Citrus Sinensis ID: 025146

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGNRIPLNRMM
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccEEEEEEccccEEEEEEEccccccccccccccEEEEEEccccccccEEEEEEcccEEcccccHHHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEcccccccccccccEEEEEEccccccccEEEEEcHHHEEEccccHHHHHHHHHHccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
maeekestssslsqgltphdpedvpkspphspnsstrKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISaaispdqntsafkevaiirhprlgeyafGFITSSVVLqrdhgdeelcsvyvptnhlyigdiflvnseeiirpnlsvrEGIEIIVSVGmtmpqvispiervpahpgnriplnrmm
Flexible Loop (DISEMBL)
maeekestssslsqgltphdpedvpkspphspnsstRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMpqvispiervpahpgnriplnrmm
Low Complexity Region (SEG)
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGNRIPLNRMM
Disordered region (IsUnstruct)
**************************************ACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISP*QNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPI*****************
Disordered Region (DISOPRED)
*********************************************SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISA*********AFKEVAIIRHPRLGEYAFGFITSSVV****HGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGM**************************
Disordered Region (DISEMBL)
**************************************ACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGNRIPLNRMM
Disordered Region (DISPRO)
************************************RKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQ**********************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEEKESTSSSLSQGLTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGNRIPLNRMM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
297852120	261	hypothetical protein ARALYDRAFT_473756 [	0.996	0.980	0.819	1e-122
21592424	261	unknown [Arabidopsis thaliana]	0.996	0.980	0.819	1e-122
18400825	261	like COV 2 protein [Arabidopsis thaliana	0.996	0.980	0.816	1e-121
224062868	257	predicted protein [Populus trichocarpa]	0.992	0.992	0.837	1e-119
356516319	258	PREDICTED: uncharacterized protein LOC10	0.992	0.988	0.775	1e-114
212722772	258	COV1-like protein isoform 1 [Zea mays] g	0.992	0.988	0.775	1e-114
115441275	259	Os01g0867900 [Oryza sativa Japonica Grou	0.996	0.988	0.768	1e-113
357464469	258	hypothetical protein MTR_3g095210 [Medic	0.992	0.988	0.763	1e-113
217072534	258	unknown [Medicago truncatula]	0.992	0.988	0.763	1e-113
242059357	258	hypothetical protein SORBIDRAFT_03g04101	0.992	0.988	0.771	1e-113

>gi|297852120|ref|XP_002893941.1| hypothetical protein ARALYDRAFT_473756 [Arabidopsis lyrata subsp. lyrata] gi|297339783|gb|EFH70200.1| hypothetical protein ARALYDRAFT_473756 [Arabidopsis lyrata subsp. lyrata]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/261 (81%), Positives = 237/261 (90%), Gaps = 5/261 (1%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE+KE+T+SSLSQGLTPH DPED PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEDKEATTSSLSQGLTPHQDPEDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISP 239
           LQ DHG+EELCSVYVPTNHLYIGD+FLV+SEEIIRPNLS+REGIEIIVSVGMTMPQVIS 
Sbjct: 181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query: 240 IE----RVPAHPGNRIPLNRM 256
            +    R P     R+PLNR+
Sbjct: 241 ADRTTNRTPHQHSLRVPLNRL 261

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21592424|gb|AAM64375.1| unknown [Arabidopsis thaliana]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/261 (81%), Positives = 237/261 (90%), Gaps = 5/261 (1%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE KE+T+SSLSQGLTPH DPED PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEGKEATTSSLSQGLTPHQDPEDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISP 239
           LQ DHG+EELCSVYVPTNHLYIGD+FLV+SEEIIRPNLS+REGIEIIVSVGMTMPQVIS 
Sbjct: 181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query: 240 IE----RVPAHPGNRIPLNRM 256
           ++    R P     R+PLNR+
Sbjct: 241 VDRTANRTPHQHSLRVPLNRL 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400825|ref|NP_564483.1| like COV 2 protein [Arabidopsis thaliana] gi|12321538|gb|AAG50825.1|AC026757_6 unknown protein [Arabidopsis thaliana] gi|51971581|dbj|BAD44455.1| unknown protein [Arabidopsis thaliana] gi|51971717|dbj|BAD44523.1| unknown protein [Arabidopsis thaliana] gi|194579027|gb|ACF75547.1| At1g43130 [Arabidopsis thaliana] gi|332193826|gb|AEE31947.1| like COV 2 protein [Arabidopsis thaliana]

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/261 (81%), Positives = 237/261 (90%), Gaps = 5/261 (1%)

Query: 1   MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
           MAE KE+T+SSLSQGLTPH DP+D PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct: 1   MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query: 60  FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
           FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct: 61  FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query: 120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
           WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct: 121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query: 180 LQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISP 239
           LQ DHG+EELCSVYVPTNHLYIGD+FLV+SEEIIRPNLS+REGIEIIVSVGMTMPQVIS 
Sbjct: 181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query: 240 IE----RVPAHPGNRIPLNRM 256
           ++    R P     R+PLNR+
Sbjct: 241 VDRTTNRTPHQHSLRVPLNRL 261

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062868|ref|XP_002300910.1| predicted protein [Populus trichocarpa] gi|222842636|gb|EEE80183.1| predicted protein [Populus trichocarpa]

 Score =  433 bits (1113), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/258 (83%), Positives = 241/258 (93%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQGLTPH--DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           M E KE  SSSLSQGL  H  DP+D+PKSPP SPNSSTRKACYAVLQSW SKKFMTGCVV
Sbjct: 1   MEEAKELASSSLSQGLNHHGSDPDDIPKSPPGSPNSSTRKACYAVLQSWASKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTFLVTWWFI+FVD FFSPIYA LG++IFGLGF+TSI+FI F+G+FASSWLGATV
Sbjct: 61  LFPVAVTFLVTWWFIQFVDGFFSPIYAHLGIDIFGLGFVTSIIFILFIGIFASSWLGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           F +GEWFIKR+PF+KH+YSASKQIS+AISPDQNT+AFKEVAIIRHPR GEYAFGFITSS+
Sbjct: 121 FLVGEWFIKRMPFVKHLYSASKQISSAISPDQNTTAFKEVAIIRHPRHGEYAFGFITSSL 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
           VLQR++GDEELCSVYVPTNHLYIGD+FLVNSEEIIRPNLS+REGIEIIVS+GMTMPQV+S
Sbjct: 181 VLQRENGDEELCSVYVPTNHLYIGDVFLVNSEEIIRPNLSIREGIEIIVSIGMTMPQVLS 240

Query: 239 PIERVPAHPGNRIPLNRM 256
           PIER+P HP NR+PLNR+
Sbjct: 241 PIERIP-HPSNRLPLNRV 257

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516319|ref|XP_003526843.1| PREDICTED: uncharacterized protein LOC100801920 [Glycine max]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/258 (77%), Positives = 229/258 (88%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQG--LTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQG   +  DPED  KSP  SPNSSTR+AC  VLQSWVSKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQGDNASRDDPEDPAKSPLSSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSPIY+RLG+++FGLGF+TS+ F+F +GVF SSW+GATV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPIYSRLGIDVFGLGFVTSLAFVFLIGVFVSSWMGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIKR+P ++HIYSASKQISAAISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWIGEWFIKRMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
            LQ+D+ DEELCSV+VPTNHLYIGDIFLVNS++IIRPNLS+REGIEIIVS GMTMPQ+IS
Sbjct: 181 TLQKDNEDEELCSVFVPTNHLYIGDIFLVNSKDIIRPNLSIREGIEIIVSGGMTMPQLIS 240

Query: 239 PIERVPAHPGNRIPLNRM 256
           P+ER    P  RI LNR+
Sbjct: 241 PVERA-TRPNERISLNRI 257

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212722772|ref|NP_001131970.1| COV1-like protein isoform 1 [Zea mays] gi|194693066|gb|ACF80617.1| unknown [Zea mays] gi|194693894|gb|ACF81031.1| unknown [Zea mays] gi|195647116|gb|ACG43026.1| COV1-like protein [Zea mays] gi|414879522|tpg|DAA56653.1| TPA: COV1-like protein isoform 1 [Zea mays] gi|414879523|tpg|DAA56654.1| TPA: COV1-like protein isoform 2 [Zea mays] gi|414879524|tpg|DAA56655.1| TPA: COV1-like protein isoform 3 [Zea mays]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/258 (77%), Positives = 228/258 (88%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA++G++IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKIGIDIFGLGFLTSMVFIFLVGIFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++HIYSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
           VLQ D GDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLS+REGIEIIVS GMTMPQVI+
Sbjct: 181 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVIA 240

Query: 239 PIERVPAHPGNRIPLNRM 256
            +E +P    N I LNRM
Sbjct: 241 SLEPMPRKSQN-IRLNRM 257

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115441275|ref|NP_001044917.1| Os01g0867900 [Oryza sativa Japonica Group] gi|20160853|dbj|BAB89792.1| membrane protein COV-like [Oryza sativa Japonica Group] gi|113534448|dbj|BAF06831.1| Os01g0867900 [Oryza sativa Japonica Group] gi|125528506|gb|EAY76620.1| hypothetical protein OsI_04571 [Oryza sativa Indica Group] gi|125572770|gb|EAZ14285.1| hypothetical protein OsJ_04209 [Oryza sativa Japonica Group] gi|215692460|dbj|BAG87880.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/259 (76%), Positives = 228/259 (88%), Gaps = 3/259 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAE++ESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEKEESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA+LG++IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKLGIDIFGLGFLTSLVFIFLVGIFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++HIYSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHIYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
           VLQ D GDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLS+REGIEIIVS GMTMPQVI+
Sbjct: 181 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVIA 240

Query: 239 PIERVPAHPGNRIPLNRMM 257
            +E  P    N I LNR+M
Sbjct: 241 SLEPTPRKSQN-IRLNRIM 258

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464469|ref|XP_003602516.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|355491564|gb|AES72767.1| hypothetical protein MTR_3g095210 [Medicago truncatula] gi|388521451|gb|AFK48787.1| unknown [Medicago truncatula]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/258 (76%), Positives = 229/258 (88%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQG--LTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ   ++  DPED  K+PP SPNSSTR+AC  VLQSWVSKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACCFVLQSWVSKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+Y+  GVEIFGLGF+TS+ F+F +GVF SSW+GATV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEW IK++P ++HIYSASKQISAAISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
            LQ+++ DEELCSV++PTNHLYIGDI L+NS+++IRPNLS+REGIEIIVS GMTMPQVIS
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYIGDIILINSKDVIRPNLSIREGIEIIVSGGMTMPQVIS 240

Query: 239 PIERVPAHPGNRIPLNRM 256
           PIERV AHP  RI LNR+
Sbjct: 241 PIERV-AHPNERISLNRI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072534|gb|ACJ84627.1| unknown [Medicago truncatula]

 Score =  413 bits (1062), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/258 (76%), Positives = 229/258 (88%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQG--LTPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ   ++  DPED  K+PP SPNSSTR+AC  VLQSWVSKKFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQADNVSCEDPEDPAKTPPTSPNSSTRRACRFVLQSWVSKKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+Y+  GVEIFGLGF+TS+ F+F +GVF SSW+GATV
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYSSFGVEIFGLGFITSLAFVFVIGVFVSSWMGATV 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEW IK++P ++HIYSASKQISAAISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWIGEWLIKQMPLVRHIYSASKQISAAISPDQNTTAFKEVAIIRHPRVGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
            LQ+++ DEELCSV++PTNHLYIGDI L+NS+++IRPNLS+REGIEIIVS GMTMPQVIS
Sbjct: 181 TLQKENEDEELCSVFIPTNHLYIGDIILINSKDVIRPNLSIREGIEIIVSGGMTMPQVIS 240

Query: 239 PIERVPAHPGNRIPLNRM 256
           PIERV AHP  RI LNR+
Sbjct: 241 PIERV-AHPNERISLNRI 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242059357|ref|XP_002458824.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor] gi|241930799|gb|EES03944.1| hypothetical protein SORBIDRAFT_03g041010 [Sorghum bicolor]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 199/258 (77%), Positives = 226/258 (87%), Gaps = 3/258 (1%)

Query: 1   MAEEKESTSSSLSQGLTPHDPEDVPKSPPH--SPNSSTRKACYAVLQSWVSKKFMTGCVV 58
           MAEEKESTS  LSQ     DPED  KSPP   SP +STRKAC AVLQSWVS+KFMTGCVV
Sbjct: 1   MAEEKESTSIPLSQAAEAVDPEDPAKSPPRPSSPTTSTRKACCAVLQSWVSRKFMTGCVV 60

Query: 59  LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV 118
           LFPVAVTF +TWWFI+FVD FFSP+YA+ GV+IFGLGFLTS++FIF VG+F SSW+G+T+
Sbjct: 61  LFPVAVTFFITWWFIQFVDGFFSPLYAKFGVDIFGLGFLTSLVFIFLVGLFVSSWVGSTI 120

Query: 119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV 178
           FW+GEWFIK++PF++H+YSASKQ+S AISPDQNT+AFKEVAIIRHPR+GEYAFGFITS+V
Sbjct: 121 FWVGEWFIKKMPFVRHLYSASKQVSTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSTV 180

Query: 179 VLQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVIS 238
           VLQ D GDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLS+REGIEIIVS GMTMPQVI+
Sbjct: 181 VLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVSGGMTMPQVIA 240

Query: 239 PIERVPAHPGNRIPLNRM 256
            +E +P      I LNRM
Sbjct: 241 SLEPMP-RKSQSIRLNRM 257

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2018640	261	LCV2 "AT1G43130" [Arabidopsis	0.996	0.980	0.816	1.7e-114
TAIR|locus:2061654	256	LCV1 "AT2G20130" [Arabidopsis	0.894	0.898	0.686	1.5e-83
TAIR|locus:2061668	268	COV1 "AT2G20120" [Arabidopsis	0.867	0.832	0.678	3.9e-83
UNIPROTKB|Q3AEZ4	211	CHY_0429 "Putative uncharacter	0.708	0.862	0.329	9e-22
TIGR_CMR|CHY_0429	211	CHY_0429 "conserved hypothetic	0.708	0.862	0.329	9e-22
UNIPROTKB|Q0C0Q5	237	HNE_1988 "Putative uncharacter	0.785	0.852	0.291	1e-20
UNIPROTKB|Q5LRR3	224	SPO2062 "Uncharacterized prote	0.789	0.906	0.279	5.7e-20
TIGR_CMR|SPO_2062	224	SPO_2062 "conserved hypothetic	0.789	0.906	0.279	5.7e-20
UNIPROTKB|Q3Z7T7	214	DET0989 "Putative uncharacteri	0.758	0.911	0.257	8.3e-19
TIGR_CMR|DET_0989	214	DET_0989 "conserved hypothetic	0.758	0.911	0.257	8.3e-19

TAIR|locus:2018640 LCV2 "AT1G43130" [Arabidopsis thaliana (taxid:3702)]

 Score = 1129 (402.5 bits), Expect = 1.7e-114, P = 1.7e-114
 Identities = 213/261 (81%), Positives = 237/261 (90%)

Query:     1 MAEEKESTSSSLSQGLTPH-DPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVL 59
             MAE KE+T+SSLSQGLTPH DP+D PKSPP+SPNSSTRKACY VLQSWVSKKFMTG VVL
Sbjct:     1 MAEGKEATTSSLSQGLTPHQDPDDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVVL 60

Query:    60 FPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVF 119
             FPVAVTFL+TWWFI+FVD FFSPIY  LGV+IFGLGF+TS+LF FFVG+FASSWLG+TVF
Sbjct:    61 FPVAVTFLITWWFIQFVDGFFSPIYENLGVDIFGLGFITSVLFTFFVGIFASSWLGSTVF 120

Query:   120 WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVV 179
             WLGE FI+R+PF+KHIYSASKQIS AISPDQNT+AFKEVAIIRHPR+GEYAFGFITSSV 
Sbjct:   121 WLGEQFIRRMPFVKHIYSASKQISTAISPDQNTTAFKEVAIIRHPRIGEYAFGFITSSVT 180

Query:   180 LQRDHGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISP 239
             LQ DHG+EELCSVYVPTNHLYIGD+FLV+SEEIIRPNLS+REGIEIIVSVGMTMPQVIS 
Sbjct:   181 LQTDHGEEELCSVYVPTNHLYIGDVFLVSSEEIIRPNLSIREGIEIIVSVGMTMPQVISH 240

Query:   240 IERV----PAHPGNRIPLNRM 256
             ++R     P     R+PLNR+
Sbjct:   241 VDRTTNRTPHQHSLRVPLNRL 261

GO:0003674 "molecular_function" evidence=ND

GO:0010222 "stem vascular tissue pattern formation" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2061654 LCV1 "AT2G20130" [Arabidopsis thaliana (taxid:3702)]

 Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
 Identities = 162/236 (68%), Positives = 189/236 (80%)

Query:    20 DPEDVPKSPPHSPNS--STRKACYAVL----QSWVSKKFMTGCVVLFPVAVTFLVTWWFI 73
             D +D   S P S +S  S+ ++ +  L    + W SKKFMTGCV+L P+AVTF  TWWFI
Sbjct:    19 DKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTGCVILLPIAVTFYTTWWFI 78

Query:    74 EFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMK 133
              FVD FFSPIYA LG+ IFG GFLTSI FIF VGVF SSWLGA+V  LGEWFIKR+PF++
Sbjct:    79 HFVDGFFSPIYALLGINIFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFVR 138

Query:   134 HIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSVY 193
             HIY+ASKQIS AISPDQNT AFKEVAIIRHPR+GEYAFGFITS+VVLQ    +EELC VY
Sbjct:   139 HIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCVY 198

Query:   194 VPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGN 249
             VPTNHLYIGDI LVNS ++IRPNLSVREGIEI+VS GM+MPQ++S +++  A  GN
Sbjct:   199 VPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILSTLDKPLASIGN 254

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2061668 COV1 "AT2G20120" [Arabidopsis thaliana (taxid:3702)]

 Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
 Identities = 156/230 (67%), Positives = 188/230 (81%)

Query:    20 DPEDVPKSPPHSPNS---STRKACYAVL----QSWVSKKFMTGCVVLFPVAVTFLVTWWF 72
             D +D   S P S +S   S+ ++ +  L    + W SKKFMTGCV+L P+A+TF +TWWF
Sbjct:    28 DKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMTGCVILLPIAITFYITWWF 87

Query:    73 IEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFM 132
             I FVD FFSPIYA+LG+ +FG GFLTSI FIF VGVF SSWLGA+V  LGEWFIKR+PF+
Sbjct:    88 IHFVDGFFSPIYAQLGINVFGFGFLTSIAFIFLVGVFMSSWLGASVLNLGEWFIKRMPFV 147

Query:   133 KHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQRDHGDEELCSV 192
             +HIY+ASKQIS AISPDQNT AFKEVAIIRHPR+GEYAFGFITS+VVLQ    +EELC V
Sbjct:   148 RHIYNASKQISTAISPDQNTQAFKEVAIIRHPRVGEYAFGFITSTVVLQNYPTEEELCCV 207

Query:   193 YVPTNHLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPIER 242
             YVPTNHLYIGD+ LVNS ++IRPNLSVREGIEI+VS GM+MPQ++S +++
Sbjct:   208 YVPTNHLYIGDLLLVNSNDVIRPNLSVREGIEIVVSGGMSMPQILSTVDK 257

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009734 "auxin mediated signaling pathway" evidence=IGI

GO:0010222 "stem vascular tissue pattern formation" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IDA

UNIPROTKB|Q3AEZ4 CHY_0429 "Putative uncharacterized protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 62/188 (32%), Positives = 105/188 (55%)

Query:    52 FMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARL-GVEIFGLGFLTSILFIFFVGVFA 110
             F+TG  V+ P A+T  + +    F D      +A++ G++I GLG LT  L +  VG+ A
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIFGIDIPGLGVLTVALLVPIVGMLA 77

Query:   111 SSWLGATVFWLGEWFIKRLPFMKHIYSASKQ-ISAAISPDQNTSAFKEVAIIRHPRLGEY 169
             ++++G  +    E    ++P  + +Y  SKQ I   + P+++  AFK V + R+P+ G Y
Sbjct:    78 TNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSY 135

Query:   170 AFGFITSSVVLQ-RDHGDEELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIV 227
             A GFIT S   +  +   E+L  V++PT  +   G +  +  ++II  NLSV + ++IIV
Sbjct:   136 ALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYLPEKDIIPLNLSVEDALKIIV 195

Query:   228 SVGMTMPQ 235
             S G+  P+
Sbjct:   196 SGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0429 CHY_0429 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 62/188 (32%), Positives = 105/188 (55%)

Query:    52 FMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARL-GVEIFGLGFLTSILFIFFVGVFA 110
             F+TG  V+ P A+T  + +    F D      +A++ G++I GLG LT  L +  VG+ A
Sbjct:    18 FLTGLAVITPAAITIYILFALFSFFDRPLRGFFAQIFGIDIPGLGVLTVALLVPIVGMLA 77

Query:   111 SSWLGATVFWLGEWFIKRLPFMKHIYSASKQ-ISAAISPDQNTSAFKEVAIIRHPRLGEY 169
             ++++G  +    E    ++P  + +Y  SKQ I   + P+++  AFK V + R+P+ G Y
Sbjct:    78 TNFIGRKILKKFEQLFIKIPVTRSLYKTSKQLIETFLHPERD--AFKSVVLARYPKDGSY 135

Query:   170 AFGFITSSVVLQ-RDHGDEELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIV 227
             A GFIT S   +  +   E+L  V++PT  +   G +  +  ++II  NLSV + ++IIV
Sbjct:   136 ALGFITGSGFDEINEKTREKLLPVFLPTTPNPTSGWLLYLPEKDIIPLNLSVEDALKIIV 195

Query:   228 SVGMTMPQ 235
             S G+  P+
Sbjct:   196 SGGIVQPE 203

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q0C0Q5 HNE_1988 "Putative uncharacterized protein" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 63/216 (29%), Positives = 109/216 (50%)

Query:    44 LQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYA-RLGVEIF------GLGF 96
             L +W+  +F+ G ++  P+  TF++  + I  +DS   P+    L  E +      G G 
Sbjct:    22 LLAWLRARFVAGMLIALPIVATFVILEFLINLIDSRVVPLLPPSLRPETYLDYAVPGFGL 81

Query:    97 LTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSA-F 155
             +  ILF+  VG  A+++LG     L +  + R+P ++ +YS  KQI        NT+  +
Sbjct:    82 IILILFLTLVGAVATNFLGKFFVDLTDRVLTRVPVVRSVYSVFKQIRDVFQ--NNTAGQY 139

Query:   156 KEVAIIRHPRLGEYAFGFITSSVVLQ-RDHGDEELCSVYVPTN-HLYIGDIFLVNSEEII 213
             KEVA++ +PR G +  GF+   +  + R    E    ++VPT  +   G +  V   +I+
Sbjct:   140 KEVAMVEYPREGSWVIGFVAGPIKGEMRQRLGENFIGIFVPTTPNPTSGFLLYVAEAKIV 199

Query:   214 RPNLSVREGIEIIVSVGMTMPQVISPIERVPAHPGN 249
             R ++SV EG +II S G+ +P    P+   P  P +
Sbjct:   200 RLDMSVEEGAKIIFSGGLVVPDY--PLPGQPLAPNS 233

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5LRR3 SPO2062 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 64/229 (27%), Positives = 117/229 (51%)

Query:    17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFV 76
             TP D E     PPH      R+  +A L++     F+TG VV+ PV +T  + W  + +V
Sbjct:     3 TPFDEE-----PPHV---KPRR--FAGLRA----SFLTGIVVIAPVGLTIWLFWSVVGWV 48

Query:    77 DSFFSPIYAR-------LGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRL 129
             DSF  P+          +G+ + G+G +  ++F   VG  A   +G ++    E  + R+
Sbjct:    49 DSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWIAKGIIGRSLIQYAEGVVDRM 108

Query:   130 PFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV---VLQRDHGD 186
             P ++ +YS  KQIS  +   Q   +F++  +I++PR G +A GF++++    V  +    
Sbjct:   109 PVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIWAIGFVSTTAKGEVADKAETG 167

Query:   187 EELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMP 234
               L SV+VPT  +   G +     E++I  +++V +  ++++S G+  P
Sbjct:   168 GRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVEDAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2062 SPO_2062 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 64/229 (27%), Positives = 117/229 (51%)

Query:    17 TPHDPEDVPKSPPHSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFV 76
             TP D E     PPH      R+  +A L++     F+TG VV+ PV +T  + W  + +V
Sbjct:     3 TPFDEE-----PPHV---KPRR--FAGLRA----SFLTGIVVIAPVGLTIWLFWSVVGWV 48

Query:    77 DSFFSPIYAR-------LGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFIKRL 129
             DSF  P+          +G+ + G+G +  ++F   VG  A   +G ++    E  + R+
Sbjct:    49 DSFVLPLVPHQFRPEQYIGINLRGVGVIFLLVFTIVVGWIAKGIIGRSLIQYAEGVVDRM 108

Query:   130 PFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSV---VLQRDHGD 186
             P ++ +YS  KQIS  +   Q   +F++  +I++PR G +A GF++++    V  +    
Sbjct:   109 PVVRSVYSGIKQISETVFA-QTERSFEQACLIQYPRRGIWAIGFVSTTAKGEVADKAETG 167

Query:   187 EELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMP 234
               L SV+VPT  +   G +     E++I  +++V +  ++++S G+  P
Sbjct:   168 GRLMSVFVPTTPNPTSGFLLYFPEEDVIILDMTVEDAAKLVISAGLVYP 216

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q3Z7T7 DET0989 "Putative uncharacterized protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 53/206 (25%), Positives = 102/206 (49%)

Query:    51 KFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIF-GLGFLTSILFIFFVGVF 109
             +F+TG   + P+     +  W    +D    P+        F GLG L +++ I+ VG+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   110 ASSWLGATVF-WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGE 168
              S++ G  +  W+ +  +K +P    +Y+++KQ+   +      S FKE  ++  PR G 
Sbjct:    75 LSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVSNKVS-FKEAVMVEFPRTGM 132

Query:   169 YAFGFITSSVVLQRDHGDEELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIV 227
             ++  FIT+      +   E+L  VYVP + +   G + L+   +I R N+SV + ++ ++
Sbjct:   133 HSLAFITNETT---NSAGEKLYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAMKTLI 189

Query:   228 SVGMTMPQVISPIE--RVPAHPGNRI 251
             S G+  P  +  I+  +   HP N++
Sbjct:   190 SCGLVFPDNVQAIDVGKGDLHP-NKL 214

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|DET_0989 DET_0989 "conserved hypothetical protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 53/206 (25%), Positives = 102/206 (49%)

Query:    51 KFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIF-GLGFLTSILFIFFVGVF 109
             +F+TG   + P+     +  W    +D    P+        F GLG L +++ I+ VG+ 
Sbjct:    15 RFLTGLAFVLPIGAALGLLIWVFNIIDGLLKPVIEFFFNWYFPGLGLLVTLVLIYLVGLI 74

Query:   110 ASSWLGATVF-WLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGE 168
              S++ G  +  W+ +  +K +P    +Y+++KQ+   +      S FKE  ++  PR G 
Sbjct:    75 LSNYFGKQILGWVDKILVK-VPIFNQVYNSAKQVIETLGVSNKVS-FKEAVMVEFPRTGM 132

Query:   169 YAFGFITSSVVLQRDHGDEELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSVREGIEIIV 227
             ++  FIT+      +   E+L  VYVP + +   G + L+   +I R N+SV + ++ ++
Sbjct:   133 HSLAFITNETT---NSAGEKLYLVYVPGSPNPTSGFLELLRENQIERVNVSVEDAMKTLI 189

Query:   228 SVGMTMPQVISPIE--RVPAHPGNRI 251
             S G+  P  +  I+  +   HP N++
Sbjct:   190 SCGLVFPDNVQAIDVGKGDLHP-NKL 214

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__3710__AT1G43130.1 annotation not avaliable (261 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
COG2928	222	COG2928, COG2928, Uncharacterized conserved protei	7e-31
pfam04367	108	pfam04367, DUF502, Protein of unknown function (DU	1e-27

>gnl|CDD|225480 COG2928, COG2928, Uncharacterized conserved protein [Function unknown]

 Score =  113 bits (286), Expect = 7e-31
 Identities = 60/209 (28%), Positives = 108/209 (51%), Gaps = 12/209 (5%)

Query: 50  KKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSP-------IYARLGVEIFGLGFLTSILF 102
           K F+TG +VL P+A+T  V  W    +D F  P               I GLG + +I+ 
Sbjct: 8   KYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIIL 67

Query: 103 IFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIR 162
           IF +G  A + +G ++  LG+  ++R+P +K IY ++KQ+   +  DQ + +FK+V ++ 
Sbjct: 68  IFLLGFLARNMIGRSLLSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVE 126

Query: 163 HPRLGEYAFGFITS--SVVLQRDHGDEELCSVYVPTN-HLYIGDIFLVNSEEIIRPNLSV 219
            PR G +A  F+T   +  L+   G   + +V+VPT  +   G + LV  E+I+  +++V
Sbjct: 127 FPRRGIWAIAFVTGEKAGELKEKEGR-PMVAVFVPTTPNPTSGFLLLVPKEDIVPLDMTV 185

Query: 220 REGIEIIVSVGMTMPQVISPIERVPAHPG 248
            + ++ I+S G+  P  +   +       
Sbjct: 186 EDALKYIISGGVVAPDSLPAKDLELLPED 214

Length = 222

>gnl|CDD|218047 pfam04367, DUF502, Protein of unknown function (DUF502)

 Score =  101 bits (255), Expect = 1e-27
 Identities = 34/102 (33%), Positives = 62/102 (60%), Gaps = 2/102 (1%)

Query: 96  FLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAF 155
            + ++L IF VG+ A +++G  +  LGE  + R+P ++ IYS+ KQ+   +  D+  S F
Sbjct: 1   LILTLLLIFLVGLLARNFIGRWLLSLGERLLNRIPLVRSIYSSVKQLVETLLGDKKKS-F 59

Query: 156 KEVAIIRHPRLGEYAFGFITSSVVLQ-RDHGDEELCSVYVPT 196
           ++V ++ +PR G +A GF+T     +  +   E+L +V+VPT
Sbjct: 60  RKVVLVEYPRPGLWAIGFVTGEDGGELPERLGEDLVAVFVPT 101

Predicted to be an integral membrane protein. Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG2928	222	Uncharacterized conserved protein [Function unknow	100.0
PF04367	108	DUF502: Protein of unknown function (DUF502); Inte	99.97
PRK15350	88	type III secretion system protein SsaS; Provisiona	88.98
cd01277	103	HINT_subgroup HINT (histidine triad nucleotide-bin	88.34
TIGR02120	399	GspF general secretion pathway protein F. This mem	88.32
PRK05700	89	fliQ flagellar biosynthesis protein FliQ; Validate	87.77
TIGR01402	88	fliQ flagellar biosynthetic protein FliQ. This mod	86.34
PRK06010	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	85.67
cd01275	126	FHIT FHIT (fragile histidine family): FHIT protein	84.42
PF08566	173	Pam17: Mitochondrial import protein Pam17; InterPr	83.94
PRK12781	88	fliQ flagellar biosynthesis protein FliQ; Reviewed	83.56
cd00468	86	HIT_like HIT family: HIT (Histidine triad) protein	83.32
COG1459	397	PulF Type II secretory pathway, component PulF [Ce	83.02
TIGR01403	81	fliQ_rel_III type III secretion protein, HrpO fami	82.62
PRK09824	627	PTS system beta-glucoside-specific transporter sub	81.56

>COG2928 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.7e-56  Score=391.67  Aligned_cols=194  Identities=30%  Similarity=0.635  Sum_probs=176.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-------hcccchhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 025146           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYA-------RLGVEIFGLGFLTSILFIFFVGVFASSWLGATV  118 (257)
Q Consensus        46 ~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~-------~lg~~ipglglli~llli~liG~La~~~~g~~l  118 (257)
                      +.+||+|++||++++|+++|+|+++|+++++|+++.|.+.       +++.+++|+|+++.+++++++|++++|.+||++
T Consensus         4 ~~lk~~fltGLlvllPlaiT~~vv~~i~~~l~~~~~~~lp~~~~~~~~~~~~i~~lg~il~iili~l~G~l~~~~ig~~l   83 (222)
T COG2928           4 KRLKKYFLTGLLVLLPLAITLWVVSWIFGLLDQFVGPLLPDRLRPAVYFPFNIPGLGVILAIILIFLLGFLARNMIGRSL   83 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhchhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            4478889999999999999999999999999999998652       346678999999999999999999999999999


Q ss_pred             HHHHHHHhcccccchhhHHHHHHHHHHhCCCCCCCCcCcEEEEEeCCCCeeEEEEEccccccc-cCCCCCCeEEEEecCC
Q 025146          119 FWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFITSSVVLQ-RDHGDEELCSVYVPTN  197 (257)
Q Consensus       119 ~~~~e~ll~rIPlvksIY~siKql~~~~~~~~~~~~f~~VVLVe~P~~g~~~iGFvT~~~~~~-~~~~~~~~v~VfvPts  197 (257)
                      ++++|++|+|||++|+||+++||+++++.+++ ..+||+||+||||++|+|++||+|++...+ ....++++++||+||+
T Consensus        84 ~~~~d~~L~RiPlv~~IY~s~kqi~etll~~~-~~sfk~vvlVefP~~G~~~i~fvtg~~~~e~~~~~~~~~v~VfvPTT  162 (222)
T COG2928          84 LSLGDSLLRRIPLVKSIYKSAKQVVETLLSDQ-SGSFKQVVLVEFPRRGIWAIAFVTGEKAGELKEKEGRPMVAVFVPTT  162 (222)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHHHHHHHhcC-CccceeeEEEECCCCCcEEEEEeccCCCcchhcccCCceEEEEcCCC
Confidence            99999999999999999999999999999864 458999999999999999999999986432 2244679999999999


Q ss_pred             C-CCCceEEEEecCCeecCCCCHHHHHHHHhhhcccCCCCCCCC
Q 025146          198 H-LYIGDIFLVNSEEIIRPNLSVREGIEIIVSVGMTMPQVISPI  240 (257)
Q Consensus       198 P-ptsG~l~~Vp~~~V~~lDmsvEeAmk~iiS~Gv~~p~~~~~~  240 (257)
                      | |||||+++||+||++++|||+|||+|+++|||++.|+.....
T Consensus       163 PNPTsGfl~~Vpkedi~~ldmtvEda~k~iIS~G~v~p~~~~~~  206 (222)
T COG2928         163 PNPTSGFLLLVPKEDIVPLDMTVEDALKYIISGGVVAPDSLPAK  206 (222)
T ss_pred             CCCCcceEEEEEHHHceeccccHHHHhheeeeccccCCCccccc
Confidence            9 899999999999999999999999999999999999855443

>PF04367 DUF502: Protein of unknown function (DUF502); InterPro: IPR007462 This entry contains proteins that are predicted to be integral membrane proteins

Probab=99.97  E-value=3.2e-31  Score=211.89  Aligned_cols=106  Identities=34%  Similarity=0.635  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccchhhHHHHHHHHHHhCCCCCCCCcCcEEEEEeCCCCeeEEEEEc
Q 025146           96 FLTSILFIFFVGVFASSWLGATVFWLGEWFIKRLPFMKHIYSASKQISAAISPDQNTSAFKEVAIIRHPRLGEYAFGFIT  175 (257)
Q Consensus        96 lli~llli~liG~La~~~~g~~l~~~~e~ll~rIPlvksIY~siKql~~~~~~~~~~~~f~~VVLVe~P~~g~~~iGFvT  175 (257)
                      +++++++||++|+++++++|+++++++|+++.|||+||+||+++||++++|+++++ ++|++||+||||++|+|++||+|
T Consensus         1 ~l~~l~~i~~iG~l~~~~~g~~l~~~~e~ll~riP~v~~iY~~~k~~~~~~~~~~~-~~f~~vVlV~~p~~g~~~igFvT   79 (108)
T PF04367_consen    1 FLILLLLIFLIGLLARNYFGKWLLNWLERLLQRIPLVKSIYSSIKQLVESFSGDKK-KSFKKVVLVEFPRPGMYVIGFVT   79 (108)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHhhccc-ccCCeEEEEEecCCCcEEEEEEe
Confidence            35788999999999999999999999999999999999999999999999998754 45999999999999999999999


Q ss_pred             cccccc-cCCCCCCeEEEEecCCC-CCCc
Q 025146          176 SSVVLQ-RDHGDEELCSVYVPTNH-LYIG  202 (257)
Q Consensus       176 ~~~~~~-~~~~~~~~v~VfvPtsP-ptsG  202 (257)
                      ++...+ ....++++++||+|||| ||+|
T Consensus        80 ~~~~~~~~~~~~~~~v~VfvPtsPnPtsG  108 (108)
T PF04367_consen   80 GEDPGELPGKTGEEMVAVFVPTSPNPTSG  108 (108)
T ss_pred             ccCcchhhccCCCCEEEEEeCCCCCCCCC
Confidence            987532 22234699999999999 5887

>PRK15350 type III secretion system protein SsaS; Provisional

Probab=88.98  E-value=9.4  Score=29.79  Aligned_cols=79  Identities=16%  Similarity=0.228  Sum_probs=53.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025146           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (257)
Q Consensus        46 ~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~l  125 (257)
                      ...++.+...+.+.+|+.+.-.++.-+++.+....+ +-+      .-++++-=++.++++-+++-.|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~TQ-IQE------qTLsFvPKliav~~~l~~~gpWm~~~l~~ft~~i   80 (88)
T PRK15350          8 QFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQ-IQD------QTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777999999999999988888876665543321 000      1234444444555555566677788888999999


Q ss_pred             hccccc
Q 025146          126 IKRLPF  131 (257)
Q Consensus       126 l~rIPl  131 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK15350         81 MLRIGE   86 (88)
T ss_pred             HHhhhh
Confidence            999884

>cd01277 HINT_subgroup HINT (histidine triad nucleotide-binding protein) subgroup: Members of this CD belong to the superfamily of histidine triad hydrolases that act on alpha-phosphate of ribonucleotides

Probab=88.34  E-value=0.95  Score=34.46  Aligned_cols=41  Identities=15%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025146          186 DEELCSVYVPTNHLYIGDIFLVNSEEIIRP-NLSVREGIEII  226 (257)
Q Consensus       186 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  226 (257)
                      +++...+|+|-.|..-|.++++|++-+..+ |++.||...+.
T Consensus        19 e~~~~~a~~~~~~~~pg~~lI~Pk~H~~~~~~l~~~e~~~l~   60 (103)
T cd01277          19 EDDHVLAFLDINPASKGHTLVIPKKHYENLLDLDPEELAELI   60 (103)
T ss_pred             eCCCEEEEECCCCCCCeeEEEEeccccCChhhCCHHHHHHHH
Confidence            467889999999998999999999999766 89998765554

This subgroup includes members from all three forms of cellular life. Although the biochemical function has not been characterised for many of the members of this subgroup, the proteins from Yeast have been shown to be involved in secretion, peroxisome formation and gene expression.

>TIGR02120 GspF general secretion pathway protein F

Probab=88.32  E-value=6.2  Score=37.65  Aligned_cols=23  Identities=13%  Similarity=0.094  Sum_probs=18.2

Q ss_pred             HHHHHHHHHhcccccchhhHHHH
Q 025146          117 TVFWLGEWFIKRLPFMKHIYSAS  139 (257)
Q Consensus       117 ~l~~~~e~ll~rIPlvksIY~si  139 (257)
                      +.-.++|+++.|||+++++|...
T Consensus       242 ~~r~~~~~~l~kiP~~g~~~~~~  264 (399)
T TIGR02120       242 AFRLRFDRRLLRLPVIGRLVRGL  264 (399)
T ss_pred             HHHHHHHHHHhcccchHHHHHHH
Confidence            34457899999999999998643

This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.

>PRK05700 fliQ flagellar biosynthesis protein FliQ; Validated

Probab=87.77  E-value=11  Score=29.34  Aligned_cols=79  Identities=14%  Similarity=0.254  Sum_probs=54.2

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025146           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (257)
Q Consensus        46 ~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~l  125 (257)
                      ...++.+...+...+|+.++-.++.-+++.+....+     +.  =.-++++-=++.++++-++.-.|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~ls~P~l~~alvVGlvIsi~QA~TQ-----Iq--EqTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (89)
T PRK05700          8 DLFREAMKVALMLAAPLLLVALVVGLVVSIFQAATQ-----IN--EQTLSFIPKILAVLLTLIIAGPWMLNTLLDYTRTL   80 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446777899999999999988888866665543321     10  01234444445555555566678888899999999


Q ss_pred             hccccc
Q 025146          126 IKRLPF  131 (257)
Q Consensus       126 l~rIPl  131 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (89)
T PRK05700         81 FSNIPT   86 (89)
T ss_pred             HHHHHh
Confidence            999985

>TIGR01402 fliQ flagellar biosynthetic protein FliQ

Probab=86.34  E-value=14  Score=28.83  Aligned_cols=79  Identities=15%  Similarity=0.220  Sum_probs=53.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025146           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (257)
Q Consensus        46 ~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~l  125 (257)
                      ...++.+...+.+.+|+.+.-.++.-+++.+....    . +.  =.-++++-=++.++++-+++-.+.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~l~~alvVGlvIsi~QA~T----Q-Iq--EqTLsFvPKliav~~~l~~~gpWm~~~l~~f~~~~   80 (88)
T TIGR01402         8 DLGREAIWLTLLLSAPVLLVALVVGLVISIFQAAT----Q-IQ--EQTLSFIPKIIAILLALALLGPWMLTKLLDFTREI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34677789999999999988888876666553332    1 10  01234444445555555666678888899999999


Q ss_pred             hccccc
Q 025146          126 IKRLPF  131 (257)
Q Consensus       126 l~rIPl  131 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T TIGR01402        81 FQRIPQ   86 (88)
T ss_pred             HHHhhh
Confidence            999986

This model describes FliQ, a protein involved in biosynthesis of bacterial flagella. A related family of proteins, excluded from this model, participates in bacterial type III protein secretion systems.

>PRK06010 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=85.67  E-value=15  Score=28.64  Aligned_cols=79  Identities=19%  Similarity=0.210  Sum_probs=52.0

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025146           46 SWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWF  125 (257)
Q Consensus        46 ~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~l  125 (257)
                      ...++.+...+.+.+|+.+.-.++.-+++.+....+ +-+      .-++++-=++.++++=++.-.|.++.+.++.+++
T Consensus         8 ~l~~~al~~~l~~s~P~L~~alvVGliIsi~QA~TQ-IqE------qTLsFvPKliav~~~l~~~g~Wm~~~l~~f~~~i   80 (88)
T PRK06010          8 DIVRDAIWTVLVASGPAVLAAMVVGVAIALFQALTQ-IQE------MTLTFVPKIVAIFVTLLLTLPFMGAQISAFTLLI   80 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777999999999999988888766665533321 000      1233333344444455555567778888999999


Q ss_pred             hccccc
Q 025146          126 IKRLPF  131 (257)
Q Consensus       126 l~rIPl  131 (257)
                      +.+||-
T Consensus        81 f~~i~~   86 (88)
T PRK06010         81 YSRIAG   86 (88)
T ss_pred             HHhhcc
Confidence            999884

>cd01275 FHIT FHIT (fragile histidine family): FHIT proteins, related to the HIT family carry a motif HxHxH/Qxx (x, is a hydrophobic amino acid), On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified into three branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases

Probab=84.42  E-value=2  Score=34.45  Aligned_cols=44  Identities=16%  Similarity=0.144  Sum_probs=35.6

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHHhhh
Q 025146          186 DEELCSVYVPTNHLYIGDIFLVNSEEIIRP-NLSVREGIEIIVSV  229 (257)
Q Consensus       186 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~iiS~  229 (257)
                      +++.+.+|+|-.|.+.|.++++|++.+..+ |++-||...+.-..
T Consensus        19 e~~~~~~~~~~~p~~~gh~lIiPk~H~~~~~~L~~~e~~~l~~~~   63 (126)
T cd01275          19 RTKHSFAVVNLYPYNPGHVLVVPYRHVPRLEDLTPEEIADLFKLV   63 (126)
T ss_pred             eCCCEEEEEcCCCCCCCcEEEEeccccCChhhCCHHHHHHHHHHH
Confidence            467889999999988999999999999765 89988766554333

Fhit plays a very important role in the development of tumours. Infact, Fhit deletions are among the earliest and most frequent genetic alterations in the development of tumours.

>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix

Probab=83.94  E-value=18  Score=31.61  Aligned_cols=81  Identities=16%  Similarity=0.094  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHH
Q 025146           39 ACYAVLQSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATV  118 (257)
Q Consensus        39 ~~~~~l~~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l  118 (257)
                      +-+.+||+.=+++   .++.-+|.+++-..+.|.|= ...-+.|.-..+|++ |.+...+..+.|-.+|+|+--.+|..+
T Consensus        28 ~~ffkLRk~rrr~---~~~~si~t~~~g~~~g~~yl-~~~~~D~~~~I~GlD-P~~~~g~~t~a~g~lG~L~GP~~G~~v  102 (173)
T PF08566_consen   28 NEFFKLRKSRRRI---NLVSSIPTGLLGSSAGWAYL-STIEIDPTQQIMGLD-PFMVYGLATLACGALGWLVGPSLGNQV  102 (173)
T ss_pred             HHHHHHHHHhhHH---HHHhHHHHHHHHHHHHHHHH-hhccccccccccCcC-HHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence            5556666653443   44555555555555555442 122223333333555 445556666789999999999999988


Q ss_pred             HHHHHH
Q 025146          119 FWLGEW  124 (257)
Q Consensus       119 ~~~~e~  124 (257)
                      ++...+
T Consensus       103 f~l~~r  108 (173)
T PF08566_consen  103 FRLLNR  108 (173)
T ss_pred             HHHHhH
Confidence            877654

The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].

>PRK12781 fliQ flagellar biosynthesis protein FliQ; Reviewed

Probab=83.56  E-value=19  Score=28.08  Aligned_cols=80  Identities=19%  Similarity=0.224  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 025146           45 QSWVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEW  124 (257)
Q Consensus        45 ~~~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~  124 (257)
                      -...++.+...+.+-+|+.+.-.++.-+++.+....    . +.  =.-++++-=++.++++=++.-.+.++.+.++.++
T Consensus         7 i~~~~~al~~~l~ls~P~L~~alvVGlvIsi~QA~T----Q-IQ--EqTLsFvPKliav~~~l~~~~~wm~~~l~~ft~~   79 (88)
T PRK12781          7 LELVRAAIWTIIVASGPAVGAAMLVGIAIALLQALT----Q-IQ--EVTLTFVPKIVVILIVMAVTGSFVGAQIYAFTEM   79 (88)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999988888876666543322    1 10  0123444444455555556667788888999999


Q ss_pred             Hhccccc
Q 025146          125 FIKRLPF  131 (257)
Q Consensus       125 ll~rIPl  131 (257)
                      ++.+||-
T Consensus        80 if~~i~~   86 (88)
T PRK12781         80 VYGRIES   86 (88)
T ss_pred             HHHhhcc
Confidence            9999884

>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides

Probab=83.32  E-value=2  Score=31.33  Aligned_cols=41  Identities=12%  Similarity=0.190  Sum_probs=32.9

Q ss_pred             CCCeEEEEecCCCCCCceEEEEecCCeecC-CCCHHHHHHHH
Q 025146          186 DEELCSVYVPTNHLYIGDIFLVNSEEIIRP-NLSVREGIEII  226 (257)
Q Consensus       186 ~~~~v~VfvPtsPptsG~l~~Vp~~~V~~l-DmsvEeAmk~i  226 (257)
                      +++.+.+|+|-.|...|-++++|++-+..+ |++.|+...+.
T Consensus         3 e~~~~~a~~~~~p~~~gh~lIipk~H~~~~~~l~~~~~~~l~   44 (86)
T cd00468           3 DDEHSFAFVNLKPAAPGHVLVCPKRHVETLPDLDEALLADLV   44 (86)
T ss_pred             ecCcEEEEECCCCCCCCcEEEeCchhhCChhHCCHHHHHHHH
Confidence            467889999999988999999999988665 88876554443

On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.

>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=83.02  E-value=6.7  Score=38.27  Aligned_cols=22  Identities=14%  Similarity=0.157  Sum_probs=17.9

Q ss_pred             HHHHHHHHHhcccccchhhHHH
Q 025146          117 TVFWLGEWFIKRLPFMKHIYSA  138 (257)
Q Consensus       117 ~l~~~~e~ll~rIPlvksIY~s  138 (257)
                      +.-.+.|+++.|+|+++.+...
T Consensus       239 ~~r~~~~~~llrlP~~g~l~~~  260 (397)
T COG1459         239 AGRRRLDRLLLRLPLFGKLVRK  260 (397)
T ss_pred             HHHHHHHhHHhcCCcHHHHHHH
Confidence            4456789999999999998753

>TIGR01403 fliQ_rel_III type III secretion protein, HrpO family

Probab=82.62  E-value=20  Score=27.56  Aligned_cols=77  Identities=12%  Similarity=0.344  Sum_probs=49.3

Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q 025146           47 WVSKKFMTGCVVLFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTSILFIFFVGVFASSWLGATVFWLGEWFI  126 (257)
Q Consensus        47 ~i~~~Fl~GLlvlLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~llli~liG~La~~~~g~~l~~~~e~ll  126 (257)
                      ..++.+...+.+.+|+.+.-.++.-+.+.+....+ +-+      .-++++-=++.++++=++.-.+..+.+.++.++++
T Consensus         5 ~~~~al~~~l~~s~P~L~~alvVGLvIsi~QA~TQ-IqE------qTLsFvPKliav~~~l~~~~pwm~~~l~~f~~~if   77 (81)
T TIGR01403         5 LTNQALLLVLILSLPPVLVAAIVGLLVSLLQALTQ-LQD------QTLPFAIKLIAVFITLMLTAGWLGAEILNFANQIF   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35777889999999999988888766665533321 000      11333333334444444555667778888999999


Q ss_pred             cccc
Q 025146          127 KRLP  130 (257)
Q Consensus       127 ~rIP  130 (257)
                      ++||
T Consensus        78 ~~i~   81 (81)
T TIGR01403        78 TMIP   81 (81)
T ss_pred             hhCC
Confidence            8886

This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FliQ. This model may not identify all type III secretion system FliQ homologs.

>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional

Probab=81.56  E-value=11  Score=39.01  Aligned_cols=69  Identities=13%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhHHHHH-HHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Q 025146           59 LFPVAVTFLVTWWFIEFVDSFFSPIYARLGVEIFGLGFLTS-ILFIFFVGVFASSWLGATVFWLGEWFIKRLP  130 (257)
Q Consensus        59 lLPl~vTi~il~wl~~~vd~~l~pl~~~lg~~ipglglli~-llli~liG~La~~~~g~~l~~~~e~ll~rIP  130 (257)
                      ++|+++++|+..|+-+++++++...++.+  -.|.+.++++ .+.++++|=+.. ++|..+-..+.++...-|
T Consensus       219 ViPiil~v~~~s~iEk~l~K~iP~~l~~i--~~P~ltlli~~pl~l~viGPig~-~i~~~l~~~i~~l~~~~~  288 (627)
T PRK09824        219 VIPIIFSAWLCSILERRLNAWLPSAIKNF--FTPLLCLMVIVPLTFLLIGPLAT-WLSELLAAGYQWLYQAVP  288 (627)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHhhch
Confidence            79999999999999999999876665543  1244444332 234444444432 344444444455554443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00