 enoyl-CoA hydratase; Provisional

Probab=93.83  E-value=0.57  Score=42.07  Aligned_cols=96  Identities=10%  Similarity=0.059  Sum_probs=65.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcc-----------cHhhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLG-----------YETEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G-----------~v~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+.+.|..++.++   ++. |.|.+.|... .|-.+.           .......+++.|..++.||...+-|
T Consensus        29 l~~~~~~~l~~~l~~~~~d~---~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp~Iaav~G  105 (259)
T PRK06688         29 LTAAMYQALADALEAAATDP---AVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKPVVAAVNG  105 (259)
T ss_pred             CCHHHHHHHHHHHHHHhcCC---CceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCCEEEEECC
Confidence            67888888888888776432   233 3344444221 111111           1122345777888899999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       106 ~a~GgG~~lal~c--D~ria~~~a~f~~pe~~~G  137 (259)
T PRK06688        106 PAVGVGVSLALAC--DLVYASESAKFSLPFAKLG  137 (259)
T ss_pred             eeecHHHHHHHhC--CEEEecCCCEecCchhhcC
Confidence            9999999999999  4799999999887654433

>PRK08258 enoyl-CoA hydratase; Provisional

Probab=92.61  E-value=1.2  Score=40.72  Aligned_cols=96  Identities=17%  Similarity=0.114  Sum_probs=65.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++..++.+.|..++.+   .++. |.|.+.|... .|-.+..+                .....+++.|..++.||.
T Consensus        41 l~~~~~~eL~~~l~~~~~d---~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  117 (277)
T PRK08258         41 LTFESYAELRDLFRELVYA---DDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMRACPQPII  117 (277)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6777788888887766642   3343 4444555221 11111111                001246777888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|.+.....|
T Consensus       118 AaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G  154 (277)
T PRK08258        118 AAVDGVCAGAGAILAMAS--DLRLGTPSAKTAFLFTRVG  154 (277)
T ss_pred             EEECCeeehHHHHHHHhC--CEEEecCCCEEeccccccC
Confidence            999999999999999999  5799999999988766544

>PRK06072 enoyl-CoA hydratase; Provisional

Probab=92.49  E-value=1.2  Score=39.94  Aligned_cols=94  Identities=10%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEE-EEcCCCCCC-CCCCcccH--------hh-HHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~L-yINSpG~~~-~~~~~G~v--------~a-GlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++.+.+.+.|..++.+   +++.+ .|.+.|... .|-.+..+        .. ...++..|...+.||...+-|.|
T Consensus        24 l~~~~~~~l~~a~~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (248)
T PRK06072         24 LNLEMRNEFISKLKQINAD---PKIRVVIVTGEGRAFCVGADLSEFAPDFAIDLRETFYPIIREIRFSDKIYISAINGVT  100 (248)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhhhHHHHHHHHHHHHHHHHhCCCCEEEEECCee
Confidence            6778888888888777643   34543 334444221 12111111        01 12355667788899999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+.|.-|++++  +-|++.++++|-+....
T Consensus       101 ~GgG~~lal~c--D~~ia~~~a~f~~~~~~  128 (248)
T PRK06072        101 AGACIGIALST--DFKFASRDVKFVTAFQR  128 (248)
T ss_pred             ehHHHHHHHhC--CEEEEcCCCEEecchhh
Confidence            99999999998  47999999998765554

>PRK05869 enoyl-CoA hydratase; Validated

Probab=92.48  E-value=1.3  Score=39.33  Aligned_cols=97  Identities=14%  Similarity=0.066  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH-----------hhH-HHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------TEA-FAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v-----------~aG-lAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+...|..++.++..+  -+.|.+.|... .|-.+..+           ... ..+++.|..++.||.+.+-|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~vr--~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  108 (222)
T PRK05869         31 LTRQVYREIVAAANELGRRDDVA--AVILYGGHEIFSAGDDMPELRTLSAQEADTAARVRQQAVDAVAAIPKPTVAAITG  108 (222)
T ss_pred             CCHHHHHHHHHHHHHHhcCCCce--EEEEECCCCCcCcCcCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEEcC
Confidence            67778888888888777533222  23445545221 11111111           111 34677788889999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .|.+.|..|++++  +.|++.++++|-+....-|
T Consensus       109 ~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  140 (222)
T PRK05869        109 YALGAGLTLALAA--DWRVSGDNVKFGATEILAG  140 (222)
T ss_pred             EeecHHHHHHHhC--CEEEecCCCEEcCchhccC
Confidence            9999999999999  5799999998877554433

>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix

Probab=92.37  E-value=0.56  Score=41.62  Aligned_cols=95  Identities=15%  Similarity=0.081  Sum_probs=67.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+...|..++.++..+  -+.|.+.|... .|-.+..+            .....++..|..++.||.+.+-|
T Consensus        22 l~~~~~~~l~~~l~~~~~d~~v~--vvv~~~~~~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kp~Iaav~G   99 (245)
T PF00378_consen   22 LNPEMLDELEEALDEAEADPDVK--VVVISGGGKAFCAGADLKEFLNSDEEEAREFFRRFQELLSRLANFPKPTIAAVNG   99 (245)
T ss_dssp             BSHHHHHHHHHHHHHHHHSTTES--EEEEEESTSESBESB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEESS
T ss_pred             CCHHHHHHHHHHHHHHHhcCCcc--EEEEeecccccccccchhhhhccccccccccchhhccccccchhhhhheeecccc
Confidence            67788889999888887654333  45555555221 12221111            33466788888999999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .|.+.|+.+++++  +-|++.+++.|-+....
T Consensus       100 ~a~GgG~~lala~--D~~ia~~~a~f~~pe~~  129 (245)
T PF00378_consen  100 HAVGGGFELALAC--DFRIAAEDAKFGFPEVR  129 (245)
T ss_dssp             EEETHHHHHHHHS--SEEEEETTTEEETGGGG
T ss_pred             ccccccccccccc--ceEEeecccceeeeecc
Confidence            9999999999999  57999999996654443

Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....

>TIGR00705 SppA_67K signal peptide peptidase SppA, 67K type

Probab=92.35  E-value=3  Score=42.64  Aligned_cols=83  Identities=8%  Similarity=0.029  Sum_probs=61.9

Q ss_pred             hhHHHHHHHHHHhchhcCCCCceEEEEcC-CCCCCCCCCcccHhhHHHHHHHHhccC---CCEEEEEeeeehhHHHHHHc
Q 025131          114 PSVTELILAEFLYLQYEDVEKPIYLYINS-TGTTKGGEKLGYETEAFAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG  189 (257)
Q Consensus       114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINS-pG~~~~~~~~G~v~aGlAIyD~m~~i~---~~V~Tv~~G~AaS~AslIla  189 (257)
                      +.....++.+|.....++..+-|.|.||+ ||        |.+...-.|++.|+..+   .||..+..+. +|.+=+|.+
T Consensus        75 ~~~l~~i~~~i~~A~~D~~IkgIvL~i~~~~g--------~~~~~~~ei~~ai~~fk~sgKpVvA~~~~~-~s~~YylAs  145 (584)
T TIGR00705        75 AISLFDIVNAIRQAADDRRIEGLVFDLSNFSG--------WDSPHLVEIGSALSEFKDSGKPVYAYGTNY-SQGQYYLAS  145 (584)
T ss_pred             CcCHHHHHHHHHHHhcCCCceEEEEEccCCCC--------CCHHHHHHHHHHHHHHHhcCCeEEEEEccc-cchhhhhhh
Confidence            34667899999888887788999999996 56        67777778999998664   5788776543 344444444


Q ss_pred             cCCCCCeeecCCcEEeee
Q 025131          190 AGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       190 aG~kgkR~alPnS~iMIH  207 (257)
                      ++  ++-++.|.+.+.++
T Consensus       146 ~A--D~I~~~p~G~v~~~  161 (584)
T TIGR00705       146 FA--DEIILNPMGSVDLH  161 (584)
T ss_pred             hC--CEEEECCCceEEee
Confidence            45  46899999999764

E. coli SohB, which is most closely homologous to the C-terminal duplication of SppA, is predicted to perform a similar function of small peptide degradation, but in the periplasm. Many prokaryotes have a single SppA/SohB homolog that may perform the function of either or both.

>PRK07511 enoyl-CoA hydratase; Provisional

Probab=92.20  E-value=1.3  Score=39.87  Aligned_cols=94  Identities=13%  Similarity=0.082  Sum_probs=63.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc---------------HhhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY---------------ETEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~---------------v~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++..++.+.|..++.+   +++. |.|.+.|... .|-.+..               ......++..|...+.||..
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIA  103 (260)
T PRK07511         27 LHPDMYAAGIEALNTAERD---PSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIRAFPKPVIA  103 (260)
T ss_pred             CCHHHHHHHHHHHHHhccC---CCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            6777888888887776543   3343 4445555221 1111111               11123466778888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+.|.|.+.|..|++++  +-|++.++++|-+..-.
T Consensus       104 av~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~  137 (260)
T PRK07511        104 AVEGAAAGAGFSLALAC--DLLVAARDAKFVMAYVK  137 (260)
T ss_pred             EECCeeehHHHHHHHhC--CEEEeeCCCEEeccccc
Confidence            99999999999999999  57999999988875544

>PRK06210 enoyl-CoA hydratase; Provisional

Probab=91.96  E-value=1.2  Score=40.38  Aligned_cols=94  Identities=12%  Similarity=0.141  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh----------------------hHHHHHHHHhc
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET----------------------EAFAIYDVMGY  167 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~----------------------aGlAIyD~m~~  167 (257)
                      ++.++...+.+.|..++.+   +++. |.|-+.|... .|-.+..+.                      .....++.|..
T Consensus        30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  106 (272)
T PRK06210         30 WTPVMEAEVYAAMDRAEAD---PAVRVIVLTGAGRGFCAGADMGELQTIDPSDGRRDTDVRPFVGNRRPDYQTRYHFLTA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHhccC---CCeeEEEEECCCCCcccccCHHHHhccCcccccccccchhhhhhhhhhHHHHHHHHHh
Confidence            6778888888888777642   2343 4444545221 121111110                      01234567888


Q ss_pred             cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       168 i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ++.||.+.+-|.|.+.|.-|++++  +-|++.++++|-+..+.
T Consensus       107 ~~kPvIaav~G~a~GgG~~lala~--D~~ia~~~a~f~~pe~~  147 (272)
T PRK06210        107 LRKPVIAAINGACAGIGLTHALMC--DVRFAADGAKFTTAFAR  147 (272)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhC--CEEEEeCCCEEechHHh
Confidence            999999999999999999999999  57999999999876554

>PRK03580 carnitinyl-CoA dehydratase; Provisional

Probab=91.93  E-value=1.2  Score=40.34  Aligned_cols=91  Identities=15%  Similarity=0.125  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+.+.|..++.+   ++|. |.+.+.|. .. .|-.+..+           ......+..|..++.||.+.+-
T Consensus        26 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (261)
T PRK03580         26 IDAKTSFAMGEVFLNFRDD---PELRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN  102 (261)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecccCHHHHhccCcchhhhhhhhhHHHHHHHhCCCCEEEEEC
Confidence            5677788888887776642   3454 33444441 11 11111110           0123456778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      |.|.+.|.-|++++  +-|++.++++|-+-
T Consensus       103 G~a~GgG~~lalac--D~~ia~~~a~f~~p  130 (261)
T PRK03580        103 GYAFGGGFELALAA--DFIVCADNASFALP  130 (261)
T ss_pred             CeeehHHHHHHHHC--CEEEecCCCEEeCc
Confidence            99999999999999  46999999888653

>PRK05981 enoyl-CoA hydratase; Provisional

Probab=91.84  E-value=1.3  Score=39.98  Aligned_cols=97  Identities=12%  Similarity=0.007  Sum_probs=64.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc-----------------Hhh-HHHHHHHHhccCCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-----------------ETE-AFAIYDVMGYVKPP  171 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~-----------------v~a-GlAIyD~m~~i~~~  171 (257)
                      ++.++...+.+.|..++.++  .++. |.|.+.|... .|-.+..                 ... ...++..|...+.|
T Consensus        28 l~~~~~~~l~~~l~~~~~d~--~~v~vvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp  105 (266)
T PRK05981         28 VSIDMLGGLAEALDAIEDGK--AEVRCLVLTGAGRGFCTGANLQGRGSGGRESDSGGDAGAALETAYHPFLRRLRNLPCP  105 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcCC--CceEEEEEeCCCCCcccccCHHhhhcccccccccchhHHHHHHHHHHHHHHHHhCCCC
Confidence            67788888888887776422  2244 3344444221 1111111                 001 12366778889999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |.+.+-|.|.+.|..|++++  +-|++.++++|-+..+.-|
T Consensus       106 vIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~~e~~lG  144 (266)
T PRK05981        106 IVTAVNGPAAGVGMSFALMG--DLILCARSAYFLQAFRRIG  144 (266)
T ss_pred             EEEEECCEeehHHHHHHHhC--CEEEecCCCEEechHhhcC
Confidence            99999999999999999999  5799999999986665433

>TIGR01117 mmdA methylmalonyl-CoA decarboxylase alpha subunit

Probab=91.75  E-value=1.3  Score=44.69  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.+++..++.+..-+. +..+ -.-||-..+||||...  .-|.-|-+..+-.+++++.....|..+++.|.++|.|.+
T Consensus       328 ~G~~~~~~~~K~~r~i~-~a~~-~~lPlV~lvDs~G~~~g~~~E~~g~~~~~a~~~~a~~~~~vP~isvi~g~~~Gga~~  405 (512)
T TIGR01117       328 AGCLDIDSSDKIARFIR-FCDA-FNIPIVTFVDVPGFLPGVNQEYGGIIRHGAKVLYAYSEATVPKVTIITRKAYGGAYL  405 (512)
T ss_pred             cCCCCHHHHHHHHHHHH-HHHH-cCCCEEEEEeCcCccccHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCCchHHHH
Confidence            56777777766665443 3322 3679999999999421  112224566777778888888899999999999998766


Q ss_pred             HHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          187 LLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       187 IlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+++.  ..+..++.|++++.+=.|.+.
T Consensus       406 am~~~~~~~d~~~a~p~a~~~v~~pe~a  433 (512)
T TIGR01117       406 AMCSKHLGADQVYAWPTAEIAVMGPAGA  433 (512)
T ss_pred             HhccccCCCCEEEEcCCCeEeecCHHHH
Confidence            55431  135678999999998888754

This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane.

>PRK06495 enoyl-CoA hydratase; Provisional

Probab=91.54  E-value=1.9  Score=38.94  Aligned_cols=100  Identities=12%  Similarity=0.136  Sum_probs=65.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------h---h-HHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------T---E-AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------~---a-GlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.++..+  -|.|.+.|... .|-.+..+          .   . ...+++.|...+.||.+.+
T Consensus        27 l~~~~~~~l~~al~~~~~d~~vr--~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  104 (257)
T PRK06495         27 LSRELRDELIAVFDEISERPDVR--VVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIRECAKPVIAAV  104 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhCCCce--EEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            67788888888887776432222  23344555221 12111111          0   0 1235667888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccccc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEG  215 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~G  215 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-...-|..|
T Consensus       105 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~Gl~~  141 (257)
T PRK06495        105 NGPALGAGLGLVASC--DIIVASENAVFGLPEIDVGLAG  141 (257)
T ss_pred             CCeeehhHHHHHHhC--CEEEecCCCEeeChhhccCccc
Confidence            999999999999999  4699999999887655544433

>PRK06023 enoyl-CoA hydratase; Provisional

Probab=91.13  E-value=1.9  Score=38.83  Aligned_cols=94  Identities=13%  Similarity=0.017  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCCCC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++.+.+...|..++.+   +++.+.| .+.|... .|-.+..+           .....++..|..++.||...+-|
T Consensus        30 l~~~~~~~L~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  106 (251)
T PRK06023         30 ITRAMYATMAKALKAADAD---DAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSFGSEILDFLIALAEAEKPIVSGVDG  106 (251)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcCHHHHhhccccchhhHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            6778888888888777643   3444333 3333221 11111110           11234667888899999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .|.+.|..|++++  +-|++.++++|.+....
T Consensus       107 ~a~GgG~~la~ac--D~ria~~~a~f~~pe~~  136 (251)
T PRK06023        107 LAIGIGTTIHLHC--DLTFASPRSLFRTPFVD  136 (251)
T ss_pred             ceecHHHHHHHhC--CEEEEeCCCEecCcccc
Confidence            9999999999999  57999999999875543

>PRK07260 enoyl-CoA hydratase; Provisional

Probab=91.01  E-value=2.4  Score=38.19  Aligned_cols=90  Identities=19%  Similarity=0.137  Sum_probs=60.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h-------hHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-------EAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~-------aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+.+.|..++..   +++. |.|.+.|... .|-.+..+         .       ....+++.|..++.||.
T Consensus        26 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  102 (255)
T PRK07260         26 FNIPMCQEILEALRLAEED---PSVRFLLINANGKVFSVGGDLVEMKRAVDEDDVQSLVKIAELVNEISFAIKQLPKPVI  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCcccccCHHHHHhhccccchhhHHHHHHHHHHHHHHHHcCCCCEE
Confidence            5677778888877766643   2332 4455555321 11111111         0       11345667888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      ..+.|.|.+.|..|+++++  -|++.++++|.+
T Consensus       103 aav~G~a~GgG~~lala~D--~ria~~~a~f~~  133 (255)
T PRK07260        103 MCVDGAVAGAAANMAVAAD--FCIASTKTKFIQ  133 (255)
T ss_pred             EEecCeeehhhHHHHHhCC--EEEEeCCCEEec
Confidence            9999999999999999994  699999998875

>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase

Probab=90.98  E-value=2.1  Score=38.65  Aligned_cols=93  Identities=13%  Similarity=0.091  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH--------hh-HHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------TE-AFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v--------~a-GlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++...+.+.|..++.++   ++. |.|-+.|... .|..++.+        .. ...++..|..++.||...+-|.|
T Consensus        24 l~~~~~~~l~~~l~~~~~~~---~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  100 (251)
T TIGR03189        24 VDAAMIAALSAALGEHLEDS---ALRAVLLDAEGPHFSFGASVAEHMPDQCAAMLASLHKLVIAMLDSPVPILVAVRGQC  100 (251)
T ss_pred             CCHHHHHHHHHHHHHHHcCC---CceEEEEECCCCceecCcChhhhCchhHHHHHHHHHHHHHHHHhCCCCEEEEecCee
Confidence            67788888888887776432   333 4444445221 12211211        10 12356677788999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .+.|.-|.++++  -|++.++++|-+-..
T Consensus       101 ~GgG~~lal~cD--~~ia~~~a~f~~pe~  127 (251)
T TIGR03189       101 LGGGLEVAAAGN--LMFAAPDAKLGQPEI  127 (251)
T ss_pred             eeHHHHHHHhCC--EEEEcCCCEEeCchh
Confidence            999999999994  689988888776433

This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.

>PRK07509 enoyl-CoA hydratase; Provisional

Probab=90.93  E-value=1.9  Score=38.85  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh-------hH------------HHHHHHHhccCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EA------------FAIYDVMGYVKP  170 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~-------aG------------lAIyD~m~~i~~  170 (257)
                      ++.++.+.+...|..++.++   +|. |.|.+.|... .|-.+..+.       ..            ..++..|+.++.
T Consensus        27 l~~~~~~~l~~al~~~~~d~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  103 (262)
T PRK07509         27 LDFAMFEELIATIKRLKKDR---GIRAVILSGEGGAFCAGLDVKSVASSPGNAVKLLFKRLPGNANLAQRVSLGWRRLPV  103 (262)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCcCCCcCHHHHhcccchhhhhHhhhhHHHHHHHHHHHHHHHhCCC
Confidence            67788888888887776432   333 3444444221 121111100       00            123455678899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ||.+.+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       104 pvIaav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  141 (262)
T PRK07509        104 PVIAALEGVCFGGGLQIALGA--DIRIAAPDTKLSIMEAK  141 (262)
T ss_pred             CEEEEECCeeecchHHHHHhC--CEEEecCCCEeecchhc
Confidence            999999999999999999999  46999999998876543

>PRK07854 enoyl-CoA hydratase; Provisional

Probab=90.86  E-value=1.8  Score=38.91  Aligned_cols=89  Identities=15%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc-------HhhHHHHHHHHhccCCCEEEEEeeeehh
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY-------ETEAFAIYDVMGYVKPPIFTLCVGNAWG  182 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~-------v~aGlAIyD~m~~i~~~V~Tv~~G~AaS  182 (257)
                      ++.++..++...|..++. +   ++. |.|-+.|... .|-.+..       ......++..|..++.||...+-|.|.+
T Consensus        24 l~~~~~~~l~~al~~~~~-~---~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kP~Iaav~G~a~G   99 (243)
T PRK07854         24 LNAELCEELREAVRKAVD-E---SARAIVLTGQGTVFCAGADLSGDVYADDFPDALIEMLHAIDAAPVPVIAAINGPAIG   99 (243)
T ss_pred             CCHHHHHHHHHHHHHHhc-C---CceEEEEECCCCceecccCCccchhHHHHHHHHHHHHHHHHhCCCCEEEEecCcccc
Confidence            677888888888776652 2   333 4444545221 1111111       0112346677878899999999999999


Q ss_pred             HHHHHHccCCCCCeeecCCcEEee
Q 025131          183 EAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       183 ~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      .|.-|++++  +-|++.++++|-+
T Consensus       100 gG~~lal~c--D~~ia~~~a~f~~  121 (243)
T PRK07854        100 AGLQLAMAC--DLRVVAPEAYFQF  121 (243)
T ss_pred             cHHHHHHhC--CEEEEcCCCEEec
Confidence            999999999  4699999988875

>PRK07468 enoyl-CoA hydratase; Provisional

Probab=90.81  E-value=2.2  Score=38.61  Aligned_cols=93  Identities=12%  Similarity=0.220  Sum_probs=61.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---------------hHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---------------aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.+   ++|. |.|.+.|... .|-.+..+.               ....+++.|+.++.||..
T Consensus        29 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  105 (262)
T PRK07468         29 LSARMIAELTTAARRLAAD---AAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKALNDLPKPLIG  105 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            5677777777777666532   3333 4445555221 111111110               012367788899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+-..
T Consensus       106 av~G~a~GgG~~lala~--D~ria~~~a~f~~pe~  138 (262)
T PRK07468        106 RIQGQAFGGGVGLISVC--DVAIAVSGARFGLTET  138 (262)
T ss_pred             EECCEEEhHHHHHHHhC--CEEEEeCCCEEeCchh
Confidence            99999999999999999  4699999988766443

>PRK09674 enoyl-CoA hydratase-isomerase; Provisional

Probab=90.80  E-value=2.2  Score=38.48  Aligned_cols=94  Identities=12%  Similarity=0.063  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h-hHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T-EAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~-aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++.+++.+.|..++.+   +++. |.|.+.|... .|-.+..+         . ....+++.|..++.||...+-|.
T Consensus        26 l~~~~~~~L~~~~~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  102 (255)
T PRK09674         26 LNNALLTQLVNELEAAATD---TSIGVCVITGNARFFAAGADLNEMAEKDLAATLNDPRPQLWQRLQAFNKPLIAAVNGY  102 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCceecccChHhHhccchhhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            5677788888887766643   3333 4444444221 12111111         1 11346777888999999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.+.|.-|++++  +-|++.++++|.+....
T Consensus       103 a~GgG~~lalac--D~~ia~~~a~f~~pe~~  131 (255)
T PRK09674        103 ALGAGCELALLC--DIVIAGENARFGLPEIT  131 (255)
T ss_pred             eehHHHHHHHhC--CEEEecCCCEEeCchhh
Confidence            999999999999  57999999988775544

>PRK06143 enoyl-CoA hydratase; Provisional

Probab=90.67  E-value=2  Score=38.84  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=63.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.+....+.+.|..++.+   +++. |.|-+.|. .. .|-.+..+            .....+++.|...+.||.+.+
T Consensus        31 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  107 (256)
T PRK06143         31 LGTPVILALTQALRWLAAD---PDVRVLVLRGAGEKAFIGGADIKEMATLDQASAEAFISRLRDLCDAVRHFPVPVIARI  107 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCcEEEEEEeCCCCcccCCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6778888888888777643   2343 44445441 21 22221211            111346777888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       108 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  139 (256)
T PRK06143        108 PGWCLGGGLELAAAC--DLRIAAHDAQFGMPEVR  139 (256)
T ss_pred             CCEEeehhHHHHHhC--CEEEecCCCEEeCCccc
Confidence            999999999999999  46999999988764333

>PRK06190 enoyl-CoA hydratase; Provisional

Probab=90.63  E-value=2.7  Score=38.23  Aligned_cols=93  Identities=10%  Similarity=0.020  Sum_probs=62.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc----------HhhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY----------ETEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~----------v~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+...|..++.+   +++. |.|.+.|... .|-.+..          ......+++.|...+.||...+-|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAaV~G~  104 (258)
T PRK06190         28 LSAALRRALFAALAEADAD---DDVDVVVLTGADPAFCAGLDLKELGGDGSAYGAQDALPNPSPAWPAMRKPVIGAINGA  104 (258)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEECCCCCccCCcCHHHHhcccchhhHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            6778888888888777643   2333 3444444221 1111111          1112356778888999999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      |.+.|.-|++++  +-|++.++++|-+-..
T Consensus       105 a~GgG~~lalac--D~~ia~~~a~f~~pe~  132 (258)
T PRK06190        105 AVTGGLELALAC--DILIASERARFADTHA  132 (258)
T ss_pred             eecHHHHHHHhC--CEEEEeCCCEEECccc
Confidence            999999999999  4799999998875433

>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=90.56  E-value=1.7  Score=39.03  Aligned_cols=93  Identities=11%  Similarity=0.022  Sum_probs=61.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh---------hHHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~---------aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.+...++.+.|..++.+   +++. |.|-+.|... .|-.+..+.         ....++..|...+.||.+.+-|.|
T Consensus        29 l~~~~~~~L~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~a  105 (249)
T PRK07110         29 FSDELCDQLHEAFDTIAQD---PRYKVVILTGYPNYFATGGTQEGLLSLQTGKGTFTEANLYSLALNCPIPVIAAMQGHA  105 (249)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCeeCCcChHHHhhccchhhhHhhHHHHHHHHcCCCCEEEEecCce
Confidence            5677778888877766643   2333 3344445221 111111110         013567778889999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .+.|..|++++  +-|++.++++|-+...
T Consensus       106 ~GgG~~lal~c--D~~ia~~~a~f~~pe~  132 (249)
T PRK07110        106 IGGGLVLGLYA--DIVVLSRESVYTANFM  132 (249)
T ss_pred             echHHHHHHhC--CEEEEeCCCEecCchh
Confidence            99999999999  4799999988766443

>PLN02600 enoyl-CoA hydratase

Probab=90.54  E-value=2.2  Score=38.36  Aligned_cols=92  Identities=12%  Similarity=0.078  Sum_probs=60.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCC-CCC-CCCCccc-----------Hhh-HHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTG-TTK-GGEKLGY-----------ETE-AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG-~~~-~~~~~G~-----------v~a-GlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++.+++.+.|..++.+   +++.+. |-+.| ... .|-.+..           ... ...++..|..++.||...+
T Consensus        19 l~~~~~~~l~~~~~~~~~d---~~vr~vVl~g~~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   95 (251)
T PLN02600         19 IGKEMLRGLRSAFEKIQAD---ASARVVMLRSSVPGVFCAGADLKERRKMSPSEVQKFVNSLRSTFSSLEALSIPTIAVV   95 (251)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceeeCcCHHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            5777888888887776643   344433 33332 111 1111111           011 1234566778899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      -|.|.+.|.-|.+++  +-|++.++++|.+-.
T Consensus        96 ~G~a~GgG~~lala~--D~~ia~~~a~f~~pe  125 (251)
T PLN02600         96 EGAALGGGLELALSC--DLRICGEEAVFGLPE  125 (251)
T ss_pred             cCeecchhHHHHHhC--CEEEeeCCCEEeCcc
Confidence            999999999999999  479999999887733

>PRK05864 enoyl-CoA hydratase; Provisional

Probab=90.40  E-value=2.6  Score=38.53  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=58.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------------h-------hHHHHHHHHhccCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------T-------EAFAIYDVMGYVKP  170 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------------~-------aGlAIyD~m~~i~~  170 (257)
                      ++.++...+...|..++.+   ++|. |.|.+.|... .|-.+...            .       ....+++.|..++.
T Consensus        34 l~~~~~~~L~~~l~~~~~d---~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  110 (276)
T PRK05864         34 MAFDVMVPLKEALAEVSYD---NSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDVILALRRLHQ  110 (276)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHHHHHHHhCCC
Confidence            5777778888877766642   3444 3344444221 11111100            0       01235567778899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      ||...+-|.|.+.|.-|++++  +-|++.++++|.+
T Consensus       111 PvIaav~G~a~GgG~~Lalac--D~ria~~~a~f~~  144 (276)
T PRK05864        111 PVIAAVNGPAIGGGLCLALAA--DIRVASSSAYFRA  144 (276)
T ss_pred             CEEEEECCEeehhHHHHHHhC--CEEEeeCCCEecC
Confidence            999999999999999999999  4799999888864

>PRK11423 methylmalonyl-CoA decarboxylase; Provisional

Probab=90.25  E-value=2.6  Score=38.20  Aligned_cols=92  Identities=14%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC--CC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT--TK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~--~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++. |  + +. |.|.+.|+  .. .|-.+..+           ..-..++..|...+.||.+.+
T Consensus        28 l~~~~~~~l~~al~~~~~-d--~-v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~i~~~~kPvIaav  103 (261)
T PRK11423         28 LSKVLIDDLMQALSDLNR-P--E-IRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSYDDPLRQILRMIQKFPKPVIAMV  103 (261)
T ss_pred             CCHHHHHHHHHHHHHHhc-C--C-ceEEEEECCCCCCeeECCcCHHHHhhccccHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            577788888888776653 2  2 33 34444321  11 11111111           111245677888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+-..
T Consensus       104 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~  134 (261)
T PRK11423        104 EGSVWGGAFELIMSC--DLIIAASTSTFAMTPA  134 (261)
T ss_pred             ecEEechHHHHHHhC--CEEEecCCCEecCchh
Confidence            999999999999998  4689999988875443

>PRK08260 enoyl-CoA hydratase; Provisional

Probab=89.84  E-value=2.5  Score=39.05  Aligned_cols=49  Identities=16%  Similarity=-0.028  Sum_probs=42.2

Q ss_pred             HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+++.|..++.||...+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       104 ~~~~~l~~~pkPvIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~  152 (296)
T PRK08260        104 RVTLRIFDSLKPVIAAVNGPAVGVGATMTLAM--DIRLASTAARFGFVFGR  152 (296)
T ss_pred             HHHHHHHhCCCCEEEEECCeeehHhHHHHHhC--CEEEeeCCCEEecchhh
Confidence            35677888899999999999999999999999  57999999998876554

>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase

Probab=89.77  E-value=2.9  Score=37.73  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEE-EEcCCCC-CC-CCCCcccH----------hh-HHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYL-YINSTGT-TK-GGEKLGYE----------TE-AFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~L-yINSpG~-~~-~~~~~G~v----------~a-GlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+...|..++.+   ++|.+ .|.+.|. .. .|-.+..+          .. ...+++.|..++.||...+-
T Consensus        26 l~~~~~~~l~~al~~~~~d---~~vr~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  102 (256)
T TIGR03210        26 FRGQTCDELIHALKDAGYD---RQIGVIVLAGAGDKAFCTGGDQSTHDGGYDGRGTIGLPMEELHSAIRDVPKPVIARVQ  102 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcChHHHhccccchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5667778888877766643   34543 3334341 11 11111111          01 12356778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      |.|.+.|.-|++++  +-|++.++++|-+-.+
T Consensus       103 G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~  132 (256)
T TIGR03210       103 GYAIGGGNVLVTIC--DLTIASEKAQFGQVGP  132 (256)
T ss_pred             CEEehhhHHHHHhC--CEEEEeCCCEEecccc
Confidence            99999999999999  4699999998876443

Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.

>PRK08138 enoyl-CoA hydratase; Provisional

Probab=89.66  E-value=3.5  Score=37.29  Aligned_cols=92  Identities=13%  Similarity=0.109  Sum_probs=59.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH----------hhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE----------TEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v----------~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+.+.|..++.+   +++. |.|-+.|... .|-.+..+          .....+++.|..++.||...+-|.
T Consensus        32 l~~~~~~~l~~al~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G~  108 (261)
T PRK08138         32 LNMEVRQQLAEHFTELSED---PDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPVIAAVNGY  108 (261)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            6777888888887776543   3444 3333444221 12111111          011245677778899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      |.+.|.-|++++  +-|++.++++|.+-.
T Consensus       109 a~GgG~~lalac--D~ria~~~a~f~~pe  135 (261)
T PRK08138        109 ALGGGCELAMHA--DIIVAGESASFGQPE  135 (261)
T ss_pred             EEcHHHHHHHhC--CEEEecCCCEeeCcc
Confidence            999999999998  468888888877533

>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase

Probab=89.37  E-value=2.6  Score=38.42  Aligned_cols=49  Identities=12%  Similarity=0.130  Sum_probs=41.5

Q ss_pred             HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+++.|..++.||...+-|.|.+.|..|++++  +-|++.++++|.+-...
T Consensus       102 ~~~~~l~~~~kPvIaav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~  150 (275)
T PLN02664        102 DAITAIEQCRKPVIAAIHGACIGGGVDIVTAC--DIRYCSEDAFFSVKEVD  150 (275)
T ss_pred             HHHHHHHhCCCCEEEEECCccccchHHHHHhC--CEEEecCCCEeccHHHh
Confidence            35677888899999999999999999999999  46999999998764433

>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB

Probab=89.32  E-value=3.2  Score=37.31  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=60.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------hhH-----HHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------TEA-----FAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------~aG-----lAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++..++...|..++.++ .+  -|.|.+.|... .|-.+..+          ...     -.+++.|..++.||.+.
T Consensus        23 l~~~~~~~l~~~l~~~~~d~-v~--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa   99 (256)
T TIGR02280        23 FTAEMHLELREALERVERDD-AR--ALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRALPLPVVCA   99 (256)
T ss_pred             CCHHHHHHHHHHHHHHhcCC-cE--EEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            57788888888887776432 22  23344444221 11111110          011     12456788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      +-|.|.+.|..|++++  +-|++.++++|.+-
T Consensus       100 v~G~a~GgG~~lala~--D~ria~~~a~f~~p  129 (256)
T TIGR02280       100 VNGVAAGAGANLALAC--DIVLAAESARFIQA  129 (256)
T ss_pred             ECCeeehHHHHHHHhC--CEEEecCCCEEeCh
Confidence            9999999999999999  57999999988753

This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).

>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated

Probab=89.09  E-value=3.3  Score=37.30  Aligned_cols=94  Identities=12%  Similarity=0.115  Sum_probs=62.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCC-CCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG-TTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG-~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++..++.+.|..++.+   .++. |.|.+.| ... .|-.+..+            .....++..|...+.||...+
T Consensus        28 l~~~~~~~l~~~~~~~~~d---~~v~~vvl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK05809         28 LNSETLKELDTVLDDIEND---DNVYAVILTGAGEKAFVAGADISEMKDLNEEEGRKFGLLGNKVFRKLENLDKPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCcEEEEEEcCCCCceeeCcChHhHhccChHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            5677777787777666542   3343 3444545 221 12111111            012346777888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+....
T Consensus       105 ~G~a~GgG~~lal~c--D~~va~~~a~f~~pe~~  136 (260)
T PRK05809        105 NGFALGGGCELSMAC--DIRIASEKAKFGQPEVG  136 (260)
T ss_pred             cCeeecHHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence            999999999999999  46999999988765443

>PRK08150 enoyl-CoA hydratase; Provisional

Probab=89.00  E-value=3.7  Score=37.08  Aligned_cols=92  Identities=17%  Similarity=0.216  Sum_probs=60.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++..++...|..++  +   ++. |.|-+.|... .|-.+..+            .....+++.|..++.||.+.+-
T Consensus        26 l~~~~~~~l~~al~~~~--~---~vr~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  100 (255)
T PRK08150         26 LNDGLIAALRAAFARLP--E---GVRAVVLHGEGDHFCAGLDLSELRERDAGEGMHHSRRWHRVFDKIQYGRVPVIAALH  100 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--c---CCeEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            56777788888777665  2   232 3344444221 11111111            1123456778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       101 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  131 (255)
T PRK08150        101 GAVVGGGLELASAA--HIRVADESTYFALPEGQ  131 (255)
T ss_pred             CEEEcHHHHHHHhC--CEEEEeCCCEEeccccc
Confidence            99999999999999  46999999988764433

>PRK10949 protease 4; Provisional

Probab=88.93  E-value=1.1  Score=46.27  Aligned_cols=85  Identities=12%  Similarity=0.141  Sum_probs=63.0

Q ss_pred             hhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhH-HHHHHHHhccC---CCEEEEEeeeehhHHHHHHc
Q 025131          114 PSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA-FAIYDVMGYVK---PPIFTLCVGNAWGEAALLLG  189 (257)
Q Consensus       114 ~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aG-lAIyD~m~~i~---~~V~Tv~~G~AaS~AslIla  189 (257)
                      +....+++..|.....++..+-|.|.|||+|        |...+. -.|++.|+..+   .||..+  |-.++.+...+|
T Consensus        94 ~~~l~div~~i~~Aa~D~rIkgivL~i~s~g--------G~~~a~~~eI~~ai~~fk~sGKpVvA~--~~~~~s~~YyLA  163 (618)
T PRK10949         94 ENSLFDIVNTIRQAKDDRNITGIVLDLKNFA--------GADQPSMQYIGKALREFRDSGKPVYAV--GDSYSQGQYYLA  163 (618)
T ss_pred             cccHHHHHHHHHHHhcCCCceEEEEEeCCCC--------CccHHHHHHHHHHHHHHHHhCCeEEEE--ecCccchhhhhh
Confidence            3456788998888887778899999999998        765544 68999887665   467654  555566677666


Q ss_pred             cCCCCCeeecCCcEEeeecC
Q 025131          190 AGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       190 aG~kgkR~alPnS~iMIHqP  209 (257)
                      +.. ++-++.|.+.+.++-.
T Consensus       164 SaA-D~I~l~P~G~v~~~G~  182 (618)
T PRK10949        164 SFA-NKIYLSPQGVVDLHGF  182 (618)
T ss_pred             hhC-CEEEECCCceEEEeee
Confidence            544 5689999999887643

>PRK09076 enoyl-CoA hydratase; Provisional

Probab=88.86  E-value=3.5  Score=37.20  Aligned_cols=93  Identities=16%  Similarity=0.157  Sum_probs=62.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccHh-----------h-HHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET-----------E-AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v~-----------a-GlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+...|..++.+   +++. |.|.+.|. .. .|-.+..+.           . ...++..|..++.||...+
T Consensus        26 l~~~~~~~l~~al~~~~~d---~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  102 (258)
T PRK09076         26 WTADSLQALKQLVLELNAD---KDVYALVITGDGEKFFSAGADLNLFADGDKAVAREMARRFGEAFEALSAFRGVSIAAI  102 (258)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6777888888887777643   2343 44455451 11 122111110           1 1235667888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-..
T Consensus       103 ~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~  133 (258)
T PRK09076        103 NGYAMGGGLECALAC--DIRIAEEQAQMALPEA  133 (258)
T ss_pred             CCEEecHHHHHHHhC--CEEEecCCCEeeCccc
Confidence            999999999999999  4699999998876443

>PRK05995 enoyl-CoA hydratase; Provisional

Probab=88.84  E-value=4.3  Score=36.59  Aligned_cols=94  Identities=15%  Similarity=0.216  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++..++...|..++.+   +++. |.|.+.|... .|-.+..+               .....++..|...+.||.+
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK05995         28 FNETVIAELTAAFRALDAD---DSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYRCPKPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHcCCCCEEE
Confidence            6777888888888776643   2343 4455555221 12111110               0112356677788999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       105 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  138 (262)
T PRK05995        105 RVHGDAYAGGMGLVAAC--DIAVAADHAVFCLSEVR  138 (262)
T ss_pred             EECCEEEhhHHHHHHhC--CEEEeeCCCEEeCcccc
Confidence            99999999999999999  46999999988765444

>PLN02888 enoyl-CoA hydratase

Probab=88.82  E-value=4.8  Score=36.63  Aligned_cols=92  Identities=15%  Similarity=0.102  Sum_probs=61.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH--------h-hHHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE--------T-EAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v--------~-aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.+....+.+.|..++.++   +|. +.|.+.|... .|-.+..+        . ....++..|..++.||.+.+-|.|
T Consensus        34 l~~~~~~~l~~al~~~~~d~---~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIaav~G~a  110 (265)
T PLN02888         34 LTRPMMVELAAAFKRLDEDD---SVKVIILTGSGRAFCSGVDLTAAEEVFKGDVKDVETDPVAQMERCRKPIIGAINGFA  110 (265)
T ss_pred             CCHHHHHHHHHHHHHHhhCC---CceEEEEECCCCcccCCCCHHHHHhhccchhhHHHHHHHHHHHhCCCCEEEEECCee
Confidence            67778888888887776432   333 4445555221 12111111        0 112355667888999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      .+.|..|++++  +-|++.+++.|.+-.
T Consensus       111 ~GgG~~lal~c--D~ria~~~a~f~~pe  136 (265)
T PLN02888        111 ITAGFEIALAC--DILVASRGAKFIDTH  136 (265)
T ss_pred             echHHHHHHhC--CEEEecCCCEecCcc
Confidence            99999999999  579999998887643

>PRK05870 enoyl-CoA hydratase; Provisional

Probab=88.77  E-value=3  Score=37.46  Aligned_cols=93  Identities=15%  Similarity=0.136  Sum_probs=61.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc------------HhhHHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~------------v~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++..++...|..++.+   +++. +.|.+.|... .|-.+..            .......+..|...+.||...+-
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~  103 (249)
T PRK05870         27 VTAEMSAQLRAAVAAAEAD---PDVHALVVTGAGKAFCAGADLTALGAAPGRPAEDGLRRIYDGFLAVASCPLPTIAAVN  103 (249)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCeecCcChHHHhcccccchHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            5778888888888777643   3444 3344445221 1111111            11112345567788899999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      |.|.+.|.-|++++  +-|++.++++|.+...
T Consensus       104 G~a~GgG~~lal~c--D~ria~~~a~f~~pe~  133 (249)
T PRK05870        104 GAAVGAGLNLALAA--DVRIAGPKALFDARFQ  133 (249)
T ss_pred             CEeEchhHHHHHhC--CEEEEcCCCEEeCccc
Confidence            99999999999999  4799999998876544

>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=88.58  E-value=3.8  Score=40.28  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             CcEEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC--CCCC--c------ccHhhHH-------
Q 025131          103 NRIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK--GGEK--L------GYETEAF-------  159 (257)
Q Consensus       103 ~RIIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~--~~~~--~------G~v~aGl-------  159 (257)
                      -++|.|.-|     ++.++...+...|..++.++   +|. +.|.+.|...  ++.+  +      |....+.       
T Consensus        52 ~~~ItLNRP~~lNALs~~m~~eL~~al~~~~~D~---~vrvVVL~G~GkaFcAGgDl~~l~~~~~~~~~~~~~~~f~~~~  128 (407)
T PLN02851         52 SRAAILNRPSSLNALTIPMVARLKRLYESWEENP---DIGFVLMKGSGRAFCSGADVVSLYHLINEGNVEECKLFFENLY  128 (407)
T ss_pred             EEEEEECCCCcCCCCCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCccCCcCHHHHHhhccccchHHHHHHHHHHH
Confidence            457777776     78889999999998877543   344 3344444211  1111  0      0001111       


Q ss_pred             HHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          160 AIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       160 AIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .+...|...+.||...+.|.|.+.|.-|.++++  .|++.++++|-+-..
T Consensus       129 ~l~~~i~~~pKPvIA~v~G~amGGG~gLal~~D--~rVate~a~famPE~  176 (407)
T PLN02851        129 KFVYLQGTYLKPNVAIMDGITMGCGAGISIPGM--FRVVTDKTVFAHPEV  176 (407)
T ss_pred             HHHHHHHhCCCCEEEEEcCEEeeHHHHHHHhCC--EEEEeCCceEecchh
Confidence            122345567889999999999999999999984  677777777665433

>PRK07938 enoyl-CoA hydratase; Provisional

Probab=88.57  E-value=4.5  Score=36.42  Aligned_cols=96  Identities=13%  Similarity=0.073  Sum_probs=62.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH------hh-------HHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE------TE-------AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v------~a-------GlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.+   +++. |.|.+.|... .|-.+..+      ..       ....++.|..++.||...+
T Consensus        25 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav  101 (249)
T PRK07938         25 LPSAGWFALADAITAAGAD---PDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECAVPVIAAV  101 (249)
T ss_pred             CCHHHHHHHHHHHHHhhcC---CCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6677778888877766543   3333 4445555221 12111111      00       1235667778899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+-...-|
T Consensus       102 ~G~a~GgG~~Lal~c--D~ria~~~a~f~~pe~~~G  135 (249)
T PRK07938        102 HGFCLGGGIGLVGNA--DVIVASDDATFGLPEVDRG  135 (249)
T ss_pred             cCEEeehHHHHHHhC--CEEEEeCCCEeeCccceec
Confidence            999999999999999  4699999998876444333

>PRK05980 enoyl-CoA hydratase; Provisional

Probab=88.55  E-value=3.1  Score=37.50  Aligned_cols=92  Identities=12%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH----------------hhHHHHHHHHhccCCCE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE----------------TEAFAIYDVMGYVKPPI  172 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V  172 (257)
                      ++.++..++...|..++.+   ++|. |.|-+.|. .. .|-.+..+                .....+++.|..++.||
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  103 (260)
T PRK05980         27 LNYALIDRLLARLDAIEVD---ESVRAVILTGAGDRAFSAGADIHEFSASVAAGADVALRDFVRRGQAMTARLEAFPKPV  103 (260)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEEeCCCCceEcCcCHHHHhhhccccchhhHHHHHHHHHHHHHHHHhCCCCE
Confidence            5777888888887776643   2333 33344441 21 11111110                00123566788889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      ...+-|.|.+.|.-|++++  +-|++.++++|.+-.
T Consensus       104 Iaav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe  137 (260)
T PRK05980        104 IAAVNGLAFGGGCEITEAV--HLAIASERALFAKPE  137 (260)
T ss_pred             EEEEcCEEEhhhhHHhHhC--CEEEecCCCEecCcc
Confidence            9999999999999999998  469999998887633

>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase)

Probab=88.27  E-value=3.9  Score=36.97  Aligned_cols=96  Identities=14%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++..++.+.|..++.+   +++. |.|-+.|. .. .|-.+...             .....+++.|..++.||...
T Consensus        27 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  103 (259)
T TIGR01929        27 FRPLTVKEIIQALDDARED---PDIGVVILTGAGDKAFCSGGDQKVRGDYGYIDDSGVHRLNVLDVQRQIRTCPKPVIAM  103 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeEEEEEEeCCCCceEeCcChHhHhhccccchhhHHHHHHHHHHHHHHhCCCCEEEE
Confidence            5677778888877766542   3343 33444441 11 11111100             01124567788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|.+-...-|
T Consensus       104 v~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  138 (259)
T TIGR01929       104 VNGYAIGGGHVLHVVC--DLTIAAENARFGQTGPKVG  138 (259)
T ss_pred             EcCEEehHHHHHHHhC--CEEEecCCCEecCcccccc
Confidence            9999999999999999  4699999999887655433

This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.

>PRK06142 enoyl-CoA hydratase; Provisional

Probab=88.21  E-value=3.1  Score=37.75  Aligned_cols=94  Identities=15%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH-----------------------hhHHHHHHHHh
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE-----------------------TEAFAIYDVMG  166 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v-----------------------~aGlAIyD~m~  166 (257)
                      ++.++...+.+.|..++.+   ++|. |.|.+.|... .|-.+..+                       .....+++.|.
T Consensus        30 l~~~~~~~l~~~l~~~~~d---~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  106 (272)
T PRK06142         30 MNPAFWSELPEIFRWLDAD---PEVRAVVLSGSGKHFSYGIDLPAMAGVFGQLGKDGLARPRTDLRREILRLQAAINAVA  106 (272)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhhhcccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            6778888888888776642   3444 3444445221 11111100                       01134567788


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .++.||...+-|.|.+.|.-|+++++  -|++.++++|-+....
T Consensus       107 ~~~kpvIAav~G~a~GgG~~lalacD--~~ia~~~a~f~~pe~~  148 (272)
T PRK06142        107 DCRKPVIAAVQGWCIGGGVDLISACD--MRYASADAKFSVREVD  148 (272)
T ss_pred             hCCCCEEEEecCccccchHHHHHhCC--EEEecCCCeecchhhh
Confidence            89999999999999999999999994  6999999988665444

>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional

Probab=88.15  E-value=2.4  Score=39.00  Aligned_cols=93  Identities=6%  Similarity=-0.039  Sum_probs=60.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCC--CCC-CCCCcccHh---------h----H-HHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTG--TTK-GGEKLGYET---------E----A-FAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG--~~~-~~~~~G~v~---------a----G-lAIyD~m~~i~~~V~  173 (257)
                      ++.+...++.+.|..++.++   +|. |.|-+.|  ... .|-.+..+.         .    . ..+++.|..++.+|.
T Consensus        35 l~~~~~~eL~~al~~~~~d~---~vr~vVltg~g~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  111 (278)
T PLN03214         35 MTLAMWRSLDDALTALENDP---TVRGVVFASGLRRDVFTAGNDIAELYAPKTSAARYAEFWLTQTTFLVRLLRSRLATV  111 (278)
T ss_pred             CCHHHHHHHHHHHHHHHcCC---CceEEEEeCCCCCCcccCccCHHHHhccccchHHHHHHHHHHHHHHHHHHcCCCCEE
Confidence            67778888888887776432   333 2333433  111 111111100         0    0 124567788889999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ..+-|.|.+.|..|++++  +.|++.++++|-+-..
T Consensus       112 AaV~G~a~GgG~~lalac--D~ria~~~a~f~~pe~  145 (278)
T PLN03214        112 CAIRGACPAGGCAVSLCC--DYRLQTTEGTMGLNEV  145 (278)
T ss_pred             EEEcCcccchHHHHHHhC--CEEEecCCCEecCcHH
Confidence            999999999999999999  5799999998876443

>PF01039 Carboxyl_trans: Carboxyl transferase domain; InterPro: IPR000022 Members in this domain include biotin dependent carboxylases [, ]

Probab=88.14  E-value=0.77  Score=45.79  Aligned_cols=104  Identities=16%  Similarity=0.170  Sum_probs=69.6

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      +.+|.++.+.+.....-+-..+..  .-||-..+|.||-..+  -|.-|-+-.|-.+.+++...+.|+.|+++|.++|.|
T Consensus       305 ~~~G~~~~~~a~K~arfi~lcd~~--~iPlv~l~dtpGf~~g~~~E~~g~~~~ga~~~~a~~~~~vP~itvi~~~~~Gga  382 (493)
T PF01039_consen  305 QRAGALDPDGARKAARFIRLCDAF--NIPLVTLVDTPGFMPGPEAERAGIIRAGARLLYALAEATVPKITVIVRKAYGGA  382 (493)
T ss_dssp             CGGGEB-HHHHHHHHHHHHHHHHT--T--EEEEEEECEB--SHHHHHTTHHHHHHHHHHHHHHH-S-EEEEEEEEEEHHH
T ss_pred             cccccCChHHHHHHHHHHHHHHhh--CCceEEEeecccccccchhhhcchHHHHHHHHHHHHcCCCCEEEEEeCCccCcc
Confidence            445778887776665544333432  4699999999994432  222366777899999999999999999999999987


Q ss_pred             HHHHccCC--CCCeeecCCcEEeeecCCcc
Q 025131          185 ALLLGAGA--KGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       185 slIlaaG~--kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+.+++..  .+..++.|++++-+-.|.+.
T Consensus       383 ~~am~~~~~~~~~~~Awp~a~~~vm~~e~a  412 (493)
T PF01039_consen  383 YYAMCGRGYGPDFVFAWPTAEIGVMGPEGA  412 (493)
T ss_dssp             HHHTTGGGGTTSEEEEETT-EEESS-HHHH
T ss_pred             hhhhcccccchhhhhhhhcceeeecChhhh
Confidence            76666542  23578899999998877755

The carboxyl transferase domain carries out the following reaction; transcarboxylation from biotin to an acceptor molecule. There are two recognised types of carboxyl transferase. One of them uses acyl-CoA and the other uses 2-oxo acid as the acceptor molecule of carbon dioxide. All of the members in this family utilise acyl-CoA as the acceptor molecule.; GO: 0016874 ligase activity; PDB: 2F9Y_B 1XO6_B 1XNV_B 3MFM_C 3IBB_A 1XNW_F 3IAV_B 1XNY_A 3IB9_A 3U9S_F ....

>PRK08140 enoyl-CoA hydratase; Provisional

Probab=88.10  E-value=5.5  Score=35.91  Aligned_cols=92  Identities=17%  Similarity=0.168  Sum_probs=60.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH--------------hhH--HHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE--------------TEA--FAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v--------------~aG--lAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++ ++..+  -|.|-+.|... .|-.+...              ...  -.++..|..++.||.+
T Consensus        28 l~~~~~~~l~~~~~~~~-d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  104 (262)
T PRK08140         28 FTREMHRELREALDQVE-DDGAR--ALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRLRALPLPVIA  104 (262)
T ss_pred             CCHHHHHHHHHHHHHhc-CCCce--EEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            57778888888887776 43222  23333444221 11111110              000  1256678888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+-.
T Consensus       105 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe  136 (262)
T PRK08140        105 AVNGVAAGAGANLALAC--DIVLAARSASFIQAF  136 (262)
T ss_pred             EECCeeehhHHHHHHhC--CEEEecCCCEEeccc
Confidence            99999999999999999  579999999987533

>PRK07189 malonate decarboxylase subunit beta; Reviewed

Probab=87.91  E-value=2.7  Score=39.92  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=65.1

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCC----CCceEEEEcCCCCCCCCCCcccHhhHH-------HHHHHHhccC--CCEE
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDV----EKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF  173 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~----~k~I~LyINSpG~~~~~~~~G~v~aGl-------AIyD~m~~i~--~~V~  173 (257)
                      |++|.+.+...+.+...+ .+..++.    ..|+-+.+.|.|        +...+|.       .|+..+...+  .|+.
T Consensus        79 f~GGS~G~~~g~Ki~r~~-e~A~~~~~~~~~~PvV~l~dSGG--------aRlqEg~~~L~~~a~i~~~~~~ls~~VP~I  149 (301)
T PRK07189         79 FMGGSVGEVHGAKLAGAL-ELAAEDNRNGIPTAVLLLFETGG--------VRLQEANAGLAAIAEIMRAIVDLRAAVPVI  149 (301)
T ss_pred             ccCcCcCHHHHHHHHHHH-HHHHHhCCCCCCCCEEEEecCCC--------cCccchHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            668888887777777644 4444443    268999999999        5544433       2343333333  6999


Q ss_pred             EEEeee--ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       174 Tv~~G~--AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +++.|-  |++-++++.+.+  +..+|.+++++.+--|.
T Consensus       150 ~vv~G~~gc~GG~a~~a~l~--D~iIm~~~a~iglaGP~  186 (301)
T PRK07189        150 GLIGGRVGCFGGMGIAAALC--SYLIVSEEGRLGLSGPE  186 (301)
T ss_pred             EEEcCCCCCcHHHHHHHhcC--CEEEEECCcEEeccCHH
Confidence            999998  777777777777  46789999999887663

>PLN02921 naphthoate synthase

Probab=87.80  E-value=5.1  Score=38.03  Aligned_cols=96  Identities=15%  Similarity=0.166  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCC-CC-CCCCcccH----------hh---HHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGYE----------TE---AFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~-~~-~~~~~G~v----------~a---GlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.+   ++|.+.| -+.|. .. .|--+..+          ..   ...++..|..++.||...
T Consensus        91 l~~~~~~eL~~al~~~~~d---~~vrvVVLtg~G~k~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAa  167 (327)
T PLN02921         91 FRPRTVKELQRAFNDARDD---SSVGVIILTGKGTKAFCSGGDQAVRGKDGYVGPDDAGRLNVLDLQIQIRRLPKPVIAM  167 (327)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEecCCCCceecCcChhhhhcccccchhHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            6788888888888777643   3454433 33331 11 11111110          01   123456778889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|..|++++  +-|++.++++|.+..+..|
T Consensus       168 VnG~a~GGG~~Lalac--D~riA~~~A~f~~pe~~~G  202 (327)
T PLN02921        168 VAGYAVGGGHILHMVC--DLTIAADNAVFGQTGPKVG  202 (327)
T ss_pred             ECCEEecHHHHHHHhC--CEEEEeCCCEEeCcccccC
Confidence            9999999999999999  5799999999988666543

>PRK06563 enoyl-CoA hydratase; Provisional

Probab=87.45  E-value=6.8  Score=35.21  Aligned_cols=94  Identities=11%  Similarity=0.023  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh------------hHHH-HHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------EAFA-IYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~------------aGlA-IyD~m~~i~~~V~Tv~  176 (257)
                      ++.++..++...|..++.+   +++. |.|-+.|... .|-.+..+.            .... .+..|+.++.||.+.+
T Consensus        23 l~~~~~~~l~~~l~~~~~d---~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav   99 (255)
T PRK06563         23 FDSAMLDDLALALGEYEAD---DELRVAVLFAHGEHFTAGLDLADVAPKLAAGGFPFPEGGIDPWGTVGRRLSKPLVVAV   99 (255)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEECCCCCCcCCcCHHHHhhccccchhhhhhhhhHHHHHHHhcCCCCEEEEE
Confidence            5677788888877766542   3344 4444545221 222111110            0111 2234677889999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      -|.|.+.|..|++++  +-|++.++++|-+....
T Consensus       100 ~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~  131 (255)
T PRK06563        100 QGYCLTLGIELMLAA--DIVVAADNTRFAQLEVQ  131 (255)
T ss_pred             cCeeecHHHHHHHhC--CEEEecCCCEEeChhhh
Confidence            999999999999999  57999999998775544

>PRK07327 enoyl-CoA hydratase; Provisional

Probab=87.34  E-value=5.7  Score=36.11  Aligned_cols=90  Identities=14%  Similarity=0.094  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh--------------hHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~--------------aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.+   ++|. |.|.+.|... .|-.+..+.              ....++..|..++.||...
T Consensus        36 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  112 (268)
T PRK07327         36 ADARMHRELADIWRDVDRD---PDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINCDKPIVSA  112 (268)
T ss_pred             CCHHHHHHHHHHHHHhhhC---CCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5778888888888777653   2343 3344444221 121111110              0123445567788999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+
T Consensus       113 v~G~a~GgG~~lalac--D~ria~~~a~f~~  141 (268)
T PRK07327        113 IHGPAVGAGLVAALLA--DISIAAKDARIID  141 (268)
T ss_pred             EcCeeeehhhHHHHhC--CEEEecCCCEEeC
Confidence            9999999999999999  4689989888865

>TIGR03133 malonate_beta malonate decarboxylase, beta subunit

Probab=87.19  E-value=4.4  Score=37.97  Aligned_cols=93  Identities=16%  Similarity=0.190  Sum_probs=64.0

Q ss_pred             EeCcccChhHHHHHHHHHHhchhc----CCCCceEEEEcCCCCCCCCCCcccHhhHH-------HHHHHHhccC--CCEE
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYE----DVEKPIYLYINSTGTTKGGEKLGYETEAF-------AIYDVMGYVK--PPIF  173 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~----d~~k~I~LyINSpG~~~~~~~~G~v~aGl-------AIyD~m~~i~--~~V~  173 (257)
                      |++|-+.+...+.++..+ .+..+    ...-|+-+.+.|.|        +.+.+|.       -|+..+...+  .|+.
T Consensus        70 ~~GGS~G~~~g~Ki~r~~-e~A~~~~~~~~~~PvV~l~dSgG--------aRlqEg~~~L~~~a~i~~~~~~ls~~vP~I  140 (274)
T TIGR03133        70 FQGGSVGEVHGAKIVGAL-RLAIEDNRKGQPTAVVLLLDTGG--------VRLQEANAGLIAIAEIMRAILDARAAVPVI  140 (274)
T ss_pred             ccCcCCCHHHHHHHHHHH-HHHHhhhhccCCCCEEEEEcCCC--------cChhhhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            668888887777776644 34433    12348999999999        5555543       2333333233  6999


Q ss_pred             EEEeee--ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          174 TLCVGN--AWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       174 Tv~~G~--AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +++.|-  |++-++++.+.++  ..+|.|++++.+--|.
T Consensus       141 svv~Gp~gc~GG~a~~a~l~D--~vim~~~a~i~~aGP~  177 (274)
T TIGR03133       141 GVIGGRVGCFGGMGIAAGLCS--YLIMTEEGRLGLSGPE  177 (274)
T ss_pred             EEEeCCCCcchHHHHHHhcCC--EEEEeCCcEEeccCHH
Confidence            999999  6777777777774  5789999999887663

Members of this protein family are the beta subunit of malonate decarboxylase. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase.

>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated

Probab=87.17  E-value=5.1  Score=36.66  Aligned_cols=92  Identities=15%  Similarity=0.237  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH-----------h-----hHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE-----------T-----EAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v-----------~-----aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+...|..++.+   +++. |.|.+.|... .|-.+...           .     ....+++.|..++.||.
T Consensus        32 l~~~m~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  108 (275)
T PRK09120         32 MSPTLNREMIDVLDALEFD---DDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRRLRWYQKPTI  108 (275)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6777888888877766643   3343 4444545221 11111111           0     11235667788899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      ..+.|.|.+.|.-|++++  +-|++.++++|.+-.
T Consensus       109 Aav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe  141 (275)
T PRK09120        109 AMVNGWCFGGGFSPLVAC--DLAIAADEAQFGLSE  141 (275)
T ss_pred             EEEcCEEechhHHHHHhC--CEEEEeCCcEecCCc
Confidence            999999999999999999  469999999887643

>PRK09245 enoyl-CoA hydratase; Provisional

Probab=87.17  E-value=4.2  Score=36.72  Aligned_cols=48  Identities=17%  Similarity=0.052  Sum_probs=40.9

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +++.|..++.||...+-|.|.+.|.-|++++  +-|++.++++|.+....
T Consensus        95 ~~~~l~~~~kpvIaav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  142 (266)
T PRK09245         95 IPLALYNLEVPVIAAVNGPAIGAGCDLACMC--DIRIASETARFAESFVK  142 (266)
T ss_pred             HHHHHHcCCCCEEEEECCEeecHHHHHHHhC--CEEEecCCCEEcccccc
Confidence            5667788899999999999999999999999  57999999988765444

>PLN02988 3-hydroxyisobutyryl-CoA hydrolase

Probab=86.92  E-value=4.7  Score=39.14  Aligned_cols=98  Identities=16%  Similarity=0.222  Sum_probs=62.8

Q ss_pred             EEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC--CCCCcccHh----------------hHHH
Q 025131          105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK--GGEKLGYET----------------EAFA  160 (257)
Q Consensus       105 IIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~--~~~~~G~v~----------------aGlA  160 (257)
                      +|.|.-|     ++.++...+.+.|..++.++   +|. |.|-+.|...  ++.+ ..+.                ....
T Consensus        21 ~ItLnRP~~lNALs~~m~~~L~~al~~~~~d~---~v~~VVl~G~G~~FcAGgDl-~~l~~~~~~~~~~~~~~~f~~~~~   96 (381)
T PLN02988         21 ILTLNRPKQLNALSFHMISRLLQLFLAFEEDP---SVKLVILKGHGRAFCAGGDV-AAVVRDIEQGNWRLGANFFSDEYM   96 (381)
T ss_pred             EEEECCCCccCCCCHHHHHHHHHHHHHHHhCC---CeeEEEEECCCCCcccCcCH-HHHHhhhcccchhHHHHHHHHHHH
Confidence            4555554     67788899999988776432   343 4455555211  1111 1111                0112


Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      ....|..++.||.+.+.|.|.+.|.-|.+++  +.|++.++++|-+-.
T Consensus        97 l~~~i~~~pKPvIa~v~G~a~GGG~~Lal~~--D~rvate~a~f~mPE  142 (381)
T PLN02988         97 LNYVMATYSKAQVSILNGIVMGGGAGVSVHG--RFRIATENTVFAMPE  142 (381)
T ss_pred             HHHHHHHCCCCEEEEecCeEeehhhHHhhcC--CeEEEcCCcEEeChh
Confidence            2235667889999999999999999999998  468888888776533

>PRK08290 enoyl-CoA hydratase; Provisional

Probab=86.57  E-value=3.7  Score=37.94  Aligned_cols=51  Identities=10%  Similarity=-0.079  Sum_probs=41.5

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI  213 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~  213 (257)
                      ++..|..++.||.+.+-|.|.+.|.-|++++  +-|++.++++|.+-...-|.
T Consensus       110 ~~~~l~~~pkPvIAaVnG~a~GgG~~lalac--D~ria~e~a~f~~pe~~lGl  160 (288)
T PRK08290        110 MCRRWRDLPKPTIAQVQGACIAGGLMLAWVC--DLIVASDDAFFSDPVVRMGI  160 (288)
T ss_pred             HHHHHHhCCCCEEEEECCEeeHHHHHHHHhC--CEEEeeCCCEecCcccccCc
Confidence            4456778899999999999999999999999  46999999988764444343

>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional

Probab=86.51  E-value=4.8  Score=38.26  Aligned_cols=93  Identities=13%  Similarity=0.175  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCC-CCC-CCCCcccHh----------------hHHHHHHHHhccCCCE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTG-TTK-GGEKLGYET----------------EAFAIYDVMGYVKPPI  172 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG-~~~-~~~~~G~v~----------------aGlAIyD~m~~i~~~V  172 (257)
                      ++.++...+.+.|..++.   +++|.+. |.+.| ... .|-.+..+.                ....++..|..++.||
T Consensus        27 l~~~m~~~L~~~l~~~~~---d~~vrvvVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (342)
T PRK05617         27 LSLEMIRAIDAALDAWED---DDAVAAVVIEGAGERGFCAGGDIRALYEAARAGDPLAADRFFREEYRLNALIARYPKPY  103 (342)
T ss_pred             CCHHHHHHHHHHHHHHhh---CCCeEEEEEEcCCCCceeCCcCHHHHHhhhccCCchhHHHHHHHHHHHHHHHHhCCCCE
Confidence            677777888887776654   3445533 34444 221 111111110                1123556677889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ...+-|.|.+.|.-|.+++  +-|++.++++|.+-..
T Consensus       104 IAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~  138 (342)
T PRK05617        104 IALMDGIVMGGGVGISAHG--SHRIVTERTKMAMPET  138 (342)
T ss_pred             EEEEcCEEEccHhHHhhhC--CEEEEcCCCEeeCCcc
Confidence            9999999999999999999  4799999998876443

>PRK05862 enoyl-CoA hydratase; Provisional

Probab=86.46  E-value=7.9  Score=34.82  Aligned_cols=92  Identities=11%  Similarity=0.127  Sum_probs=60.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc--------H--hhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY--------E--TEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~--------v--~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+.+.|..++.+   +++. |.|-+.|... .|-.+..        .  ......+..|..++.||...+-|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIaav~G~  104 (257)
T PRK05862         28 LNDALMDELGAALAAFDAD---EGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPVIAAVAGY  104 (257)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCEEEEEccE
Confidence            5677778888877766643   3343 3333444221 1211111        1  112345677888899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      |.+.|.-|++++  +.|++.++++|-+-.
T Consensus       105 a~GgG~~lalac--D~~ia~~~a~f~~pe  131 (257)
T PRK05862        105 ALGGGCELAMMC--DIIIAADTAKFGQPE  131 (257)
T ss_pred             EeHHHHHHHHHC--CEEEEeCCCEEeCch
Confidence            999999999999  468998888877533

>PRK07658 enoyl-CoA hydratase; Provisional

Probab=86.41  E-value=5.5  Score=35.75  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCccc------------H-hhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGY------------E-TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~------------v-~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.+   +++. |.|.+.|... .|-.+..            . .....++..|..++.||...+
T Consensus        25 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIAav  101 (257)
T PRK07658         25 LSSQVLHELSELLDQVEKD---DNVRVVVIHGEGRFFSAGADIKEFTSVTEAEQATELAQLGQVTFERVEKFSKPVIAAI  101 (257)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCceEEEEECCCCceEeCcCHHHHhccCchhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            5777788888877766643   2333 3445555221 1111110            0 112346777888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-.
T Consensus       102 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe  131 (257)
T PRK07658        102 HGAALGGGLELAMSC--HIRFATESAKLGLPE  131 (257)
T ss_pred             cCeeeeHHHHHHHhC--CEEEecCCCcccCcc
Confidence            999999999999999  479999988877644

>PRK07657 enoyl-CoA hydratase; Provisional

Probab=86.21  E-value=6.8  Score=35.30  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH--------h----hHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE--------T----EAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v--------~----aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.+   .+|. |.|.+.|. .. .|-.+..+        .    ....+++.|..++.||...+
T Consensus        28 l~~~~~~~l~~al~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav  104 (260)
T PRK07657         28 LSLALLEELQNILTQINEE---ANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLPQPVIAAI  104 (260)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            6778888888888776643   3343 44445452 21 22111111        0    11345677788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       105 ~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~  136 (260)
T PRK07657        105 NGIALGGGLELALAC--DFRIAAESASLGLTETT  136 (260)
T ss_pred             cCEeechHHHHHHhC--CEEEeeCCCEEcCchhc
Confidence            999999999999999  57999999988765443

>PRK06144 enoyl-CoA hydratase; Provisional

Probab=86.15  E-value=4.6  Score=36.61  Aligned_cols=91  Identities=14%  Similarity=0.151  Sum_probs=59.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++.+++...|..++.+   +++. |.|.+.|. .. .|-.+..+             .....++..|..++.||.+.
T Consensus        32 l~~~~~~~l~~~l~~~~~d---~~v~~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  108 (262)
T PRK06144         32 MTWAMYEGLAEICEAIAAD---PSIRAVVLRGAGDKAFVAGTDIAQFRAFSTAEDAVAYERRIDRVLGALEQLRVPTIAA  108 (262)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCceEEEEecCCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            4667778888887766542   3444 33444441 11 11111111             01123556677889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-
T Consensus       109 v~G~a~GgG~~lala~--D~~ia~~~a~f~~p  138 (262)
T PRK06144        109 IAGACVGGGAAIAAAC--DLRIATPSARFGFP  138 (262)
T ss_pred             ECCeeeehHHHHHHhC--CEEEecCCCEeech
Confidence            9999999999999999  57999999998653

>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated

Probab=86.10  E-value=5.8  Score=36.04  Aligned_cols=92  Identities=15%  Similarity=0.234  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.+   +++. |.|-+.|... .|-.+..+               .....++..|..++.||..
T Consensus        30 l~~~~~~el~~al~~~~~d---~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (265)
T PRK05674         30 FNAQMIRELILALDQVQSD---ASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYRLKIPTLA  106 (265)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHcCCCCEEE
Confidence            5667777777777766543   3444 3334444221 11111110               0012345567788899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+-.
T Consensus       107 aV~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe  138 (265)
T PRK05674        107 VVQGAAFGGALGLISCC--DMAIGADDAQFCLSE  138 (265)
T ss_pred             EEcCEEEechhhHhhhc--CEEEEeCCCEEeCcc
Confidence            99999999999999999  468999998887633

>PRK06494 enoyl-CoA hydratase; Provisional

Probab=86.08  E-value=8.2  Score=34.83  Aligned_cols=94  Identities=16%  Similarity=0.110  Sum_probs=58.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccHh---------hHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYET---------EAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v~---------aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++..++...|..++.+   +++. |.|-+.|. .. .|-.+....         ..+.-+..+..++.||...+-|.
T Consensus        28 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~  104 (259)
T PRK06494         28 LHLDAHFELEEVFDDFAAD---PEQWVAIVTGAGDKAFSAGNDLKEQAAGGKRGWPESGFGGLTSRFDLDKPIIAAVNGV  104 (259)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCcEEEEEEcCCCCceeccccHHhHhhcCcchhhhHHHHHHHHHhcCCCCEEEEECCE
Confidence            5677778888887776643   3343 33334341 11 121111110         11111222345678999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.+.|.-|++++  +-|++.++++|-+....
T Consensus       105 a~GgG~~lalac--D~ria~~~a~f~~pe~~  133 (259)
T PRK06494        105 AMGGGFELALAC--DLIVAAENATFALPEPR  133 (259)
T ss_pred             EecHHHHHHHhC--CEEEEeCCCEEeCcccc
Confidence            999999999999  47999999988775544

>PRK08321 naphthoate synthase; Validated

Probab=85.92  E-value=7.6  Score=36.12  Aligned_cols=47  Identities=11%  Similarity=0.074  Sum_probs=38.8

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCcEEeeecC
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQP  209 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~al-PnS~iMIHqP  209 (257)
                      +++.|..++.||...+-|.|.+.|.-|++++  +-|++. ++++|-+-..
T Consensus       127 ~~~~l~~~pkP~IAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~  174 (302)
T PRK08321        127 VQRLIRFMPKVVIAVVPGWAAGGGHSLHVVC--DLTLASREHARFKQTDA  174 (302)
T ss_pred             HHHHHHcCCCCEEEEEcCeeehHHHHHHHhC--CEEEEecCCCEEECCcc
Confidence            4456778889999999999999999999999  469998 6898876433

>PRK07396 dihydroxynaphthoic acid synthetase; Validated

Probab=85.85  E-value=6.9  Score=35.71  Aligned_cols=94  Identities=14%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH----------hh---HHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE----------TE---AFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v----------~a---GlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.+   ++|. |.|-+.|. .. .|-.+...          ..   ...+++.|..++.||...
T Consensus        37 l~~~~~~~l~~al~~~~~d---~~vr~vVltg~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  113 (273)
T PRK07396         37 FRPKTVKEMIDAFADARDD---DNIGVIILTGAGDKAFCSGGDQKVRGYGGYVDDDGVPRLNVLDLQRLIRTCPKPVIAM  113 (273)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEEeCCCCceEeCcChhhhhcccccchhhhhhhHHHHHHHHHHhCCCCEEEE
Confidence            6778888888888777643   3343 33334341 11 11111100          01   123566778889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-.+.
T Consensus       114 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  146 (273)
T PRK07396        114 VAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGPK  146 (273)
T ss_pred             ECCEEehHHHHHHHhC--CEEEeeCCcEEeccccc
Confidence            9999999999999999  57999999998875554

>PRK08272 enoyl-CoA hydratase; Provisional

Probab=85.81  E-value=7  Score=36.19  Aligned_cols=44  Identities=9%  Similarity=-0.064  Sum_probs=38.2

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      ++..|...+.||...+-|.|.+.|.-|++++  +-|++.++++|-+
T Consensus       119 ~~~~l~~~~kPvIAaV~G~a~GgG~~lalac--D~~ias~~a~f~~  162 (302)
T PRK08272        119 GFMSLWHAHKPTVAKVHGYCVAGGTDIALHC--DQVIAADDAKIGY  162 (302)
T ss_pred             HHHHHHhCCCCEEEEEccEeehhhHHHHHhC--CEEEEeCCCEecC
Confidence            4667778899999999999999999999999  4699999988754

>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated

Probab=85.80  E-value=7.5  Score=35.05  Aligned_cols=94  Identities=4%  Similarity=-0.045  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCCCC-CCCCcccH--------------hhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGTTK-GGEKLGYE--------------TEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~~~-~~~~~G~v--------------~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++..++.+.|..++  +   ++.+.| -+.|... .|-.+..+              .....++..|...+.||...
T Consensus        28 l~~~~~~~L~~~l~~~~--~---~vr~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIaa  102 (255)
T PRK07112         28 INDRLIAECMDVLDRCE--H---AATIVVLEGLPEVFCFGADFSAIAEKPDAGRADLIDAEPLYDLWHRLATGPYVTIAH  102 (255)
T ss_pred             CCHHHHHHHHHHHHHhh--c---CceEEEEEcCCCCcccCcCHHHHhhccccchhhhhhHHHHHHHHHHHHcCCCCEEEE
Confidence            57778888888877665  1   244333 3333221 11111110              01123566677888999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|..|+++++  -|++.++++|-+....-|
T Consensus       103 v~G~a~GgG~~lala~D--~~ia~~~a~f~~pe~~~G  137 (255)
T PRK07112        103 VRGKVNAGGIGFVAASD--IVIADETAPFSLSELLFG  137 (255)
T ss_pred             EecEEEcchhHHHHcCC--EEEEcCCCEEeCchhhhc
Confidence            99999999999999994  799999999877555433

>PRK12478 enoyl-CoA hydratase; Provisional

Probab=85.23  E-value=5  Score=37.32  Aligned_cols=48  Identities=13%  Similarity=-0.011  Sum_probs=41.3

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+..|..++.||...+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       104 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~A~f~~pe~~  151 (298)
T PRK12478        104 KFMAIWRASKPVIAQVHGWCVGGASDYALCA--DIVIASDDAVIGTPYSR  151 (298)
T ss_pred             HHHHHHhCCCCEEEEEccEEehhHHHHHHHC--CEEEEcCCcEEeccccc
Confidence            4556778899999999999999999999999  46999999998876554

>PRK06127 enoyl-CoA hydratase; Provisional

Probab=84.85  E-value=9.2  Score=34.77  Aligned_cols=95  Identities=14%  Similarity=0.061  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCcccH-------h------h-HHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKLGYE-------T------E-AFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~G~v-------~------a-GlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.+   .++. |.|.+.|. .. .|-.+..+       .      . ...+++.|..++.||..
T Consensus        35 l~~~~~~~l~~~l~~~~~d---~~v~~vVl~g~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa  111 (269)
T PRK06127         35 MSLDMWEALPQALAAAEDD---DAIRVVVLTGAGEKAFVSGADISQFEESRSDAEAVAAYEQAVEAAQAALADYAKPTIA  111 (269)
T ss_pred             CCHHHHHHHHHHHHHHHhC---CCcEEEEEEeCCCCceecCcCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            6778888888888777643   2333 33445441 21 11111110       0      1 12355677888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~  211 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+.....
T Consensus       112 av~G~a~GgG~~Lalac--D~~ia~~~a~f~~pe~~~  146 (269)
T PRK06127        112 CIRGYCIGGGMGIALAC--DIRIAAEDSRFGIPAARL  146 (269)
T ss_pred             EECCEEecHHHHHHHhC--CEEEeeCCCEeeCchhhh
Confidence            99999999999999999  579999999998765543

>PRK06213 enoyl-CoA hydratase; Provisional

Probab=84.84  E-value=12  Score=33.12  Aligned_cols=92  Identities=18%  Similarity=0.260  Sum_probs=61.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc-----------cHhhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG-----------YETEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G-----------~v~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+.+.|..++ .+ . .+ |.|...|... .|-.+.           .+..+..++..|...+.||.+.+-|.
T Consensus        26 l~~~~~~~l~~~l~~~~-~~-~-~v-vvl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvIAav~G~  101 (229)
T PRK06213         26 LSPAMIDALNAALDQAE-DD-R-AV-VVITGQPGIFSGGFDLKVMTSGAQAAIALLTAGSTLARRLLSHPKPVIVACTGH  101 (229)
T ss_pred             CCHHHHHHHHHHHHHhh-cc-C-cE-EEEeCCCCceEcCcCHHHHhcchHhHHHHHHHHHHHHHHHHcCCCCEEEEEcCe
Confidence            67778888888877665 22 2 22 4455555221 121111           12233456677788899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCC-cEEeeecC
Q 025131          180 AWGEAALLLGAGAKGNRAALPS-STIMIKQP  209 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPn-S~iMIHqP  209 (257)
                      |.+.|..|++++  +.|++.++ ++|-+-..
T Consensus       102 a~GgG~~lal~~--D~rva~~~~a~f~~pe~  130 (229)
T PRK06213        102 AIAKGAFLLLSA--DYRIGVHGPFKIGLNEV  130 (229)
T ss_pred             eeHHHHHHHHhC--CeeeEecCCcEEECchh
Confidence            999999999999  47999998 88776433

>PRK08788 enoyl-CoA hydratase; Validated

Probab=84.58  E-value=5.3  Score=37.25  Aligned_cols=93  Identities=16%  Similarity=0.038  Sum_probs=56.8

Q ss_pred             cChhHHHHHHHHHHhchhc--CCCCceE-EEEcCC-CCCC-CCCCcccHh--------h-----HHHHHHHHh------c
Q 025131          112 FVPSVTELILAEFLYLQYE--DVEKPIY-LYINST-GTTK-GGEKLGYET--------E-----AFAIYDVMG------Y  167 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~--d~~k~I~-LyINSp-G~~~-~~~~~G~v~--------a-----GlAIyD~m~------~  167 (257)
                      ++.+...++.+.|..++..  +.+.+|. |.|-+. |... .|-.+..+.        +     ...+++.+.      .
T Consensus        40 l~~~~~~eL~~al~~~~~~~~~~d~~vrvVVltg~~gk~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  119 (287)
T PRK08788         40 FNLELLDDIMNLQRAIRQRLDDSGLPVDFWVLASDVPGVFNLGGDLALFAELIRAGDRDALLAYARACVDGVHAFHRGFG  119 (287)
T ss_pred             CCHHHHHHHHHHHHHHHhhccCCCCCeEEEEEEcCCCCceEeCcCHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhcC
Confidence            5677778888888777640  0123455 334444 3111 111111110        0     123344443      4


Q ss_pred             cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       168 i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      .+.||...+-|.|.+.|.-|++++  +-|++.++++|-+
T Consensus       120 ~pkPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~  156 (287)
T PRK08788        120 AGAISIALVQGDALGGGFEAALSH--HTIIAERGAKMGF  156 (287)
T ss_pred             CCCCEEEEECCeeehHHHHHHHhC--CEEEecCCCEeeC
Confidence            678899999999999999999999  4699999987765

>PRK08139 enoyl-CoA hydratase; Validated

Probab=84.33  E-value=11  Score=34.38  Aligned_cols=96  Identities=9%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------h----hHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------T----EAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------~----aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++..++.+.|..++.+   ++|. |.|.+.|... .|-.+..+         .    ....+++.|..++.||...+
T Consensus        35 l~~~~~~~l~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  111 (266)
T PRK08139         35 LSEAMLAALQAALDAIAAD---PSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVALPQPVIARV  111 (266)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            5777888888887766542   3444 3334444221 12111111         0    01235667788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-....|
T Consensus       112 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  145 (266)
T PRK08139        112 HGIATAAGCQLVASC--DLAVAADTARFAVPGVNIG  145 (266)
T ss_pred             CceeeHHHHHHHHhC--CEEEEeCCCEEeCcccCcC
Confidence            999999999999999  5799999998876554433

>PRK07827 enoyl-CoA hydratase; Provisional

Probab=84.27  E-value=9  Score=34.52  Aligned_cols=92  Identities=17%  Similarity=0.190  Sum_probs=59.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.+....+...|..++.+   ++|. +.|.+.|... .|-.+..+               .....++..|..++.||.+
T Consensus        30 l~~~~~~el~~~l~~~~~d---~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  106 (260)
T PRK07827         30 LSARLVAQLHDGLRAAAAD---PAVRAVVLTHTGGTFCAGADLSEAGGGGGDPYDAAVARAREMTALLRAIVELPKPVIA  106 (260)
T ss_pred             CCHHHHHHHHHHHHHHhcC---CCeeEEEEEcCCCCccCCcChHHHhhcccCchhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            5667777788777666542   3343 4445555321 11111100               1112355667788999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      .+-|.|.+.|.-|+++++  -|++.++++|-+-.
T Consensus       107 av~G~a~GgG~~lalacD--~ria~~~a~f~~pe  138 (260)
T PRK07827        107 AIDGHVRAGGFGLVGACD--IVVAGPESTFALTE  138 (260)
T ss_pred             EEcCeeecchhhHHHhCC--EEEEcCCCEEeCcc
Confidence            999999999999999994  68999888876633

>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]

Probab=83.90  E-value=5.1  Score=36.01  Aligned_cols=97  Identities=11%  Similarity=0.072  Sum_probs=66.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEc-CCCCCC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN-STGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN-SpG~~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      .++.++...+.+.|..++.+   ++|.+-|= +.|-.. .|-.++.+             .....++..|..++.||...
T Consensus        28 al~~~~~~~l~~al~~~~~d---~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  104 (257)
T COG1024          28 ALNLEMLDELAEALDEAEAD---PDVRVVVLTGAGKAFSAGADLKELLSPEDGNAAENLMQPGQDLLRALADLPKPVIAA  104 (257)
T ss_pred             CCCHHHHHHHHHHHHHHhhC---CCeEEEEEECCCCceecccCHHHHhcccchhHHHHHHhHHHHHHHHHHhCCCCEEEE
Confidence            46778888888888777653   34443332 333111 12111221             11223677888999999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       105 v~G~a~GgG~eLal~~--D~ria~~~a~f~~pe~~iG  139 (257)
T COG1024         105 VNGYALGGGLELALAC--DIRIAAEDAKFGLPEVNLG  139 (257)
T ss_pred             EcceEeechhhhhhcC--CeEEecCCcEecCcccccc
Confidence            9999999999999999  5799999999998776644

>PLN02820 3-methylcrotonyl-CoA carboxylase, beta chain

Probab=83.75  E-value=8.3  Score=39.62  Aligned_cols=100  Identities=17%  Similarity=0.149  Sum_probs=68.7

Q ss_pred             cccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHH
Q 025131          110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL  187 (257)
Q Consensus       110 g~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslI  187 (257)
                      +.++.+.+... ++++.|-.. -.-||-..+|+||..-  .-|.-|-+..+-.+.+++.....|+.|+++|.+++.|.+.
T Consensus       380 g~l~~~~a~Ka-arfi~lc~~-~~iPlv~l~D~pGf~~G~~~E~~G~~~~~a~l~~A~a~~~VP~isvi~g~a~G~g~~a  457 (569)
T PLN02820        380 GILFTESALKG-AHFIELCAQ-RGIPLLFLQNITGFMVGSRSEASGIAKAGAKMVMAVACAKVPKITIIVGGSFGAGNYG  457 (569)
T ss_pred             CccCHHHHHHH-HHHHHHHHh-cCCCEEEEEECCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEECCcchHHHHH
Confidence            44665554444 334444332 2579999999999442  1233366777778888888889999999999999998887


Q ss_pred             HccC--CCCCeeecCCcEEeeecCCc
Q 025131          188 LGAG--AKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       188 laaG--~kgkR~alPnS~iMIHqP~~  211 (257)
                      +++.  ..+..++.|++.+-+=.|.+
T Consensus       458 M~g~~~~~d~~~awp~A~i~vmg~e~  483 (569)
T PLN02820        458 MCGRAYSPNFLFMWPNARIGVMGGAQ  483 (569)
T ss_pred             hcCcCCCCCEEEECCCCeEEecCHHH
Confidence            7643  23456778888887665543

>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]

Probab=83.48  E-value=2.4  Score=40.43  Aligned_cols=105  Identities=25%  Similarity=0.342  Sum_probs=71.9

Q ss_pred             cchHhhhccCcEEEeCcccChhH--HHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHH---h
Q 025131           94 PDLASYLYKNRIVYLGMSFVPSV--TELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVM---G  166 (257)
Q Consensus        94 ~Di~s~Ll~~RIIfLgg~I~~~~--a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m---~  166 (257)
                      -|..++|.++    +|++=-+..  |-++..+-..+     .-||-.+|+++|--.  .-|.-|   .+-||--.|   -
T Consensus       118 ~dtk~~~~rN----FGm~~PeGyRKAlRlm~~AekF-----~lPiitfIDT~GAypG~~AEErG---Q~eAIA~nL~em~  185 (317)
T COG0825         118 RDTKEKLKRN----FGMPRPEGYRKALRLMKLAEKF-----GLPIITFIDTPGAYPGIGAEERG---QSEAIARNLREMA  185 (317)
T ss_pred             ccchhHHHhc----CCCCCchHHHHHHHHHHHHHHh-----CCCEEEEecCCCCCCCcchhhcc---cHHHHHHHHHHHh
Confidence            4666777765    355544322  34444432222     579999999999332  222223   344554443   3


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+.||.++++|.-.|-|++-++.|+  +.+|+.||.+.+=.|.+.
T Consensus       186 ~LkvPiI~iVIGEGgSGGALAi~vad--~V~mle~s~ySVisPEG~  229 (317)
T COG0825         186 RLKVPIISIVIGEGGSGGALAIGVAD--RVLMLENSTYSVISPEGC  229 (317)
T ss_pred             CCCCCEEEEEecCCCchhhHHhhHHH--HHHHHHhceeeecChhhh
Confidence            67889999999999999999999995  568999999999999865

>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein

Probab=83.31  E-value=10  Score=37.28  Aligned_cols=98  Identities=13%  Similarity=0.160  Sum_probs=63.7

Q ss_pred             cEEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHhh-------------------
Q 025131          104 RIVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYETE-------------------  157 (257)
Q Consensus       104 RIIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~a-------------------  157 (257)
                      .+|-|.-|     ++.++...+...|..++.++   .|. +.|-+.|... .|   |++.+                   
T Consensus        48 ~~ItLNRP~~lNALs~~m~~~L~~al~~~~~D~---~vrvVVl~G~GkaFcAG---gDl~~l~~~~~~~~~~~~~~~~~~  121 (401)
T PLN02157         48 RTAILNRPPALNALTTHMGYRLQKLYKNWEEDP---NIGFVMMKGSGRAFCAG---GDIVSLYHLRKRGSPDAIREFFSS  121 (401)
T ss_pred             EEEEECCCCccCCCCHHHHHHHHHHHHHHhhCC---CCeEEEEECCCCCccCC---cCHHHHHhhccccchHHHHHHHHH
Confidence            34555555     67888888988888776533   343 3344444211 01   22211                   


Q ss_pred             HHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       158 GlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ...++..|..++.||...+.|.|.+.|.-|.+++  +.|++.++++|-+-..
T Consensus       122 ~~~l~~~i~~~pkPvIA~v~G~a~GGG~~Lal~c--D~rvate~a~fa~PE~  171 (401)
T PLN02157        122 LYSFIYLLGTYLKPHVAILNGVTMGGGTGVSIPG--TFRVATDRTIFATPET  171 (401)
T ss_pred             HHHHHHHHHhCCCCEEEEEeCeEeehhHHHHHhC--CEEEEeCCCEEEChhh
Confidence            1112345777889999999999999999999999  4688888888765433

>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase

Probab=82.60  E-value=9.9  Score=37.03  Aligned_cols=96  Identities=10%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEE-cCCCC-CC-CCCCccc--------------H-hhHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYI-NSTGT-TK-GGEKLGY--------------E-TEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-NSpG~-~~-~~~~~G~--------------v-~aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+...|..++.+   ++|.+.| -+.|. .. .|-.+..              . .....+++.|..++.||.
T Consensus        52 ls~~ml~eL~~al~~~~~D---~dVrvVVLTG~G~kaFCAG~DLke~~~~~~~~~~~~~~~~~~~~~l~~~i~~~pKPVI  128 (360)
T TIGR03200        52 YTTDMVKAIILAFRRASSD---RDVVAVVFTAVGDKAFCTGGNTKEYAEYYAGNPQEYRQYMRLFNDMVSAILGCDKPVI  128 (360)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEEcCCCCcccCCcCHHHHhhhcccChhHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6788888888888877643   3344333 33331 11 1111111              1 112356677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+-|.|.+.|.-|.+++  +-|++.++++|-+-.+.-|
T Consensus       129 AAVnG~AiGGGleLALaC--DlrIAse~A~Fg~PE~rlG  165 (360)
T TIGR03200       129 CRVNGMRIGGGQEIGMAA--DFTIAQDLANFGQAGPKHG  165 (360)
T ss_pred             EEECCEeeeHHHHHHHhC--CEEEEcCCCEEeCchhccC
Confidence            999999999999999999  4699999998887555433

Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07659 enoyl-CoA hydratase; Provisional

Probab=82.38  E-value=11  Score=34.01  Aligned_cols=92  Identities=10%  Similarity=0.017  Sum_probs=61.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh------------h-HHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET------------E-AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~------------a-GlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+...|..++  |  +++. |.|.+.|... .|-.+..+.            . ...++..|..++.||.+.+
T Consensus        30 l~~~~~~~l~~~l~~~~--d--~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~pvIaav  105 (260)
T PRK07659         30 LDEPMLKELLQALKEVA--E--SSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMPKLTISAI  105 (260)
T ss_pred             CCHHHHHHHHHHHHHhc--C--CCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEe
Confidence            67788888888887773  3  2344 4445555221 121111110            0 1224555667889999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+...
T Consensus       106 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~  136 (260)
T PRK07659        106 HGPAAGLGLSIALTA--DYVIADISAKLAMNFI  136 (260)
T ss_pred             cCceecHHHHHHHhC--CEEEEcCCCEEcCchh
Confidence            999999999999999  5799999998876554

>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit

Probab=81.34  E-value=10  Score=35.67  Aligned_cols=92  Identities=20%  Similarity=0.207  Sum_probs=64.1

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHH-------HH---HhccCCCEEEEE
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIY-------DV---MGYVKPPIFTLC  176 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIy-------D~---m~~i~~~V~Tv~  176 (257)
                      |++|.+...+++.+...+..-. + ..-|+-.+..|+|        ..+.+|....       ..   +..-..|..+++
T Consensus       131 f~gGSmg~~~geKi~r~~e~A~-~-~~lPlV~l~dSgG--------aRmqEg~~sL~~~ak~~~~~~~~~~~~vP~IsVv  200 (285)
T TIGR00515       131 FMGGSMGSVVGEKFVRAIEKAL-E-DNCPLIIFSASGG--------ARMQEALLSLMQMAKTSAALAKMSERGLPYISVL  200 (285)
T ss_pred             ccCCCccHHHHHHHHHHHHHHH-H-cCCCEEEEEcCCC--------cccccchhHHHhHHHHHHHHHHHHcCCCCEEEEE
Confidence            6688899888888877654433 2 2568999999999        5555554222       12   223357888999


Q ss_pred             eeeehhHHHHHHc-cCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLG-AGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIla-aG~kgkR~alPnS~iMIHqP~  210 (257)
                      .|-+++.++..++ .|+  -.+|-|+|.|.+--|.
T Consensus       201 ~gpt~GG~aas~a~~~D--~iia~p~A~ig~aGpr  233 (285)
T TIGR00515       201 TDPTTGGVSASFAMLGD--LNIAEPKALIGFAGPR  233 (285)
T ss_pred             eCCcchHHHHHHHhCCC--EEEEECCeEEEcCCHH
Confidence            9999888776664 663  5788999988876553

The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.

>PRK08252 enoyl-CoA hydratase; Provisional

Probab=81.05  E-value=15  Score=33.02  Aligned_cols=92  Identities=14%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcccHh-------hHHHHHHHH-hccCCCEEEEEeeeeh
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLGYET-------EAFAIYDVM-GYVKPPIFTLCVGNAW  181 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G~v~-------aGlAIyD~m-~~i~~~V~Tv~~G~Aa  181 (257)
                      ++.++...+.+.|..++.+   ++|. |.|.+.|... .|-.+..+.       ..-.+...+ ...+.||...+-|.|.
T Consensus        27 l~~~~~~~l~~~l~~~~~d---~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a~  103 (254)
T PRK08252         27 VNAAVAQGLAAALDELDAD---PDLSVGILTGAGGTFCAGMDLKAFARGERPSIPGRGFGGLTERPPRKPLIAAVEGYAL  103 (254)
T ss_pred             CCHHHHHHHHHHHHHHhhC---CCceEEEEECCCCceEcCcCHHHHhcccchhhhHHHHHHHHHhcCCCCEEEEECCEEe
Confidence            5778888888888777643   2333 3444444211 111111110       000111111 3567899999999999


Q ss_pred             hHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          182 GEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       182 S~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      +.|.-|++++  +-|++.++++|-+-.
T Consensus       104 GgG~~lalac--D~~ia~~~a~f~~pe  128 (254)
T PRK08252        104 AGGFELALAC--DLIVAARDAKFGLPE  128 (254)
T ss_pred             hHHHHHHHhC--CEEEEeCCCEEeCch
Confidence            9999999999  468999998887533

>PRK07799 enoyl-CoA hydratase; Provisional

Probab=80.76  E-value=10  Score=34.25  Aligned_cols=95  Identities=14%  Similarity=0.153  Sum_probs=59.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh--------h-H-H--H-H--HHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET--------E-A-F--A-I--YDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~--------a-G-l--A-I--yD~m~~i~~~V~Tv  175 (257)
                      ++.++...+...|..++.++..+  -|.|-+.|... .|-.+..+.        . . .  . +  +..+..++.||.+.
T Consensus        29 l~~~~~~~l~~al~~~~~d~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kpvIaa  106 (263)
T PRK07799         29 LSTEMLRIMVDAWDRVDNDPDIR--SCILTGAGGAFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLTKPLIAA  106 (263)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCccccccCHHHHhhccccchhhhhhhhhhHHHHHHHHhcCCCCEEEE
Confidence            67788888888887776533222  24444545221 121111100        0 0 0  0 1  11245678899999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       107 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  139 (263)
T PRK07799        107 VEGPAIAGGTEILQGT--DIRVAGESAKFGISEAK  139 (263)
T ss_pred             ECCeEeccHHHHHHhC--CEEEecCCCEecCcccc
Confidence            9999999999999999  47999999988764443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3mt6_R	207	Structure Of Clpp From Escherichia Coli In Complex		9e-21
3st9_A	197	Crystal Structure Of Clpp In Heptameric Form From S		3e-20
1yg8_A	193	The Structure Of A V6a Variant Of Clpp. Length = 19		3e-20
1tyf_A	193	The Structure Of Clpp At 2.3 Angstrom Resolution Su		3e-20
3v5i_A	203	The Crystal Structure Of The Mutant Clpp S98a (Stap		4e-20
3qwd_A	203	Crystal Structure Of Clpp From Staphylococcus Aureu		4e-20
3hln_A	193	Crystal Structure Of Clpp A153c Mutant With Inter-H		6e-20
1tg6_A	277	Crystallography And Mutagenesis Point To An Essenti		6e-19
3kti_A	199	Structure Of Clpp In Complex With Adep1 Length = 19		7e-19
3tt6_A	196	Structure Of Clpp From Bacillus Subtilis In Compres		7e-19
3tt7_A	197	Structure Of Clpp From Bacillus Subtilis In Complex		7e-19
3ktg_A	199	Structure Of Clpp From Bacillus Subtilis In Monocli		9e-19
2zl0_A	196	Crystal Structure Of H.Pylori Clpp Length = 196		1e-18
2zl3_A	196	Crystal Structure Of H.Pylori Clpp S99a Length = 19		1e-18
4gm2_A	205	The Crystal Structure Of A Peptidase From Plasmodiu		3e-15
3p2l_A	201	Crystal Structure Of Atp-Dependent Clp Protease Sub		3e-15
4hnk_A	219	Crystal Structure Of An Enzyme Length = 219		4e-15
3q7h_A	195	Structure Of The Clpp Subunit Of The Atp-Dependent		5e-15
2c8t_A	206	The 3.0 A Resolution Structure Of Caseinolytic Clp		3e-09
2ce3_A	200	Crystal Structure Of The Atp-Dependent Clp Protease		3e-09
2cby_A	208	Crystal Structure Of The Atp-Dependent Clp Protease		4e-09
2f6i_A	215	Crystal Structure Of The Clpp Protease Catalytic Do		5e-09
1y7o_A	218	The Structure Of Streptococcus Pneumoniae A153p Clp		2e-05

>pdb|3MT6|R Chain R, Structure Of Clpp From Escherichia Coli In Complex With Adep1 Length = 207

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 92/183 (50%), Gaps = 18/183 (9%)
Query: 65  DSFCKSKPRSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEF 124
           D+F    P   ++ MVI  TS     +   D+ S L K R+++L       +  LI+A+ 
Sbjct: 8   DNFA---PHMALVPMVIEQTS---RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQM 61
Query: 125 LYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXX 184
           L+L+ E+ EK IYLYINS G        G  T   +IYD M ++KP + T+C+G      
Sbjct: 62  LFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFIKPDVSTICMGQAASMG 113
Query: 185 XXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE----LVLYTEK 240
                          P+S +MI QP+G  +GQATD+EI  +E+  VK      + L+T +
Sbjct: 114 AFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQ 173
Query: 241 SPE 243
           S E
Sbjct: 174 SLE 176

>pdb|3ST9|A Chain A, Crystal Structure Of Clpp In Heptameric Form From Staphylococcus Aureus Length = 197

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 21  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 72
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 73  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 132
Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQAT++EIA   +   + +L
Sbjct: 133 GQATEIEIAANHILKTREKL 152

>pdb|1YG8|A Chain A, The Structure Of A V6a Variant Of Clpp. Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129
Query: 215 GQATDVEIARKEMKNVKAE----LVLYTEKSPE 243
           GQATD+EI  +E+  VK      + L+T +S E
Sbjct: 130 GQATDIEIHAREILKVKGRMNELMALHTGQSLE 162

>pdb|1TYF|A Chain A, The Structure Of Clpp At 2.3 Angstrom Resolution Suggests A Model For Atp-Dependent Proteolysis Length = 193

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129
Query: 215 GQATDVEIARKEMKNVKAE----LVLYTEKSPE 243
           GQATD+EI  +E+  VK      + L+T +S E
Sbjct: 130 GQATDIEIHAREILKVKGRMNELMALHTGQSLE 162

>pdb|3V5I|A Chain A, The Crystal Structure Of The Mutant Clpp S98a (Staphylococcus Aureus) Length = 203

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAAAMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQAT++EIA   +   + +L
Sbjct: 131 GQATEIEIAANHILKTREKL 150

>pdb|3QWD|A Chain A, Crystal Structure Of Clpp From Staphylococcus Aureus Length = 203

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/140 (35%), Positives = 75/140 (53%), Gaps = 8/140 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G                     P++ +MI QP+G  +
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQAT++EIA   +   + +L
Sbjct: 131 GQATEIEIAANHILKTREKL 150

>pdb|3HLN|A Chain A, Crystal Structure Of Clpp A153c Mutant With Inter-Heptamer Disulfide Bonds Length = 193

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 80/153 (52%), Gaps = 12/153 (7%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129
Query: 215 GQATDVEIARKEMKNVKAE----LVLYTEKSPE 243
           GQATD+EI  +E+  VK      + L+T +S E
Sbjct: 130 GQATDIEIHCREILKVKGRMNELMALHTGQSLE 162

>pdb|1TG6|A Chain A, Crystallography And Mutagenesis Point To An Essential Role For The N- Terminus Of Human Mitochondrial Clpp Length = 277

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L + RIV +      SV  L++A+ L+LQ E  +KPI++YINS G        G 
Sbjct: 74  DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GV 125
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M Y+  PI T CVG                     P+S IMI QP G   
Sbjct: 126 VTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGAR 185
Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD+ I  +E+  +K +L
Sbjct: 186 GQATDIAIQAEEIMKLKKQL 205

>pdb|3KTI|A Chain A, Structure Of Clpp In Complex With Adep1 Length = 199

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129
Query: 215 GQATDVEIARKEM 227
           GQAT++EIA K +
Sbjct: 130 GQATEIEIAAKRI 142

>pdb|3TT6|A Chain A, Structure Of Clpp From Bacillus Subtilis In Compressed State Length = 196

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129
Query: 215 GQATDVEIARKEM 227
           GQAT++EIA K +
Sbjct: 130 GQATEIEIAAKRI 142

>pdb|3TT7|A Chain A, Structure Of Clpp From Bacillus Subtilis In Complex With Dfp Length = 197

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 70
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 71  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 130
Query: 215 GQATDVEIARKEM 227
           GQAT++EIA K +
Sbjct: 131 GQATEIEIAAKRI 143

>pdb|3KTG|A Chain A, Structure Of Clpp From Bacillus Subtilis In Monoclinic Crystal Form Length = 199

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 8/133 (6%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG +   +V   I+++ L+L  ED EK I LYINS G        G 
Sbjct: 18  DIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLAAEDPEKEISLYINSPG--------GS 69
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   AIYD M ++KP + T+C+G                     P+S +MI QP+G  +
Sbjct: 70  ITAGMAIYDTMQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQ 129
Query: 215 GQATDVEIARKEM 227
           GQAT++EIA K +
Sbjct: 130 GQATEIEIAAKRI 142

>pdb|2ZL0|A Chain A, Crystal Structure Of H.Pylori Clpp Length = 196

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LYINS G        G 
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GV 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M +++P + T+C+G                     P S IMI QP+G  +
Sbjct: 72  ITSGLSIYDTMNFIRPDVSTICIGQAASMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQ 131
Query: 215 GQATDVEIARKEMKNVKA 232
           GQA+D+EI   E+  +K 
Sbjct: 132 GQASDIEIISNEILRLKG 149

>pdb|2ZL3|A Chain A, Crystal Structure Of H.Pylori Clpp S99a Length = 196

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/138 (36%), Positives = 70/138 (50%), Gaps = 8/138 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RIV L      SV   I+A+ L+L+ ED EK I LYINS G        G 
Sbjct: 20  DIYSRLLKDRIVLLSGEINDSVASSIVAQLLFLEAEDPEKDIGLYINSPG--------GV 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T   +IYD M +++P + T+C+G                     P S IMI QP+G  +
Sbjct: 72  ITSGLSIYDTMNFIRPDVSTICIGQAAAMGAFLLSCGAKGKRFSLPHSRIMIHQPLGGAQ 131
Query: 215 GQATDVEIARKEMKNVKA 232
           GQA+D+EI   E+  +K 
Sbjct: 132 GQASDIEIISNEILRLKG 149

>pdb|4GM2|A Chain A, The Crystal Structure Of A Peptidase From Plasmodium Falciparum Length = 205

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 4/158 (2%)
Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE-- 155
           S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +     
Sbjct: 23  SLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGI 82
Query: 156 TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRI-E 214
           T+  +I DV+ Y+   ++T C+G                      +S+  + Q    I  
Sbjct: 83  TDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPF 142
Query: 215 GQATDVEIARKEMKNVKAELVLYTEKSPE-DHGVVSDL 251
            QAT++EI  KE+ N K +++    K+ E D  V+S++
Sbjct: 143 NQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNV 180

>pdb|3P2L|A Chain A, Crystal Structure Of Atp-Dependent Clp Protease Subunit P From Francisella Tularensis Length = 201

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/148 (33%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 87  TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT 146
           TA  +   D+ S L K RIV+L          L++A+ L+L+ ED +K IY YINS G  
Sbjct: 14  TAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPGGX 73
Query: 147 KGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMI 206
                  Y+T  F        +KP + T+C+G                     PSS I I
Sbjct: 74  VTAGXGVYDTXQF--------IKPDVSTICIGLAASXGSLLLAGGAKGKRYSLPSSQIXI 125
Query: 207 KQPIGRIEGQATDVEIARKEMKNVKAEL 234
            QP+G   GQA+D+EI  K +  +K  L
Sbjct: 126 HQPLGGFRGQASDIEIHAKNILRIKDRL 153

>pdb|4HNK|A Chain A, Crystal Structure Of An Enzyme Length = 219

Iteration: 1
 Score = 78.6 bits (192), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 81/161 (50%), Gaps = 4/161 (2%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           ++ S L   RI++L     P ++E I+++ LYL+YE   KPI+LYINSTG     + +  
Sbjct: 34  NIPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINL 93
Query: 155 E--TEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGR 212
              T+  +I DV+ Y+   ++T C+G                      +S+  + Q    
Sbjct: 94  NGITDVISIVDVINYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSI 153
Query: 213 I-EGQATDVEIARKEMKNVKAELVLYTEKSPE-DHGVVSDL 251
           I   QAT++EI  KE+ N K +++    K+ E D  V+S++
Sbjct: 154 IPFNQATNIEIQNKEIMNTKKKVIEIISKNTEKDTNVISNV 194

>pdb|3Q7H|A Chain A, Structure Of The Clpp Subunit Of The Atp-Dependent Clp Protease From Coxiella Burnetii Length = 195

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 68/140 (48%), Gaps = 8/140 (5%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+R+++L          L +A+ L+L+ E+  K I LYINS G        G 
Sbjct: 20  DIYSRLLKDRVIFLVGQVEDHXANLAIAQXLFLESENPNKDINLYINSPG--------GA 71
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIE 214
            T A AIYD   +VKP + TLC+G                     P S++ I Q +G  +
Sbjct: 72  VTSAXAIYDTXQFVKPDVRTLCIGQAASAGALLLAGGAKGKRHCLPHSSVXIHQVLGGYQ 131
Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQ TD++I  K+ + V  +L
Sbjct: 132 GQGTDIQIHAKQTQRVSDQL 151

>pdb|2C8T|A Chain A, The 3.0 A Resolution Structure Of Caseinolytic Clp Protease 1 From Mycobacterium Tuberculosis Length = 206

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 25  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 76
Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 77  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 136
Query: 220 VEIARKEMKNVKAEL 234
           + I  ++   +K E+
Sbjct: 137 IAIQAEQFAVIKKEM 151

>pdb|2CE3|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 200

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 75
Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 76  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 135
Query: 220 VEIARKEMKNVKAEL 234
           + I  ++   +K E+
Sbjct: 136 IAIQAEQFAVIKKEM 150

>pdb|2CBY|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Proteolytic Subunit 1 (Clpp1) From Mycobacterium Tuberculosis Length = 208

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Query: 100 LYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAF 159
           L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  +   
Sbjct: 24  LLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGM 75
Query: 160 AIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQPIGRIEGQATD 219
           AIYD M      I T  +G                     P + I++ QP+G + G A D
Sbjct: 76  AIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAAD 135
Query: 220 VEIARKEMKNVKAEL 234
           + I  ++   +K E+
Sbjct: 136 IAIQAEQFAVIKKEM 150

>pdb|2F6I|A Chain A, Crystal Structure Of The Clpp Protease Catalytic Domain From Plasmodium Falciparum Length = 215

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/155 (27%), Positives = 62/155 (40%), Gaps = 9/155 (5%)
Query: 83  FTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINS 142
           F      +    D+  + +K RI+YL         + ++++ LYL   +    I +YINS
Sbjct: 19  FQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINS 77
Query: 143 TGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSS 202
            G        G   E  AI D+  Y+K  I T+  G                     P+ 
Sbjct: 78  PG--------GSINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNC 129
Query: 203 TIMIKQPIGRIEGQATDVEIARKEMKNVKAELVLY 237
            IMI QP+G   G   D+EI  KE+  +K  L  Y
Sbjct: 130 RIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHY 164

>pdb|1Y7O|A Chain A, The Structure Of Streptococcus Pneumoniae A153p Clpp Length = 218

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 8/115 (6%)
Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ L      +    ++A+ L+L  +D  K IYLY+N+ G        G 
Sbjct: 37  DIYSRLLKDRIIXLTGPVEDNXANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GS 88
Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNXXXXXXXXXXXXXXXXXXXXPSSTIMIKQP 209
            +   AI D   ++K  + T+  G                     P++   I QP
Sbjct: 89  VSAGLAIVDTXNFIKADVQTIVXGXAASXGTVIASSGAKGKRFXLPNAEYXIHQP 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	1e-47
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	2e-47
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	5e-47
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	5e-46
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	2e-45
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	2e-45
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	4e-45

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A Length = 193

 Score =  155 bits (395), Expect = 1e-47
 Identities = 61/140 (43%), Positives = 85/140 (60%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 18  DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 69

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G A    A LL AGAKG R  LP+S +MI QP+G  +
Sbjct: 70  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 129

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQATD+EI  +E+  VK  +
Sbjct: 130 GQATDIEIHAREILKVKGRM 149

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} Length = 201

 Score =  154 bits (393), Expect = 2e-47
 Identities = 60/140 (42%), Positives = 81/140 (57%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K RIV+L          L++A+ L+L+ ED +K IY YINS G        G 
Sbjct: 22  DIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG--------GM 73

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T    +YD M ++KP + T+C+G A    +LLL  GAKG R +LPSS IMI QP+G   
Sbjct: 74  VTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFR 133

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQA+D+EI  K +  +K  L
Sbjct: 134 GQASDIEIHAKNILRIKDRL 153

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A Length = 203

 Score =  154 bits (391), Expect = 5e-47
 Identities = 61/140 (43%), Positives = 87/140 (62%), Gaps = 8/140 (5%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K+RI+ LG     +V   I+++ L+LQ +D EK IYLYINS G        G 
Sbjct: 19  DIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GS 70

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T  FAIYD + ++KP + T+C+G A    + LL AGAKG R ALP++ +MI QP+G  +
Sbjct: 71  VTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQ 130

Query: 215 GQATDVEIARKEMKNVKAEL 234
           GQAT++EIA   +   + +L
Sbjct: 131 GQATEIEIAANHILKTREKL 150

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A Length = 208

 Score =  151 bits (385), Expect = 5e-46
 Identities = 48/137 (35%), Positives = 65/137 (47%), Gaps = 8/137 (5%)

Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE 157
             L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  + 
Sbjct: 22  ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISA 73

Query: 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQA 217
             AIYD M      I T  +G A      LL AG KG R ALP + I++ QP+G + G A
Sbjct: 74  GMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSA 133

Query: 218 TDVEIARKEMKNVKAEL 234
            D+ I  ++   +K E+
Sbjct: 134 ADIAIQAEQFAVIKKEM 150

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1 Length = 215

 Score =  150 bits (382), Expect = 2e-45
 Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 9/140 (6%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+  + +K RI+YL         + ++++ LYL   +    I +YINS G        G 
Sbjct: 31  DVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPG--------GS 81

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
             E  AI D+  Y+K  I T+  G     A+++L +G KG R +LP+  IMI QP+G   
Sbjct: 82  INEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAF 141

Query: 215 GQATDVEIARKEMKNVKAEL 234
           G   D+EI  KE+  +K  L
Sbjct: 142 GHPQDIEIQTKEILYLKKLL 161

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1 Length = 277

 Score =  152 bits (386), Expect = 2e-45
 Identities = 72/216 (33%), Positives = 97/216 (44%), Gaps = 28/216 (12%)

Query: 24  TSPRTVNCNRNLSTSFISPFANGSVSSDFSGLRLRPDCLNPDSFCKSKPRSPVITMVIPF 83
            S R       L+  F +                    L       +    P+I +V+  
Sbjct: 13  ASCRYPALGPRLAAHFPAQRP-------PQRTLQNGLALQRCLHATATRALPLIPIVV-- 63

Query: 84  TSGTAWEQPPP-----DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYL 138
                 EQ        D+ S L + RIV +      SV  L++A+ L+LQ E  +KPI++
Sbjct: 64  ------EQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHM 117

Query: 139 YINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAA 198
           YINS G        G  T   AIYD M Y+  PI T CVG A    +LLL AG  G R +
Sbjct: 118 YINSPG--------GVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHS 169

Query: 199 LPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL 234
           LP+S IMI QP G   GQATD+ I  +E+  +K +L
Sbjct: 170 LPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQL 205

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1 Length = 218

 Score =  150 bits (380), Expect = 4e-45
 Identities = 53/168 (31%), Positives = 83/168 (49%), Gaps = 15/168 (8%)

Query: 70  SKPRSPVITMVIPFTS-GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQ 128
               S +I +VI  TS G        D+ S L K+RI+ L      ++   ++A+ L+L 
Sbjct: 15  VPRGSHMIPVVIEQTSRGERSY----DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLD 70

Query: 129 YEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLL 188
            +D  K IYLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++ 
Sbjct: 71  AQDSTKDIYLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIA 122

Query: 189 GAGAKGNRAALPSSTIMIKQPIGRIEG--QATDVEIARKEMKNVKAEL 234
            +GAKG R  LP++  MI QP+G   G  Q TD+ IA + +   +  L
Sbjct: 123 SSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTL 170

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4gm2_A	205	ATP-dependent CLP protease proteolytic subunit; st	100.0
3p2l_A	201	ATP-dependent CLP protease proteolytic subunit; st	100.0
3qwd_A	203	ATP-dependent CLP protease proteolytic subunit; ca	100.0
1tg6_A	277	Putative ATP-dependent CLP protease proteolytic S;	100.0
1yg6_A	193	ATP-dependent CLP protease proteolytic subunit; en	100.0
2f6i_A	215	ATP-dependent CLP protease, putative; structural g	100.0
1y7o_A	218	ATP-dependent CLP protease proteolytic subunit; hy	100.0
2cby_A	208	ATP-dependent CLP protease proteolytic subunit 1;	100.0
3viv_A	230	441AA long hypothetical NFED protein; protein-pept	99.84
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	99.52
3rst_A	240	Signal peptide peptidase SPPA; alpha/beta protein	99.0
3bf0_A	593	Protease 4; bacterial, hydrolase, inner membrane,	98.86
2f9y_A	339	Acetyl-COA carboxylase, carboxyltransferase alpha;	96.92
2f9i_A	327	Acetyl-coenzyme A carboxylase carboxyl transferase	96.66
2ej5_A	257	Enoyl-COA hydratase subunit II; structural genomic	95.68
2pbp_A	258	Enoyl-COA hydratase subunit I; B-oxidation, struct	95.64
3lke_A	263	Enoyl-COA hydratase; nysgrc, target 112 structural	95.37
2a7k_A	250	CARB; crotonase, antibiotic, beta-lactam, biosynth	95.36
1uiy_A	253	Enoyl-COA hydratase; lyase, beta-oxidation, croton	95.09
2bzr_A	548	Propionyl-COA carboxylase beta chain 5; fatty acid	94.98
2f9y_B	304	Acetyl-coenzyme A carboxylase carboxyl transferas	94.85
1sg4_A	260	3,2-trans-enoyl-COA isomerase, mitochondrial; crot	94.8
2vx2_A	287	Enoyl-COA hydratase domain-containing protein 3; i	94.69
1hzd_A	272	AUH, AU-binding protein/enoyl-COA hydratase; RNA-b	94.6
2uzf_A	273	Naphthoate synthase; lyase, menaquinone biosynthes	94.41
1dci_A	275	Dienoyl-COA isomerase; lyase; 1.50A {Rattus norveg	94.34
2ppy_A	265	Enoyl-COA hydratase; beta-oxidation, fatty acid me	94.24
2q35_A	243	CURF; crotonase, lyase; 1.65A {Lyngbya majuscula}	94.2
3pea_A	261	Enoyl-COA hydratase/isomerase family protein; stru	94.17
1vrg_A	527	Propionyl-COA carboxylase, beta subunit; TM0716, s	93.9
3iav_A	530	Propionyl-COA carboxylase complex B subunit; accas	93.79
3fdu_A	266	Putative enoyl-COA hydratase/isomerase; structural	93.76
3gow_A	254	PAAG, probable enoyl-COA hydratase; the spiral fol	93.66
3n6r_B	531	Propionyl-COA carboxylase, beta subunit; protein c	93.66
3moy_A	263	Probable enoyl-COA hydratase; ssgcid, seattle stru	93.56
1mj3_A	260	Enoyl-COA hydratase, mitochondrial; homohexamer, l	93.49
1on3_A	523	Methylmalonyl-COA carboxyltransferase 12S subunit;	93.46
3qmj_A	256	Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid,	93.16
1pix_A	587	Glutaconyl-COA decarboxylase A subunit; biotin-dep	93.13
1nzy_A	269	Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogen	93.08
1wz8_A	264	Enoyl-COA hydratase; lyase, crotonase, hexamer, st	93.07
3g64_A	279	Putative enoyl-COA hydratase; alpha-beta structure	92.92
4di1_A	277	Enoyl-COA hydratase ECHA17; structural genomics, s	92.91
2f6q_A	280	Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxis	92.82
3p5m_A	255	Enoyl-COA hydratase/isomerase; seattle structural	92.75
3kqf_A	265	Enoyl-COA hydratase/isomerase family protein; IDP0	92.64
3he2_A	264	Enoyl-COA hydratase ECHA6; fatty acid metabolism,	92.62
3l3s_A	263	Enoyl-COA hydratase/isomerase family protein; crot	92.41
3i47_A	268	Enoyl COA hydratase/isomerase (crotonase); structu	92.3
3hrx_A	254	Probable enoyl-COA hydratase; the spiral fold, the	92.29
4eml_A	275	Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coe	92.25
3oc7_A	267	Enoyl-COA hydratase; seattle structural genomics c	92.21
1x0u_A	522	Hypothetical methylmalonyl-COA decarboxylase ALPH;	92.19
1ef8_A	261	Methylmalonyl COA decarboxylase; lyase; 1.85A {Esc	92.17
2gtr_A	261	CDY-like, chromodomain Y-like protein; structural	91.74
3t89_A	289	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	91.64
3rrv_A	276	Enoyl-COA hydratase/isomerase; structural genomics	91.59
3myb_A	286	Enoyl-COA hydratase; ssgcid, struct genomics, seat	91.57
4fzw_C	274	1,2-epoxyphenylacetyl-COA isomerase; structural ge	91.26
3t8b_A	334	1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase	91.19
2f9i_B	285	Acetyl-coenzyme A carboxylase carboxyl transferase	91.13
3sll_A	290	Probable enoyl-COA hydratase/isomerase; structural	90.88
3h81_A	278	Enoyl-COA hydratase ECHA8; niaid, decode, infectio	90.7
4hdt_A	353	3-hydroxyisobutyryl-COA hydrolase; ssgcid, carniti	90.57
3rsi_A	265	Putative enoyl-COA hydratase/isomerase; structural	90.54
3r6h_A	233	Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium m	90.44
2j5i_A	276	P-hydroxycinnamoyl COA hydratase/lyase; vanillin,	90.35
2fbm_A	291	Y chromosome chromodomain protein 1, telomeric IS;	90.33
3qk8_A	272	Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SB	90.25
3gf3_A	588	Glutaconyl-COA decarboxylase subunit A; sodium ION	90.25
1pjh_A	280	Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral	90.23
1szo_A	257	6-oxocamphor hydrolase; enzyme-product complex; HE	90.21
4fzw_A	258	2,3-dehydroadipyl-COA hydratase; structural genomi	89.04
3isa_A	254	Putative enoyl-COA hydratase/isomerase; structural	88.96
3u9r_B	555	MCC beta, methylcrotonyl-COA carboxylase, beta-sub	88.75
3njd_A	333	Enoyl-COA hydratase; ssgcid, mycobacerium smegmati	88.74
3qxz_A	265	Enoyl-COA hydratase/isomerase; structural genomics	88.42
4f47_A	278	Enoyl-COA hydratase ECHA19; ssgcid, seattle struct	88.29
3k8x_A	758	Acetyl-COA carboxylase; transferase, carboxyltrans	88.0
2x24_A	793	Acetyl-COA carboxylase; fatty acid biosynthesis, l	87.55
3h0u_A	289	Putative enoyl-COA hydratase; structural genomics,	87.53
3pe8_A	256	Enoyl-COA hydratase; emerald biostructures, struct	87.47
2j5g_A	263	ALR4455 protein; enzyme evolution, C-C bond hydrol	87.39
3t3w_A	279	Enoyl-COA hydratase; ssgcid, structural genomics,	87.31
3ot6_A	232	Enoyl-COA hydratase/isomerase family protein; stru	86.69
3swx_A	265	Probable enoyl-COA hydratase/isomerase; structural	86.15
3lao_A	258	Enoyl-COA hydratase/isomerase; alpha-beta sandwich	86.01
3hin_A	275	Putative 3-hydroxybutyryl-COA dehydratase; structu	85.7
3gkb_A	287	Putative enoyl-COA hydratase; structural genomics,	85.22
2w3p_A	556	Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ri	84.47
3ju1_A	407	Enoyl-COA hydratase/isomerase family protein; alph	84.37
3bpt_A	363	3-hydroxyisobutyryl-COA hydrolase; coenzyme A, bet	84.19
3r9t_A	267	ECHA1_1; ssgcid, seattle structural genomics cente	84.17
3tlf_A	274	Enoyl-COA hydratase/isomerase; structural genomics	83.49
3qre_A	298	Enoyl-COA hydratase, ECHA12_1; structural genomics	83.38
2np9_A	440	DPGC; protein inhibitor complex, oxidoreductase; H	82.95
3hp0_A	267	Putative polyketide biosynthesis enoyl-COA hydrata	82.55
3r9q_A	262	Enoyl-COA hydratase/isomerase; ssgcid, lyase,isome	81.97
3trr_A	256	Probable enoyl-COA hydratase/isomerase; ssgcid, st	80.5
3m6n_A	305	RPFF protein; enoyl-COA hydratase, lyase; 1.80A {X	80.47

>4gm2_A ATP-dependent CLP protease proteolytic subunit; structural genomics, structural genomics consortium, SGC, PR hydrolase; 2.80A {Plasmodium falciparum} PDB: 4hnk_A

Probab=100.00  E-value=3.4e-54  Score=379.12  Aligned_cols=169  Identities=34%  Similarity=0.567  Sum_probs=153.5

Q ss_pred             CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHH
Q 025131           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDV  164 (257)
Q Consensus        87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~  164 (257)
                      +.++++|+|||++||++|||||+++|+++++++|++||+||+.+|+.++|+|||||||+++  +|+.+|+|++|++|||+
T Consensus        12 ~~~~~~~~di~s~Ll~~Riifl~~~I~d~~a~~iiaqLl~L~~ed~~k~I~lyINSpG~~~~~~~~~~G~v~aglaIyd~   91 (205)
T 4gm2_A           12 SGRENLYFQGPSLLLSKRIIFLSSPIYPHISEQIISQLLYLEYESKRKPIHLYINSTGDIDNNKIINLNGITDVISIVDV   91 (205)
T ss_dssp             ----------CHHHHTTTEEEECSCCCHHHHHHHHHHHHHHHHHCTTCCEEEEEEECTTEETTEESCTTHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhcCCEEEECCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCCcCCCCCCCCHHHHHHHHHH
Confidence            5567899999999999999999999999999999999999999999999999999999774  47889999999999999


Q ss_pred             HhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc-ccCHHHHHHHHHHHHHHHHHHH-HHHHhcC
Q 025131          165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI-EGQATDVEIARKEMKNVKAELV-LYTEKSP  242 (257)
Q Consensus       165 m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~-~GqAsDi~i~a~el~~~k~~l~-iY~erTg  242 (257)
                      |++++++|+|+|+|+|||||++||+||+||+|+++|||++|||||++++ +||++|++++++||+++++.+. +|+++||
T Consensus        92 m~~~~~~V~t~~~G~AaS~as~il~aG~~gkR~~lP~a~iMIHqP~~~~~~G~a~di~i~a~el~~~~~~i~~iya~~TG  171 (205)
T 4gm2_A           92 INYISSDVYTYCLGKAYGIACILASSGKKGYRFSLKNSSFCLNQSYSIIPFNQATNIEIQNKEIMNTKKKVIEIISKNTE  171 (205)
T ss_dssp             HHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEEECCCCCCCCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcCCCEEEEEEeeehhHHHHHHhcCCCCCEEecCCCEEEEecCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999 9999999999999999999999 9999999


Q ss_pred             CCHHHHHHHHhhc
Q 025131          243 EDHGVVSDLKKAQ  255 (257)
Q Consensus       243 ~~~evI~~l~r~~  255 (257)
                      ++.|+|+++++.+
T Consensus       172 ~~~e~I~~~m~rd  184 (205)
T 4gm2_A          172 KDTNVISNVLERD  184 (205)
T ss_dssp             CCHHHHHHHTTSC
T ss_pred             CCHHHHHHHhcCC
Confidence            9999999777643

>3p2l_A ATP-dependent CLP protease proteolytic subunit; structural genomics, center for structural genomics of infec diseases, csgid; 2.29A {Francisella tularensis subsp} SCOP: c.14.1.1

Probab=100.00  E-value=3.3e-46  Score=326.59  Aligned_cols=170  Identities=38%  Similarity=0.621  Sum_probs=157.2

Q ss_pred             CeeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCccc
Q 025131           75 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY  154 (257)
Q Consensus        75 ~~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~  154 (257)
                      .++|++++   .+.++++++|||++||++|||||+|+|++.+++.+++||++|+.+++.++|.|||||||        |+
T Consensus         5 ~~~p~~~~---~~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~INSpG--------G~   73 (201)
T 3p2l_A            5 NLVPTVIE---KTAGGERAFDIYSRLLKERIVFLNGEVNDHSANLVIAQLLFLESEDPDKDIYFYINSPG--------GM   73 (201)
T ss_dssp             CCSSEECC---C-----CCEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BC
T ss_pred             CcCCeeee---eCCCCCcccCHHHHhhCCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------CC
Confidence            35666655   46778899999999999999999999999999999999999999998999999999999        99


Q ss_pred             HhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHH
Q 025131          155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAEL  234 (257)
Q Consensus       155 v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l  234 (257)
                      +++|++|||+|++++.+|+|+|.|+|+|+|++|+++|++|||+++|||++|||||+++..|+++|++++++|++++++.+
T Consensus        74 v~~~~~I~~~i~~~~~~v~t~~~G~AaS~g~~i~~ag~~g~r~~~p~a~imiH~p~~~~~G~a~di~~~a~~l~~~~~~~  153 (201)
T 3p2l_A           74 VTAGMGVYDTMQFIKPDVSTICIGLAASMGSLLLAGGAKGKRYSLPSSQIMIHQPLGGFRGQASDIEIHAKNILRIKDRL  153 (201)
T ss_dssp             HHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSSTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCeEEEEcCEehhHHHHHHHcCccCCEEEcCCCeEEEeccccccCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             H-HHHHhcCCCHHHHHHHHhhc
Q 025131          235 V-LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       235 ~-iY~erTg~~~evI~~l~r~~  255 (257)
                      . +|+++||++.++++++++.+
T Consensus       154 ~~~ya~~tG~~~e~i~~~~~~~  175 (201)
T 3p2l_A          154 NKVLAHHTGQDLETIVKDTDRD  175 (201)
T ss_dssp             HHHHHHHHCCCHHHHHHHTSSC
T ss_pred             HHHHHHHhCcCHHHHHHHhhcC
Confidence            8 99999999999999887754

>3qwd_A ATP-dependent CLP protease proteolytic subunit; caseinolytic protease, serin-protease, hydrolase; 2.10A {Staphylococcus aureus subsp} SCOP: c.14.1.1 PDB: 3v5e_A 3v5i_A 3sta_V 3st9_A

Probab=100.00  E-value=4.6e-46  Score=326.15  Aligned_cols=169  Identities=39%  Similarity=0.626  Sum_probs=157.0

Q ss_pred             eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (257)
Q Consensus        76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v  155 (257)
                      ++|++++.   ++++++.+|||++||++|||||+|+|++.+++.+++||++|+.+++.++|.|||||||        |++
T Consensus         3 ~~p~~~~~---~~~~~~~~d~~~~l~~~riI~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~v   71 (203)
T 3qwd_A            3 LIPTVIET---TNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPG--------GSV   71 (203)
T ss_dssp             CCCEEECC--------CEEEHHHHHHHTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCeeeee---cCCCCcccCHHHHHhcCCEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEeCCC--------CCH
Confidence            45666654   6678899999999999999999999999999999999999999988999999999999        999


Q ss_pred             hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  235 (257)
Q Consensus       156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~  235 (257)
                      ++|++|||+|++++++|+|+|.|+|+|+|++|+++|++|+|+++|||++|||||+++..||++|+++++++++++++.+.
T Consensus        72 ~~~~~I~~~i~~~~~~V~t~~~G~AaSag~~i~~ag~~g~r~~~p~a~imiHqP~~~~~G~a~di~~~a~~l~~~~~~~~  151 (203)
T 3qwd_A           72 TAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLN  151 (203)
T ss_dssp             HHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCCSSSTTTTSCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcEEEEeeeehhHHHHHHHcCCcCeEEEcCCceEEEecccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             -HHHHhcCCCHHHHHHHHhhc
Q 025131          236 -LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       236 -iY~erTg~~~evI~~l~r~~  255 (257)
                       +|+++||++.++++++++.+
T Consensus       152 ~~~a~~tG~~~e~i~~~~~~d  172 (203)
T 3qwd_A          152 RILSERTGQSIEKIQKDTDRD  172 (203)
T ss_dssp             HHHHHHHCCCHHHHHHHHTSC
T ss_pred             HHHHHHhCCCHHHHHHHhhcC
Confidence             99999999999999888764

>1tg6_A Putative ATP-dependent CLP protease proteolytic S; mitochondrial CLPP, CLP/HSP 100, ATP-dependent protease, HYD; HET: FME; 2.10A {Homo sapiens} SCOP: c.14.1.1

Probab=100.00  E-value=9.1e-44  Score=325.07  Aligned_cols=170  Identities=40%  Similarity=0.624  Sum_probs=153.6

Q ss_pred             CCeeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcc
Q 025131           74 SPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLG  153 (257)
Q Consensus        74 ~~~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G  153 (257)
                      ++++|++++   .+..+++|+|||++||++|||||+|+|++.+++.++++|++|+.+|+.++|.|||||||        |
T Consensus        56 ~~~~p~~~~---~~~~~~~~~di~s~ll~erII~l~G~I~d~~a~~iiaqL~~l~~ed~~k~I~L~INSPG--------G  124 (277)
T 1tg6_A           56 LPLIPIVVE---QTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------G  124 (277)
T ss_dssp             -CCCCBCC------------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------B
T ss_pred             CCCCCeeec---cCCCCcccccHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECCC--------C
Confidence            335666655   35567889999999999999999999999999999999999999898999999999999        9


Q ss_pred             cHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHH
Q 025131          154 YETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAE  233 (257)
Q Consensus       154 ~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~  233 (257)
                      +|++|++|||+|++++++|+|+|.|+|||+|++|+++|++|||+|+||+++|||||+++..|+++|+++++++++++++.
T Consensus       125 sV~ag~aIyd~I~~~k~pV~t~v~G~AASaG~~Ia~Agd~gkr~a~P~S~ImihqP~~g~~G~a~Di~~~a~ei~~~~~~  204 (277)
T 1tg6_A          125 VVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQ  204 (277)
T ss_dssp             CHHHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHCCCcCCEEEecCCEEEEecccccccCcHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HHHHhcCCCHHHHHHHHhh
Q 025131          234 LV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       234 l~-iY~erTg~~~evI~~l~r~  254 (257)
                      +. +|+++||++.++++++++.
T Consensus       205 ~~~i~a~~tG~~~e~i~~~~dr  226 (277)
T 1tg6_A          205 LYNIYAKHTKQSLQVIESAMER  226 (277)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHSS
T ss_pred             HHHHHHHHhCCCHHHHHHHHhc
Confidence            99 9999999999999987764

>1yg6_A ATP-dependent CLP protease proteolytic subunit; endopeptidase CLP, caseinolytic protease, protease TI, heat shock protein F21.5, hydrolase; 1.90A {Escherichia coli} SCOP: c.14.1.1 PDB: 1tyf_A 2fzs_A* 3mt6_R 1yg8_A 3hln_A 2zl2_A 2zl0_A 2zl4_A 2zl3_A 3tt7_A* 3tt6_A 3ktg_A 3kth_A 3kti_A* 3ktj_A* 3ktk_A* 3q7h_A

Probab=100.00  E-value=6.3e-41  Score=289.30  Aligned_cols=161  Identities=39%  Similarity=0.630  Sum_probs=154.1

Q ss_pred             CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  166 (257)
Q Consensus        87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~  166 (257)
                      ..++++++|||++|+++|||||+|+|++.+++.++++|++|+.+++.++|.|||||||        |++++|++|||+|+
T Consensus        10 ~~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~~~I~l~InSPG--------G~v~a~~~I~~~i~   81 (193)
T 1yg6_A           10 TSRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQ   81 (193)
T ss_dssp             SCSSCCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHHhcCCEEEEcCEEcHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------CCHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999999998888999999999999        99999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH  245 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~  245 (257)
                      +++.||+|+|.|+|||+|++|+++|++++|+|.||+++|+|||+++..|++.|+++.++++++.++.+. +|++++|++.
T Consensus        82 ~~~~pV~~~v~g~AaS~g~~Ia~ag~~~~r~a~p~s~i~ih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~  161 (193)
T 1yg6_A           82 FIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSL  161 (193)
T ss_dssp             HSSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             hcCCCEEEEEeeeHHHHHHHHHHCCCcCcEEEecCcEEEEEeccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999999999999989999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhc
Q 025131          246 GVVSDLKKAQ  255 (257)
Q Consensus       246 evI~~l~r~~  255 (257)
                      ++++++++.+
T Consensus       162 ~~i~~~~~~~  171 (193)
T 1yg6_A          162 EQIERDTERD  171 (193)
T ss_dssp             HHHHHHTSSC
T ss_pred             HHHHHHhcCC
Confidence            9999877643

>2f6i_A ATP-dependent CLP protease, putative; structural genomics, structural genomics conso SGC, hydrolase; 2.45A {Plasmodium falciparum} SCOP: c.14.1.1

Probab=100.00  E-value=1.9e-40  Score=292.34  Aligned_cols=166  Identities=29%  Similarity=0.494  Sum_probs=146.4

Q ss_pred             eecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHH
Q 025131           81 IPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA  160 (257)
Q Consensus        81 ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlA  160 (257)
                      ++++.....+++|+|||++||++|||||+|+|++.+++.++++|++|+.+++ ++|.|||||||        |+|++|++
T Consensus        17 ~~~~~~~~~~~~~~d~~~~l~~~riI~l~G~I~~~~a~~i~~~L~~l~~~~~-k~I~l~INSPG--------Gsv~a~~~   87 (215)
T 2f6i_A           17 LYFQGHMDIKDMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNINH-NDIKIYINSPG--------GSINEGLA   87 (215)
T ss_dssp             -----CCCCSCSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCC-SCEEEEEEECC--------BCHHHHHH
T ss_pred             cccCCCCccccccccHHHHHhCceEEEEccEECHHHHHHHHHHHHHHHhCCC-CcEEEEEECCC--------CCHHHHHH
Confidence            3454445666789999999999999999999999999999999999998888 99999999999        99999999


Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHH
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTE  239 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~e  239 (257)
                      |||+|++++.||+|+|.|+|||+|++|+++|++|+|+|.||+++|+|||+++..|++.|+.+.++|++++++.+. +|++
T Consensus        88 I~~~i~~~~~pV~t~v~g~AAS~g~~Ia~agd~g~i~a~p~s~i~ih~p~~~~~G~~~di~~~~~el~~~~~~i~~~ya~  167 (215)
T 2f6i_A           88 ILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSS  167 (215)
T ss_dssp             HHHHHHHSSSCEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCEEEEEeeEhHhHHHHHHHcCCcccEEEcCCCEEEEeccccccCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             hcCCCHHHHHHHHhhc
Q 025131          240 KSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       240 rTg~~~evI~~l~r~~  255 (257)
                      +||++.++++++++..
T Consensus       168 ~~g~~~e~i~~~~~~~  183 (215)
T 2f6i_A          168 FTNQTVETIEKDSDRD  183 (215)
T ss_dssp             HHCCCHHHHHHHHHTT
T ss_pred             HhCcCHHHHHHHHhCC
Confidence            9999999999877653

>1y7o_A ATP-dependent CLP protease proteolytic subunit; hydrolase; 2.51A {Streptococcus pneumoniae} SCOP: c.14.1.1

Probab=100.00  E-value=2e-40  Score=291.99  Aligned_cols=171  Identities=31%  Similarity=0.479  Sum_probs=141.3

Q ss_pred             CCCeeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCc
Q 025131           73 RSPVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL  152 (257)
Q Consensus        73 ~~~~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~  152 (257)
                      .++++|++++   .+.++++|+|||++||++|||||+|+|++.+++.|+++|++|+.+++.++|.|||||||        
T Consensus        18 ~~~~~p~~~~---~~~~~~~~~d~~~~l~~~rii~l~g~I~~~~a~~i~~~L~~l~~~~~~k~I~l~InSPG--------   86 (218)
T 1y7o_A           18 GSHMIPVVIE---QTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------   86 (218)
T ss_dssp             ----CCEECC----------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------
T ss_pred             CCCCCceeee---cCCCCcchhhHHHHhhcCCEEEEeCEECHHHHHHHHHHHHHHHhcCCCCCEEEEEECcC--------
Confidence            3445666554   35567789999999999999999999999999999999999999888999999999999        


Q ss_pred             ccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCccc--ccCHHHHHHHHHHHHHH
Q 025131          153 GYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI--EGQATDVEIARKEMKNV  230 (257)
Q Consensus       153 G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~--~GqAsDi~i~a~el~~~  230 (257)
                      |++++|++|||+|++++.||.|+|.|+|+|+|++|+++|++|||+|.||++||+|||+++.  .|+++|+++.+++++++
T Consensus        87 G~v~ag~~I~~~i~~~~~pV~t~v~G~AaS~G~~Ia~a~d~g~r~a~p~a~igih~p~~g~~~~G~~~di~~~~~~i~~~  166 (218)
T 1y7o_A           87 GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKT  166 (218)
T ss_dssp             BCHHHHHHHHHHHHHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEEccEeHHHHHHHHHcCCcCcEEEcCCcEEEEecccccccCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999888  89999999999999999


Q ss_pred             HHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131          231 KAELV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       231 k~~l~-iY~erTg~~~evI~~l~r~  254 (257)
                      ++.+. +|++++|++.+++++++..
T Consensus       167 ~~~~~~~~a~~~G~~~~~i~~~~~~  191 (218)
T 1y7o_A          167 RNTLEKILAENSGQSMEKVHADAER  191 (218)
T ss_dssp             HHHHHHHHHHHHTCCHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHhC
Confidence            99999 9999999999988876653

>2cby_A ATP-dependent CLP protease proteolytic subunit 1; serine protease, endopept mycobacterium tuberculosis, ATP-dependent protease; 2.6A {Mycobacterium tuberculosis} SCOP: c.14.1.1 PDB: 2c8t_A 2ce3_A

Probab=100.00  E-value=4.2e-39  Score=281.29  Aligned_cols=161  Identities=31%  Similarity=0.454  Sum_probs=141.5

Q ss_pred             CCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHh
Q 025131           87 TAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMG  166 (257)
Q Consensus        87 ~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~  166 (257)
                      +.++++|+|||++|+++|+|||+|+|++.+++.++++|++++.+++.++|.|||||||        |++++|++|||+|+
T Consensus        11 ~~~~~~~~~~~~~l~~~rii~l~G~I~~~~a~~i~~~L~~~~~~~~~k~I~l~InSPG--------G~v~a~~~I~~~i~   82 (208)
T 2cby_A           11 SQGLSLTDSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGMAIYDTMV   82 (208)
T ss_dssp             ----CHHHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHH
T ss_pred             CCCCcchhhHHHHhhcCcEEEEcCEECHHHHHHHHHHHHHHHhCCCCCCEEEEEECCC--------CCHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999999998888999999999999        99999999999999


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCH
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDH  245 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~  245 (257)
                      .++.||+|+|.|+|+|+|++|+++|++++|++.|++++|+|||+++..|++.|+++.+++++++++.+. +|++++|++.
T Consensus        83 ~~~~pV~~~v~g~AaS~g~~Ia~agd~~~~~a~p~a~igih~p~~~~~G~~~d~~~~~~~l~~~~~~~~~~~a~~~g~~~  162 (208)
T 2cby_A           83 LAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPI  162 (208)
T ss_dssp             HCSSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             hcCCCEEEEECcEeHHHHHHHHhCCCcCCEEEcCCcEEEEecccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCH
Confidence            999999999999999999999999999999999999999999999899999999999999999999999 9999999999


Q ss_pred             HHHHHHHhhc
Q 025131          246 GVVSDLKKAQ  255 (257)
Q Consensus       246 evI~~l~r~~  255 (257)
                      ++++++++.+
T Consensus       163 ~~i~~~~~~~  172 (208)
T 2cby_A          163 ERIEADSDRD  172 (208)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhCC
Confidence            9998655543

>3viv_A 441AA long hypothetical NFED protein; protein-peptide complex, alpha / beta motif, protease, membr protein stomatin, hydrolase-protein binding complex; 2.25A {Pyrococcus horikoshii} PDB: 3bpp_A 2deo_A

Probab=99.84  E-value=9.1e-21  Score=168.72  Aligned_cols=138  Identities=12%  Similarity=0.105  Sum_probs=121.2

Q ss_pred             cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEEEEE---eeee
Q 025131          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC---VGNA  180 (257)
Q Consensus       104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~---~G~A  180 (257)
                      .+|+|.++|++.+++.+.++|..++. ++.+.|.|+|||||        |+++++.+||++|++++.||.++|   .|.|
T Consensus        11 ~vI~i~g~I~~~~~~~l~~~l~~a~~-~~~~~Ivl~inspG--------G~v~~~~~i~~~i~~~~~PVia~v~p~~G~A   81 (230)
T 3viv_A           11 YVAQIKGQITSYTYDQFDRYITIAEQ-DNAEAIIIELDTPG--------GRADAMMNIVQRIQQSKIPVIIYVYPPGASA   81 (230)
T ss_dssp             EEEEEESCBCHHHHHHHHHHHHHHHH-TTCSEEEEEEEBSC--------EEHHHHHHHHHHHHTCSSCEEEEECSTTCEE
T ss_pred             EEEEEeCEECHHHHHHHHHHHHHHhc-CCCCEEEEEEeCCC--------cCHHHHHHHHHHHHhCCCCEEEEEecCCCEE
Confidence            46789999999999999999998875 56899999999999        999999999999999999999999   9999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCCc--ccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHhh
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIG--RIEGQATDVEIARKEMKNVKAELVLYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~~--~~~GqAsDi~i~a~el~~~k~~l~iY~erTg~~~evI~~l~r~  254 (257)
                      +|+|++|+++|+  +|+|.|+++||+|+|..  +..|++.+  ...+++..++..+..|++++|++.+.+++|++.
T Consensus        82 asaG~~ia~a~d--~~~a~p~a~ig~~~p~~~~~~~G~~~~--~~~k~~~~~~~~~~~la~~~Gr~~~~a~~~~~~  153 (230)
T 3viv_A           82 ASAGTYIALGSH--LIAMAPGTSIGACRPILGYSQNGSIIE--APPAITNYFIAYIKSLAQESGRNATIAEEFITK  153 (230)
T ss_dssp             ETHHHHHHHTSS--EEEECTTCEEECCCEEEEECTTSCEEE--CCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHT
T ss_pred             hHHHHHHHHhcC--ceeECCCCEEEeccceecCCCCCCchH--HHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHhc
Confidence            999999999995  69999999999999984  45676542  235666777777779999999999999887764

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=99.52  E-value=1.6e-14  Score=142.93  Aligned_cols=148  Identities=10%  Similarity=0.001  Sum_probs=96.9

Q ss_pred             cchHhhhccCcEEEeCccc---ChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCC
Q 025131           94 PDLASYLYKNRIVYLGMSF---VPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (257)
Q Consensus        94 ~Di~s~Ll~~RIIfLgg~I---~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~  170 (257)
                      .|.+++|+++   |+++++   ++..++.|+++|..+..+++.+.|.|+|||||+       |++.++.+|||+|++++.
T Consensus        49 ~~~~~~ll~~---~~~~~~~~~~~~~~~~i~~~L~~a~~d~~ik~I~L~inspGg-------G~v~~~~~I~~~i~~~k~  118 (593)
T 3bf0_A           49 SQRFSKLSRQ---LLGASSDRLQENSLFDIVNTIRQAKDDRNITGIVMDLKNFAG-------GDQPSMQYIGKALKEFRD  118 (593)
T ss_dssp             ---------------------CCEEEHHHHHHHHHHHHHCTTCCCEEEECTEEEE-------CCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHhh---hccCCcccccccCHHHHHHHHHHHHhCCCceEEEEEeCCCCC-------CcHHHHHHHHHHHHHHHh
Confidence            6888888888   788775   467899999999999887788999999999983       599999999999999963


Q ss_pred             ---CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc---cccCH---------------------------
Q 025131          171 ---PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR---IEGQA---------------------------  217 (257)
Q Consensus       171 ---~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~---~~GqA---------------------------  217 (257)
                         +|.+++. .|+|.+.+|.+++  +++++.|++.+|+|+|...   +.|..                           
T Consensus       119 ~gkpvva~~~-~aas~~y~lAsaa--d~i~~~P~~~vg~~g~~~~~~~~~~~l~klGi~~~~~~~G~~K~a~ep~~r~~m  195 (593)
T 3bf0_A          119 SGKPVYAVGE-NYSQGQYYLASFA--NKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRDDM  195 (593)
T ss_dssp             TTCCEEEEES-CEEHHHHHHHTTS--SEEEECTTCCEECCCCBCCEEECHHHHHHTTCEEEEEEECTTCGGGHHHHCSSC
T ss_pred             cCCeEEEEEc-cchhHHHHHHHhC--CEEEECCCceEEEecccccccCHHHHHHHcCCeEEEEEeecccCCCCcccCCCC
Confidence               4555532 3444444455555  7899999999999999854   11222                           


Q ss_pred             --HHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHHhh
Q 025131          218 --TDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLKKA  254 (257)
Q Consensus       218 --sDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~r~  254 (257)
                        .+-+...+.++.+.+.+. .+++++|++.+.++.+++.
T Consensus       196 s~~~re~~~~~l~~~~~~~~~~va~~Rg~~~e~l~~~~d~  235 (593)
T 3bf0_A          196 SPAAREADSRWIGELWQNYLNTVAANRQIPAEQVFPGAQG  235 (593)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHCCHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Confidence              122233334445555555 7899999999999876653

>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}

Probab=99.00  E-value=8.1e-09  Score=91.19  Aligned_cols=129  Identities=17%  Similarity=0.112  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc----CCCEEEEEeeeehhHHHHHHccC
Q 025131          116 VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV----KPPIFTLCVGNAWGEAALLLGAG  191 (257)
Q Consensus       116 ~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i----~~~V~Tv~~G~AaS~AslIlaaG  191 (257)
                      ....+.++|..+..++..+-|.|.+||||        |++.++..|++.++.+    +.||.+.+.|.|+|.|..|++++
T Consensus        30 ~~~~l~~~l~~a~~d~~v~~ivL~~~s~G--------g~~~~~~~i~~~l~~~~~~~~kPVia~v~g~a~~gG~~lA~a~  101 (240)
T 3rst_A           30 NHRTFLKNLERAKDDKTVKGIVLKVNSPG--------GGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGGYYISTAA  101 (240)
T ss_dssp             CHHHHHHHHHHHHHCTTEEEEEEEEEECC--------BCHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEETHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHhCCCcEEEEEEecCCC--------CCHHHHHHHHHHHHHHHHhCCCeEEEEECCeehHhHHHHHHhC
Confidence            35788888888877666788999999999        9999999999999874    66999999999999999999999


Q ss_pred             CCCCeeecCCcEEeeecCC---------------------ccc---cc------CHHHHHHHHHHHHHHHHHHH-HHHHh
Q 025131          192 AKGNRAALPSSTIMIKQPI---------------------GRI---EG------QATDVEIARKEMKNVKAELV-LYTEK  240 (257)
Q Consensus       192 ~kgkR~alPnS~iMIHqP~---------------------~~~---~G------qAsDi~i~a~el~~~k~~l~-iY~er  240 (257)
                        ++|++.|++++.++-..                     .+.   .|      ..++-+...+.++.+.+.+. ..++.
T Consensus       102 --D~i~a~~~a~~g~~Gv~~~~~~~~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~~~~f~~~Va~~  179 (240)
T 3rst_A          102 --DKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNSYEGFVDVISKG  179 (240)
T ss_dssp             --SEEEECTTCEEECCCCEEEEEECHHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CeeEECCCCeEeccceeeEecCHHHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              57999999999988331                     110   11      23455555566777777777 77888


Q ss_pred             cCCCHHHHHHHHhh
Q 025131          241 SPEDHGVVSDLKKA  254 (257)
Q Consensus       241 Tg~~~evI~~l~r~  254 (257)
                      .+.+.+.+..+.+.
T Consensus       180 R~l~~~~~~~~~~g  193 (240)
T 3rst_A          180 RGMPKAEVKKIADG  193 (240)
T ss_dssp             HTCCHHHHHHHCSS
T ss_pred             CCCCHHHHHHHhcC
Confidence            89999888876543

>3bf0_A Protease 4; bacterial, hydrolase, inner membrane, membrane, transmembrane; 2.55A {Escherichia coli} PDB: 3bez_A

Probab=98.86  E-value=8.2e-09  Score=102.15  Aligned_cols=140  Identities=14%  Similarity=0.092  Sum_probs=107.6

Q ss_pred             cEEEeCcccChh-------HHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc---CCCEE
Q 025131          104 RIVYLGMSFVPS-------VTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV---KPPIF  173 (257)
Q Consensus       104 RIIfLgg~I~~~-------~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i---~~~V~  173 (257)
                      .+|.|.++|...       ..+.+.++|..+..++..+-|.|++||||        |++.++..|++.++.+   +.||.
T Consensus       304 avI~l~g~i~~n~~~~~~~~~~~l~~~L~~a~~d~~vkaVVL~i~spG--------G~~~~~~~i~~~i~~l~~~~kPVi  375 (593)
T 3bf0_A          304 GVVFANGAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPG--------GSVTASEVIRAELAAARAAGKPVV  375 (593)
T ss_dssp             EEEEEEEEEESSSSCTTSEEHHHHHHHHHHHHHCTTEEEEEEEEEEEE--------ECHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             EEEEEeeeecCCccccchhHHHHHHHHHHHHHhCCCCCEEEEEecCCC--------CCHHHHHHHHHHHHHHHhCCCCEE
Confidence            357788888543       37899999988887667789999999999        9999999999988864   47999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC------------ccc-----------------ccCHHHHHHHH
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI------------GRI-----------------EGQATDVEIAR  224 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~------------~~~-----------------~GqAsDi~i~a  224 (257)
                      +.+.|.|+|.|..|++++  ++|+|.|++.+....+.            -|.                 .+..++.+...
T Consensus       376 a~v~g~AasgG~~iA~aa--D~iva~p~a~~Gsigv~~~~~~~~~~~~klGi~~~~~~~g~~k~~~~~~~~t~~~~~~l~  453 (593)
T 3bf0_A          376 VSMGGMAASGGYWISTPA--NYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSITRALPPEAQLMMQ  453 (593)
T ss_dssp             EEEEEEEETHHHHTTTTC--SEEEECTTCEEECCCEEEEEEECHHHHHHTTCEEECCBSCGGGCCCTTSCCCHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHhC--CEEEECCCCEeecceeEEecCchHHHHHhcCceeeeeecccccccCcCCCCCHHHHHHHH
Confidence            999999999999999999  47999999999765421            011                 12344555555


Q ss_pred             HHHHHHHHHHH-HHHHhcCCCHHHHHHHHh
Q 025131          225 KEMKNVKAELV-LYTEKSPEDHGVVSDLKK  253 (257)
Q Consensus       225 ~el~~~k~~l~-iY~erTg~~~evI~~l~r  253 (257)
                      +.+++....+. .+.+..|.+.+.++.+..
T Consensus       454 ~~l~~~~~~f~~~V~~~Rg~~~~a~~~l~~  483 (593)
T 3bf0_A          454 LSIENGYKRFITLVADARHSTPEQIDKIAQ  483 (593)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence            56666666666 788888999888776554

>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=96.92  E-value=0.0011  Score=61.85  Aligned_cols=105  Identities=21%  Similarity=0.216  Sum_probs=77.1

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeee
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++++.|.+|.++++....+...+. +..+. .-||-.++||||....  -|..|....+..+...+...+.|+.+++.|.
T Consensus       145 ~~~~~~~~G~~~~~~~~Ka~r~~~-~A~~~-~lPlI~lvDt~Ga~~g~~aE~~g~~~~~a~~l~al~~~~vPvIavV~G~  222 (339)
T 2f9y_A          145 KEKIRRNFGMPAPEGYRKALRLMQ-MAERF-KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGE  222 (339)
T ss_dssp             THHHHTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEE
T ss_pred             hhhhhhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCccchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence            346667889999988777666544 43333 5799999999994321  1222444444566777888899999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |+|.|+.+++++  +.++|.|++++-+=.|.
T Consensus       223 a~GGGa~~~~~~--D~via~p~A~~~v~~Pe  251 (339)
T 2f9y_A          223 GGSGGALAIGVG--DKVNMLQYSTYSVISPE  251 (339)
T ss_dssp             EEHHHHHTTCCC--SEEEECTTCEEESSCHH
T ss_pred             cCcHHHHHHhcc--CeeeecCCCEEEeeccc
Confidence            999999888887  57999999999764443

>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=96.66  E-value=0.0015  Score=60.55  Aligned_cols=104  Identities=20%  Similarity=0.223  Sum_probs=75.7

Q ss_pred             CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeee
Q 025131          103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       103 ~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      +++-+.+|.++++....+...+. +..+. .-||-.++||||....  -|..|....+..+...+...+.|+.+++.|.|
T Consensus       132 ~~~~~~~G~~~~~~~~Ka~r~~~-~A~~~-~~PlI~lvdt~Ga~~g~~ae~~g~~~~~a~~l~al~~~~vPvIavV~G~a  209 (327)
T 2f9i_A          132 DNIYRNFGMAHPEGYRKALRLMK-QAEKF-NRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEG  209 (327)
T ss_dssp             HHHHTGGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEESCSCCCHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEE
T ss_pred             hhhhhhcCCCCHHHHHHHHHHHH-HHhhc-CCCEEEEEeCCCCCcchhhhhhhhHHHHHHHHHHHHhCCCCEEEEEECCc
Confidence            35556788999987777666444 43333 5799999999994421  12224344445566778888999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +|.|+.+++++  +.++|.|+++|-+=.|.
T Consensus       210 ~GGGa~~~~~~--D~via~~~A~~~v~~pe  237 (327)
T 2f9i_A          210 GSGGALGIGIA--NKVLMLENSTYSVISPE  237 (327)
T ss_dssp             BHHHHHTTCCC--SEEEEETTCBCBSSCHH
T ss_pred             ChHHHHHHHCC--CEEEEcCCceEeecCch
Confidence            99999988887  57999999998764443

>2ej5_A Enoyl-COA hydratase subunit II; structural genomics, GK2038, NPPSFA, national project on prote structural and functional analyses; 2.00A {Geobacillus kaustophilus}

Probab=95.68  E-value=0.078  Score=46.47  Aligned_cols=94  Identities=11%  Similarity=0.019  Sum_probs=66.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh--------------hHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET--------------EAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~--------------aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+  |... .|   +|+.              ....++..|..++.||...+
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~--g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  101 (257)
T 2ej5_A           27 FTEQMNAEVTKALKQAGADPNVRCVVITGA--GRAFCAG---EDLSGVTEEMDHGDVLRSRYAPMMKALHHLEKPVVAAV  101 (257)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEEES--SSCSBCC---BCC-------CHHHHHHHTHHHHHHHHHHCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEEECC--CCCccCC---cCHHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            678888999998888876544454544443  2111 11   2221              12355677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       102 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  135 (257)
T 2ej5_A          102 NGAAAGAGMSLALAC--DFRLLSEKASFAPAFIHVG  135 (257)
T ss_dssp             CSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             CccccchhHHHHHhC--CEEEEcCCCEEeCcccccC
Confidence            999999999999999  5799999999887655433

>2pbp_A Enoyl-COA hydratase subunit I; B-oxidation, structural genomics, NPPSFA, nationa on protein structural and functional analyses; 1.80A {Geobacillus kaustophilus} PDB: 2qq3_A

Probab=95.64  E-value=0.1  Score=45.70  Aligned_cols=91  Identities=19%  Similarity=0.121  Sum_probs=69.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcccHhhH-------------HHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETEA-------------FAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G~v~aG-------------lAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|        +++.+-             +.+++.|..++.||..
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  100 (258)
T 2pbp_A           29 LSRQMVAEIVAAVEAFDRNEKVRVIVLTGRGRAFAAG--------ADIQEMAKDDPIRLEWLNQFADWDRLSIVKTPMIA  100 (258)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESTTEEECC--------CCHHHHHTCCHHHHHHHCTTHHHHHHHTCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCC--------cCHHHHhcccchhHHHHHHHHHHHHHHhCCCCEEE
Confidence            678888999998888876554455555544    455        544220             1467788889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       101 av~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  136 (258)
T 2pbp_A          101 AVNGLALGGGFELALSC--DLIVASSAAEFGFPEVNLG  136 (258)
T ss_dssp             EECSEEETHHHHHHHTS--SEEEEETTCEEECGGGGGT
T ss_pred             EEcCEEEhHHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            99999999999999999  5799999999987665544

>3lke_A Enoyl-COA hydratase; nysgrc, target 112 structural genomics, PSI-2, protein structure initiative; 1.70A {Bacillus halodurans}

Probab=95.37  E-value=0.087  Score=46.44  Aligned_cols=89  Identities=16%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc-----CCCCCCCCCCcccHhh-------------------HHHHHHHHhc
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN-----STGTTKGGEKLGYETE-------------------AFAIYDVMGY  167 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN-----SpG~~~~~~~~G~v~a-------------------GlAIyD~m~~  167 (257)
                      ++.++...+.+.|..++.++..+-|-|.=.     |.|        +++.+                   ...++..|..
T Consensus        28 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FF~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   99 (263)
T 3lke_A           28 LDAELGTSLLEAIRAGNNETSIHSIILQSKHRAYFSSG--------PRLEDLLICASDQSDVRLREVLHVLNHCVLEIFT   99 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHHCSSCCEEEEEESCTTEEECB--------SCHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEEcCCCceEecC--------cCHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHh
Confidence            778889999999888876554454444433     334        33322                   2346677888


Q ss_pred             cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          168 VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       168 i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ++.||...+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       100 ~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  140 (263)
T 3lke_A          100 SPKVTVALINGYAYGGGFNMMLAC--DRRIALRRAKFLENFHK  140 (263)
T ss_dssp             CSSEEEEEECSEEETHHHHGGGGS--SEEEEETTCEEECCHHH
T ss_pred             CCCCEEEEECCEeeHHHHHHHHHC--CEEEEcCCCEEeCchHh
Confidence            899999999999999999999999  57999999998765443

>2a7k_A CARB; crotonase, antibiotic, beta-lactam, biosynthetic protein; 2.24A {Pectobacterium carotovorum} SCOP: c.14.1.3 PDB: 2a81_A*

Probab=95.36  E-value=0.13  Score=44.75  Aligned_cols=95  Identities=13%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh----------------hHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~----------------aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+ .|... .|   +++.                ....+++.|..++.||..
T Consensus        24 l~~~~~~~l~~al~~~~~d~~vr~vVltg~-~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIA   99 (250)
T 2a7k_A           24 FSRTLETSVKDALARANADDSVRAVVVYGG-AERSFSAG---GDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIA   99 (250)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEECC-TTSCSBCB---SCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEECC-CCCCccCC---cCHHHHhhcCchhhHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            678888899998888876443333333321 33111 11   2221                123456778888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       100 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  135 (250)
T 2a7k_A          100 AVDGYAIGMGFQFALMF--DQRLMASTANFVMPELKHG  135 (250)
T ss_dssp             EECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGT
T ss_pred             EECCeEeHHHHHHHHhC--CEEEEcCCCEEeCcccccC
Confidence            99999999999999999  5799999999887665544

>1uiy_A Enoyl-COA hydratase; lyase, beta-oxidation, crotonase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.85A {Thermus thermophilus} SCOP: c.14.1.3

Probab=95.09  E-value=0.19  Score=43.73  Aligned_cols=89  Identities=13%  Similarity=0.025  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcccHhh------------------HHHHHHHHhccC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETE------------------AFAIYDVMGYVK  169 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G~v~a------------------GlAIyD~m~~i~  169 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|        +|+.+                  ...+++.|..++
T Consensus        23 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   94 (253)
T 1uiy_A           23 LSPEMALSLLQALDDLEADPGVRAVVLTGRGKAFSAG--------ADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYP   94 (253)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSCSBCC--------CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCcccC--------cChHHHHhcccCCchhHHHHHHHHHHHHHHHHhCC
Confidence            677888889888888876544444444433    333        33311                  234456677888


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .||...+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus        95 kPvIAav~G~a~GgG~~lal~c--D~~ia~~~a~f~~pe~~  133 (253)
T 1uiy_A           95 KPTVAAVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVK  133 (253)
T ss_dssp             SCEEEEECSCEETHHHHHHHTS--SEEEEETTCEEECCHHH
T ss_pred             CCEEEEECCeeeHHHHHHHHhC--CEEEEcCCcEEeCcccc
Confidence            9999999999999999999999  57999999998775543

>2bzr_A Propionyl-COA carboxylase beta chain 5; fatty acid biosynthesis, accase, ligase, transferase; 2.2A {Mycobacterium tuberculosis} PDB: 2a7s_A

Probab=94.98  E-value=0.04  Score=54.43  Aligned_cols=102  Identities=18%  Similarity=0.196  Sum_probs=76.4

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.++++.+..... ++.|-.. -.-||-.++|+||...  .-|.-|-+.+|-.+.+.+...+.|+.|+++|.++|.|.+
T Consensus       360 ~G~l~~~~a~Kaar-~i~~a~~-~~iPlv~lvDt~Gf~~G~~~E~~Gi~~~ga~~l~a~~~~~VP~isvI~g~~~Ggg~~  437 (548)
T 2bzr_A          360 AGCLDINASEKAAR-FVRTCDC-FNIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGAYC  437 (548)
T ss_dssp             GGCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHH-HHHHHHh-cCCCEEEEeeccCCCCChHHHHhhHHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH
Confidence            46777776665555 4434322 3679999999999443  223347778888899999999999999999999999887


Q ss_pred             HHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          187 LLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       187 IlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+++.  ..+..+|.|||++-+-.|.+.
T Consensus       438 am~~~~~~~d~~~awp~a~i~Vmgpega  465 (548)
T 2bzr_A          438 VMGSKDMGCDVNLAWPTAQIAVMGASGA  465 (548)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             HhccccCCCCEEEEcCCCEEEecCHHHH
Confidence            77651  135678999999999888754

>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4

Probab=94.85  E-value=0.052  Score=49.66  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhH-------HHHHHHHhcc---CCCEEEEE
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEA-------FAIYDVMGYV---KPPIFTLC  176 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aG-------lAIyD~m~~i---~~~V~Tv~  176 (257)
                      |+++.++....+.+...+..... + .-|+-++.+|+|        +++.++       -.|+..+..+   +.|+.+++
T Consensus       129 ~~ggslg~~~~~Ki~r~~e~A~~-~-~~PvI~l~~sGG--------arlqeg~~~l~~~~~i~~al~~~~~~~vP~IavV  198 (304)
T 2f9y_B          129 FMGGSMGSVVGARFVRAVEQALE-D-NCPLICFSASGG--------ARMQEALMSLMQMAKTSAALAKMQERGLPYISVL  198 (304)
T ss_dssp             STTTCBCTHHHHHHHHHHHHHHH-H-TCCEEEEEEESS--------BCGGGTHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cccCCCCHHHHHHHHHHHHHHHh-C-CCCEEEEECCCC--------cCHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            57888888888888876665444 3 578999999999        666544       2345555443   78999999


Q ss_pred             eeeehhHHHHHH-ccCCCCCeeecCCcEEeeecC
Q 025131          177 VGNAWGEAALLL-GAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       177 ~G~AaS~AslIl-aaG~kgkR~alPnS~iMIHqP  209 (257)
                      .|-|++.|+..+ ++|  +.++|.|+|+|.+--|
T Consensus       199 ~G~~~GGg~a~~a~~~--D~via~~~A~i~v~Gp  230 (304)
T 2f9y_B          199 TDPTMGGVSASFAMLG--DLNIAEPKALIGFAGP  230 (304)
T ss_dssp             EEEEEHHHHTTGGGCC--SEEEECTTCBEESSCH
T ss_pred             ECCCccHHHHHHHhcC--CEEEEeCCcEEEeecH
Confidence            999999986654 567  5689999999987544

>1sg4_A 3,2-trans-enoyl-COA isomerase, mitochondrial; crotonase fold; HET: CO8; 1.30A {Homo sapiens} SCOP: c.14.1.3 PDB: 1xx4_A

Probab=94.80  E-value=0.14  Score=44.96  Aligned_cols=92  Identities=12%  Similarity=0.020  Sum_probs=66.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEc-----CCCCCCCCCCcccHh---------------hHHHHHHHHhccCC
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYIN-----STGTTKGGEKLGYET---------------EAFAIYDVMGYVKP  170 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN-----SpG~~~~~~~~G~v~---------------aGlAIyD~m~~i~~  170 (257)
                      .++.++...+...|..++.++..+-|-|.-+     |.|        +++.               ....+++.|..++.
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k   98 (260)
T 1sg4_A           27 SLSLEFLTELVISLEKLENDKSFRGVILTSDRPGVFSAG--------LDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNL   98 (260)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEEESSTEESCCE--------ECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEEcCCCCceEcC--------cCHHHHhccCHHHHHHHHHHHHHHHHHHHcCCC
Confidence            3677888888888888876544454544443     223        2221               12355677888899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeec--CCcEEeeecCCcc
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAAL--PSSTIMIKQPIGR  212 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~al--PnS~iMIHqP~~~  212 (257)
                      ||...+-|.|.+.|.-|++++  +.|++.  ++++|-+-...-|
T Consensus        99 PvIAav~G~a~GgG~~lalac--D~~ia~~~~~a~f~~pe~~~G  140 (260)
T 1sg4_A           99 VLVSAINGACPAGGCLVALTC--DYRILADNPRYCIGLNETQLG  140 (260)
T ss_dssp             EEEEEECEEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGGGGT
T ss_pred             CEEEEECCeeehHHHHHHHhC--CEEEEecCCCCEEeCchhhhC
Confidence            999999999999999999999  579999  8998876554433

>2vx2_A Enoyl-COA hydratase domain-containing protein 3; isomerase, fatty acid metabolism, transit peptide, lipid Met crontonase, mitochondrion, CAsp; 2.3A {Homo sapiens}

Probab=94.69  E-value=0.22  Score=44.57  Aligned_cols=98  Identities=12%  Similarity=0.000  Sum_probs=65.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcc--c-------HhhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLG--Y-------ETEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G--~-------v~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|.- =++...  .       ......+++.|...+.||...+-|
T Consensus        57 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~FcaG~D-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  135 (287)
T 2vx2_A           57 LSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHD-LKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNG  135 (287)
T ss_dssp             CCHHHHHHHHHHHHTTTTCTTCCEEEEEESSSEEECCSC-CC-CCGGGCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEEECCCCCccCCcC-HHHHhcccchhHHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            678888889888887765443343333322    22300 011100  0       011235677888899999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       136 ~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lG  167 (287)
T 2vx2_A          136 LATAAGCQLVASC--DIAVASDKSSFATPGVNVG  167 (287)
T ss_dssp             EEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             EEEcHHHHHHHhC--CEEEEcCCCEEECchhhhC
Confidence            9999999999999  4799999999987665543

>1hzd_A AUH, AU-binding protein/enoyl-COA hydratase; RNA-binding protein,enoyl-COA hydratase, riken structural genomics/proteomics initiative, RSGI; 2.20A {Homo sapiens} SCOP: c.14.1.3 PDB: 2zqq_A 2zqr_A

Probab=94.60  E-value=0.19  Score=44.48  Aligned_cols=97  Identities=15%  Similarity=0.100  Sum_probs=68.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHh---------------hHHHHHHHHhccCCCEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYET---------------EAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~---------------aGlAIyD~m~~i~~~V~Tv  175 (257)
                      .++.++...+...|..++.++..+-|-|.=+.++.--.|   +++.               ....+++.|..++.||...
T Consensus        35 al~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  111 (272)
T 1hzd_A           35 SLSKNLIKMLSKAVDALKSDKKVRTIIIRSEVPGIFCAG---ADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAA  111 (272)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCSEEEEEESBTEEEECC---BCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCC---CChhhhhccChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            367888889999888887654444444443222000001   3332               1235667788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       112 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  146 (272)
T 1hzd_A          112 IDGLALGGGLELALAC--DIRVAASSAKMGLVETKLA  146 (272)
T ss_dssp             ESEEEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             eCceEEecHHHHHHhC--CEEEEcCCCEEeCchhccC
Confidence            9999999999999999  4799999999987766544

>2uzf_A Naphthoate synthase; lyase, menaquinone biosynthesis; HET: CAA; 2.9A {Staphylococcus aureus}

Probab=94.41  E-value=0.28  Score=43.34  Aligned_cols=99  Identities=15%  Similarity=0.185  Sum_probs=66.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCC-CCCCCCCC--ccc--------H--hhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINST-GTTKGGEK--LGY--------E--TEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSp-G~~~~~~~--~G~--------v--~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+.+ ....++.+  +..        +  .....+++.|..++.||...+-|
T Consensus        37 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  116 (273)
T 2uzf_A           37 FTPKTVAEMIDAFSRARDDQNVSVIVLTGEGDLAFCSGGDQKKRGHGGYVGEDQIPRLNVLDLQRLIRIIPKPVIAMVKG  116 (273)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEESSSEEEECCCCCC--------CCSSSCCCTHHHHHHHHHHSSSCEEEEECE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEEecCCCCceecCcCcHhhhccccchhhhHHHhhHHHHHHHHHhCCCCEEEEECC
Confidence            67888889999888887654445444443322 00001111  000        0  01235677888899999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       117 ~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  148 (273)
T 2uzf_A          117 YAVGGGNVLNVVC--DLTIAADNAIFGQTGPKVG  148 (273)
T ss_dssp             EEETHHHHHHHHS--SEEEEETTCEEECCGGGTT
T ss_pred             EEeehhHHHHHhC--CEEEEcCCCEEECchhhhC
Confidence            9999999999999  4799999999887655433

>1dci_A Dienoyl-COA isomerase; lyase; 1.50A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2vre_A

Probab=94.34  E-value=0.29  Score=43.16  Aligned_cols=93  Identities=12%  Similarity=0.124  Sum_probs=63.7

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh--------------------------HHHHHH
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYD  163 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a--------------------------GlAIyD  163 (257)
                      .++.++...+.+.|..++.++..+-|-|  -+.|... .|   +++.+                          ...+++
T Consensus        27 al~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (275)
T 1dci_A           27 AMNRAFWRELVECFQKISKDSDCRAVVV--SGAGKMFTSG---IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFT  101 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEE--EESTTCSBCC---BCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCccCC---cChHHHhhcccccccchhhhhhHHHHHHHHHHHHHHH
Confidence            3678888899888888775433333333  3223111 11   33211                          123456


Q ss_pred             HHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       164 ~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .|..++.||...+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       102 ~l~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  146 (275)
T 1dci_A          102 VIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVKEVD  146 (275)
T ss_dssp             HHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGGG
T ss_pred             HHHhCCCCEEEEECCeeeHHHHHHHHhC--CEEEEeCCCEEeCcccc
Confidence            6778899999999999999999999999  47999999998875543

>2ppy_A Enoyl-COA hydratase; beta-oxidation, fatty acid metabol lyase, structural genomics, NPPSFA; 2.16A {Geobacillus kaustophilus}

Probab=94.24  E-value=0.2  Score=44.03  Aligned_cols=92  Identities=12%  Similarity=-0.039  Sum_probs=66.8

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEE-c----CCCCCCCCCCcccHhh--------------H-HHHHHHHhccCC
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYI-N----STGTTKGGEKLGYETE--------------A-FAIYDVMGYVKP  170 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyI-N----SpG~~~~~~~~G~v~a--------------G-lAIyD~m~~i~~  170 (257)
                      .++.++...+.+.|..++.++..+-|-|.- +    |.|        +|+.+              . ..+++.|..++.
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  102 (265)
T 2ppy_A           31 SYDLEFYKEFNAAIDDIRFDPDIKVVIVMSDVPKFFSAG--------ADINFLRSADPRFKTQFCLFCNETLDKIARSPQ  102 (265)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEEEEECSTTEEECC--------BCHHHHTTSCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEEcCCCCeeeeC--------cCHHHHhccchhHHHHHHHHHHHHHHHHHcCCC
Confidence            367788888888888887654444444443 1    224        44321              1 356778888899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCc-EEeeecCCcc
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSS-TIMIKQPIGR  212 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS-~iMIHqP~~~  212 (257)
                      ||...+-|.|.+.|.-|++++  +-|++.+++ +|-+-...-|
T Consensus       103 PvIAav~G~a~GgG~~lalac--D~ria~~~ag~f~~pe~~~G  143 (265)
T 2ppy_A          103 VYIACLEGHTVGGGLEMALAC--DLRFMGDEAGKIGLPEVSLG  143 (265)
T ss_dssp             EEEEEECSEEETHHHHHHHTS--SEEEEETTCCCEECCGGGGT
T ss_pred             CEEEEECCEEeeHHHHHHHhC--CEEEEeCCCCEEECcccccC
Confidence            999999999999999999999  579999999 8877555433

>2q35_A CURF; crotonase, lyase; 1.65A {Lyngbya majuscula} PDB: 2q34_A 2q2x_A

Probab=94.20  E-value=0.34  Score=42.14  Aligned_cols=88  Identities=18%  Similarity=0.119  Sum_probs=64.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcccHhhH----------HHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETEA----------FAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G~v~aG----------lAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|        +++.+-          ..++..|...+.||...+-
T Consensus        27 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~   98 (243)
T 2q35_A           27 FSPSIVEGLRHCFSVVAQNQQYKVVILTGYGNYFSSG--------ASKEFLIRKTRGEVEVLDLSGLILDCEIPIIAAMQ   98 (243)
T ss_dssp             SCHHHHHHHHHHHHHHHHCTTCCEEEEECBTTEEECB--------SCHHHHHHHHTTCCCCCCCHHHHHTCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCC--------CChHHHhhccchhhHHHHHHHHHHhCCCCEEEEEc
Confidence            678888889888888876544444444322    344        554332          1346778888999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      |.|.+.|.-|++++  +-|++.++++|-+...
T Consensus        99 G~a~GgG~~lalac--D~ria~~~a~f~~pe~  128 (243)
T 2q35_A           99 GHSFGGGLLLGLYA--DFVVFSQESVYATNFM  128 (243)
T ss_dssp             SEEETHHHHHHHTS--SEEEEESSSEEECCHH
T ss_pred             CccccchHHHHHhC--CEEEEeCCCEEECCcc
Confidence            99999999999999  5799999999876543

>3pea_A Enoyl-COA hydratase/isomerase family protein; structural genomics, center for structural genomics of infec diseases, csgid; HET: FLC PG4; 1.82A {Bacillus anthracis}

Probab=94.17  E-value=0.44  Score=41.80  Aligned_cols=97  Identities=11%  Similarity=0.079  Sum_probs=66.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc---H----------hhHHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY---E----------TEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~---v----------~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|-.+..   .          .....++..|..++.||...+-
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  106 (261)
T 3pea_A           29 MSSQVMHDVTELIDQVEKDDNIRVVVI--HGEGRFFSAGADIKEFTSVTEAKQATELAQLGQVTFERVEKCSKPVIAAIH  106 (261)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCSBCCBCGGGSSTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCceeCCcCHHHHhhcCchhHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            677888888888888876443333333  3333211 1111110   0          1123467788899999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |.|.+.|.-|++++  +-|++.++++|.+....-|
T Consensus       107 G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  139 (261)
T 3pea_A          107 GAALGGGLEFAMSC--HMRFATESAKLGLPELTLG  139 (261)
T ss_dssp             SEEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             CeeehHHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            99999999999999  5799999999887655443

>1vrg_A Propionyl-COA carboxylase, beta subunit; TM0716, structural joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE; 2.30A {Thermotoga maritima} SCOP: c.14.1.4 c.14.1.4

Probab=93.90  E-value=0.12  Score=50.70  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.++++.+.....-+ .+-. ...-||-.++|+||...+  -|..|..-++-.+++.+...+.|+.|+++|.++|.|.+
T Consensus       343 ~G~~~~~~~~Kaar~i-~~a~-~~~~Plv~lvDtpG~~~G~~~E~~g~~~~~A~~~~a~~~~~vP~isvI~g~~~gGg~~  420 (527)
T 1vrg_A          343 AGVLDIDSSDKAARFI-RFLD-AFNIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAYI  420 (527)
T ss_dssp             GGCBCHHHHHHHHHHH-HHHH-HTTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHHHHH-HHHh-hcCCCeEEEecCCCCcCchhhHHhHHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHHH
Confidence            4667777665554433 3322 236799999999995532  24446777778888888889999999999999998887


Q ss_pred             HHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          187 LLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       187 IlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+++.  ..+..+|.|||++-+=.|.+.
T Consensus       421 am~~~~~~~d~~~a~p~a~~~Vm~pega  448 (527)
T 1vrg_A          421 AMGSKHLGADMVLAWPSAEIAVMGPEGA  448 (527)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             HhcCCCCCCCEEEEcCCCeEEecCHHHH
Confidence            77651  124678999999987666543

>3iav_A Propionyl-COA carboxylase complex B subunit; accase, pccase, ACC, PCC, CT, carboxyltransfe polyketide, fatty acid, PKS, FAS; 1.75A {Streptomyces coelicolor} PDB: 1xnw_A 3ib9_A* 3ibb_A 3mfm_C 1xny_A* 1xnv_A* 1xo6_A

Probab=93.79  E-value=0.17  Score=49.72  Aligned_cols=100  Identities=16%  Similarity=0.209  Sum_probs=71.1

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.++++.+..... ++.|-.. -.-||-..+|+||...+  -|.-|-+-.+-.+.+++...+.|+.|+++|.++|.|. 
T Consensus       345 ~G~l~~~~a~Kaar-fi~~c~~-~~iPlv~lvDtpGf~~G~~~E~~gi~~~~Ak~l~a~a~a~vP~itvI~g~~~GGa~-  421 (530)
T 3iav_A          345 AGCLDITASEKAAR-FVRTCDA-FNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY-  421 (530)
T ss_dssp             GGCBCHHHHHHHHH-HHHHHHH-TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH-
T ss_pred             CCCCCHHHHHHHHH-HHHHHHh-cCCCEEEEeeCCCCCccHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEeCCcchHHH-
Confidence            47788776644433 3333332 25799999999995432  2333666777888899999999999999999999555 


Q ss_pred             HHccC---CCCCeeecCCcEEeeecCCc
Q 025131          187 LLGAG---AKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       187 IlaaG---~kgkR~alPnS~iMIHqP~~  211 (257)
                      +.++|   ..+..+|.|||++-+=.|.+
T Consensus       422 ~am~~~~~~~d~~~awp~a~~~Vm~~eg  449 (530)
T 3iav_A          422 VVMGSKHLGADLNLAWPTAQIAVMGAQG  449 (530)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             HHhcCCCCCCCEEEEcCCceEecCCHHH
Confidence            55554   13578899999998876654

>3fdu_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2; 2.00A {Acinetobacter baumannii}

Probab=93.76  E-value=0.64  Score=40.97  Aligned_cols=97  Identities=11%  Similarity=0.039  Sum_probs=67.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc--------------cHhhHHHHHHHHhccCCCEEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG--------------YETEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G--------------~v~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      ++.++...+.+.|..++.++..+-|-|  .+.|... .|-.+.              .......++..|..++.||...+
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  106 (266)
T 3fdu_A           29 LYGELYLWIAKALDEADQNKDVRVVVL--RGAEHDFTAGNDMKDFMGFVQNPNAGPAGQVPPFVLLKSAARLSKPLIIAV  106 (266)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSCSBCCBCHHHHHHHHHSCCCSCGGGSHHHHHHHHHHHCCSCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEEE--ECCCCCeECCcCHHHHhhhccccchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            678888999998888876543443333  3333111 111111              11233457778889999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       107 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  140 (266)
T 3fdu_A          107 KGVAIGIGVTILLQA--DLVFADNTALFQIPFVSLG  140 (266)
T ss_dssp             CSEEETHHHHGGGGC--SEEEECTTCEEECCTTTTT
T ss_pred             CCEEehHHHHHHHhC--CEEEEcCCCEEECchhhhC
Confidence            999999999999999  5799999999987665544

>3n6r_B Propionyl-COA carboxylase, beta subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Roseobacter denitrificans}

Probab=93.66  E-value=0.16  Score=49.94  Aligned_cols=101  Identities=17%  Similarity=0.208  Sum_probs=73.3

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.++++.+.... +++.|-.. -.-||-..+|+||...+  -|.-|-+-.+-.+.+++...+.|+.|+++|.++|.|.+
T Consensus       351 ~G~l~~~~a~Kaa-rfi~lcd~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~l~a~a~a~VP~itvI~g~~~Ggg~~  428 (531)
T 3n6r_B          351 AGCLDIDSSRKAA-RFVRFCDA-FEIPLLTLIDVPGFLPGTSQEYGGVIKHGAKLLYAYGEATVPMVTVITRKAYGGAYV  428 (531)
T ss_dssp             GGCBCHHHHHHHH-HHHHHHHH-TTCCEEEEEEECSBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHHH
T ss_pred             CCCCCHHHHHHHH-HHHHHhhc-cCCCEEEEeCCCCCCCCHHHHHhhHHHHHHHHHHHHHhCCCCEEEEEcCCccchhhh
Confidence            3677777654433 33333332 25799999999995532  23346677888899999999999999999999999887


Q ss_pred             HHcc--CCCCCeeecCCcEEeeecCCc
Q 025131          187 LLGA--GAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       187 Ilaa--G~kgkR~alPnS~iMIHqP~~  211 (257)
                      .+++  -..+..+|.|||++-+=.|.+
T Consensus       429 am~~~~~~~d~~~awp~A~i~Vm~peg  455 (531)
T 3n6r_B          429 VMSSKHLRADFNYAWPTAEVAVMGAKG  455 (531)
T ss_dssp             HTTCGGGTCSEEEECTTCEEESSCHHH
T ss_pred             hccCccCCCCeEEEcCCceEecCCHHH
Confidence            7764  112567899999998776654

>3moy_A Probable enoyl-COA hydratase; ssgcid, seattle structural genomics center for infectious DI enoyl COA, actinobacteria, lyase; 1.50A {Mycobacterium smegmatis}

Probab=93.56  E-value=0.17  Score=44.56  Aligned_cols=92  Identities=14%  Similarity=0.085  Sum_probs=64.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-------------HHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------AFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------GlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|   +|+.+             ...+++.|..++.||...+-
T Consensus        34 l~~~~~~~l~~al~~~~~d~~vr~vVl--tg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  108 (263)
T 3moy_A           34 LNQTLEAEVLDAARDFDADLEIGAIVV--TGSERAFAAG---ADIAEMVTLTPHQARERNLLSGWDSLTQVRKPIVAAVA  108 (263)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--ECCSSEEEES---BCHHHHTTCCHHHHHHTTTTHHHHHHTTCCSCEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCeeCC---cChHHHhccCchhHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            577888888888888876443333332  2322110 01   33322             12467888999999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       109 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  139 (263)
T 3moy_A          109 GYALGGGCELAMLC--DLVIAADTARFGQPEIT  139 (263)
T ss_dssp             BEEETHHHHHHHHS--SEEEEETTCEEECGGGG
T ss_pred             CEeehHHHHHHHHC--CEEEecCCCEEeCcccc
Confidence            99999999999999  47999999998865544

>1mj3_A Enoyl-COA hydratase, mitochondrial; homohexamer, lyase; HET: HXC; 2.10A {Rattus norvegicus} SCOP: c.14.1.3 PDB: 2dub_A* 1dub_A* 1ey3_A* 2hw5_A*

Probab=93.49  E-value=0.16  Score=44.59  Aligned_cols=91  Identities=14%  Similarity=0.077  Sum_probs=64.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcccHhhH-------------HHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYETEA-------------FAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G~v~aG-------------lAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+...|..++.++..+-|-|.=+    |.|        +++.+-             ...++.|...+.||..
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  102 (260)
T 1mj3_A           31 LCNGLIEELNQALETFEEDPAVGAIVLTGGEKAFAAG--------ADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIA  102 (260)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEEECCSSEEECC--------BCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeeEEEEECCCCCccCC--------cChHhhhcccchHHHHHHHHHHHHHHHhCCCCEEE
Confidence            678888999998888876544444433322    234        444220             1124556677889999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       103 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  138 (260)
T 1mj3_A          103 AVNGYALGGGCELAMMC--DIIYAGEKAQFGQPEILLG  138 (260)
T ss_dssp             EECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             EECCEEEeHHHHHHHhC--CEEEEcCCCEEeCcccccC
Confidence            99999999999999999  5799999999987665433

>1on3_A Methylmalonyl-COA carboxyltransferase 12S subunit; domain duplication, multienzyme complex, transcarboxylase; HET: MCA; 1.90A {Propionibacterium freudenreichii} SCOP: c.14.1.4 c.14.1.4 PDB: 1on9_A*

Probab=93.46  E-value=0.12  Score=50.65  Aligned_cols=103  Identities=15%  Similarity=0.157  Sum_probs=73.9

Q ss_pred             eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHH
Q 025131          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (257)
Q Consensus       108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~As  185 (257)
                      .+|.++++.+.....-+..-+.  -.-||-.++|.||...+  -|.-|-+-++-.+.+.+...+.|+.|+++|.++|.|.
T Consensus       338 ~~G~~~~~~a~Kaar~i~~~~~--~~iPlv~lvDtpGf~~G~~~E~~Gi~~~~A~~l~a~a~~~vP~itvI~g~~~Ggg~  415 (523)
T 1on3_A          338 MSGCLDINASDKAAEFVNFCDS--FNIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGSY  415 (523)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHH--TTCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHh--cCCCeEEEEeCCCcCcchHHHHhhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHH
Confidence            3467887765544443322222  36799999999995532  2334777788888889999999999999999999988


Q ss_pred             HHHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          186 LLLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       186 lIlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +.+++.  ..+..+|.|||++-+=.|.+.
T Consensus       416 ~am~~~~~~~d~~~a~p~a~~~Vm~pega  444 (523)
T 1on3_A          416 LAMCNRDLGADAVYAWPSAEIAVMGAEGA  444 (523)
T ss_dssp             HTTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             HHhcccCCCCCEEEEcCCCeEEecCHHHH
Confidence            776651  124678999999987666543

>3qmj_A Enoyl-COA hydratase, ECHA8_6; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium marinum}

Probab=93.16  E-value=0.32  Score=42.45  Aligned_cols=95  Identities=12%  Similarity=0.070  Sum_probs=66.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh----------------hHHHHHHHHhccCCCEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~----------------aGlAIyD~m~~i~~~V~  173 (257)
                      .++.++...+.+.|..++.++..+-|-|  .+.|... .|   +++.                ....++..|...+.||.
T Consensus        29 al~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  103 (256)
T 3qmj_A           29 AFNEALYDATAQALLDAADDPQVAVVLL--TGSGRGFSAG---TDLAEMQARITDPNFSEGKFGFRGLIKALAGFPKPLI  103 (256)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTEEECC---BCHHHHHHHHHSSSCCCCSSHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCcccC---cCHHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            4678888899988888876544443333  2222110 01   3322                22456778889999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       104 Aav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  140 (256)
T 3qmj_A          104 CAVNGLGVGIGATILGYA--DLAFMSSTARLKCPFTSLG  140 (256)
T ss_dssp             EEECSEEETHHHHGGGGC--SEEEEETTCEEECCGGGC-
T ss_pred             EEECCeehhHHHHHHHhC--CEEEEeCCCEEECcccccC
Confidence            999999999999999999  5799999999987665544

>1pix_A Glutaconyl-COA decarboxylase A subunit; biotin-dependent ION pump, carboxyltransferase, lyase; 2.20A {Acidaminococcus fermentans} SCOP: c.14.1.4 c.14.1.4

Probab=93.13  E-value=0.3  Score=48.54  Aligned_cols=107  Identities=15%  Similarity=0.082  Sum_probs=77.5

Q ss_pred             CcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeee
Q 025131          103 NRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       103 ~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      +++...+|.++++.+.....-+ .|-.. -.-||-.++|.||...+  -|.-|-.-.|-.+.+++...+.|+.|+++|.+
T Consensus       378 ~~~~~~~G~l~~~~a~Kaarfi-~~c~~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gA~~~~a~a~a~vP~itvI~g~~  455 (587)
T 1pix_A          378 AGSVGIGGKLYRQGLVKMNEFV-TLCAR-DRLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKG  455 (587)
T ss_dssp             TTCCEETTEECHHHHHHHHHHH-HHHHH-TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEE
T ss_pred             ccccccCCCcCHHHHHHHHHHH-HHhhc-CCCCeEEEecCCCCCCcHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            3566788999987765444333 23222 35799999999995432  23346677888899999999999999999999


Q ss_pred             hhHHHHHHccCC--C--CCeeecCCcEEeeecCCc
Q 025131          181 WGEAALLLGAGA--K--GNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       181 aS~AslIlaaG~--k--gkR~alPnS~iMIHqP~~  211 (257)
                      +|.|.+.+++..  .  +..+|.|||++-+=.|.+
T Consensus       456 ~Ggg~~am~~~~~~~~~d~~~a~p~A~~~Vm~peg  490 (587)
T 1pix_A          456 TAAAHYVLGGPQGNDTNAFSIGTAATEIAVMNGET  490 (587)
T ss_dssp             ETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHH
T ss_pred             ccHHHHHhcCcccCcccceeeeccCCeEecCCHHH
Confidence            999887776521  1  346788999988765544

>1nzy_A Dehalogenase, 4-chlorobenzoyl coenzyme A dehalogenase; lyase; HET: BCA; 1.80A {Pseudomonas SP} SCOP: c.14.1.3 PDB: 1jxz_A* 1nzy_B*

Probab=93.08  E-value=0.52  Score=41.41  Aligned_cols=95  Identities=12%  Similarity=0.056  Sum_probs=63.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCc---ccH-----h-h--------HHHHHHHHhccCCCE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKL---GYE-----T-E--------AFAIYDVMGYVKPPI  172 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~---G~v-----~-a--------GlAIyD~m~~i~~~V  172 (257)
                      .++.++...+...|..++.++..+-|-|.  +.|... .|-.+   ...     . +        ...++..|..++.||
T Consensus        26 al~~~~~~~L~~al~~~~~d~~vr~vVlt--g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  103 (269)
T 1nzy_A           26 ALSVKAMQEVTDALNRAEEDDSVGAVMIT--GAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEE--ESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeeEEEEE--CCCCCcccCcCHHHHhhcccccChHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            36778888898888888765444434333  223111 11111   110     0 1        234566777889999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ...+-|.|.+.|.-|++++  +-|++.++++|-+...
T Consensus       104 IAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~  138 (269)
T 1nzy_A          104 LAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWH  138 (269)
T ss_dssp             EEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHH
T ss_pred             EEEECCeeecHHHHHHHhC--CEEEecCCCEEeCccc
Confidence            9999999999999999999  4799999999876543

>1wz8_A Enoyl-COA hydratase; lyase, crotonase, hexamer, structural genomics, riken S genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.14.1.3

Probab=93.07  E-value=0.85  Score=39.97  Aligned_cols=88  Identities=15%  Similarity=0.032  Sum_probs=64.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEc----CCCCCCCCCCcccHh-----------------hHHHHHHHHhccCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYIN----STGTTKGGEKLGYET-----------------EAFAIYDVMGYVKP  170 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyIN----SpG~~~~~~~~G~v~-----------------aGlAIyD~m~~i~~  170 (257)
                      ++.++...+.+.|..++.++..+-|-|.=+    |.|        +++.                 ....++..|..++.
T Consensus        34 l~~~~~~~L~~al~~~~~d~~vr~vVltg~g~~F~aG--------~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  105 (264)
T 1wz8_A           34 MPPALHRGLARVWRDLEAVEGVRAVLLRGEGGVFSAG--------GSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPR  105 (264)
T ss_dssp             BCHHHHHHHHHHHHHHTTCTTCSEEEEEEGGGCCBCC--------BCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCCccc--------CccccccccccchHHHHHHHHHHHHHHHHHHcCCC
Confidence            678888889888888776444444444433    334        3331                 11244566778889


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ||...+-|.|.+.|.-|++++  +-|++.++++|-+...
T Consensus       106 PvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~  142 (264)
T 1wz8_A          106 PVVAAVEKVAVGAGLALALAA--DIAVVGKGTRLLDGHL  142 (264)
T ss_dssp             CEEEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHH
T ss_pred             CEEEEECCeeechhHHHHHhC--CEEEecCCCEEeCchh
Confidence            999999999999999999999  5799999999886543

>3g64_A Putative enoyl-COA hydratase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 2.05A {Streptomyces coelicolor A3}

Probab=92.92  E-value=0.75  Score=40.64  Aligned_cols=97  Identities=14%  Similarity=0.053  Sum_probs=66.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+...|..++.++..+-|-  |.+.|... .|-.+...                .....++..|..++.||..
T Consensus        41 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  118 (279)
T 3g64_A           41 LTFEAYADLRDLLAELSRRRAVRALV--LAGEGRGFCSGGDVDEIIGATLSMDTARLLDFNRMTGQVVRAVRECPFPVIA  118 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHTTCCSEEE--EEECSSCSBCCBCTTTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHSSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCceecCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67888899999988887654444333  33334221 11111111                0123566778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+....-|
T Consensus       119 av~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  154 (279)
T 3g64_A          119 ALHGVAAGAGAVLALAA--DFRVADPSTRFAFLFTRVG  154 (279)
T ss_dssp             EECSEEETHHHHHHHHS--SEEEECTTCEEECCGGGGT
T ss_pred             EEcCeeccccHHHHHhC--CEEEEeCCCEEeCchhhcC
Confidence            99999999999999999  5799999999886655433

>4di1_A Enoyl-COA hydratase ECHA17; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, ortholog; 2.25A {Mycobacterium marinum}

Probab=92.91  E-value=0.51  Score=42.06  Aligned_cols=94  Identities=15%  Similarity=0.061  Sum_probs=66.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh---------------hHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~---------------aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.++..+-|-  |.+.|... .|   +++.               ....++..|..++.||...
T Consensus        47 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  121 (277)
T 4di1_A           47 MTRQVYREIVAAADELGRRDDIGAVV--LFGGHEIFSAG---DDMPELRTLNAPEADTAARVRLEAIDAVAAIPKPTVAA  121 (277)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEE--EECCSSCSBCC---BCHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcEEEE--EECCCCCEecC---cCcccccccChHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            67888888998888887644333222  33333111 11   2221               1245677888899999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       122 v~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lG  156 (277)
T 4di1_A          122 VTGYALGAGLTLALAA--DWRVSGDNVKFGATEILAG  156 (277)
T ss_dssp             ECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             ECCeEehhHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            9999999999999999  5799999999987655544

>2f6q_A Peroxisomal 3,2-trans-enoyl-COA isomerase; peroxisomes, fatty acid metabolism, STR genomics, structural genomics consortium, SGC; 1.95A {Homo sapiens} SCOP: c.14.1.3

Probab=92.82  E-value=0.74  Score=40.84  Aligned_cols=96  Identities=16%  Similarity=0.075  Sum_probs=65.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++ .  +-|.|-+.|... .|-.+...                .....++..|...+.||..
T Consensus        50 l~~~~~~~L~~al~~~~~d~-~--v~vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  126 (280)
T 2f6q_A           50 INTEMYHEIMRALKAASKDD-S--IITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  126 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS-C--SEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCC-C--EEEEEeCCCCCcccCCCHHHHhhcCcchhhHHHHHHHHHHHHHHHHHHcCCCCEEE
Confidence            67788888988888877543 2  255555444221 11111110                0112456778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       127 av~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G  162 (280)
T 2f6q_A          127 VVNGPAVGISVTLLGLF--DAVYASDRATFHTPFSHLG  162 (280)
T ss_dssp             EECSCEETHHHHGGGGC--SEEEEETTCEEECCTGGGT
T ss_pred             EECCeeehHHHHHHHhC--CEEEECCCcEEECchHhhC
Confidence            99999999999999999  4799999999887655444

>3p5m_A Enoyl-COA hydratase/isomerase; seattle structural genomics center for infectious disease, S coenzyme A, tuberculosis; 2.05A {Mycobacterium avium}

Probab=92.75  E-value=0.4  Score=41.95  Aligned_cols=97  Identities=15%  Similarity=0.103  Sum_probs=66.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc------HhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY------ETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~------v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      ++.++...+.+.|..++.++..+-|-|  .+.|... .|-.+..      ......++..|..++.||...+-|.|.+.|
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG  107 (255)
T 3p5m_A           30 VDTPMLEELSVHIRDAEADESVRAVLL--TGAGRAFCSGGDLTGGDTAGAADAANRVVRAITSLPKPVIAGVHGAAVGFG  107 (255)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSCSBCEECC---CHHHHHHHHHHHHHHHHHCSSCEEEEECSEEETHH
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEEEEE--ECCCCCccCCCChhhhcchHHHHHHHHHHHHHHhCCCCEEEEeCCeehhhH
Confidence            678888889988888876443333333  3334111 1111111      122346788889999999999999999999


Q ss_pred             HHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          185 ALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       185 slIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .-|++++  +-|++.++++|-+-...-|
T Consensus       108 ~~lalac--D~~ia~~~a~f~~pe~~~G  133 (255)
T 3p5m_A          108 CSLALAC--DLVVAAPASYFQLAFTRVG  133 (255)
T ss_dssp             HHHHHHS--SEEEECTTCEEECGGGGGT
T ss_pred             HHHHHHC--CEEEEcCCcEEeCcccccC
Confidence            9999999  5799999999887555433

>3kqf_A Enoyl-COA hydratase/isomerase family protein; IDP02329, structural genomic for structural genomics of infectious diseases, csgid; HET: MSE; 1.80A {Bacillus anthracis}

Probab=92.64  E-value=0.74  Score=40.46  Aligned_cols=94  Identities=15%  Similarity=0.125  Sum_probs=65.6

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCC-CCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG-~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+...|..++.++..+-|-|  .+.| ... .|   +++               .....++..|..++.||..
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  107 (265)
T 3kqf_A           33 LSLALLEELQNILTQINEEANTRVVIL--TGAGEKAFCAG---ADLKERAGMNEEQVRHAVSMIRTTMEMVEQLPQPVIA  107 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCEEEE--EESSSSEEECC---BCHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--ecCCCCeeeeC---cChHHHhccCHHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            567888888888887775433332332  3323 110 11   222               1234567788899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       108 av~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  143 (265)
T 3kqf_A          108 AINGIALGGGTELSLAC--DFRIAAESASLGLTETTLA  143 (265)
T ss_dssp             EECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             EECCeeehHHHHHHHhC--CEEEEcCCcEEECcccccC
Confidence            99999999999999999  5799999999987665544

>3he2_A Enoyl-COA hydratase ECHA6; fatty acid metabolism, lipid metabolism, lyase, structural genomics; HET: PGE; 2.30A {Mycobacterium tuberculosis}

Probab=92.62  E-value=0.68  Score=41.02  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=63.3

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc-------cHhhHHHHHHHHhccCCCEEEEEeeeehhH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG-------YETEAFAIYDVMGYVKPPIFTLCVGNAWGE  183 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G-------~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~  183 (257)
                      ++.++...+.+.|..++.+ ..+-|  .|-+.|... .|-.+.       .......++..|..++.||...+-|.|.+.
T Consensus        45 l~~~~~~~L~~al~~~~~d-~vr~v--Vltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~Gg  121 (264)
T 3he2_A           45 LNSQLVEELTQAIRKAGDG-SARAI--VLTGQGTAFCAGADLSGDAFAADYPDRLIELHKAMDASPMPVVGAINGPAIGA  121 (264)
T ss_dssp             BCHHHHHHHHHHHHCC----CCSEE--EEEESSSCSBCCBCCTTCTTGGGHHHHHHHHHHHHHHCSSCEEEEECSCEETH
T ss_pred             CCHHHHHHHHHHHHHHhhC-CceEE--EEECCCCCccCCcCCccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCcEEcc
Confidence            6788888888888877643 33333  333333211 111111       122345677888889999999999999999


Q ss_pred             HHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          184 AALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       184 AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.-|++++  +-|++.++++|.+-...
T Consensus       122 G~~lalac--D~ria~~~a~f~~pe~~  146 (264)
T 3he2_A          122 GLQLAMQC--DLRVVAPDAFFQFPTSK  146 (264)
T ss_dssp             HHHHHHHS--SEEEECTTCEEECTHHH
T ss_pred             hhHHHHhC--CEEEEcCCCEEECcccc
Confidence            99999999  57999999998765443

>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase superfamily, dimer of trimers, PSI-2, NYSGXRC, structural genomics; 2.32A {Ruegeria pomeroyi}

Probab=92.41  E-value=0.71  Score=40.54  Aligned_cols=97  Identities=14%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc------------------HhhHHHHHHHHhccCCCE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY------------------ETEAFAIYDVMGYVKPPI  172 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~------------------v~aGlAIyD~m~~i~~~V  172 (257)
                      ++.++...+.+.|..++.++..+-|  .|-+.|... .|-.+..                  ......++..|...+.||
T Consensus        30 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  107 (263)
T 3l3s_A           30 LSRAMIAALHDALRRAMGDDHVHVL--VIHGPGRIFCAGHDLKEIGRHRADPDEGRAFVTDLFEACSALMLDLAHCPKPT  107 (263)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCEE--EEECCSSEEECCSCSCCCCC-----CCSHHHHHHHHHHHHHHHHHHHTCSSCE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCCccCCcChHHHhhccccccccHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            6788888888888887754333322  333333111 1111111                  112345677888899999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ...+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       108 IAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  145 (263)
T 3l3s_A          108 IALVEGIATAAGLQLMAAC--DLAYASPAARFCLPGVQNG  145 (263)
T ss_dssp             EEEESSEEETHHHHHHHHS--SEEEECTTCEEECCTTTTT
T ss_pred             EEEECCEEEHHHHHHHHHC--CEEEecCCCEEeCchhccC
Confidence            9999999999999999999  5799999999886555443

>3i47_A Enoyl COA hydratase/isomerase (crotonase); structural genomics; 1.58A {Legionella pneumophila subsp} SCOP: c.14.1.0

Probab=92.30  E-value=1.2  Score=39.29  Aligned_cols=97  Identities=15%  Similarity=0.099  Sum_probs=65.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|-.+...               .....++..|..++.||...
T Consensus        28 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  105 (268)
T 3i47_A           28 FDNQLLTEMRIRLDSAINDTNVRVIVL--KANGKHFSAGADLTWMQSMANFTEEENLEDSLVLGNLMYSISQSPKPTIAM  105 (268)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEEEE--EECSSCSBCSBCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEE--ECCCCCeeCCCChhhhhccccccHHHHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence            678888999988888876543443333  3333211 12111111               11234667788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       106 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  140 (268)
T 3i47_A          106 VQGAAFGGGAGLAAAC--DIAIASTSARFCFSEVKLG  140 (268)
T ss_dssp             ECSEEETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             ECCEEEhHhHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            9999999999999999  5799999999876554433

>3hrx_A Probable enoyl-COA hydratase; the spiral fold, the crotonase superfamily, lyase; 1.85A {Thermus thermophilus}

Probab=92.29  E-value=1.6  Score=37.83  Aligned_cols=97  Identities=13%  Similarity=0.115  Sum_probs=68.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCc---c--------cHhhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKL---G--------YETEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~---G--------~v~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+.+.|..++.++..+-|  .|.+.|... .|-.+   +        .......++..|..++.||...+-|.
T Consensus        24 l~~~m~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  101 (254)
T 3hrx_A           24 ITGELLDALYAALKEGEEDREVRAL--LLTGAGRAFSAGQDLTEFGDRKPDYEAHLRRYNRVVEALSGLEKPLVVAVNGV  101 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCSBCCBCGGGTTTSCCCHHHHTHHHHHHHHHHHTCSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEE--EEeCCCCCcccCccHHHhcccchhhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            6788889999998888765433333  333434221 11111   0        11233567788889999999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |.+.|.-|++++  +-|++.++++|.+-...-|
T Consensus       102 a~GgG~~lalac--D~ria~~~a~f~~pe~~lG  132 (254)
T 3hrx_A          102 AAGAGMSLALWG--DLRLAAVGASFTTAFVRIG  132 (254)
T ss_dssp             EETHHHHHHTTC--SEEEEETTCEEECCGGGGT
T ss_pred             eeehhhhhhhcc--ceeeEcCCCEEEchhhCcC
Confidence            999999999999  5799999999987655444

>4eml_A Naphthoate synthase; 1,4-dihydroxy-2-naphthoyl-coenzyme A, lyase; 2.04A {Synechocystis SP}

Probab=92.25  E-value=0.52  Score=41.78  Aligned_cols=97  Identities=13%  Similarity=0.134  Sum_probs=64.5

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcC---CCC-CC-CCCCcccH-------------hhHHHHHHHHhccCCCE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINS---TGT-TK-GGEKLGYE-------------TEAFAIYDVMGYVKPPI  172 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINS---pG~-~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V  172 (257)
                      .++.++...+.+.|..++.++..+-|-|.=..   .|. .. .|-.+...             .....+++.|..++.||
T Consensus        33 al~~~~~~~L~~al~~~~~d~~vr~vVltg~~~~~~G~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv  112 (275)
T 4eml_A           33 AFRPQTVFELYDAFCNAREDNRIGVVLLTGAGPHSDGKYAFCSGGDQSVRGEGGYIDDQGTPRLNVLDLQRLIRSMPKVV  112 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTSCCEEECCBCCC--------------CCCHHHHHHHHHHSSSEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEEEEeCCCcCcCCCCceeCCcChhhhhcccccchhhHHHHHHHHHHHHHHhCCCCE
Confidence            36778888898888888764433333333200   231 10 11111111             11345778888999999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ...+-|.|.+.|.-|++++  +-|++.++++|.+-..
T Consensus       113 IAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~  147 (275)
T 4eml_A          113 IALVAGYAIGGGHVLHLVC--DLTIAADNAIFGQTGP  147 (275)
T ss_dssp             EEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHH
T ss_pred             EEEECCeeehHHHHHHHhC--CEEEEcCCCEEECccc
Confidence            9999999999999999999  5799999999986433

>3oc7_A Enoyl-COA hydratase; seattle structural genomics center for infectious disease, S non-pathogenic mycobacterium species, ortholog; 1.50A {Mycobacterium avium} SCOP: c.14.1.0

Probab=92.21  E-value=0.69  Score=40.58  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=64.7

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc-----------------HhhHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY-----------------ETEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~-----------------v~aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+.+.|..++.++..+-|-|  .+.|... .|-.+..                 ......++..|..++.||.
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  112 (267)
T 3oc7_A           35 LSTALVSQLHQGLRDASSDPAVRVVVL--AHTGGTFCAGADLSEAGSGGSPSSAYDMAVERAREMAALMRAIVESRLPVI  112 (267)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EECSSEEECCBC-----------CHHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCceeCCcCchhhhhccCchhhhhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            678888999998888876544443333  2333110 1111111                 1223446677888899999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       113 Aav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  147 (267)
T 3oc7_A          113 AAIDGHVRAGGFGLVGAC--DIAVAGPRSSFALTEAR  147 (267)
T ss_dssp             EEECSEEETTHHHHHHHS--SEEEECTTCEEECCGGG
T ss_pred             EEEcCeecccchHHHHHC--CEEEEcCCCEEeCcccc
Confidence            999999999999999999  47999999998865443

>1x0u_A Hypothetical methylmalonyl-COA decarboxylase ALPH; lyase; 2.20A {Sulfolobus tokodaii}

Probab=92.19  E-value=0.21  Score=48.91  Aligned_cols=100  Identities=16%  Similarity=0.203  Sum_probs=74.4

Q ss_pred             eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHH
Q 025131          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (257)
Q Consensus       108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~As  185 (257)
                      ++|.++++.+..+..-+. +..+ ..-||-.++||||...  .-|.-|-+..+-.+.+.+...+.|+.++++|-++|-|+
T Consensus       337 ~gG~l~~~~~~K~ar~i~-~a~~-~~~Plv~l~ds~G~~~G~~~E~~G~~~~~Ak~l~~~~~~~vP~Isvi~g~~~GGg~  414 (522)
T 1x0u_A          337 FGGSIDIDAADKAARFIR-FCDA-FNIPLISLVDTPGYVPGTDQEYKGIIRHGAKMLYAFAEATVPKITVIVRKSYGGAH  414 (522)
T ss_dssp             GGGCBCHHHHHHHHHHHH-HHHH-TTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cCCCcCHHHHHHHHHHHH-HHhh-CCCCEEEEecCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCcccHHH
Confidence            357788877777666544 3322 3579999999999432  12223555677778888888999999999999999999


Q ss_pred             HHHcc----CCCCCeeecCCcEEeeecCCc
Q 025131          186 LLLGA----GAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       186 lIlaa----G~kgkR~alPnS~iMIHqP~~  211 (257)
                      +.+++    +  +..+|.|+|++-+=.|.+
T Consensus       415 ~~~a~~a~~~--D~v~a~p~A~i~v~gpeg  442 (522)
T 1x0u_A          415 IAMSIKSLGA--DLVYAWPTAEIAVTGPEG  442 (522)
T ss_dssp             HHTCCGGGTC--SEEEECTTCEEESSCHHH
T ss_pred             HHhcccccCC--CEEEEeCCCEEEecCHHH
Confidence            88877    5  457899999998877764

>1ef8_A Methylmalonyl COA decarboxylase; lyase; 1.85A {Escherichia coli} SCOP: c.14.1.3 PDB: 1ef9_A*

Probab=92.17  E-value=0.55  Score=41.07  Aligned_cols=92  Identities=15%  Similarity=0.252  Sum_probs=62.1

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcC-CC-CCC-CCCCccc-----------HhhHHHHHHHHhccCCCEEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINS-TG-TTK-GGEKLGY-----------ETEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINS-pG-~~~-~~~~~G~-----------v~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      .++.++...+.+.|..++.++ .+-|  .|.+ .| ... .|-.+..           ......++..|...+.||...+
T Consensus        27 al~~~~~~~L~~al~~~~~d~-vr~v--Vltg~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  103 (261)
T 1ef8_A           27 ALSKVFIDDLMQALSDLNRPE-IRCI--ILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMV  103 (261)
T ss_dssp             CCCHHHHHHHHHHHHHTCSTT-CCEE--EEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCC-ceEE--EEECCCCCCeeecCcChHhhhccCchhHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            356788888888887776533 3333  3333 23 110 1111110           1123466778888999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+.
T Consensus       104 ~G~a~GgG~~lalac--D~ria~~~a~f~~p  132 (261)
T 1ef8_A          104 EGSVWGGAFEMIMSS--DLIIAASTSTFSMT  132 (261)
T ss_dssp             CSEEETHHHHHHHHS--SEEEEETTCEEECC
T ss_pred             CCEEEeHhHHHHHhC--CEEEecCCCEEeCc
Confidence            999999999999999  47999999998764

>2gtr_A CDY-like, chromodomain Y-like protein; structural genomics, structural genomics consortium, SGC, unknown function; 1.90A {Homo sapiens} PDB: 2fw2_A

Probab=91.74  E-value=0.83  Score=39.91  Aligned_cols=94  Identities=17%  Similarity=0.059  Sum_probs=64.5

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-------------------HHHHHHHHhccCC
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKP  170 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------------GlAIyD~m~~i~~  170 (257)
                      .++.++...+.+.|..++.++ .+-|  .|-+.|... .|   +|+.+                   ...++..|..++.
T Consensus        29 al~~~~~~~L~~al~~~~~d~-~r~v--vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k  102 (261)
T 2gtr_A           29 SLNPEVMREVQSALSTAAADD-SKLV--LLSAVGSVFCCG---LDFIYFIRRLTDDRKRESTKMAEAIRNFVNTFIQFKK  102 (261)
T ss_dssp             EECHHHHHHHHHHHHHHHHSS-CSCE--EEEESSSCSBCE---ECHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             CCCHHHHHHHHHHHHHHhcCC-CEEE--EEecCCCccccc---cCchhhhhccccchhhHHHHHHHHHHHHHHHHHhCCC
Confidence            357788888888888877643 3333  333333111 11   23211                   1234566778899


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ||...+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       103 PvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  142 (261)
T 2gtr_A          103 PIIVAVNGPAIGLGASILPLC--DVVWANEKAWFQTPYTTFG  142 (261)
T ss_dssp             CEEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCTTTTT
T ss_pred             CEEEEECCeEeeHHHHHHHhC--CEEEEcCCCEEeCchhccC
Confidence            999999999999999999999  4799999999987655544

>3t89_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.95A {Escherichia coli} PDB: 3t88_A 4elx_A 4elw_A 4els_A 3h02_A 2iex_A

Probab=91.64  E-value=0.76  Score=41.12  Aligned_cols=95  Identities=17%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-CC--CCCC--ccc-----------HhhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK--GGEK--LGY-----------ETEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~~--~~~~--~G~-----------v~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|. ..  ++.+  ++.           ......++..|..++.||...
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  129 (289)
T 3t89_A           52 FRPLTVKEMIQALADARYDDNIGVIIL--TGAGDKAFCSGGDQKVRGDYGGYKDDSGVHHLNVLDFQRQIRTCPKPVVAM  129 (289)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSSEEECCBCCC----------------CTHHHHHHHHHHCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--EcCCCCCccCCCChhhhhccccchhhhHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            678888889888888876544443333  33331 10  1111  011           012345777888999999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-.+.
T Consensus       130 V~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  162 (289)
T 3t89_A          130 VAGYSIGGGHVLHMMC--DLTIAADNAIFGQTGPK  162 (289)
T ss_dssp             ECSEEETHHHHHHHHS--SEEEEETTCEEECCHHH
T ss_pred             ECCEeehHHHHHHHhC--CEEEEeCCCEEeccccc
Confidence            9999999999999999  57999999999875443

>3rrv_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.45A {Mycobacterium avium subsp}

Probab=91.59  E-value=0.63  Score=41.33  Aligned_cols=89  Identities=13%  Similarity=0.075  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh-----------------hHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-----------------EAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~-----------------aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+.+.|..++.++..+-|-  |-+.|... .|   +++.                 ....++..|...+.||.
T Consensus        52 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  126 (276)
T 3rrv_A           52 VNDDLHVGLARLWQRLTDDPTARAAV--ITGAGRAFSAG---GDFGYLKELSADADLRAKTIRDGREIVLGMARCRIPVV  126 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTCSBCC---BCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCcccCC---cCHHHHhhcccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            67788899999888887644333333  33333111 11   2221                 12346677888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+-
T Consensus       127 Aav~G~a~GgG~~Lalac--D~ria~~~a~f~~p  158 (276)
T 3rrv_A          127 AAVNGPAVGLGCSLVALS--DIVYIAENAYLADP  158 (276)
T ss_dssp             EEECSCEETHHHHHHHTS--SEEEEETTCEEECC
T ss_pred             EEECceeeHHHHHHHHHC--CEEEEeCCCEEECc
Confidence            999999999999999999  57999999998753

>3myb_A Enoyl-COA hydratase; ssgcid, struct genomics, seattle structural genomics center for infectious lyase; 1.55A {Mycobacterium smegmatis}

Probab=91.57  E-value=0.61  Score=41.65  Aligned_cols=98  Identities=10%  Similarity=0.102  Sum_probs=65.9

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH-------------hhHHHHHHHHhccCCCEEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-------------TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v-------------~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      .++.++...+.+.|..++.++..+-|-  |.+.|... .|-.+...             .....++..|..++.||...+
T Consensus        49 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  126 (286)
T 3myb_A           49 ALSEAMLAALGEAFGTLAEDESVRAVV--LAASGKAFCAGHDLKEMRAEPSREYYEKLFARCTDVMLAIQRLPAPVIARV  126 (286)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEE--EEECSSCSBCCBCHHHHHSSCCHHHHHHHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCeEEEE--EECCCCCccCCcChhhhhccccHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            367888888888888877544333333  33333211 11111111             112456677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       127 ~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~lG  160 (286)
T 3myb_A          127 HGIATAAGCQLVAMC--DLAVATRDARFAVSGINVG  160 (286)
T ss_dssp             CSCEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             CCeehHHHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            999999999999999  4799999999986555433

>4fzw_C 1,2-epoxyphenylacetyl-COA isomerase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=91.26  E-value=1.1  Score=39.78  Aligned_cols=98  Identities=16%  Similarity=0.140  Sum_probs=67.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~  173 (257)
                      .++.++...+.+.|..++.++..+-  |.|-+.|... .|-.+.+.                .....++..|..++.||.
T Consensus        38 Al~~~m~~~L~~al~~~~~d~~vr~--vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~kPvI  115 (274)
T 4fzw_C           38 SFNDEMHAQLAECLKQVERDDTIRC--LLLTGAGRGFCAGQDLNDRNVDPTGPAPDLGMSVERFYNPLVRRLAKLPKPVI  115 (274)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCE--EEEEESSSCSBCCBCCC---------CCCHHHHHHHTHHHHHHHHHHCSSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceE--EEEECCCCceeCCcChHhhhccccccchHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence            3678888889988888876543332  3334444221 12111110                012346677888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       116 Aav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  152 (274)
T 4fzw_C          116 CAVNGVAAGAGATLALGG--DIVIAARSAKFVMAFSKLG  152 (274)
T ss_dssp             EEECSCEETHHHHHHHTS--SEEEEETTCEEECCGGGTT
T ss_pred             EEECCceeecCceeeecc--ceEEECCCCEEECcccCcc
Confidence            999999999999999999  5799999999987665544

>3t8b_A 1,4-dihydroxy-2-naphthoyl-COA synthase; crotonase superfamily, lyase; 1.65A {Mycobacterium tuberculosis} PDB: 3t8a_A 1rjm_A* 1rjn_A* 1q52_A 1q51_A

Probab=91.19  E-value=0.94  Score=41.60  Aligned_cols=97  Identities=13%  Similarity=0.116  Sum_probs=66.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCC-CCCC-Cc---ccHh--------------------------hHHH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT-KGGE-KL---GYET--------------------------EAFA  160 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~-~~~~-~~---G~v~--------------------------aGlA  160 (257)
                      ++.++...+.+.|..++.++..+-|-|.  +.|.. ++|. .|   +++.                          ....
T Consensus        81 l~~~~~~eL~~al~~~~~d~~vrvVVlt--G~G~~~~~~~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (334)
T 3t8b_A           81 FRPHTVDELYRVLDHARMSPDVGVVLLT--GNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILE  158 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEE--ECCCCTTTCCCEEECCSCTTTTC----------------------CCHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEEe--CCCCCcCCCCCcccCCCCHHHhhcccccccccccchhhhHHHHHHHHHHH
Confidence            6788899999988888765434433333  22310 0000 00   1111                          1234


Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCcEEeeecCCcc
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPIGR  212 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~al-PnS~iMIHqP~~~  212 (257)
                      ++..|..++.||...+-|.|.+.|.-|++++  +-|++. ++++|.+-...-|
T Consensus       159 ~~~~i~~~~kPvIAaV~G~A~GgG~~Lalac--D~riAs~~~A~f~~pe~~lG  209 (334)
T 3t8b_A          159 VQRLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVG  209 (334)
T ss_dssp             HHHHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCCTTCS
T ss_pred             HHHHHHhCCCCEEEEECCccccCcchhHhhC--CEEEEeCCCcEEECcccccC
Confidence            6778889999999999999999999999999  579999 9999988766544

>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}

Probab=91.13  E-value=0.66  Score=41.99  Aligned_cols=91  Identities=14%  Similarity=0.031  Sum_probs=63.4

Q ss_pred             eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHH-------HHHHHh---ccCCCEEEEEe
Q 025131          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFA-------IYDVMG---YVKPPIFTLCV  177 (257)
Q Consensus       108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlA-------IyD~m~---~i~~~V~Tv~~  177 (257)
                      ++|.+....++.+...+. +..+. .-|+-.+++|+|        ..+.+|+.       |...+.   ....|..+++.
T Consensus       133 ~gGs~g~~~~~K~~r~ie-~A~~~-~lPlI~l~dsgG--------ar~qEGi~sl~q~aki~~~l~~~s~~~vP~Isvv~  202 (285)
T 2f9i_B          133 RMGSMGSVIGEKICRIID-YCTEN-RLPFILFSASGG--------ARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLT  202 (285)
T ss_dssp             GGGCCCHHHHHHHHHHHH-HHHHT-TCCEEEEEEECS--------CCGGGHHHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ccCcCCHHHHHHHHHHHH-HHHHc-CCCEEEEEeCCC--------cchhhhhhhHhHHHHHHHHHHHHHcCCCCEEEEEe
Confidence            578888888887777544 33333 579999999999        66666543       333333   34679999999


Q ss_pred             eeehhHHHHHHc-cCCCCCeeecCCcEEeeecCC
Q 025131          178 GNAWGEAALLLG-AGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       178 G~AaS~AslIla-aG~kgkR~alPnS~iMIHqP~  210 (257)
                      |-+++-++..++ .|  +-.++.|+|.+-+--|.
T Consensus       203 g~~~GG~~as~a~~~--D~i~a~p~A~i~~aGP~  234 (285)
T 2f9i_B          203 HPTTGGVSASFASVG--DINLSEPKALIGFAGRR  234 (285)
T ss_dssp             EEEEHHHHTTGGGCC--SEEEECTTCBEESSCHH
T ss_pred             CCccHHHHHHhhhCC--CEEEEeCCcEEEEcCHH
Confidence            999887766543 44  45678899998876554

>3sll_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.35A {Mycobacterium abscessus}

Probab=90.88  E-value=0.68  Score=41.34  Aligned_cols=97  Identities=12%  Similarity=0.035  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc-------------------cHhhHHHHHHHHhccCCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG-------------------YETEAFAIYDVMGYVKPP  171 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G-------------------~v~aGlAIyD~m~~i~~~  171 (257)
                      ++.++...+.+.|..++.++..+-  |.|.+.|... .|-.+.                   .......++..|..++.|
T Consensus        48 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP  125 (290)
T 3sll_A           48 MAFDVMLPFKQMLVDISHDNDVRA--VVITGAGKGFCSGADQKSAGPIPHIGGLTQPTIALRSMELLDEVILTLRRMHQP  125 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHTCTTCCE--EEEEESTTCSBCC------CCCSSCTTCCHHHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCHHHHHHHHHHHHHHHcCCCeeE--EEEECCCCCeeCCcChHHHhcccccccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence            567888888888887775433332  3333444221 111110                   112234567788889999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |...+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       126 vIAav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G  164 (290)
T 3sll_A          126 VIAAINGAAIGGGLCLALAC--DVRVASQDAYFRAAGINNG  164 (290)
T ss_dssp             EEEEECSEEETHHHHHHHHS--SEEEEETTCEEECTTTTTT
T ss_pred             EEEEECCeehHHHHHHHHHC--CEEEEeCCCEEECchhccC
Confidence            99999999999999999999  5799999999876554433

>3h81_A Enoyl-COA hydratase ECHA8; niaid, decode, infectious disease, MPCS, fatty acid metaboli metabolism, lyase, structural genomics; 1.80A {Mycobacterium tuberculosis} PDB: 3q0j_A* 3pzk_A 3q0g_A*

Probab=90.70  E-value=0.52  Score=41.97  Aligned_cols=95  Identities=16%  Similarity=0.094  Sum_probs=63.7

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-------------HHHHHHHHhccCCCEEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------AFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------GlAIyD~m~~i~~~V~Tv~  176 (257)
                      .++.++...+.+.|..++.++..+-|  .|.+.|... .|   +++.+             .+..+..|..++.||...+
T Consensus        48 al~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  122 (278)
T 3h81_A           48 ALNSQVMNEVTSAATELDDDPDIGAI--IITGSAKAFAAG---ADIKEMADLTFADAFTADFFATWGKLAAVRTPTIAAV  122 (278)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEE--EEECCSSEEECC---BCSHHHHTCCHHHHHHHTTTGGGHHHHTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCeEEE--EEECCCCCeecC---cCHHHHhccChhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36778888888888877754333322  233333111 11   22211             1112566788899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      -|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       123 ~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~lG  156 (278)
T 3h81_A          123 AGYALGGGCELAMMC--DVLIAADTAKFGQPEIKLG  156 (278)
T ss_dssp             CBEEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             CCeeehHHHHHHHHC--CEEEEcCCCEEECchhhcC
Confidence            999999999999999  4799999999987655544

>4hdt_A 3-hydroxyisobutyryl-COA hydrolase; ssgcid, carnitinyl-COA dehydratase, enoyl-COA hydratase/ISOM mycobacterium thermoresistibIle; 1.60A {Mycobacterium thermoresistibile}

Probab=90.57  E-value=1.5  Score=40.45  Aligned_cols=92  Identities=11%  Similarity=0.204  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-CC-CCCCcccH------------------hhHHHHHHHHhccCCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GGEKLGYE------------------TEAFAIYDVMGYVKPP  171 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~~-~~~~~G~v------------------~aGlAIyD~m~~i~~~  171 (257)
                      ++.++...+.+.|..++.++..+-  +.|-+.|. .. .|   |++                  .....++..|..++.|
T Consensus        33 l~~~m~~~l~~al~~~~~d~~vr~--vvltg~G~~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP  107 (353)
T 4hdt_A           33 LTHGMVTTMAERLAAWENDDSVRA--VLLTGAGERGLCAG---GDVVAIYHSAKADGAEARRFWFDEYRLNAHIGRYPKP  107 (353)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCE--EEEEESSSSBSBCC---BCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHCSSC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceE--EEEEeCCCCCEecC---cCHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCCC
Confidence            678888999998888776433222  33334441 11 11   222                  1234566778889999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.+.+-|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       108 vIAav~G~a~GgG~~lal~c--D~ria~~~a~f~~pe~~  144 (353)
T 4hdt_A          108 YVSIMDGIVMGGGVGVGAHG--NVRVVTDTTKMAMPEVG  144 (353)
T ss_dssp             EEEEECBEEETHHHHHHTTS--SEEEECTTCEEECCGGG
T ss_pred             EEEEeECceeecCccccCCc--CeeccchhccccCcccc
Confidence            99999999999999999999  57999999999875443

>3rsi_A Putative enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.00A {Mycobacterium abscessus}

Probab=90.54  E-value=0.75  Score=40.36  Aligned_cols=94  Identities=14%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh------------hHHH-HHHHH-h--ccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET------------EAFA-IYDVM-G--YVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~------------aGlA-IyD~m-~--~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++..+-|-  |.+.|... .|   +++.            .... ++..| .  .++.||..
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIA  107 (265)
T 3rsi_A           33 LSTNMVSQFAAAWDEIDHDDGIRAAI--LTGAGSAYCVG---GDLSDGWMVRDGSAPPLDPATIGKGLLLSHTLTKPLIA  107 (265)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTCSEEC---C--------------CCCHHHHHHHTTSSCCCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEE--EECCCCCcccC---cCCCcccccchHHHHHHhHHHHHHHHHHhcCCCCCEEE
Confidence            67888899999888887644333332  33334111 11   1111            1123 77788 7  78899999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       108 av~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  143 (265)
T 3rsi_A          108 AVNGACLGGGCEMLQQT--DIRVSDEHATFGLPEVQRG  143 (265)
T ss_dssp             EECSCEETHHHHHHTTC--SEEEEETTCEEECGGGGGT
T ss_pred             EECCeeeHHHHHHHHHC--CEEEecCCCEEECchhccC
Confidence            99999999999999999  5799999999886554433

>3r6h_A Enoyl-COA hydratase, ECHA3; ssgcid, mycobacerium marinum, structura genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium marinum M} PDB: 4hc8_A*

Probab=90.44  E-value=1.1  Score=38.54  Aligned_cols=97  Identities=18%  Similarity=0.182  Sum_probs=65.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc------------HhhHHHHHHHHhccCCCEEEEEe
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~------------v~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      .++.++...+...|..++.+ +.+  -+.|.+.|... .|-.+..            ......++..|..++.||...+-
T Consensus        27 al~~~~~~~L~~al~~~~~d-~vr--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~  103 (233)
T 3r6h_A           27 VLGPTMQQALNEAIDAADRD-NVG--ALVIAGNHRVFSGGFDLKVLTSGEAKPAIDMLRGGFELSYRLLSYPKPVVIACT  103 (233)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH-TCS--EEEEECCSSEEECCSCHHHHC---CHHHHHHHHHHHHHHHHHHTCSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHHHhC-CCe--EEEEECCCCCccCCcChHHHhccChHHHHHHHHHHHHHHHHHHhCCCCEEEEEC
Confidence            36778888888888887753 232  23333333111 1111111            11234577788889999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       104 G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  136 (233)
T 3r6h_A          104 GHAIAMGAFLLCSG--DHRVAAHAYNVQANEVAIG  136 (233)
T ss_dssp             SEEETHHHHHHTTS--SEEEECTTCCEECCGGGGT
T ss_pred             CcchHHHHHHHHhC--CEEEEeCCcEEECchhhhC
Confidence            99999999999999  5799999999887555444

>2j5i_A P-hydroxycinnamoyl COA hydratase/lyase; vanillin, aldolase, crotonase, coenzyme-A; 1.8A {Pseudomonas fluorescens} PDB: 2j5i_B 2vss_A* 2j5i_I 2vss_F* 2vsu_A* 2vss_E* 2vsu_F* 2vsu_E* 2vsu_C*

Probab=90.35  E-value=0.5  Score=41.83  Aligned_cols=91  Identities=12%  Similarity=0.139  Sum_probs=60.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCCCCC-CCCCcccHhhH--------------H-----H-HHHHHhccC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGTTK-GGEKLGYETEA--------------F-----A-IYDVMGYVK  169 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG~~~-~~~~~G~v~aG--------------l-----A-IyD~m~~i~  169 (257)
                      ++.++...+.+.|..++.++   ++.+. |-+.|... .|   +|+.+-              +     . ++..|..++
T Consensus        33 l~~~~~~~L~~al~~~~~d~---~vr~vVltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  106 (276)
T 2j5i_A           33 MSPTLNREMIDVLETLEQDP---AAGVLVLTGAGEAWTAG---MDLKEYFREVDAGPEILQEKIRREASQWQWKLLRMYA  106 (276)
T ss_dssp             BCHHHHHHHHHHHHHHHTCT---TEEEEEEEESTTCSBCC---BCHHHHHHHHHHSCTTHHHHHHHHHHHHHTTTTTTCS
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CceEEEEECCCCCCcCC---cChhhHhhccccchhHHHHHHHHHHHHHHHHHHHhCC
Confidence            67788888888887776533   34433 33323111 11   333210              0     1 134456677


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .||...+-|.|.+.|.-|++++  +-|++.++++|-+....
T Consensus       107 kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~  145 (276)
T 2j5i_A          107 KPTIAMVNGWCFGGGFSPLVAC--DLAICADEATFGLSEIN  145 (276)
T ss_dssp             SCEEEEECSCEEGGGHHHHHHS--SEEEEETTCEEECGGGG
T ss_pred             CCEEEEECCeeehhHHHHHHhC--CEEEEcCCCEEeCcccc
Confidence            8999999999999999999999  47999999998875544

>2fbm_A Y chromosome chromodomain protein 1, telomeric IS; acetyltransferase, structural genomics, structural genomics consortium, SGC, unknown function; 2.28A {Homo sapiens} SCOP: c.14.1.3

Probab=90.33  E-value=1.3  Score=39.56  Aligned_cols=91  Identities=16%  Similarity=0.056  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-------------------HHHHHHHHhccCCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKPP  171 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------------GlAIyD~m~~i~~~  171 (257)
                      ++.++...+.+.|..++.++ .+ + |.|-+.|... .|   +|+.+                   ...++..|..++.|
T Consensus        48 l~~~m~~~L~~al~~~~~d~-~r-~-vVltg~G~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP  121 (291)
T 2fbm_A           48 LNTEVIKEIVNALNSAAADD-SK-L-VLFSAAGSVFCCG---LDFGYFVKHLRNNRNTASLEMVDTIKNFVNTFIQFKKP  121 (291)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS-CS-E-EEEEECSSCSBCC---BCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred             CCHHHHHHHHHHHHHHhcCC-Ce-E-EEEECCCCCccCC---cCHHHHHhcccccchhHHHHHHHHHHHHHHHHHhCCCC
Confidence            67888889988888887543 33 2 4444434221 12   23211                   12345667788999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |.+.+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       122 vIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~  158 (291)
T 2fbm_A          122 IVVSVNGPAIGLGASILPLC--DLVWANEKAWFQTPYTT  158 (291)
T ss_dssp             EEEEECSCEETHHHHTGGGS--SEEEEETTCEEECCHHH
T ss_pred             EEEEECCeeecHHHHHHHhC--CEEEEeCCCEEECcHHh
Confidence            99999999999999999999  47999999998865443

>3qk8_A Enoyl-COA hydratase ECHA15; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 1.60A {Mycobacterium marinum M} SCOP: c.14.1.0 PDB: 3q1t_A

Probab=90.25  E-value=0.79  Score=40.47  Aligned_cols=91  Identities=12%  Similarity=0.119  Sum_probs=64.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-----------------HHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-----------------AFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-----------------GlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+...|..++.++..+-|  .|-+.|... .|   +++.+                 ...++..|..++.||.
T Consensus        37 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  111 (272)
T 3qk8_A           37 VGPQMHRDLADVWPVIDRDPDVRVV--LVRGEGKAFSSG---GSFELIDETIGDYEGRIRIMREARDLVLNLVNLDKPVV  111 (272)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCSEE--EEEESSSCSBCE---ECHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTCCSCEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEE--EEECCCCCeeCC---cCHHHHhccccchHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            6788888999988888765433333  333334111 11   22211                 1245677888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|-+-..
T Consensus       112 Aav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~  145 (272)
T 3qk8_A          112 SAIRGPAVGAGLVVALLA--DISVASATAKIIDGHT  145 (272)
T ss_dssp             EEECSEEEHHHHHHHHHS--SEEEEETTCEEECCHH
T ss_pred             EEECCeeehHHHHHHHhC--CEEEEcCCCEEECchh
Confidence            999999999999999999  5799999999886544

>3gf3_A Glutaconyl-COA decarboxylase subunit A; sodium ION transport, biotin, glutamate fermentation, lyase; HET: COO; 1.75A {Clostridium symbiosum} PDB: 3gf7_A 3glm_A* 3gma_A*

Probab=90.25  E-value=0.58  Score=46.62  Aligned_cols=109  Identities=16%  Similarity=0.105  Sum_probs=76.5

Q ss_pred             cCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeee
Q 025131          102 KNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       102 ~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++++..++|.++++.+..... ++.|-.. -.-||-.++|.||-..+  -|.-|-+-.|-.+..++...+.|+.|+++|.
T Consensus       379 ~~~~~~~~G~l~~~~a~Kaar-fi~lcd~-f~iPlv~lvDtpGf~~G~~aE~~Gi~~~gAk~l~a~a~a~VP~itvI~g~  456 (588)
T 3gf3_A          379 KQNSVGIGGKLYRQGLIKMNE-FVTLCAR-DRIPLIWLQDTTGIDVGDEAEKAELLGLGQSLIYSIENSKLPSLEITIRK  456 (588)
T ss_dssp             SSSCEEETTEECHHHHHHHHH-HHHHHHH-TTCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHHHCSCEEEEESSE
T ss_pred             hhhhhccCCCcCHHHHHHHHH-HHHHhhh-cCCCeEEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            456778889999877554433 3333222 25799999999994431  2223667778889999999999999999999


Q ss_pred             ehhHHHHHHcc---CCC-CCeeecCCcEEeeecCCcc
Q 025131          180 AWGEAALLLGA---GAK-GNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       180 AaS~AslIlaa---G~k-gkR~alPnS~iMIHqP~~~  212 (257)
                      ++|.|.+.+++   |.. ...+|.|||++-+=.|.+.
T Consensus       457 ~~Ggg~~am~~~~~~~~~~~~~awp~A~~sVm~pEga  493 (588)
T 3gf3_A          457 ASAAAHYVLGGPQGNNTNVFSIGTGACEYYVMPGETA  493 (588)
T ss_dssp             EETTHHHHTTCTTCTTTEEEEEECTTCEEESSCHHHH
T ss_pred             ccHHHHHHhcccccCCccceEEECCCceEEeCCHHHH
Confidence            99987766554   210 1457789999887666543

>1pjh_A Enoyl-COA isomerase; ECI1P; beta-BETA-alpha spiral fold, inter-trimer contacts; 2.10A {Saccharomyces cerevisiae} SCOP: c.14.1.3 PDB: 1hno_A 1k39_A* 1hnu_A

Probab=90.23  E-value=1.8  Score=38.24  Aligned_cols=92  Identities=11%  Similarity=-0.061  Sum_probs=62.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh--------------------------HHHHHHH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYDV  164 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a--------------------------GlAIyD~  164 (257)
                      ++.++...+...|..++.++..+-|-  |-+.|... .|   +++.+                          ...++..
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~FcaG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (280)
T 1pjh_A           33 LEGEDYIYLGELLELADRNRDVYFTI--IQSSGRFFSSG---ADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDA  107 (280)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEE--EECBTTBSBCC---BCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEE--EECCCCCccCC---cCHHHHhhcccccccchhhhHHHHHHHHHHHHHHHHHH
Confidence            67888888888888877644333232  33323111 11   22110                          1245677


Q ss_pred             HhccCCCEEEEEeeeehhHHHHHHccCCCCCeeec-CCcEEeeecCC
Q 025131          165 MGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAAL-PSSTIMIKQPI  210 (257)
Q Consensus       165 m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~al-PnS~iMIHqP~  210 (257)
                      |...+.||...+-|.|.+.|.-|++++  +-|++. ++++|-+....
T Consensus       108 l~~~~kPvIAav~G~a~GgG~~Lalac--D~~ia~~~~a~f~~pe~~  152 (280)
T 1pjh_A          108 FIKHSKVLICCLNGPAIGLSAALVALC--DIVYSINDKVYLLYPFAN  152 (280)
T ss_dssp             HHHCCSEEEEEECSCEEHHHHHHHHHS--SEEEESSTTCEEECCHHH
T ss_pred             HHhCCCCEEEEECCeeeeHHHHHHHHC--CEEEEeCCCCEEeCchhh
Confidence            888899999999999999999999999  479999 99998865443

>1szo_A 6-oxocamphor hydrolase; enzyme-product complex; HET: CAX; 1.90A {Rhodococcus SP} SCOP: c.14.1.3 PDB: 1o8u_A

Probab=90.21  E-value=0.71  Score=40.51  Aligned_cols=87  Identities=15%  Similarity=0.088  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh---------------hHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET---------------EAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~---------------aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|   +|+.               ....++..|...+.||...
T Consensus        40 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  114 (257)
T 1szo_A           40 WTSTAHDELAYCFHDIACDRENKVVIL--TGTGPSFCNE---IDFTSFNLGTPHDWDEIIFEGQRLLNNLLSIEVPVIAA  114 (257)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCCEEEE--ECBTTBSBCE---ECGGGSCCSSHHHHHHHHHHHHHHHHHHHHCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--EcCCCccccC---cCchhhhcCCHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence            577888888888888776443343333  2323111 11   2211               1235667788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      +-|.|.+ |.-|++++  +-|++.++++|.+
T Consensus       115 v~G~a~G-G~~Lalac--D~ria~~~a~f~~  142 (257)
T 1szo_A          115 VNGPVTN-APEIPVMS--DIVLAAESATFQD  142 (257)
T ss_dssp             ECSCBCS-STHHHHTS--SEEEEETTCEEEC
T ss_pred             ECCchHH-HHHHHHHC--CEEEEeCCCEEec
Confidence            9999996 77788888  5799999999876

>4fzw_A 2,3-dehydroadipyl-COA hydratase; structural genomics, montreal-kingston bacterial structural initiative, BSGI, crotonase fold; 2.55A {Escherichia coli}

Probab=89.04  E-value=1.5  Score=38.42  Aligned_cols=97  Identities=10%  Similarity=0.027  Sum_probs=65.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc----------HhhHHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY----------ETEAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~----------v~aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++...+.+.|..++.++..+-  |.|-+.|... .|-.+.+          ......++..|..++.||...+-|.|
T Consensus        29 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a  106 (258)
T 4fzw_A           29 LNNALLMQLVNELEAAATDTSISV--CVITGNARFFAAGADLNEMAEKDLAATLNDTRPQLWARLQAFNKPLIAAVNGYA  106 (258)
T ss_dssp             BCHHHHHHHHHHHHHHHTCTTCCE--EEEECCSSEEEECBCHHHHHTCCHHHHHTCSHHHHHHHHHTCCSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCeEE--EEEeCCCCceeCCCchhhhccchhhhHHHhHHHHHHHHHHHCCCCEEEEEcCcc
Confidence            677888888888887775433222  2333333111 1111110          01224678889999999999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       107 ~GgG~~lalac--D~ria~~~a~f~~pe~~~G  136 (258)
T 4fzw_A          107 LGAGCELALLC--DVVVAGENARFGLPEITLG  136 (258)
T ss_dssp             ETHHHHHHHHS--SEEEEETTCEEECCGGGGT
T ss_pred             eeeeeEeeccc--ceEEECCCCEEECcccCCC
Confidence            99999999999  5799999999987655444

>3isa_A Putative enoyl-COA hydratase/isomerase; structural genomics, PSI-2, protein structure initiative, EN hydratase; 1.76A {Bordetella parapertussis}

Probab=88.96  E-value=3  Score=36.31  Aligned_cols=97  Identities=11%  Similarity=0.077  Sum_probs=66.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH------------hhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE------------TEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v------------~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+.+.|..++. +..+  -+.|-+.|... .|-.+...            .....++..|..++.||...+-|
T Consensus        31 l~~~~~~~L~~al~~~~~-~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  107 (254)
T 3isa_A           31 LSAELVEALIDGVDAAHR-EQVP--LLVFAGAGRNFSAGFDFTDYETQSEGDLLLRMVRIEMLLQRVAGSPSLTLALAHG  107 (254)
T ss_dssp             BCHHHHHHHHHHHHHHHH-TTCS--EEEEEESTTCSCCCBCCTTCTTSCHHHHHHHHHHHHHHHHHHHTCSSEEEEEECS
T ss_pred             CCHHHHHHHHHHHHHhhc-CCcE--EEEEECCCCceeeCcChHHhhccCchhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            678888889888887764 3333  23344444221 22111111            11234567788889999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCccc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRI  213 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~  213 (257)
                      .|.+.|.-|++++  +-|++.++++|-+....-|.
T Consensus       108 ~a~GgG~~lalac--D~ria~~~a~f~~pe~~~Gl  140 (254)
T 3isa_A          108 RNFGAGVDLFAAC--KWRYCTPEAGFRMPGLKFGL  140 (254)
T ss_dssp             EEETHHHHHHHHS--SEEEECTTCEEECCGGGGTC
T ss_pred             eEeecchhHHHhC--CEEEEcCCCEEECchhccCc
Confidence            9999999999999  57999999998876655443

>3u9r_B MCC beta, methylcrotonyl-COA carboxylase, beta-subunit; carboxyltransferase, beta-BETA-alpha superhelix, ligase; HET: 1PE; 1.50A {Pseudomonas aeruginosa} PDB: 3u9s_B* 3u9t_B

Probab=88.75  E-value=1.6  Score=43.15  Aligned_cols=100  Identities=17%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             cccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHHH
Q 025131          110 MSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALL  187 (257)
Q Consensus       110 g~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslI  187 (257)
                      |.++++.+.. .++++.|-.. -.-||-.++|+||...+  -|.-|-+-.+-.+..++...+.|+.|+++|-+++.|++.
T Consensus       366 G~l~~~~a~K-aarfi~~c~~-~~iPlv~lvDtpGf~~G~~~E~~Gi~~~gAk~~~a~~~a~vP~itvi~g~~~Ggg~~a  443 (555)
T 3u9r_B          366 GILFAEAAQK-GAHFIELACQ-RGIPLLFLQNITGFMVGQKYEAGGIAKHGAKLVTAVACARVPKFTVLIGGSFGAGNYG  443 (555)
T ss_dssp             SSBCHHHHHH-HHHHHHHHHH-HTCCEEEEEEECCBCCSHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEETTHHHH
T ss_pred             CccCHHHHHH-HHHHHHHHhc-CCCCEEEEecCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeCCccchhhHh
Confidence            6777776655 3344444322 25799999999994431  232366677788888999999999999999999998877


Q ss_pred             HccC--CCCCeeecCCcEEeeecCCc
Q 025131          188 LGAG--AKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       188 laaG--~kgkR~alPnS~iMIHqP~~  211 (257)
                      +++.  ..+..+|.|||++-+=-|.+
T Consensus       444 m~~~~~~~d~~~a~p~A~i~Vmgpeg  469 (555)
T 3u9r_B          444 MCGRAYDPRFLWMWPNARIGVMGGEQ  469 (555)
T ss_dssp             TTCGGGCCSEEEECTTCEEESSCHHH
T ss_pred             hcCccCCCCeEEEcCCcEEEcCCHHH
Confidence            6631  23567899999988765543

>3njd_A Enoyl-COA hydratase; ssgcid, mycobacerium smegmatis, structu genomics, seattle structural genomics center for infectious lyase; 1.75A {Mycobacterium smegmatis} PDB: 3njb_A

Probab=88.74  E-value=3  Score=37.93  Aligned_cols=48  Identities=8%  Similarity=-0.064  Sum_probs=40.9

Q ss_pred             HHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          161 IYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       161 IyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ++..|..++.||...+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       149 ~~~~l~~~~kPvIAaV~G~a~GgG~~Lalac--D~rias~~a~f~~pe~~  196 (333)
T 3njd_A          149 GFASLMHCDKPTVVKIHGYCVAGGTDIALHA--DQVIAAADAKIGYPPMR  196 (333)
T ss_dssp             HHTHHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEECTTCEEECGGGG
T ss_pred             HHHHHHhCCCCEEEEECCEEeHHHHHHHHhC--CEEEECCCCeeechhhc
Confidence            3456777899999999999999999999999  57999999998775543

>3qxz_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.35A {Mycobacterium abscessus} SCOP: c.14.1.0

Probab=88.42  E-value=0.3  Score=43.02  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=64.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH-----------hhHHHHHHHHhccCCCEEEEEeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------TEAFAIYDVMGYVKPPIFTLCVGN  179 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v-----------~aGlAIyD~m~~i~~~V~Tv~~G~  179 (257)
                      ++.++...+.+.|..++.++..+-|-|  .+.|... .|-.+...           .....++..|..++.||...+-|.
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G~  108 (265)
T 3qxz_A           31 FTVELGRQLGAAYQRLDDDPAVRVIVL--TGAPPAFCSGAQISAAAETFAAPRNPDFSASPVQPAAFELRTPVIAAVNGH  108 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTEEECCBCSTTCTTCCCCCCSSCCCSCCSSSCGGGSSSCEEEEECSE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEEE--ECCCCccccCcChHHHhhccchhHHHHHHHHHHHHHHHhCCCCEEEEECCE
Confidence            678889999999888876544443333  2333110 11110100           000344566788889999999999


Q ss_pred             ehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          180 AWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       180 AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      |.+.|.-|++++  +-|++.++++|-+....-|
T Consensus       109 a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  139 (265)
T 3qxz_A          109 AIGIGMTLALHA--DIRILAEEGRYAIPQVRFG  139 (265)
T ss_dssp             EETHHHHHHTTS--SEEEEETTCCEECCGGGGT
T ss_pred             EehHhHHHHHHC--CEEEEcCCCEEECcccccC
Confidence            999999999999  5799999999886554433

>4f47_A Enoyl-COA hydratase ECHA19; ssgcid, seattle structural genomics center for infectious DI niaid; 1.75A {Mycobacterium marinum}

Probab=88.29  E-value=0.33  Score=42.94  Aligned_cols=97  Identities=14%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh------------HHHHHHHHh---ccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE------------AFAIYDVMG---YVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a------------GlAIyD~m~---~i~~~V~Tv  175 (257)
                      ++.++...+.+.|..++.++..+-|-  |.+.|... .|-.+....+            ...+++.|.   .++.||...
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~kPvIAa  121 (278)
T 4f47_A           44 LSGEMMQIMVEAWDRVDNDPDIRCCI--LTGAGGYFCAGMDLKAATKKPPGDSFKDGSYDPSRIDALLKGRRLKKPLIAA  121 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTCCC----------------------CTTCBTTTTBSCCCSSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeeEEE--EECCCCcccCCcChHhhhccchhhhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence            67888889998888887644333333  33334211 1111111100            112334455   778899999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       122 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  156 (278)
T 4f47_A          122 VEGPAIAGGTEILQGT--DIRVAAESAKFGISEAKWS  156 (278)
T ss_dssp             ECSEEETHHHHHHTTC--SEEEEETTCEEECCGGGGT
T ss_pred             ECCEEehHHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence            9999999999999999  5799999999876554433

>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC tepraloxydim, ATP-binding, biotin, fatty acid biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae} PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A* 3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A* 1uyt_A 1uyv_A

Probab=88.00  E-value=1.3  Score=45.42  Aligned_cols=111  Identities=14%  Similarity=0.085  Sum_probs=76.8

Q ss_pred             hhccCcEEEe-CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEE
Q 025131           99 YLYKNRIVYL-GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus        99 ~Ll~~RIIfL-gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ...+++++.. +|.++++.+.... +++.+-...-.-||-..+|.||...+  -|.-|-.-.|-.+.+++...+.|+.|+
T Consensus       435 p~~~e~~~~~~gG~l~pe~a~KaA-rfI~lcd~~f~iPLv~LvDtpGf~~G~~aE~~Gi~k~gAkll~A~a~a~VP~itV  513 (758)
T 3k8x_A          435 PNSAETLIQEPGQVWHPNSAFKTA-QAINDFNNGEQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIY  513 (758)
T ss_dssp             TTCCCEEEEECTTEECHHHHHHHH-HHHHHHHHTSCCCEEECCCCCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             cchhhhHHhhcCCCCCHHHHHHHH-HHHHHhhhccCCCEEEEecCCCCCCCHHHHHccHHHHHHHHHHHHHhCCCCEEEE
Confidence            3455666554 5899988766655 34433333135799999999995532  233467778889999999999999999


Q ss_pred             Ee--eeehhHHHHHHccCC--CCC--eeecCCcEEeeecCCc
Q 025131          176 CV--GNAWGEAALLLGAGA--KGN--RAALPSSTIMIKQPIG  211 (257)
Q Consensus       176 ~~--G~AaS~AslIlaaG~--kgk--R~alPnS~iMIHqP~~  211 (257)
                      ++  |.+.+ |+.+.+++.  .+.  .+|.|+|++-+=.|.+
T Consensus       514 I~RkGe~~G-GA~~am~~~~~ad~~~v~Awp~A~isVM~pEg  554 (758)
T 3k8x_A          514 IPPTGELRG-GSWVVVDPTINADQMEMYADVNARAGVLEPQG  554 (758)
T ss_dssp             ECTTCEEET-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHH
T ss_pred             EecCCccch-HHHHHhCcccCCCHHHHhcCCCCEEEccCHHH
Confidence            99  99887 454555421  233  7888998887765543

>2x24_A Acetyl-COA carboxylase; fatty acid biosynthesis, ligase, lipid synthesis; HET: X24; 2.40A {Bos taurus} PDB: 3ff6_A* 3tdc_A*

Probab=87.55  E-value=1.1  Score=46.15  Aligned_cols=110  Identities=13%  Similarity=0.093  Sum_probs=76.3

Q ss_pred             hccCcEEE-eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEE
Q 025131          100 LYKNRIVY-LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       100 Ll~~RIIf-Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      =.++++.. ++|.++++.+.....-+..-+  .-.-||-..+|.||...  .-|.-|-+-.|-.+.+++...+.|+.|++
T Consensus       451 ~~~e~~~~~~gG~l~~~~a~KaarfI~~cd--~f~iPlv~LvDtpGf~~G~~aE~~Gi~~~gAkll~A~a~a~VP~itvI  528 (793)
T 2x24_A          451 DSEAKIIQQAGQVWFPDSAYKTAQAIKDFN--REKLPLMIFANWRGFSGGMKDMYDQVLKFGAYIVDGLRKYRQPVLIYI  528 (793)
T ss_dssp             TCCCEEEEECTTEECHHHHHHHHHHHHHHH--TTTCCEEEECCBCEECCSHHHHHTTHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             chhhhhhhhcCCcccHHHHHHHHHHHHHhc--cCCCCEEEEecCCCCCCCHHHHHhhHHHHHHHHHHHHHhcCCCEEEEE
Confidence            34556664 478999887655444333333  23689999999999553  23334667788899999999999999999


Q ss_pred             --eeeehhHHHHHHccCCCC-C---eeecCCcEEeeecCCcc
Q 025131          177 --VGNAWGEAALLLGAGAKG-N---RAALPSSTIMIKQPIGR  212 (257)
Q Consensus       177 --~G~AaS~AslIlaaG~kg-k---R~alPnS~iMIHqP~~~  212 (257)
                        .|.+.+ |+..+++..-+ .   .+|.|+|++-+=.|.+.
T Consensus       529 ~r~Ge~~G-Ga~~~~~~~~~~d~~ev~Awp~A~~~VM~pEga  569 (793)
T 2x24_A          529 PPYAEVRG-GSWAVMDTSINPLCIEMYADRESRASVLEPEGT  569 (793)
T ss_dssp             CTTCEEEH-HHHHTTCGGGSTTTEEEEEETTCEEESSCHHHH
T ss_pred             ecCCcccc-hhHHhhhcccCccHHHHhhhccCEEEecCHHHH
Confidence              898876 66666643222 2   48899999987666543

>3h0u_A Putative enoyl-COA hydratase; structural genomics, isomerase, PSI-2, protein structure initiative; 1.50A {Streptomyces avermitilis}

Probab=87.53  E-value=1.9  Score=38.55  Aligned_cols=93  Identities=13%  Similarity=0.083  Sum_probs=63.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCC--CCCCCccc---------------HhhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT--KGGEKLGY---------------ETEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~--~~~~~~G~---------------v~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|..  -.|-.+..               ......++..|..++.||..
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~G~~ff~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  108 (289)
T 3h0u_A           31 IGPEVVRDLVALLEELAHPTAPRVVIF--DSADADFFFPHVDMTKVPEYTAEAAKAGGPGDASLGMLFRKLSQLPAVTIA  108 (289)
T ss_dssp             BCHHHHHHHHHHHHHTTSTTSCSEEEE--EECSSSEEECSBCTTCHHHHHHHHHTTSSTTCCSHHHHHHHHHTCSSEEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCceEEEE--ECCCCCceeCCcCHHHHhhcCcchhhhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            677888889888887775443333333  333311  11201111               11234567788899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCC-cEEeeec
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQ  208 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPn-S~iMIHq  208 (257)
                      .+-|.|.+.|.-|++++  +-|++.++ ++|-+-.
T Consensus       109 aV~G~a~GgG~~Lalac--D~ria~~~~a~f~~pe  141 (289)
T 3h0u_A          109 KLRGRARGAGSEFLLAC--DMRFASRENAILGQPE  141 (289)
T ss_dssp             EECSEEETHHHHHHHHS--SEEEEETTTCEEECTH
T ss_pred             EECCEeehhhHHHHHhC--CEEEEeCCCcEEeCch
Confidence            99999999999999999  57999998 9987643

>3pe8_A Enoyl-COA hydratase; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid, lyase; 1.60A {Mycobacterium smegmatis} PDB: 3p85_A* 3qyr_A

Probab=87.47  E-value=1.1  Score=39.38  Aligned_cols=95  Identities=12%  Similarity=-0.021  Sum_probs=61.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh---hHHHHHHHHhccCCCEEEEEeeeehhHHHHH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET---EAFAIYDVMGYVKPPIFTLCVGNAWGEAALL  187 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~---aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslI  187 (257)
                      ++.++...+.+.|..++.++..+-|-|  .+.|... .|-.+..+.   ....+...+..++.||...+-|.|.+.|.-|
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vvl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~l~~~~kPvIAav~G~a~GgG~~l  110 (256)
T 3pe8_A           33 LSAELRSTFFRALSDAQNDDDVDVVIV--TGADPVFCAGLDLKELGDTTELPDISPKWPDMTKPVIGAINGAAVTGGLEL  110 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCSEEEE--EESTTCSBCCBCTTTC---------CCCCCCCSSCEEEEECSEEETHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEEEE--ECCCCCccCCcCHHHHhhhHHHHHHHHHHHhCCCCEEEEECCeeechHHHH
Confidence            678888999998888876443333333  3333111 121112211   1112234466777899999999999999999


Q ss_pred             HccCCCCCeeecCCcEEeeecCC
Q 025131          188 LGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       188 laaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ++++  +-|++.++++|.+....
T Consensus       111 alac--D~~ia~~~a~f~~pe~~  131 (256)
T 3pe8_A          111 ALYC--DILIASENAKFADTHAR  131 (256)
T ss_dssp             HHHS--SEEEEETTCEEECCHHH
T ss_pred             HHhC--CEEEEcCCCEEECchhh
Confidence            9999  57999999999865433

>2j5g_A ALR4455 protein; enzyme evolution, C-C bond hydrolase, hydrolase, lyase, crotonase, biocatalysis, beta-diketone; 1.46A {Anabaena SP} PDB: 2j5s_A* 2j5g_D

Probab=87.39  E-value=0.89  Score=40.14  Aligned_cols=91  Identities=12%  Similarity=0.066  Sum_probs=59.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCC--cc---cH-------hhHHHHHHHHhccCCCEEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEK--LG---YE-------TEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~--~G---~v-------~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      .++.++...+.+.|..++.++..+-|-|.  +.|...  ++.+  +.   +-       .....+++.|...+.||...+
T Consensus        47 al~~~~~~~L~~al~~~~~d~~vr~vVlt--g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav  124 (263)
T 2j5g_A           47 VFTGKTHREFPDAFYDISRDRDNRVVILT--GSGDAWMAEIDFPSLGDVTNPREWDKTYWEGKKVLQNLLDIEVPVISAV  124 (263)
T ss_dssp             EECHHHHHHHHHHHHHHHHCTTCCEEEEE--CBTTEEECEECSGGGCCTTSHHHHHHHHHHHHHHHHHHHTCCSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcEEEEEE--CCCCCcccCcCHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            36788888898888888764434433332  222110  0111  11   10       012345677888899999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEee
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMI  206 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMI  206 (257)
                      -|.|.+ |.-|++++  +-|++.++++|.+
T Consensus       125 ~G~a~G-G~~Lalac--D~ria~~~a~f~~  151 (263)
T 2j5g_A          125 NGAALL-HSEYILTT--DIILASENTVFQD  151 (263)
T ss_dssp             CSEECS-CGGGGGGC--SEEEEETTCEECC
T ss_pred             CCcchH-HHHHHHhC--CEEEEcCCCEEec
Confidence            999995 77777788  5799999999876

>3t3w_A Enoyl-COA hydratase; ssgcid, structural genomics, seattle ST genomics center for infectious disease, lyase; 1.80A {Mycobacterium thermoresistibile} PDB: 3ome_A

Probab=87.31  E-value=3.4  Score=36.51  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=64.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh-----------------hHHHHHHHHhccCCCEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET-----------------EAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~-----------------aGlAIyD~m~~i~~~V~  173 (257)
                      ++.++...+.+.|..++.++..+-  |.|.+.|... .|-.+....                 ....++..|..++.||.
T Consensus        44 l~~~~~~~L~~al~~~~~d~~vr~--vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvI  121 (279)
T 3t3w_A           44 QNPELLDELDAAWTRAAEDNDVSV--IVLRANGKHFSAGHDLRGGGPVPDKLTLEFIYAHESRRYLEYSLRWRNVPKPSI  121 (279)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCE--EEEEECSSCSBCCBCCC--------CCHHHHHHHHHHHTHHHHHHHHHCSSCEE
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEE--EEEECCCCceeeccChHhhhhcccccchHHHHHHHHHHHHHHHHHHHhCCCCEE
Confidence            678888999998888876443332  3334444221 121111110                 11235567788999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|.+-...-|
T Consensus       122 Aav~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G  158 (279)
T 3t3w_A          122 AAVQGRCISGGLLLCWPC--DLIIAAEDALFSDPVVLMD  158 (279)
T ss_dssp             EEECSEEEGGGHHHHTTS--SEEEEETTCEEECCGGGGT
T ss_pred             EEECCeEhHHHHHHHHhC--CEEEecCCCEEeCcHHhcC
Confidence            999999999999999999  5799999999876554433

>3ot6_A Enoyl-COA hydratase/isomerase family protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Pseudomonas syringae PV}

Probab=86.69  E-value=3.7  Score=35.16  Aligned_cols=93  Identities=18%  Similarity=0.131  Sum_probs=64.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh--------------HHHHHHHHhccCCCEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------AFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a--------------GlAIyD~m~~i~~~V~Tv  175 (257)
                      .++.++...+.+.|..++. |. +  -+.|-+.|... .|   +|+.+              ...++..|..++.||...
T Consensus        28 al~~~~~~~L~~al~~~~~-d~-~--~vvltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  100 (232)
T 3ot6_A           28 AISPDVIIAFNAALDQAEK-DR-A--IVIVTGQPGILSGG---YDLKVMTSSAEAAINLVAQGSTLARRMLSHPFPIIVA  100 (232)
T ss_dssp             CBCHHHHHHHHHHHHHHHH-TT-C--EEEEECBTEEEECC---BCHHHHHHCHHHHHHHHHHHHHHHHHHHTCSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CC-C--EEEEECCCCCccCC---cCHHHHhhChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3577888888888887774 32 2  33343333110 11   33322              245777888999999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCC-cEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPn-S~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++ ++|-+-...-|
T Consensus       101 v~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~~G  136 (232)
T 3ot6_A          101 CPGHAVAKGAFLLLSA--DYRIGVAGPFSIGLNEVQIG  136 (232)
T ss_dssp             CCEEEETHHHHHHTTS--SEEEEECSSCCEECCTTTTT
T ss_pred             ECCEeehHHHHHHHHC--CEEEEeCCCcEEECcccccC
Confidence            9999999999999999  57999998 78877555444

>3swx_A Probable enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium abscessus}

Probab=86.15  E-value=2.9  Score=36.49  Aligned_cols=94  Identities=12%  Similarity=0.011  Sum_probs=63.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhhH---------------HHHHHHH-hccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEA---------------FAIYDVM-GYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~aG---------------lAIyD~m-~~i~~~V~T  174 (257)
                      ++.++...+.+.|..++.++..+-|-  |-+.|... .|   +++.+-               ...++.| ...+.||..
T Consensus        33 l~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvIA  107 (265)
T 3swx_A           33 FDKTMLEELALALGEYETDTDLRAAV--LYGEGPLFTAG---LDLASVAAEIQGGASLTPEGGINPWQVDGRQLSKPLLV  107 (265)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEE--EEESTTCSBCC---BCHHHHHHHHC--CCCCCTTCCCTTCCSSCCCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhhCCCceEEE--EECCCCCcccC---cChHHHhhcccchhHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            67888899999888887644333333  33333111 11   232221               1223445 667889999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|.+-...-|
T Consensus       108 av~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~~G  143 (265)
T 3swx_A          108 AVHGKVLTLGIELALAA--DIVIADETATFAQLEVNRG  143 (265)
T ss_dssp             EECSEEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             EEcCeeehHHHHHHHHC--CEEEEcCCCEEECcccccc
Confidence            99999999999999999  5799999999987655433

>3lao_A Enoyl-COA hydratase/isomerase; alpha-beta sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Pseudomonas aeruginosa}

Probab=86.01  E-value=1.1  Score=39.01  Aligned_cols=93  Identities=12%  Similarity=0.102  Sum_probs=62.6

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh---------------HHHHHHHH-hccCCCEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE---------------AFAIYDVM-GYVKPPIF  173 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a---------------GlAIyD~m-~~i~~~V~  173 (257)
                      .++.++...+...|..++.++..+-|-|  -+.|... .|   +++.+               ....+..| ...+.||.
T Consensus        35 al~~~~~~~l~~al~~~~~d~~vr~vVl--tg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~kPvI  109 (258)
T 3lao_A           35 AFDSAMLADLALAMGEYERSEESRCAVL--FAHGEHFTAG---LDLMELAPKLAASGFRYPDGGVDPWGVVQPRRSKPLV  109 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSCSBCC---BCHHHHGGGCBTTBCCCCTTCCCTTSCSSSCCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCcEEEEE--ECCCCCeecC---cCHHHHhhccchhhHHHHHHHHHHHHHHHHhCCCCEE
Confidence            4577888888888888876544443333  3333111 11   22211               12234556 77788999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      ..+-|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       110 Aav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  144 (258)
T 3lao_A          110 VAVQGTCWTAGIELMLNA--DIAVAARGTRFAHLEVL  144 (258)
T ss_dssp             EEECSEEETHHHHHHHTS--SEEEEETTCEEECGGGG
T ss_pred             EEECCEeEhHHHHHHHhC--CEEEEcCCCEEeCcccc
Confidence            999999999999999999  57999999998875443

>3hin_A Putative 3-hydroxybutyryl-COA dehydratase; structural genomics, protein structure INI NEW YORK structural genomix research consortium; 2.00A {Rhodopseudomonas palustris}

Probab=85.70  E-value=5.7  Score=35.09  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc------------HhhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY------------ETEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~------------v~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+.+.|..++  +..+  -|.|-+.|... .|-.+..            ......+++.|..++.||...+-|
T Consensus        40 l~~~~~~~L~~al~~~d--~~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAav~G  115 (275)
T 3hin_A           40 LNDGLMAALKDCLTDIP--DQIR--AVVIHGIGDHFSAGLDLSELRERDATEGLVHSQTWHRVFDKIQYCRVPVIAALKG  115 (275)
T ss_dssp             BCHHHHHHHHHHTSSCC--TTCC--EEEEEESSSCSBCCBCGGGCCCCCHHHHHHHHHHHHHHHHHHHTCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHhC--cCce--EEEEECCCCCccCCCCHHHHhccChhhHHHHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            67778888887776662  2222  23344444221 1211111            112345677888999999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       116 ~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  147 (275)
T 3hin_A          116 AVIGGGLELACAA--HIRVAEASAYYALPEGSRG  147 (275)
T ss_dssp             EEETHHHHHHHHS--SEEEEETTCEEECGGGGGT
T ss_pred             eeehHHHHHHHhC--CEEEEcCCCEEECchhccC
Confidence            9999999999999  5799999999987665544

>3gkb_A Putative enoyl-COA hydratase; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Streptomyces avermitilis}

Probab=85.22  E-value=3.3  Score=36.86  Aligned_cols=98  Identities=10%  Similarity=0.015  Sum_probs=65.3

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCC-CCC-CCCCcccHh-----------------hHHHHHHHHhccCCC
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TTK-GGEKLGYET-----------------EAFAIYDVMGYVKPP  171 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG-~~~-~~~~~G~v~-----------------aGlAIyD~m~~i~~~  171 (257)
                      .++.++...+.+.|..++.++..+-|-  |-+.| ... .|-.+....                 ....++..|..++.|
T Consensus        31 al~~~~~~~L~~al~~~~~d~~vr~vV--ltg~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP  108 (287)
T 3gkb_A           31 VIGATMMRELRTVLTTLADDSSVRVIV--FSSADPEFFLAHVDMRIGEKMDALQELAASAPADVNVFQAVGELIRHQPQV  108 (287)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCCEEE--EEESSSSEEECCBCTTGGGSHHHHHHHHHTSCTTCCTTHHHHHHHHHCSSE
T ss_pred             CCCHHHHHHHHHHHHHHHcCCCeeEEE--EecCCCCceeCCcCHHHHhhccccchhhHHHHHHHHHHHHHHHHHHhCCCC
Confidence            356788888888888777543333232  33333 111 111111111                 123467788889999


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecC-CcEEeeecCCcc
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALP-SSTIMIKQPIGR  212 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alP-nS~iMIHqP~~~  212 (257)
                      |...+-|.|.+.|.-|++++  +-|++.+ +++|-+-...-|
T Consensus       109 vIAaV~G~a~GgG~~lalac--D~ria~~~~a~f~~pe~~lG  148 (287)
T 3gkb_A          109 TIVKLAGKARGGGAEFVAAA--DMAFAAAETAGLGQIEALMG  148 (287)
T ss_dssp             EEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECGGGGGT
T ss_pred             EEEEECCeeehHHHHHHHHC--CEEEEeCCCcEEECcccccC
Confidence            99999999999999999999  5799999 999987654433

>2w3p_A Benzoyl-COA-dihydrodiol lyase; BOXC, crotonase, ring cleaving, burkholderia xenovorans LB400 crotonase; 1.50A {Burkholderia xenovorans}

Probab=84.47  E-value=2.4  Score=41.95  Aligned_cols=89  Identities=10%  Similarity=0.021  Sum_probs=63.9

Q ss_pred             cChhHHHHHHHHHHhchhc-CCCCceEEEE-c----CCCCCCCCCCcccHhh---------------HHHHHHHH----h
Q 025131          112 FVPSVTELILAEFLYLQYE-DVEKPIYLYI-N----STGTTKGGEKLGYETE---------------AFAIYDVM----G  166 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~-d~~k~I~LyI-N----SpG~~~~~~~~G~v~a---------------GlAIyD~m----~  166 (257)
                      ++.++...+.+.|..++.+ +..+-|-|.= +    |.|        +++.+               ...++..|    .
T Consensus        55 Ls~~ml~eL~~AL~~~~~D~~~VRaVVLTGa~G~~FcAG--------aDL~el~~~~~~~~~~~~~~~~~l~~~L~~a~~  126 (556)
T 2w3p_A           55 YDLGVDIELHDAIQRIRFEHPEVRTVVLTSLKDRVFCSG--------ANIFMLGLSTHAWKVNFCKFTNETRNGLEDSSR  126 (556)
T ss_dssp             ECHHHHHHHHHHHHHHHHHCTTCCEEEEEESSSSEEECE--------ECHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCCceEEEEeCCCCCcccCC--------cCHHHHhhcccHHHHHHHHHHHHHHHHHHHHHh
Confidence            5677888888888888765 4444444443 1    344        44422               12355666    7


Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC--cEEeeecCC
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS--STIMIKQPI  210 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPn--S~iMIHqP~  210 (257)
                      .++.||...+-|.|.+.|.-|++++  +.|++.++  ++|.+-...
T Consensus       127 ~~pKPVIAAVnG~AlGGGleLALAC--D~rIAse~~~A~FglPEv~  170 (556)
T 2w3p_A          127 HSGLKFLAAVNGACAGGGYELALAC--DEIYLVDDRSSSVSLPEVP  170 (556)
T ss_dssp             HTSCEEEEEECSEEETHHHHHHHHS--SEEEEECSSSCEEECCHHH
T ss_pred             cCCCCEEEEECCeechhhHHHHHhC--CEEEEcCCCCcEEeccccc
Confidence            7889999999999999999999999  57999999  988764444

>3ju1_A Enoyl-COA hydratase/isomerase family protein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE; 2.30A {Shewanella oneidensis}

Probab=84.37  E-value=2.9  Score=39.39  Aligned_cols=94  Identities=11%  Similarity=0.153  Sum_probs=62.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEE-EcCCCC-CC-CCCCcccHh-------------------hHHHHHHHHhccC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLY-INSTGT-TK-GGEKLGYET-------------------EAFAIYDVMGYVK  169 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~Ly-INSpG~-~~-~~~~~G~v~-------------------aGlAIyD~m~~i~  169 (257)
                      ++.++...+.+.|..++.++   ++.+. |-+.|. .. .|-.+..+.                   ....++..|..++
T Consensus        66 l~~~m~~~L~~al~~~~~d~---~vr~vVltG~G~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~  142 (407)
T 3ju1_A           66 LDLDMVRAMTVQLNLWKKDP---LIACVVLDGSGEKAFCAGGDVRALYHASVAAKGQVTEVAKVFFEEEYRLDYLLHTYG  142 (407)
T ss_dssp             BCHHHHHHHHHHHHHHHHCT---TEEEEEEEESSSSEEECCBCCHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHHHhCC---CcEEEEEecCCCCcccCCCChhhhhhcccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            67788888998888777533   34433 333331 11 111111111                   1123556778889


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .||...+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       143 kPvIAaVnG~a~GgG~~Lalac--D~ria~~~a~f~~pe~~  181 (407)
T 3ju1_A          143 KPVLVWGDGIVMGGGLGLMAGA--SHKVVTETSRIAMPEVT  181 (407)
T ss_dssp             SCEEEECCSEEETHHHHHHHHC--SEEEECTTCEEECGGGG
T ss_pred             CCEEEEECCccccCcchHHhcC--CEEEEcCCCEEeChHhh
Confidence            9999999999999999999999  57999999998765443

>3bpt_A 3-hydroxyisobutyryl-COA hydrolase; coenzyme A, beta-hydroxyisobutyryl acid, querceti structural genomics consortium, SGC; HET: QUE; 1.50A {Homo sapiens}

Probab=84.19  E-value=5.4  Score=36.68  Aligned_cols=97  Identities=15%  Similarity=0.176  Sum_probs=63.8

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCC-CCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTG-TTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG-~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+...|..++.++..+-|  .|.+.| ... .|-.+...               .....++..|..++.||..
T Consensus        30 l~~~m~~~L~~al~~~~~d~~vr~v--VltG~g~~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIA  107 (363)
T 3bpt_A           30 LTLNMIRQIYPQLKKWEQDPETFLI--IIKGAGGKAFCAGGDIRVISEAEKAKQKIAPVFFREEYMLNNAVGSCQKPYVA  107 (363)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEE--EEEETTSSEEECCBCHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCeEEE--EEECCCCCcccCCcCHHHHHhhcccccHHHHHHHHHHHHHHHHHHhCCCCEEE
Confidence            5778888888888888764433322  233323 111 11111111               0112455678888999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       108 av~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~~G  143 (363)
T 3bpt_A          108 LIHGITMGGGVGLSVHG--QFRVATEKCLFAMPETAIG  143 (363)
T ss_dssp             EECSEEETHHHHTTTTS--SEEEECTTCEEECCGGGTT
T ss_pred             EECCEEehHHHHHHHhC--CEEEEcCCeEEeCCccccC
Confidence            99999999999999999  4799999999987655433

>3r9t_A ECHA1_1; ssgcid, seattle structural genomics center for infectious DI enoyl-COA hydratase, lyase; 1.75A {Mycobacterium avium subsp} SCOP: c.14.1.0 PDB: 3r9s_A 3r0o_A

Probab=84.17  E-value=2.3  Score=37.34  Aligned_cols=100  Identities=15%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             EEEeCcc-----cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-CC-CCCCcccHhh-------------HH--HHH
Q 025131          105 IVYLGMS-----FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GGEKLGYETE-------------AF--AIY  162 (257)
Q Consensus       105 IIfLgg~-----I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~~-~~~~~G~v~a-------------Gl--AIy  162 (257)
                      +|.|.-|     ++.++...+.+.|..++.++..+-|-|  -+.|. .. .|   +|+.+             .+  ..+
T Consensus        21 ~itlnrP~~~Nal~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~~~   95 (267)
T 3r9t_A           21 VITINRPEARNAINAAVSIGVGDALEEAQHDPEVRAVVL--TGAGDKSFCAG---ADLKAIARRENLYHPDHPEWGFAGY   95 (267)
T ss_dssp             EEEECCGGGTTCBCHHHHHHHHHHHHHHHHCTTCCEEEE--EESSSSEEECC---BCHHHHHTTCCCSCTTCGGGCGGGT
T ss_pred             EEEEcCCcccCCCCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCceeCC---cChHHHhcccchhhHHHHhHHHHHH
Confidence            3455544     678888999998888876543343333  33331 10 01   22211             11  011


Q ss_pred             HHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          163 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       163 D~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                       .+..++.||...+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus        96 -~~~~~~kPvIAav~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  142 (267)
T 3r9t_A           96 -VRHFIDKPTIAAVNGTALGGGTELALAS--DLVVADERAQFGLPEVKRG  142 (267)
T ss_dssp             -TTCCCSSCEEEEECSEECTHHHHHHHHS--SEEEEETTCEECCGGGGTT
T ss_pred             -HHHhCCCCEEEEECCEEEhHHHHHHHhC--CEEEEcCCCEEECcccccC
Confidence             1225778999999999999999999999  4799999999987655433

>3tlf_A Enoyl-COA hydratase/isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, otholog; 2.15A {Mycobacterium avium subsp} SCOP: c.14.1.0

Probab=83.49  E-value=1.7  Score=38.17  Aligned_cols=95  Identities=14%  Similarity=0.087  Sum_probs=60.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh-------------------HHHHHHHHhccCCC
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE-------------------AFAIYDVMGYVKPP  171 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------------GlAIyD~m~~i~~~  171 (257)
                      ++.++...+.+.|..++.++..+-|  .|-+.|... .|-.+....+                   ...++..|..++.|
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~v--Vltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kP  112 (274)
T 3tlf_A           35 LSPHMITELRAAYHEAENDDRVWLL--VVTGTGRAFCSGADVKEIPEDGKVIYERPYLSTYDQWEAPQEGTPPFRTMAKP  112 (274)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTEEECCBC--------------CTTCSGGGGSCCCTTCCCTTSCCSC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEE--EEeCCCCCcccCcCHHHHhhccccccccchhhHHHHHHHHHHHHHHHHhCCCC
Confidence            6778888999988888764433333  333333111 1111111110                   01234456677789


Q ss_pred             EEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          172 IFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       172 V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      |...+-|.|.+.|.-|++++  +-|++.++++|.+-...
T Consensus       113 vIAav~G~a~GgG~~lalac--D~~ia~~~a~f~~pe~~  149 (274)
T 3tlf_A          113 VLTAVNGICCGAGMDWVTTT--DIVIASEQATFFDPHVS  149 (274)
T ss_dssp             EEEEECSEEEGGGHHHHHHS--SEEEEETTCEEECCGGG
T ss_pred             EEEEECCeeehHHHHHHHhC--CEEEEcCCCEEECcccc
Confidence            99999999999999999999  57999999999865443

>3qre_A Enoyl-COA hydratase, ECHA12_1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.40A {Mycobacterium marinum M}

Probab=83.38  E-value=1  Score=40.50  Aligned_cols=96  Identities=13%  Similarity=0.070  Sum_probs=61.7

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh------h--------------HHHHHHHHhccC
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET------E--------------AFAIYDVMGYVK  169 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~------a--------------GlAIyD~m~~i~  169 (257)
                      .++.++...+.+.|..++.++..+-|  .|-+.|... .|-.+....      .              ...++..|..++
T Consensus        53 al~~~~~~~L~~al~~~~~d~~vr~v--Vltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  130 (298)
T 3qre_A           53 AWGPDLAAGFYAAIDRAEADPGIRVI--VLTGRGRGFCAGAYLGSADAAAGYDKTMAKAKDANLADLVGERPPHFVTMLR  130 (298)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCCEE--EEEESTTCSEECC-----------------------------CCTTGGGGSS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCceEE--EEECCCCCcccCcCHHHHhhccccccccccchhHHHHHHHHHHHHHHHHhCC
Confidence            36788889999988888764433333  333334221 111111111      0              112334567788


Q ss_pred             CCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          170 PPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       170 ~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .||...+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       131 kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~  169 (298)
T 3qre_A          131 KPVIAAINGPCVGIGLTQALMC--DVRFAAAGAKFAAVFAR  169 (298)
T ss_dssp             SCEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECCCCH
T ss_pred             CCEEEEECCceeecchHHHhhC--CEEEEcCCCEEECcccc
Confidence            8999999999999999999999  57999999998875544

>2np9_A DPGC; protein inhibitor complex, oxidoreductase; HET: YE1; 2.45A {Streptomyces toyocaensis} PDB: 2pg8_A*

Probab=82.95  E-value=7.6  Score=37.17  Aligned_cols=44  Identities=18%  Similarity=0.075  Sum_probs=38.2

Q ss_pred             ccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          167 YVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       167 ~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .++.||...+-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       282 ~~pkPvIAAVnG~A~GGG~eLALaC--DirIAae~A~Fglpev~lG  325 (440)
T 2np9_A          282 RIEKPWVAAVDGFAIGGGAQLLLVF--DRVLASSDAYFSLPAAKEG  325 (440)
T ss_dssp             EECCCEEEEECSEEETHHHHHGGGC--SEEEEETTCEEECCCTTTC
T ss_pred             cCCCCEEEEECCcccccchHHHhhC--CEEEEcCCCEEECchhccC
Confidence            5678999999999999999999999  4799999999987766544

>3hp0_A Putative polyketide biosynthesis enoyl-COA hydratase homolog PKSH; polyketide synthase, enoyl COA hydratase,isomerase; 2.32A {Bacillus subtilis}

Probab=82.55  E-value=4.2  Score=35.76  Aligned_cols=97  Identities=6%  Similarity=-0.023  Sum_probs=66.4

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCccc--------------HhhHHHHHHHHhccCCCEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGY--------------ETEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~--------------v~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      .++.++...+.+.|..++. |+.+  -+.|-+.|... .|-.+..              ......++..|..++.||...
T Consensus        30 al~~~~~~~L~~al~~~~~-d~vr--~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIAa  106 (267)
T 3hp0_A           30 TINDTLIEECLQVLNQCET-STVT--VVVLEGLPEVFCFGADFQEIYQEMKRGRKQASSQEPLYDLWMKLQTGPYVTISH  106 (267)
T ss_dssp             CBCSHHHHHHHHHHHHHHH-SSCC--EEEEECCSSCSBCCBCHHHHHHTTTTTCCSCCCCHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCCE--EEEEECCCCceecCcCHHHHHhcccChHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence            3677888888888888775 3222  23344444221 1111111              122345677788899999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +-|++.++++|-+-...-|
T Consensus       107 v~G~a~GgG~~lalac--D~ria~~~a~f~~pe~~~G  141 (267)
T 3hp0_A          107 VRGKVNAGGLGFVSAT--DIAIADQTASFSLSELLFG  141 (267)
T ss_dssp             ECSEEETTHHHHHHHS--SEEEECTTCEEECCGGGGT
T ss_pred             ECCEEeehHHHHHHhC--CEEEEcCCCEEECchhccC
Confidence            9999999999999999  5799999999887655444

>3r9q_A Enoyl-COA hydratase/isomerase; ssgcid, lyase,isomerase; 2.10A {Mycobacterium abscessus} PDB: 3qka_A

Probab=81.97  E-value=2.1  Score=37.50  Aligned_cols=93  Identities=13%  Similarity=-0.005  Sum_probs=59.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh----------HHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE----------AFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a----------GlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|-.+.....          ....+..+..++.||...+-|.|
T Consensus        35 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIAav~G~a  112 (262)
T 3r9q_A           35 VDGPTAAALLAAFTEFDADPEASVAVL--WGDNGTFCAGADLKAMGTDRGNELHPHGPGPMGPSRLRLSKPVIAAISGHA  112 (262)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EESTTCSBCCBCTTTTTSTTSCCCCTTSSCTTSSTTCCCSSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCceEEEE--ECCCCCccCCcCHHHHhccChhhHHHhhhhHHHHHHHhCCCCEEEEECCee
Confidence            678888999998888876443333333  3333211 1111111100          00122334567789999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeec
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQ  208 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHq  208 (257)
                      .+.|.-|++++  +-|++.++++|-+-.
T Consensus       113 ~GgG~~lalac--D~ria~~~a~f~~pe  138 (262)
T 3r9q_A          113 VAGGIELALWC--DLRVVEEDAVLGVFC  138 (262)
T ss_dssp             ETHHHHHHHHS--SEEEEETTCEEECTH
T ss_pred             ehhhhHHHHhC--CEEEEeCCCEEecch
Confidence            99999999999  579999999987643

>3trr_A Probable enoyl-COA hydratase/isomerase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.09A {Mycobacterium abscessus}

Probab=80.50  E-value=2.6  Score=36.82  Aligned_cols=91  Identities=14%  Similarity=0.001  Sum_probs=59.1

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhhHHH----------HHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETEAFA----------IYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~aGlA----------IyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++...+.+.|..++.++..+-|-|  -+.|... .|   +++.+-..          -+..+ ..+.||...+-|.|
T Consensus        31 l~~~~~~~L~~al~~~~~d~~vr~vVl--tg~g~~F~aG---~Dl~~~~~~~~~~~~~~~~~~~~-~~~kPvIAav~G~a  104 (256)
T 3trr_A           31 VNRAVSQGLAAAADQLDSSADLSVAII--TGAGGNFCAG---MDLKAFVSGEAVLSERGLGFTNV-PPRKPIIAAVEGFA  104 (256)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCCEEEE--EEGGGCCCCC---BCHHHHHHTCCCEETTEETTSSS-CCSSCEEEEECSBC
T ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEE--ECCCCceecC---cCHHHhccccchhhhhhhhHHHh-cCCCCEEEEECCee
Confidence            677888889988888876443333333  2223111 11   33322110          01223 55679999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      .+.|.-|++++  +-|++.++++|-+-...
T Consensus       105 ~GgG~~lalac--D~~ia~~~a~f~~pe~~  132 (256)
T 3trr_A          105 LAGGTELVLSC--DLVVAGRSAKFGIPEVK  132 (256)
T ss_dssp             CTHHHHHHHTS--SEEEEETTCEECCCGGG
T ss_pred             eechhHHHHhC--CEEEECCCCEEEehhhc
Confidence            99999999999  47999999999765444

>3m6n_A RPFF protein; enoyl-COA hydratase, lyase; 1.80A {Xanthomonas campestris PV} PDB: 3m6m_A

Probab=80.47  E-value=8.9  Score=34.31  Aligned_cols=97  Identities=15%  Similarity=0.052  Sum_probs=61.3

Q ss_pred             ccChhHHHHHHHHHHhchhc----CCCCceEEEEcCCCCCC-CCCCcccHhh-------------HHHHHHHHhc-----
Q 025131          111 SFVPSVTELILAEFLYLQYE----DVEKPIYLYINSTGTTK-GGEKLGYETE-------------AFAIYDVMGY-----  167 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~----d~~k~I~LyINSpG~~~-~~~~~G~v~a-------------GlAIyD~m~~-----  167 (257)
                      .++.++...+.+.|..++.+    |+.-.. |.|.+.|... .|-.+..+..             .-.+++.++.     
T Consensus        59 al~~~m~~eL~~al~~~~~d~~~~d~~vr~-vVltg~G~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  137 (305)
T 3m6n_A           59 CFSTRLVDDITGYQTNLGQRLNTAGVLAPH-VVLASDSDVFNLGGDLALFCQLIREGDRARLLDYAQRCVRGVHAFHVGL  137 (305)
T ss_dssp             SBCHHHHHHHHHHHHHHHHHHHHHTCSSCE-EEEEESSSSSBCCBCHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTGG
T ss_pred             CCCHHHHHHHHHHHHHHHhcccccCCCeEE-EEEECCCCCeecCcCHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhc
Confidence            38889999999998888763    222222 3334444221 1211111111             0123344432     


Q ss_pred             -cCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          168 -VKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       168 -i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                       ++.||...+-|.|.+.|.-|++++  +-|++.++++|-+-...
T Consensus       138 ~~~kPvIAaV~G~a~GgG~~Lalac--D~ria~~~a~f~~pe~~  179 (305)
T 3m6n_A          138 GARAHSIALVQGNALGGGFEAALSC--HTIIAEEGVMMGLPEVL  179 (305)
T ss_dssp             GTTCEEEEEECSCEETHHHHHHHHS--SEEEEETTCEEECGGGG
T ss_pred             CCCCCEEEEECCEeehHHHHHHHhC--CEEEEcCCCEEECchhc
Confidence             478999999999999999999999  57999999998865443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1yg6a1	183	c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Es	5e-40
d1tg6a1	193	c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Hum	2e-33
d2cbya1	179	c.14.1.1 (A:15-193) Clp protease, ClpP subunit {My	6e-32
d2f6ia1	190	c.14.1.1 (A:177-366) Clp protease, ClpP subunit {P	3e-24
d1y7oa1	192	c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Str	5e-24

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]} Length = 183

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

 Score =  134 bits (339), Expect = 5e-40
 Identities = 65/153 (42%), Positives = 91/153 (59%), Gaps = 12/153 (7%)

Query: 95  DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGY 154
           D+ S L K R+++L       +  LI+A+ L+L+ E+ EK IYLYINS G        G 
Sbjct: 8   DIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GV 59

Query: 155 ETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIE 214
            T   +IYD M ++KP + T+C+G A    A LL AGAKG R  LP+S +MI QP+G  +
Sbjct: 60  ITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQ 119

Query: 215 GQATDVEIARKEMKNVK----AELVLYTEKSPE 243
           GQATD+EI  +E+  VK      + L+T +S E
Sbjct: 120 GQATDIEIHAREILKVKGRMNELMALHTGQSLE 152

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

 Score =  118 bits (296), Expect = 2e-33
 Identities = 64/157 (40%), Positives = 85/157 (54%), Gaps = 11/157 (7%)

Query: 75  PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEK 134
           P+I +V+  T          D+ S L + RIV +      SV  L++A+ L+LQ E  +K
Sbjct: 1   PLIPIVVEQTGRGERAY---DIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKK 57

Query: 135 PIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKG 194
           PI++YINS G           T   AIYD M Y+  PI T CVG A    +LLL AG  G
Sbjct: 58  PIHMYINSPGG--------VVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPG 109

Query: 195 NRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVK 231
            R +LP+S IMI QP G   GQATD+ I  +E+  +K
Sbjct: 110 MRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLK 146

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]} Length = 179

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  113 bits (284), Expect = 6e-32
 Identities = 47/134 (35%), Positives = 63/134 (47%), Gaps = 8/134 (5%)

Query: 98  SYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETE 157
             L   RI++LG      +   + A+ L L  ED  K I LYINS G        G  + 
Sbjct: 8   ERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISA 59

Query: 158 AFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQA 217
             AIYD M      I T  +G A      LL AG KG R ALP + I++ QP+G + G A
Sbjct: 60  GMAIYDTMVLAPCDIATYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSA 119

Query: 218 TDVEIARKEMKNVK 231
            D+ I  ++   +K
Sbjct: 120 ADIAIQAEQFAVIK 133

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]} Length = 190

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

 Score = 93.6 bits (232), Expect = 3e-24
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 13/157 (8%)

Query: 92  PPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEK 151
              D+  + +K RI+YL         + ++++ LYL   +    I +YINS G       
Sbjct: 7   MKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPGG------ 59

Query: 152 LGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG 211
                E  AI D+  Y+K  I T+  G     A+++L +G KG R +LP+  IMI QP+G
Sbjct: 60  --SINEGLAILDIFNYIKSDIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLG 117

Query: 212 RIEGQATDVEIARKEMKNVKAELVLY----TEKSPED 244
              G   D+EI  KE+  +K  L  Y    T ++ E 
Sbjct: 118 NAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVET 154

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]} Length = 192

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 93.6 bits (232), Expect = 5e-24
 Identities = 52/168 (30%), Positives = 82/168 (48%), Gaps = 14/168 (8%)

Query: 77  ITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPI 136
           I +VI  TS         D+ S L K+RI+ L      ++   ++A+ L+L  +D  K I
Sbjct: 1   IPVVIEQTSRGERSY---DIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDI 57

Query: 137 YLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNR 196
           YLY+N+ G        G  +   AI D M ++K  + T+ +G A     ++  +GAKG R
Sbjct: 58  YLYVNTPG--------GSVSAGLAIVDTMNFIKADVQTIVMGMAASMGTVIASSGAKGKR 109

Query: 197 AALPSSTIMIKQPIG--RIEGQATDVEIARKEMKNVKAELV-LYTEKS 241
             LP++  MI QP+G      Q TD+ IA + +   +  L  +  E S
Sbjct: 110 FMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENS 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1tg6a1	193	Clp protease, ClpP subunit {Human (Homo sapiens),	100.0
d1y7oa1	192	Clp protease, ClpP subunit {Streptococcus pneumoni	100.0
d2cbya1	179	Clp protease, ClpP subunit {Mycobacterium tubercul	100.0
d1yg6a1	183	Clp protease, ClpP subunit {Escherichia coli [TaxI	100.0
d2f6ia1	190	Clp protease, ClpP subunit {Plasmodium falciparum	100.0
d1vrga2	264	Propionyl-CoA carboxylase complex B subunit, PccB	95.88
d1on3a2	264	Methylmalonyl-CoA carboxyltransferase (transcarbox	95.46
d2f9ya1	316	Acetyl-coenzyme A carboxylase carboxyl transferase	95.31
d2a7sa2	271	Propionyl-CoA carboxylase complex B subunit, PccB	95.15
d1xnya2	263	Propionyl-CoA carboxylase complex B subunit, PccB	95.08
d1dcia_	275	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	93.49
d1pixa3	299	Glutaconyl-CoA decarboxylase A subunit {Acidaminoc	92.93
d2a7ka1	230	Carbapenem biosynthes protein CarB {Pectobacterium	92.68
d2f6qa1	245	Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (	92.44
d1uiya_	253	Enoyl-CoA hydratase (crotonase) {Thermus thermophi	92.32
d1nzya_	269	4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp.,	91.81
d1mj3a_	260	Enoyl-CoA hydratase (crotonase) {Rat (Rattus norve	91.27
d1hzda_	266	AUH protein {Human (Homo sapiens) [TaxId: 9606]}	91.27
d1sg4a1	249	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	90.66
d1wz8a1	263	Probable enoyl-CoA hydratase TTHA0218 {Thermus the	89.1
d1wdka4	310	Fatty oxidation complex alpha subunit, N-terminal	88.8
d2fw2a1	258	Chromodomain protein CDY2A {Human (Homo sapiens) [	88.38
d1ef8a_	261	Methylmalonyl CoA decarboxylase {Escherichia coli	88.24
d1pjha_	266	Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA iso	86.37
d1q52a_	297	Naphthoate synthase MenB {Mycobacterium tuberculos	84.28
d1uyra2	404	Acetyl-coenzyme A carboxylase {Baker's yeast (Sacc	83.35

>d1tg6a1 c.14.1.1 (A:1-193) Clp protease, ClpP subunit {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=3.3e-51  Score=353.32  Aligned_cols=169  Identities=40%  Similarity=0.619  Sum_probs=154.2

Q ss_pred             eeeeeeecccCCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccH
Q 025131           76 VITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYE  155 (257)
Q Consensus        76 ~~~~~ip~~~~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v  155 (257)
                      ++|+++|   .++.+++++||||+||++|||||+|+|+++++++++++|+||+.+++++||+|||||||        |+|
T Consensus         2 ~~p~~~~---~~~~~~~~~Di~s~l~~~Riifl~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v   70 (193)
T d1tg6a1           2 LIPIVVE---QTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMYINSPG--------GVV   70 (193)
T ss_dssp             CCCBCC------------CBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCH
T ss_pred             CCCEEEe---ecCCCchhhhHhHHHhccCEEEECCEEchHHHHHHHHHHHHhcccCCCcEEEEEeecCc--------ccH
Confidence            4566665   46667889999999999999999999999999999999999999999999999999999        999


Q ss_pred             hhHHHHHHHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH
Q 025131          156 TEAFAIYDVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV  235 (257)
Q Consensus       156 ~aGlAIyD~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~  235 (257)
                      ++|++|||+|++++++|+|+|.|+|+|||++|++||+||+|+++|||++|||||+++++|+++|++++++|++++++.+.
T Consensus        71 ~~g~~i~d~i~~~~~~V~tv~~G~aaS~a~~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~di~~~~~el~~~~~~i~  150 (193)
T d1tg6a1          71 TAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLPNSRIMIHQPSGGARGQATDIAIQAEEIMKLKKQLY  150 (193)
T ss_dssp             HHHHHHHHHHHHSCSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCCCCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCceEEEEccchHHHHHHHhhcCccCccccCcccHHHhcCCccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HHHHhcCCCHHHHHHHHhhc
Q 025131          236 -LYTEKSPEDHGVVSDLKKAQ  255 (257)
Q Consensus       236 -iY~erTg~~~evI~~l~r~~  255 (257)
                       +|+++||++.++++++++..
T Consensus       151 ~i~a~~Tg~~~~~i~~~~~rD  171 (193)
T d1tg6a1         151 NIYAKHTKQSLQVIESAMERD  171 (193)
T ss_dssp             HHHHHHHCCCHHHHHHHHSSC
T ss_pred             HHHHHHcCCCHHHHHHHhccC
Confidence             99999999999999777643

>d1y7oa1 c.14.1.1 (A:2-193) Clp protease, ClpP subunit {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=6.9e-49  Score=337.70  Aligned_cols=161  Identities=30%  Similarity=0.488  Sum_probs=138.3

Q ss_pred             CCCCCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHH
Q 025131           86 GTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVM  165 (257)
Q Consensus        86 ~~~~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m  165 (257)
                      +++.+++++|||++||++|||||+|+|++++++.++++|+||+.+++++||+|||||||        |+|++|++|||+|
T Consensus         7 ~~~~~~~~~di~s~Ll~~rii~l~g~I~~~~~~~~~~~l~~l~~~~~~~~I~l~InS~G--------G~v~~glai~d~i   78 (192)
T d1y7oa1           7 QTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDSTKDIYLYVNTPG--------GSVSAGLAIVDTM   78 (192)
T ss_dssp             -------CEEHHHHHHHTTEEEEESCBCHHHHHHHHHHHHHHHHHCTTSCEEEEEEECC--------BCHHHHHHHHHHH
T ss_pred             eCCCCcchhhhhhHHhccCEEEECCEEchHHHHHHHHHHHHhhhhcccCceeeeecCCC--------CCHHHHHHHHHHH
Confidence            46667888999999999999999999999999999999999999999999999999999        9999999999999


Q ss_pred             hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccC--HHHHHHHHHHHHHHHHHHH-HHHHhcC
Q 025131          166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQ--ATDVEIARKEMKNVKAELV-LYTEKSP  242 (257)
Q Consensus       166 ~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~Gq--AsDi~i~a~el~~~k~~l~-iY~erTg  242 (257)
                      ++++++|+|+|.|+|+|||++|++||+||+|+++|||++|||||+++.+|+  +.|++++++|+.++++.+. +|+++||
T Consensus        79 ~~~~~~v~t~~~G~aaS~as~il~aG~~g~R~~~pns~~miHq~~~~~~G~~~~~~~~~~~~el~~~~~~i~~i~~~~tg  158 (192)
T d1y7oa1          79 NFIKADVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAPEHLLKTRNTLEKILAENSG  158 (192)
T ss_dssp             HHSSSCEEEEEEEEEETHHHHHHTTSCTTCEEECTTCEEECCCCC--------------CHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhcCcceEEEeccccCCccceeeeecCCCccccchHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999999885  6688999999999999998 9999999


Q ss_pred             CCHHHHHHHHhh
Q 025131          243 EDHGVVSDLKKA  254 (257)
Q Consensus       243 ~~~evI~~l~r~  254 (257)
                      ++.+++.++++.
T Consensus       159 ~~~~~i~~~~~r  170 (192)
T d1y7oa1         159 QSMEKVHADAER  170 (192)
T ss_dssp             CCHHHHHHHHHS
T ss_pred             CCHHHHHHhhcC
Confidence            999999866654

>d2cbya1 c.14.1.1 (A:15-193) Clp protease, ClpP subunit {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.2e-46  Score=315.08  Aligned_cols=154  Identities=32%  Similarity=0.490  Sum_probs=139.4

Q ss_pred             cchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCCCEE
Q 025131           94 PDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus        94 ~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~~V~  173 (257)
                      -+||++||++|||||+|+||++++++++++|++|+.+++.+||+|||||||        |+|++|++|||+|++++++|+
T Consensus         4 ~~i~~~l~~~rii~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~gl~i~d~i~~~~~~v~   75 (179)
T d2cbya1           4 DSVYERLLSERIIFLGSEVNDEIANRLCAQILLLAAEDASKDISLYINSPG--------GSISAGMAIYDTMVLAPCDIA   75 (179)
T ss_dssp             HHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHHHCSSCEE
T ss_pred             cHHHHHHHhCCEEEECCEECHHHHHHHHHHHHHHhccCCCCeEEEEeeCCC--------CCHHHHHHHHHHHHhhcccee
Confidence            479999999999999999999999999999999999999999999999999        999999999999999999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHHHHH
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVSDLK  252 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~~l~  252 (257)
                      |+|.|.|+|||++|+++|+||+|+++|||++|||||+++++|++.|++++++|++++++.+. +|+++||++.+++++++
T Consensus        76 t~~~G~aaS~a~~il~ag~k~~R~~~~~s~~miH~~~~~~~G~~~~i~~~~~~l~~~~~~i~~i~a~~tg~~~~~i~~~~  155 (179)
T d2cbya1          76 TYAMGMAASMGEFLLAAGTKGKRYALPHARILMHQPLGGVTGSAADIAIQAEQFAVIKKEMFRLNAEFTGQPIERIEADS  155 (179)
T ss_dssp             EEEEEEEETHHHHHHHTSCTTCEEECTTCEEECCCC----------CHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             eehhhhhhhHHHHHHHcCCCCceEECCchHhhcCCCchhcCCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999 99999999999998777


Q ss_pred             hhc
Q 025131          253 KAQ  255 (257)
Q Consensus       253 r~~  255 (257)
                      +..
T Consensus       156 ~~d  158 (179)
T d2cbya1         156 DRD  158 (179)
T ss_dssp             HTT
T ss_pred             cCC
Confidence            643

>d1yg6a1 c.14.1.1 (A:11-193) Clp protease, ClpP subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-45  Score=313.50  Aligned_cols=159  Identities=39%  Similarity=0.630  Sum_probs=153.7

Q ss_pred             CCCCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhcc
Q 025131           89 WEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYV  168 (257)
Q Consensus        89 ~~~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i  168 (257)
                      ++++.+||||+|+++|||||+|+|++++++.++++|++|+.+++++||+|||||||        |++++|++|||+|+++
T Consensus         2 ~~~~~~di~s~L~~~riI~l~g~I~~~~~~~~i~~l~~l~~~~~~~~I~l~InS~G--------G~v~~g~~i~d~i~~~   73 (183)
T d1yg6a1           2 RGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPG--------GVITAGMSIYDTMQFI   73 (183)
T ss_dssp             SSCCCCBHHHHHHTTTEEEEESSBCHHHHHHHHHHHHHHHHHCSSSCEEEEEEECC--------BCHHHHHHHHHHHHHS
T ss_pred             CccchhhHhHHHhccCEEEECCEECHHHHHHHHHHHHHhhhhccCCceEEEEeCCC--------ccHHHHHHHHHHHHhC
Confidence            57889999999999999999999999999999999999999999999999999999        9999999999999999


Q ss_pred             CCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHH
Q 025131          169 KPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGV  247 (257)
Q Consensus       169 ~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~ev  247 (257)
                      ++||+|+|.|.|+|||++|++||+||+|++.|||++|+|||+++.+|++.|+++.+++++++++.+. +|+++||++.++
T Consensus        74 ~~~v~tv~~G~aaS~a~~I~~ag~~~~R~~~~ns~~miH~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~tg~~~e~  153 (183)
T d1yg6a1          74 KPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQ  153 (183)
T ss_dssp             SSCEEEEEEEEEETHHHHHHHTSCTTCEEECTTCEEEECCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred             CCCEEEEEEEEeHHHHHHHHHcCCCCceeeCCCceEEecccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999 999999999999


Q ss_pred             HHHHHhhc
Q 025131          248 VSDLKKAQ  255 (257)
Q Consensus       248 I~~l~r~~  255 (257)
                      +.++++..
T Consensus       154 i~~~~~~d  161 (183)
T d1yg6a1         154 IERDTERD  161 (183)
T ss_dssp             HHHHTSSC
T ss_pred             HHHHhccC
Confidence            99776643

>d2f6ia1 c.14.1.1 (A:177-366) Clp protease, ClpP subunit {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Clp protease, ClpP subunit
domain: Clp protease, ClpP subunit
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=2.4e-43  Score=302.51  Aligned_cols=155  Identities=30%  Similarity=0.523  Sum_probs=140.6

Q ss_pred             CCCcchHhhhccCcEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCcccHhhHHHHHHHHhccCC
Q 025131           91 QPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKP  170 (257)
Q Consensus        91 ~~~~Di~s~Ll~~RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~G~v~aGlAIyD~m~~i~~  170 (257)
                      .-+.|++++||++|||||+|+||++++++++++|++|+.++ .+||+|||||||        |+|++|++|||+|+++++
T Consensus         6 ~~~~d~~~~l~~~rii~l~g~Id~~~~~~~i~~l~~l~~~~-~~~I~l~INS~G--------G~v~~g~ai~d~i~~~~~   76 (190)
T d2f6ia1           6 DMKKDVKLFFFKKRIIYLTDEINKKTADELISQLLYLDNIN-HNDIKIYINSPG--------GSINEGLAILDIFNYIKS   76 (190)
T ss_dssp             CSSHHHHHHHHTTTEEEECSCBCHHHHHHHHHHHHHHHHHC-CSCEEEEEEECC--------BCHHHHHHHHHHHHHSSS
T ss_pred             cchhhHHHHHHcCcEEEECCeeCHHHHHHHHHHHHHHhccC-CCCeEEEEeCch--------hhhhHHHHHHHHHHhhCC
Confidence            34689999999999999999999999999999999999876 578999999999        999999999999999999


Q ss_pred             CEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcccccCHHHHHHHHHHHHHHHHHHH-HHHHhcCCCHHHHH
Q 025131          171 PIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGRIEGQATDVEIARKEMKNVKAELV-LYTEKSPEDHGVVS  249 (257)
Q Consensus       171 ~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~~~GqAsDi~i~a~el~~~k~~l~-iY~erTg~~~evI~  249 (257)
                      +|+|+|.|.|+|||++|+++|+||+|+++||+++|+|||+++.+|+++|++++++|++++++.+. +|+++||++.+.++
T Consensus        77 ~v~tv~~G~aaS~a~~i~~aG~kg~R~~~pns~imiH~~s~~~~G~~~di~~~~~~l~~~~~~~~~i~a~~tg~~~~~i~  156 (190)
T d2f6ia1          77 DIQTISFGLVASMASVILASGKKGKRKSLPNCRIMIHQPLGNAFGHPQDIEIQTKEILYLKKLLYHYLSSFTNQTVETIE  156 (190)
T ss_dssp             CEEEEEEEEECHHHHHHHHTSCTTCEEECTTCEEESSCTTCSCC--------CHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             ceEEEEeccccchhHHHHHhCCCCccccCCCcEEEEcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999 99999999999998


Q ss_pred             HHHhh
Q 025131          250 DLKKA  254 (257)
Q Consensus       250 ~l~r~  254 (257)
                      .+++.
T Consensus       157 ~~~~~  161 (190)
T d2f6ia1         157 KDSDR  161 (190)
T ss_dssp             HHHHT
T ss_pred             HhccC
Confidence            76654

>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B subunit, PccB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.88  E-value=0.011  Score=51.10  Aligned_cols=103  Identities=19%  Similarity=0.253  Sum_probs=76.3

Q ss_pred             eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHH
Q 025131          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (257)
Q Consensus       108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~As  185 (257)
                      .+|.++.+.+.....-+...+..  +-||-..+|+||..-+  -|.-|-+-.|-.+..++...+.|..|+++|.++|.|.
T Consensus        79 ~~G~~~~~~a~Kaa~fi~lc~~~--~iPli~l~DtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~i~viir~~yG~g~  156 (264)
T d1vrga2          79 LAGVLDIDSSDKAARFIRFLDAF--NIPILTFVDTPGYLPGVAQEHGGIIRHGAKLLYAYSEATVPKITVILRKAYGGAY  156 (264)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             cccchhhhhHHHHHHHHHHHHHh--CCceEEEeecccccccHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeCCcccHHh
Confidence            46889988776665544333432  4689999999995432  2334778889999999999999999999999999887


Q ss_pred             HHHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          186 LLLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       186 lIlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-+++.  .....++.|+|.+-+=.|.+.
T Consensus       157 ~am~~~~~~~d~~~awP~a~~~vm~pe~a  185 (264)
T d1vrga2         157 IAMGSKHLGADMVLAWPSAEIAVMGPEGA  185 (264)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             hhccCCccCCCeeeeccceeEEecCHHHh
Confidence            666542  235677888888877666544

>d1on3a2 c.14.1.4 (A:261-524) Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S) {Propionibacterium freudenreichii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Methylmalonyl-CoA carboxyltransferase (transcarboxylase 12S)
species: Propionibacterium freudenreichii [TaxId: 1744]

Probab=95.46  E-value=0.014  Score=50.35  Aligned_cols=104  Identities=15%  Similarity=0.163  Sum_probs=75.3

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCC--CCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKG--GEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~--~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      +++|.++.+.+..... ++.|-... .-||-..+|+||..-+  -|.-|-+-.|-.+++++...+.|..||++|.|++.|
T Consensus        78 ~~~G~~~~~~a~Kaar-fi~lc~~~-~iPlv~l~D~pGf~~G~~~E~~g~i~~ga~~~~a~a~~~vP~itvi~rkayG~g  155 (264)
T d1on3a2          78 VMSGCLDINASDKAAE-FVNFCDSF-NIPLVQLVDVPGFLPGVQQEYGGIIRHGAKMLYAYSEATVPKITVVLRKAYGGS  155 (264)
T ss_dssp             SGGGCBCHHHHHHHHH-HHHHHHHT-TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHH
T ss_pred             hcccccChHHHHHHHH-HHHHHHhc-CCceEEEeccccccccHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeccccCcc
Confidence            3477888877655444 33333222 5799999999995532  233477788999999999999999999999999988


Q ss_pred             HHHHccCC--CCCeeecCCcEEeeecCCcc
Q 025131          185 ALLLGAGA--KGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       185 slIlaaG~--kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-++++.  ..-.++.|+|.+-.=.|.+.
T Consensus       156 ~~am~g~~~~~d~~~aWP~A~~~vMg~Ega  185 (264)
T d1on3a2         156 YLAMCNRDLGADAVYAWPSAEIAVMGAEGA  185 (264)
T ss_dssp             HHTTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             ccccccccCChhheeeHHhhHhhhccHHHH
Confidence            77666532  34577888888877666544

>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, AccA
species: Escherichia coli [TaxId: 562]

Probab=95.31  E-value=0.015  Score=51.69  Aligned_cols=100  Identities=21%  Similarity=0.248  Sum_probs=74.6

Q ss_pred             CcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHHH
Q 025131          109 GMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAAL  186 (257)
Q Consensus       109 gg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~Asl  186 (257)
                      +|.++++....-.. ++.|.... .-||-.+|++||--.  .-|..|...++-...-.|-..+.|+.+|++|.++|-|++
T Consensus       129 ~G~~~p~~~rKa~r-~~~~a~~~-~~Pii~~vDtpG~~~g~~~E~~g~~~~~a~~~~~~~~~~vP~i~vv~g~g~~gga~  206 (316)
T d2f9ya1         129 FGMPAPEGYRKALR-LMQMAERF-KMPIITFIDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGAL  206 (316)
T ss_dssp             GGCCCHHHHHHHHH-HHHHHHHT-TCCEEEEEEESCSCCSHHHHHTTHHHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHH
T ss_pred             cccccHHHHHHHHH-HHHHHHHc-CcceEEEEecCcccCCcccccccHHHHHHHHHHHHHhCCCceEEEEEhhhhchhhh
Confidence            56666655333222 22333222 579999999999543  345567777777777888889999999999999999999


Q ss_pred             HHccCCCCCeeecCCcEEeeecCCcc
Q 025131          187 LLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       187 IlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .++.+  ++..|++||.+-+=.|.+.
T Consensus       207 a~~~~--d~v~m~~~a~~svispEg~  230 (316)
T d2f9ya1         207 AIGVG--DKVNMLQYSTYSVISPEGC  230 (316)
T ss_dssp             TTCCC--SEEEECTTCEEESSCHHHH
T ss_pred             hhhhh--hHHHHHhhhHHhhccchhh
Confidence            98888  4679999999998877754

>d2a7sa2 c.14.1.4 (A:278-548) Propionyl-CoA carboxylase complex B subunit, PccB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.15  E-value=0.021  Score=49.35  Aligned_cols=102  Identities=17%  Similarity=0.164  Sum_probs=74.5

Q ss_pred             EeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHH
Q 025131          107 YLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEA  184 (257)
Q Consensus       107 fLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~A  184 (257)
                      +++|.++.+.+.... +++.|-... .-||-.++|+||..-  .-|.-|-+-.|-.+..++...+.|..||++|-+++.|
T Consensus        81 ~~~G~~~~~~~~Ka~-rfi~lc~~~-~iPlv~l~dtpGf~~G~~~E~~g~~~~ga~~~~a~a~~~vP~isvi~~~~~G~~  158 (271)
T d2a7sa2          81 HFAGCLDINASEKAA-RFVRTCDCF-NIPIVMLVDVPGFLPGTDQEYNGIIRRGAKLLYAYGEATVPKITVITRKAYGGA  158 (271)
T ss_dssp             TGGGCBCHHHHHHHH-HHHHHHHHT-TCCEEEEEEECCBCCCHHHHHHCHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHH
T ss_pred             ccCCCcCHHHHHHHH-HHHHHHHHh-CCceEEeechhhhhhhccHHHhhHHHHHHHHHHHHHhCCCCeEEEEeCCccchh
Confidence            357999998887744 455444333 579999999999543  2333466888899999999999999999999999977


Q ss_pred             HHHHccC--CCCCeeecCCcEEeeecCC
Q 025131          185 ALLLGAG--AKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       185 slIlaaG--~kgkR~alPnS~iMIHqP~  210 (257)
                      ...+++.  .....++.|+|++-+=.|.
T Consensus       159 ~~am~~~~~~~d~~~AwP~A~igvMgpe  186 (271)
T d2a7sa2         159 YCVMGSKDMGCDVNLAWPTAQIAVMGAS  186 (271)
T ss_dssp             HHHTTCGGGTCSEEEECTTCEEESSCHH
T ss_pred             hhhhcccccccceEEEecceeEeecCHH
Confidence            6655542  2345678888888664443

>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Propionyl-CoA carboxylase complex B subunit, PccB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.08  E-value=0.035  Score=47.77  Aligned_cols=103  Identities=15%  Similarity=0.157  Sum_probs=75.6

Q ss_pred             eCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeehhHHH
Q 025131          108 LGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAWGEAA  185 (257)
Q Consensus       108 Lgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~AaS~As  185 (257)
                      ++|.|+.+.+.....-+..-+..  .-||-..+|+||..-  ..|.-|-+-.|-.+..++...+.|..||++|-+++.|.
T Consensus        77 ~~G~~~~~~a~Ka~~fi~lc~~~--~iPli~l~d~pGf~~G~~~E~~g~~~~ga~~~~a~a~~~vPkitvi~~~~~Gga~  154 (263)
T d1xnya2          77 FAGCLDITASEKAARFVRTCDAF--NVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAY  154 (263)
T ss_dssp             GGGCBCHHHHHHHHHHHHHHHHT--TCCEEEEEEECCBCCCHHHHHTTHHHHHHHHHHHHHHCCSCEEEEEEEEEEHHHH
T ss_pred             ecCCcchhhHHHHHHHHHHHHHh--CCceEEeecccccccchhHHHHhHHHHHHHHHHHHHccCCCeEEEEecCccccce
Confidence            56899988877665544333332  579999999999553  23445778889999999999999999999999999666


Q ss_pred             HHHccC--CCCCeeecCCcEEeeecCCcc
Q 025131          186 LLLGAG--AKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       186 lIlaaG--~kgkR~alPnS~iMIHqP~~~  212 (257)
                      ..+++.  .....++.|+|++-+=.|.+.
T Consensus       155 ~~m~~~~~~~d~~~awP~a~~gvm~pe~a  183 (263)
T d1xnya2         155 DVMGSKHLGADLNLAWPTAQIAVMGAQGA  183 (263)
T ss_dssp             HHTTCGGGTCSEEEECTTCEEESSCHHHH
T ss_pred             eccCCcccCCcEEEEcchhhhhccCHHHH
Confidence            554432  235678889998887666543

>d1dcia_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.49  E-value=0.25  Score=40.86  Aligned_cols=92  Identities=12%  Similarity=0.130  Sum_probs=65.9

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHhh--------------------------HHHHHH
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYETE--------------------------AFAIYD  163 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~a--------------------------GlAIyD  163 (257)
                      .++.++..++...|..++.++..+  -|.|.+.|... .|   +++.+                          ...+++
T Consensus        27 als~~m~~el~~~l~~~~~d~~v~--~vvltg~~~~F~aG---~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (275)
T d1dcia_          27 AMNRAFWRELVECFQKISKDSDCR--AVVVSGAGKMFTSG---IDLMDMASDILQPPGDDVARIAWYLRDLISRYQKTFT  101 (275)
T ss_dssp             CBCHHHHHHHHHHHHHHHTCTTCC--EEEEEESTTCSBCC---BCHHHHHHHHTSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEeccccccccC---ccHHHhhhcccccccccccchhhhhccchhhhHHHHH
Confidence            367888899999988887543222  34555554221 11   22221                          134778


Q ss_pred             HHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          164 VMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       164 ~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .|...+.||.+.+.|.|.+.|.-|++++  +-|++.++++|-+...
T Consensus       102 ~i~~~~kPvIaav~G~a~GgG~~lal~~--D~ria~~~a~f~~pe~  145 (275)
T d1dcia_         102 VIEKCPKPVIAAIHGGCIGGGVDLISAC--DIRYCTQDAFFQVKEV  145 (275)
T ss_dssp             HHHHSSSCEEEEECSEEETHHHHHHTTS--SEEEEETTCEEECCGG
T ss_pred             HHHhcCCCEEEEEeeEeehhhHHHHhhc--CchhhccCccccchhc
Confidence            8999999999999999999999999999  5799999999876543

>d1pixa3 c.14.1.4 (A:288-586) Glutaconyl-CoA decarboxylase A subunit {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Glutaconyl-CoA decarboxylase A subunit
species: Acidaminococcus fermentans [TaxId: 905]

Probab=92.93  E-value=0.14  Score=44.55  Aligned_cols=100  Identities=14%  Similarity=0.085  Sum_probs=70.8

Q ss_pred             cEEEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEeeeeh
Q 025131          104 RIVYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCVGNAW  181 (257)
Q Consensus       104 RIIfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~G~Aa  181 (257)
                      .....+|.|+.+.+.....-+...+..  .-||-..+|+||..-  .-|.-|-+-.|-.+..++...+.|..|+++|.++
T Consensus        91 ~~~~~~G~l~~~~a~K~~rfi~lc~~~--~iPlv~l~D~pGf~~g~~~E~~g~~r~ga~~~~a~~~~~VP~isvi~r~~~  168 (299)
T d1pixa3          91 GSVGIGGKLYRQGLVKMNEFVTLCARD--RLPIVWIQDTTGIDVGNDAEKAELLGLGQSLIYSIQTSHIPQFEITLRKGT  168 (299)
T ss_dssp             TCCEETTEECHHHHHHHHHHHHHHHHT--TCCEEEEECCCEECCSHHHHHTTHHHHHHHHHHHHHTCCCCEEEEECSEEE
T ss_pred             CCcCCCCccCHHHHHHHHHHHHHHHHc--CCeEEEEEeCCCcccchHHHhhhHHHHHHHHHHHHHhhcceeEEEEecccc
Confidence            344689999998877666544433332  468999999999432  2244577888889999999999999999999999


Q ss_pred             hHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          182 GEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       182 S~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +.|.+.+++..     ..|...+++-.|.
T Consensus       169 G~a~~am~g~~-----~~~~~~~~~awP~  192 (299)
T d1pixa3         169 AAAHYVLGGPQ-----GNDTNAFSIGTAA  192 (299)
T ss_dssp             TTHHHHTTCTT-----CTTTEEEEEECTT
T ss_pred             cccccccccCc-----cCcccceecCCCc
Confidence            98776544331     2345555555564

>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB {Pectobacterium carotovorum [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Carbapenem biosynthes protein CarB
species: Pectobacterium carotovorum [TaxId: 554]

Probab=92.68  E-value=0.19  Score=41.04  Aligned_cols=96  Identities=9%  Similarity=0.131  Sum_probs=66.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCC-CC-CCCCc-------c------cHhhHHHHHHHHhccCCCEEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGT-TK-GGEKL-------G------YETEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~-~~-~~~~~-------G------~v~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      ++.++...+...|..++.+   ++|. +.|-|.|. .. .|-.+       +      .......++..|..++.||.+.
T Consensus        24 l~~~~~~~l~~~l~~~~~d---~~i~~vVl~~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaa  100 (230)
T d2a7ka1          24 FSRTLETSVKDALARANAD---DSVRAVVVYGGAERSFSAGGDFNEVKQLSRSEDIEEWIDRVIDLYQAVLNVNKPTIAA  100 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHC---TTCCEEEEECCTTSCSBCBSCHHHHHTC-CHHHHHHHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCHHHHHHHHHHHHHHHhC---Ccccccceeccchhhhhhhcccccccccccccccccchhhhhhhhhcccchhcceeee
Confidence            6778888888888777653   3443 44445442 21 12111       0      0223456788888999999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      +-|.|.+.|.-|++++  +.|++.++++|-+-....|
T Consensus       101 v~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~~G  135 (230)
T d2a7ka1         101 VDGYAIGMGFQFALMF--DQRLMASTANFVMPELKHG  135 (230)
T ss_dssp             ECSEEETHHHHHHTTS--SEEEEETTCEEECCGGGGT
T ss_pred             cccccccccccchhcc--chhhccccchhhhcccccc
Confidence            9999999999999999  5799999999876554444

>d2f6qa1 c.14.1.3 (A:108-352) Peroxisomal 3,2-trans-enoyl-CoA isomerase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Peroxisomal 3,2-trans-enoyl-CoA isomerase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.44  E-value=0.28  Score=40.32  Aligned_cols=96  Identities=17%  Similarity=0.084  Sum_probs=68.0

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccHh----------------hHHHHHHHHhccCCCEEE
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYET----------------EAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v~----------------aGlAIyD~m~~i~~~V~T  174 (257)
                      ++.++...+...|..++.++   .+.+.+.+.|... .|--+.++.                ....++..|..++.||.+
T Consensus        27 ls~~~~~~l~~~l~~~~~d~---~v~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa  103 (245)
T d2f6qa1          27 INTEMYHEIMRALKAASKDD---SIITVLTGNGDYYSSGNDLTNFTDIPPGGVEEKAKNNAVLLREFVGCFIDFPKPLIA  103 (245)
T ss_dssp             BCHHHHHHHHHHHHHHHHSS---CSEEEEEESTTCSBCCBCC----CCCTTHHHHHHHHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             CCHHHHHHHHHHHHHHhcCC---ceEEeecCCCccccCCccchhhhcccccccccccchhhhHHHHHHhhhhhcCCceEE
Confidence            67788888888888877532   3457777766432 222111111                112466778889999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|.-++++.  +-|++.++++|.+-...-|
T Consensus       104 ~v~G~a~GgG~~la~~~--D~~ia~~~a~f~~pe~~~G  139 (245)
T d2f6qa1         104 VVNGPAVGISVTLLGLF--DAVYASDRATFHTPFSHLG  139 (245)
T ss_dssp             EECSCEETHHHHGGGGC--SEEEEETTCEEECCTGGGT
T ss_pred             EECCccccccccchhhh--hhhhhhccCeEecccccCC
Confidence            99999999999999988  5799999999987655433

>d1uiya_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Thermus thermophilus [TaxId: 274]

Probab=92.32  E-value=0.23  Score=40.47  Aligned_cols=98  Identities=11%  Similarity=0.034  Sum_probs=68.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCC---------------cccHhhHHHHHHHHhccCCCEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEK---------------LGYETEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~---------------~G~v~aGlAIyD~m~~i~~~V~T  174 (257)
                      .++.++..++...|..++.++..+  -|.|-+.|... .|-.               .........++..|..++.||.+
T Consensus        22 al~~~~~~el~~~l~~~~~d~~v~--~vvl~g~g~~f~aG~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIa   99 (253)
T d1uiya_          22 PLSPEMALSLLQALDDLEADPGVR--AVVLTGRGKAFSAGADLAFLERVTELGAEENYRHSLSLMRLFHRVYTYPKPTVA   99 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSCSBCCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEecccccccccchhHHhhhccccCcccccchhhhhhhhhhHHhcCCCCEEE
Confidence            367888888988888877543222  33444545221 1111               01122334566778899999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+.|..|++++  +-|++.++++|-++....+
T Consensus       100 av~G~a~GgG~~lal~~--D~ria~~~a~~~~~e~~~g  135 (253)
T d1uiya_         100 AVNGPAVAGGAGLALAC--DLVVMDEEARLGYTEVKIG  135 (253)
T ss_dssp             EECSCEETHHHHHHHTS--SEEEEETTCEEECCHHHHT
T ss_pred             EeCeEEehhhHHHHhhh--hhhhhhhhhHHhhhhcccc
Confidence            99999999999999999  4799999999998765544

>d1nzya_ c.14.1.3 (A:) 4-Chlorobenzoyl-CoA dehalogenase {Pseudomonas sp., strain CBS-3 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: 4-Chlorobenzoyl-CoA dehalogenase
species: Pseudomonas sp., strain CBS-3 [TaxId: 306]

Probab=91.81  E-value=0.17  Score=42.07  Aligned_cols=97  Identities=12%  Similarity=-0.017  Sum_probs=67.4

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH-----------------hhHHHHHHHHhccCCCE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE-----------------TEAFAIYDVMGYVKPPI  172 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v-----------------~aGlAIyD~m~~i~~~V  172 (257)
                      .++.++..++...|..++.++..+  -|.|.+.|... .|-.+.++                 .....+++.|..++.||
T Consensus        26 al~~~~~~el~~~l~~~~~d~~i~--~vvltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPv  103 (269)
T d1nzya_          26 ALSVKAMQEVTDALNRAEEDDSVG--AVMITGAEDAFCAGFYLREIPLDKGVAGVRDHFRIAALWWHQMIHKIIRVKRPV  103 (269)
T ss_dssp             CBCHHHHHHHHHHHHHHHHCTTCC--EEEEEESTTCSBCCBCGGGSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCSSCE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEeCCcccccchhhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHhhcchh
Confidence            367788888998888887643222  34444555322 22211111                 11235667778899999


Q ss_pred             EEEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131          173 FTLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       173 ~Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~  211 (257)
                      .+.+-|.|.+.|..|++++  +.|++.+++++.+.....
T Consensus       104 Iaav~G~a~GgG~~lal~~--D~ria~~~a~~~~~~~~~  140 (269)
T d1nzya_         104 LAAINGVAAGGGLGISLAS--DMAICADSAKFVCAWHTI  140 (269)
T ss_dssp             EEEECSEEETHHHHHHHHS--SEEEEETTCEEECCHHHH
T ss_pred             ehhhhhhcCCCceeeeecc--cHhhhhhhhhhccccccc
Confidence            9999999999999999999  579999999998865543

>d1mj3a_ c.14.1.3 (A:) Enoyl-CoA hydratase (crotonase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Enoyl-CoA hydratase (crotonase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.27  E-value=0.11  Score=42.65  Aligned_cols=94  Identities=11%  Similarity=0.072  Sum_probs=63.2

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcc----c------HhhHHHHHHHHhccCCCEEEEEeeee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLG----Y------ETEAFAIYDVMGYVKPPIFTLCVGNA  180 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G----~------v~aGlAIyD~m~~i~~~V~Tv~~G~A  180 (257)
                      ++.++..++.+.|..++.++..+  -|.|.+.|... .|-.+.    .      ......+++.|..++.||.+.+-|.|
T Consensus        31 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~kPvIaav~G~a  108 (260)
T d1mj3a_          31 LCNGLIEELNQALETFEEDPAVG--AIVLTGGEKAFAAGADIKEMQNRTFQDCYSGKFLSHWDHITRIKKPVIAAVNGYA  108 (260)
T ss_dssp             BCHHHHHHHHHHHHHHHHCTTCC--EEEEECCSSEEECCBCHHHHTTCCHHHHHHC--CCGGGGGGGCSSCEEEEECSEE
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--eEEEecccccccccchhhhhhccchhhhhHHHHHHHHHHhccCCCeEEEEEcCeE
Confidence            67788888888888777644332  23445555221 221111    0      11123345677788889999999999


Q ss_pred             hhHHHHHHccCCCCCeeecCCcEEeeecC
Q 025131          181 WGEAALLLGAGAKGNRAALPSSTIMIKQP  209 (257)
Q Consensus       181 aS~AslIlaaG~kgkR~alPnS~iMIHqP  209 (257)
                      .+.|..|++++  +-|++.++++|.+-..
T Consensus       109 ~GgG~~lal~~--D~~ia~~~a~f~~pe~  135 (260)
T d1mj3a_         109 LGGGCELAMMC--DIIYAGEKAQFGQPEI  135 (260)
T ss_dssp             ETHHHHHHHHS--SEEEEETTCEEECGGG
T ss_pred             eHHHHHHHHHC--CEEEEcCCCEEECchh
Confidence            99999999999  4799999999987433

>d1hzda_ c.14.1.3 (A:) AUH protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: AUH protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.54  Score=38.92  Aligned_cols=96  Identities=16%  Similarity=0.126  Sum_probs=67.2

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCC--CCCCC---c---------ccHhhHHHHHHHHhccCCCEEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTT--KGGEK---L---------GYETEAFAIYDVMGYVKPPIFTLC  176 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~--~~~~~---~---------G~v~aGlAIyD~m~~i~~~V~Tv~  176 (257)
                      .++.++...+...|..++.++..+  -+.|-+.|..  ..|..   +         ........++..|..++.||...+
T Consensus        29 al~~~~~~~l~~~l~~~~~d~~v~--~vVl~g~g~~~f~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kpvIaav  106 (266)
T d1hzda_          29 SLSKNLIKMLSKAVDALKSDKKVR--TIIIRSEVPGIFCAGADLKERAKMSSSEVGPFVSKIRAVINDIANLPVPTIAAI  106 (266)
T ss_dssp             CBCTTHHHHHHHHHHHHHHCSSCS--EEEEEESBTEEEECCBCHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCcc--eEEEeccccccccccccccccccccchhhhhhhhHHHHHHHHHhcCCccccccc
Confidence            367788899999888887644323  2333343311  11111   0         112344568888889999999999


Q ss_pred             eeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          177 VGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       177 ~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      -|.|.+.|.-|++++  +-|++.++++|.+..-.
T Consensus       107 ~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~  138 (266)
T d1hzda_         107 DGLALGGGLELALAC--DIRVAASSAKMGLVETK  138 (266)
T ss_dssp             SEEEETHHHHHHHHS--SEEEEETTCEEECCGGG
T ss_pred             ccccccccceecccc--ceeeecCCcEEeecccc
Confidence            999999999999999  57999999999765544

>d1sg4a1 c.14.1.3 (A:2-250) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=90.66  E-value=0.23  Score=41.08  Aligned_cols=96  Identities=10%  Similarity=0.023  Sum_probs=66.5

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-CC-CC----CC--------cccHhhHHHHHHHHhccCCCEEEEEe
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-TK-GG----EK--------LGYETEAFAIYDVMGYVKPPIFTLCV  177 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~~-~~----~~--------~G~v~aGlAIyD~m~~i~~~V~Tv~~  177 (257)
                      ++.++...+...|..++.++..+  .+.|.|.|. .. .|    +.        .+.......++..|...+.||.+.+-
T Consensus        27 l~~~~~~~l~~~l~~~~~d~~v~--~vvl~g~g~~~Fs~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kpvIa~v~  104 (249)
T d1sg4a1          27 LSLEFLTELVISLEKLENDKSFR--GVILTSDRPGVFSAGLDLTEMCGRSPAHYAGYWKAVQELWLRLYQSNLVLVSAIN  104 (249)
T ss_dssp             ECHHHHHHHHHHHHHHHHCTTCC--EEEEEESSTEESCCEECGGGGSSCCHHHHHHHHHHHHHHHHHHHTCSSEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHhCCCcc--EEEEEeccceeEecccccccccccccccccccchhhHHHHHhhhcCccccchhhc
Confidence            56778888888887776533222  344445442 11 11    11        12223334577788889999999999


Q ss_pred             eeehhHHHHHHccCCCCCeeecCCcEEeeecCCc
Q 025131          178 GNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIG  211 (257)
Q Consensus       178 G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~  211 (257)
                      |.|.+.|.-|++++  +.|++.+++++.+..|..
T Consensus       105 G~a~GgG~~lal~~--D~~ia~~~a~f~~~~pe~  136 (249)
T d1sg4a1         105 GACPAGGCLVALTC--DYRILADNPRYCIGLNET  136 (249)
T ss_dssp             EEBCHHHHHHHTTS--SEEEEECCTTCCBSCCGG
T ss_pred             cccccccccccccc--ccceeecccccccccccc
Confidence            99999999999999  579999999998877753

>d1wz8a1 c.14.1.3 (A:2-264) Probable enoyl-CoA hydratase TTHA0218 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Probable enoyl-CoA hydratase TTHA0218
species: Thermus thermophilus [TaxId: 274]

Probab=89.10  E-value=1.2  Score=36.75  Aligned_cols=96  Identities=11%  Similarity=0.001  Sum_probs=65.9

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCc--------------ccHhhHHHHHHHHhccCCCEEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKL--------------GYETEAFAIYDVMGYVKPPIFTL  175 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~--------------G~v~aGlAIyD~m~~i~~~V~Tv  175 (257)
                      .++.++..++...|..++.++..+  -|.|.+.|... .|-.+              ........++..|..++.||.+.
T Consensus        32 al~~~m~~el~~~~~~~~~d~~vr--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIa~  109 (263)
T d1wz8a1          32 AMPPALHRGLARVWRDLEAVEGVR--AVLLRGEGGVFSAGGSFGLIEEMRASHEALLRVFWEARDLVLGPLNFPRPVVAA  109 (263)
T ss_dssp             CBCHHHHHHHHHHHHHHTTCTTCS--EEEEEEGGGCCBCCBCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSSCEEEE
T ss_pred             CCCHHHHHHHHHHHHHHhhCCCCe--EEEEecccccccccchhhhhhhhcccccccccchhhhhHHHHHhhhhhcceeee
Confidence            456778888888887776543333  33344545222 22111              11223345677788889999999


Q ss_pred             EeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          176 CVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       176 ~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +-|.|.+.|..|++++  +-|++.++++|.+....
T Consensus       110 v~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~  142 (263)
T d1wz8a1         110 VEKVAVGAGLALALAA--DIAVVGKGTRLLDGHLR  142 (263)
T ss_dssp             ECSEEETHHHHHHHHS--SEEEEETTCEEECCHHH
T ss_pred             cccccccccccccccc--ccccccccccccccccc
Confidence            9999999999999998  57999999999775543

>d1wdka4 c.14.1.3 (A:1-310) Fatty oxidation complex alpha subunit, N-terminal domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Fatty oxidation complex alpha subunit, N-terminal domain
species: Pseudomonas fragi [TaxId: 296]

Probab=88.80  E-value=0.85  Score=38.82  Aligned_cols=98  Identities=15%  Similarity=0.035  Sum_probs=67.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH---------------hhHHHHHHHHhccCCCEEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE---------------TEAFAIYDVMGYVKPPIFT  174 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v---------------~aGlAIyD~m~~i~~~V~T  174 (257)
                      .++.++...+...|..++.++..+  -|.|.+.|... .|-.+...               .....++..|+.++.||.+
T Consensus        31 al~~~~~~el~~al~~~~~d~~v~--~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~kPvIa  108 (310)
T d1wdka4          31 KFNRLTLNELRQAVDAIKADASVK--GVIVSSGKDVFIVGADITEFVENFKLPDAELIAGNLEANKIFSDFEDLNVPTVA  108 (310)
T ss_dssp             BCCHHHHHHHHHHHHHHHHCTTCC--EEEEEESSSSSBBCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTCSSCEEE
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCce--EEEEECCCCCccchhhhhhhhhcccccchhhhhhhhHHHHHHHHhhcCCcccee
Confidence            367788888888888887543222  23444545221 12111111               1233577889999999999


Q ss_pred             EEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCCcc
Q 025131          175 LCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       175 v~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~~~  212 (257)
                      .+-|.|.+-|.-|++++  +.|++.++++|-+....-|
T Consensus       109 av~G~a~GgG~elal~c--D~ria~~~a~f~~pe~~~G  144 (310)
T d1wdka4         109 AINGIALGGGLEMCLAA--DFRVMADSAKIGLPEVKLG  144 (310)
T ss_dssp             EECSCEETHHHHHHHTS--SEEEEETTCEEECGGGGGT
T ss_pred             eccccccccccccchhh--hhhhccccceecccccccC
Confidence            99999999999999999  5799999999877654433

>d2fw2a1 c.14.1.3 (A:3-260) Chromodomain protein CDY2A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Chromodomain protein CDY2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.63  Score=38.37  Aligned_cols=95  Identities=16%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC-CCCCcccH----------------hhHHHHHHHHhccCCCEE
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK-GGEKLGYE----------------TEAFAIYDVMGYVKPPIF  173 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~-~~~~~G~v----------------~aGlAIyD~m~~i~~~V~  173 (257)
                      .++.++..++...|..++.+ +.+  -|.|.+.|... .|-.++..                .....++..|...+.||.
T Consensus        26 als~~~~~el~~al~~~~~d-~~~--~vvl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~kP~I  102 (258)
T d2fw2a1          26 ALNTEVIKEMVNALNSAAAD-DSK--LVLFSAAGSVFCCGLDFGYFVRHLRNDRNTASLEMVDTIKNFVNTFIQFKKPIV  102 (258)
T ss_dssp             CBCHHHHHHHHHHHHHHHHS-SCS--EEEEEECSSCSBCCBCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCEE
T ss_pred             CCCHHHHHHHHHHHHHHHcC-CCE--EEEEecCccccccccccchhhhcccccccchhhHHHHHHHHHHHhhhccceeee
Confidence            35678888888888777653 333  35566666332 22221211                112345667888999999


Q ss_pred             EEEeeeehhHHHHHHccCCCCCeeecCCcEEeeecCC
Q 025131          174 TLCVGNAWGEAALLLGAGAKGNRAALPSSTIMIKQPI  210 (257)
Q Consensus       174 Tv~~G~AaS~AslIlaaG~kgkR~alPnS~iMIHqP~  210 (257)
                      +.+-|.|.+.|..|++++  +-|++.++++|-+....
T Consensus       103 aav~G~a~GgG~~lal~~--D~~ia~~~a~f~~pe~~  137 (258)
T d2fw2a1         103 VSVNGPAIGLGASILPLC--DLVWANEKAWFQTPYTT  137 (258)
T ss_dssp             EEECSCEETHHHHTGGGS--SEEEEETTCEEECCHHH
T ss_pred             eecccccccccccccccc--cccceecccceeecccc
Confidence            999999999999999999  57999999998765443

>d1ef8a_ c.14.1.3 (A:) Methylmalonyl CoA decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Methylmalonyl CoA decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=88.24  E-value=0.79  Score=37.72  Aligned_cols=92  Identities=18%  Similarity=0.284  Sum_probs=63.4

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCC-C--CCC---C-------CcccHhhHHHHHHHHhccCCCEEEEEee
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGT-T--KGG---E-------KLGYETEAFAIYDVMGYVKPPIFTLCVG  178 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~-~--~~~---~-------~~G~v~aGlAIyD~m~~i~~~V~Tv~~G  178 (257)
                      ++.++...+...|..++. | +-..-|..-+.|+ .  .++   +       ..........+++.|..++.||.+.+-|
T Consensus        28 l~~~~~~~l~~al~~~~~-~-~~~~vVl~g~~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~~kPvIAav~G  105 (261)
T d1ef8a_          28 LSKVFIDDLMQALSDLNR-P-EIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISMVEG  105 (261)
T ss_dssp             CCHHHHHHHHHHHHHTCS-T-TCCEEEEECCTTCSEEECCSCSTTC-----CTTCTTSHHHHHHHHHHHCSSCEEEEECS
T ss_pred             CCHHHHHHHHHHHHHHhC-C-CCEEEEEeccccchhhcccccccccccCCccccccccchhhhHHHHHhCchhhhhcccc
Confidence            677888888888877652 2 2222233333331 1  111   1       1122334568999999999999999999


Q ss_pred             eehhHHHHHHccCCCCCeeecCCcEEeee
Q 025131          179 NAWGEAALLLGAGAKGNRAALPSSTIMIK  207 (257)
Q Consensus       179 ~AaS~AslIlaaG~kgkR~alPnS~iMIH  207 (257)
                      .|.+.|..|++++  +-|++.++++|-+-
T Consensus       106 ~a~GgG~~lal~c--D~ria~~~a~~~~p  132 (261)
T d1ef8a_         106 SVWGGAFEMIMSS--DLIIAASTSTFSMT  132 (261)
T ss_dssp             EEETHHHHHHHHS--SEEEEETTCEEECC
T ss_pred             cccchhhhhhhhh--hhhhhhHhHHHhhh
Confidence            9999999999999  57999999988653

>d1pjha_ c.14.1.3 (A:) Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Dienoyl-CoA isomerase (delta3-delta2-enoyl-CoA isomerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.37  E-value=0.95  Score=37.17  Aligned_cols=91  Identities=12%  Similarity=0.093  Sum_probs=61.0

Q ss_pred             ccChhHHHHHHHHHHhchhcCCCCceE-EEEcCCCCCC-CCCCcc-----------------------cHhhHHHHHHHH
Q 025131          111 SFVPSVTELILAEFLYLQYEDVEKPIY-LYINSTGTTK-GGEKLG-----------------------YETEAFAIYDVM  165 (257)
Q Consensus       111 ~I~~~~a~~iiaqLl~L~~~d~~k~I~-LyINSpG~~~-~~~~~G-----------------------~v~aGlAIyD~m  165 (257)
                      .++.+....+...|..++.+   ++|. +.|-+.|... .|--+.                       .+.....+++.|
T Consensus        28 a~~~~~~~el~~al~~~~~d---~~v~~vVl~g~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  104 (266)
T d1pjha_          28 ALEGEDYIYLGELLELADRN---RDVYFTIIQSSGRFFSSGADFKGIAKAQGDDTNKYPSETSKWVSNFVARNVYVTDAF  104 (266)
T ss_dssp             CBCHHHHHHHHHHHHHHHHC---TTCCEEEEECBTTBSBCCBCHHHHHC-------CCSSHHHHHHHHTHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhC---CCceEEEEeccccccccchhHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            35777888888888877753   3343 3344444111 111000                       122334577889


Q ss_pred             hccCCCEEEEEeeeehhHHHHHHccCCCCCeeecC-CcEEee
Q 025131          166 GYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALP-SSTIMI  206 (257)
Q Consensus       166 ~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alP-nS~iMI  206 (257)
                      ..++.||...+-|.|.+.|..|++++  +-|++.+ ++.|.+
T Consensus       105 ~~~~kP~IAav~G~a~GgG~~lal~~--D~~ia~~~~~~~~~  144 (266)
T d1pjha_         105 IKHSKVLICCLNGPAIGLSAALVALC--DIVYSINDKVYLLY  144 (266)
T ss_dssp             HHCCSEEEEEECSCEEHHHHHHHHHS--SEEEESSTTCEEEC
T ss_pred             Hhcchhhhhhhhcccccccccchhcc--chhhhhhccccccc
Confidence            99999999999999999999999999  4799875 467665

>d1q52a_ c.14.1.3 (A:) Naphthoate synthase MenB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Crotonase-like
domain: Naphthoate synthase MenB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.28  E-value=2.1  Score=35.60  Aligned_cols=99  Identities=13%  Similarity=0.092  Sum_probs=62.9

Q ss_pred             cChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCCCCCCc---ccHh--------------------------hHHHHH
Q 025131          112 FVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTKGGEKL---GYET--------------------------EAFAIY  162 (257)
Q Consensus       112 I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~~~~~~---G~v~--------------------------aGlAIy  162 (257)
                      ++.++...+...|..++.++..+-|-|.=+.++....|..+   +++.                          ....++
T Consensus        44 l~~~m~~eL~~~l~~~~~d~~vr~vVltg~~~~f~~gG~~f~ag~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (297)
T d1q52a_          44 FRPHTVDELYRVLDHARMSPDVGVVLLTGNGPSPKDGGWAFCSGGDQRIRGRSGYQYASGDTADTVDVARAGRLHILEVQ  123 (297)
T ss_dssp             CCHHHHHHHHHHHHHHHHCTTCCEEEEEECCCCTTTCCCEEECCC-----------------------------CHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhCCCccEEEEecCCCcccchhhhhhhcchhhhhcccccccccccccchhhhHHHHHHHHHHHH
Confidence            67888888888888777644334333332222111111111   1110                          123567


Q ss_pred             HHHhccCCCEEEEEeeeehhHHHHHHccCCCCCeeecCC-cEEeeecCCcc
Q 025131          163 DVMGYVKPPIFTLCVGNAWGEAALLLGAGAKGNRAALPS-STIMIKQPIGR  212 (257)
Q Consensus       163 D~m~~i~~~V~Tv~~G~AaS~AslIlaaG~kgkR~alPn-S~iMIHqP~~~  212 (257)
                      ..|..++.||.+.+-|.|.+.|+.|++++  +.|++.+. ++|-+.....|
T Consensus       124 ~~i~~~~kPvIaav~G~a~GGG~~lal~~--D~~ia~~~~~~f~~pe~~~G  172 (297)
T d1q52a_         124 RLIRFMPKVVICLVNGWAAGGGHSLHVVC--DLTLASREYARFKQTDADVG  172 (297)
T ss_dssp             HHHHHSSSEEEEEECSEEETHHHHHHHHS--SEEEEETTTCEEECCGGGGT
T ss_pred             HHHHhcCCeEEEEEcceeeeccchhhhhh--hccccccccccceeeeeccc
Confidence            77888999999999999999999999999  57998775 46766554444

>d1uyra2 c.14.1.4 (A:1815-2218) Acetyl-coenzyme A carboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: ClpP/crotonase
superfamily: ClpP/crotonase
family: Biotin dependent carboxylase carboxyltransferase domain
domain: Acetyl-coenzyme A carboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.35  E-value=0.9  Score=41.15  Aligned_cols=105  Identities=14%  Similarity=0.061  Sum_probs=71.4

Q ss_pred             EEeCcccChhHHHHHHHHHHhchhcCCCCceEEEEcCCCCCC--CCCCcccHhhHHHHHHHHhccCCCEEEEEe--eeeh
Q 025131          106 VYLGMSFVPSVTELILAEFLYLQYEDVEKPIYLYINSTGTTK--GGEKLGYETEAFAIYDVMGYVKPPIFTLCV--GNAW  181 (257)
Q Consensus       106 IfLgg~I~~~~a~~iiaqLl~L~~~d~~k~I~LyINSpG~~~--~~~~~G~v~aGlAIyD~m~~i~~~V~Tv~~--G~Aa  181 (257)
                      --.||.+.++.+......+..+... -.-||-++.|.||...  .-|.-|-+-.|-.|.+++...+.|+.+|+.  |-+.
T Consensus       104 ~~~Ggv~~p~sA~K~A~~i~d~cd~-~~lPLi~l~D~pGF~~G~~~E~~gilr~GA~iv~A~~~~~vP~i~vI~~~g~~~  182 (404)
T d1uyra2         104 QEPGQVWHPNSAFKTAQAINDFNNG-EQLPMMILANWRGFSGGQRDMFNEVLKYGSFIVDALVDYKQPIIIYIPPTGELR  182 (404)
T ss_dssp             EECTTCBCHHHHHHHHHHHHHHHTT-SCCCEEECCCCCCBCC------CTHHHHHHHHHHHHHTCCSCEEEEECTTCEEE
T ss_pred             hccCCccCchHHHHHHHHHHHhhhc-cccceEEeecCCcccCcHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCCcccc
Confidence            4458888888877766665444321 2479999999999653  334447788999999999999999999995  6666


Q ss_pred             hHHHHHHccCCCC----CeeecCCcEEeeecCCcc
Q 025131          182 GEAALLLGAGAKG----NRAALPSSTIMIKQPIGR  212 (257)
Q Consensus       182 S~AslIlaaG~kg----kR~alPnS~iMIHqP~~~  212 (257)
                      + |+.+++++...    ..|+-|+|++-+=.|.+.
T Consensus       183 G-Ga~vv~~~~~~~~~~~~yAwP~a~~gVm~pEGa  216 (404)
T d1uyra2         183 G-GSWVVVDPTINADQMEMYADVNARAGVLEPQGM  216 (404)
T ss_dssp             H-HHHHTTCGGGGTTTEEEEEETTCEEESSCHHHH
T ss_pred             h-hhhhcccCccCCccceEEECCccccccCChhhh
Confidence            6 45555543211    135667777777666654