Citrus Sinensis ID: 025163

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Secondary Structure (PSIPRED)
ccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEcccHHHHHHHHHHccccEEEccccccHHHHHcccEEEEEcccHHHHHHHHHHHHHHccccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHccccccccccccccccHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEEcccccHHHHHHHHHcccEEEEEcccHHHHHHHHHccccccccHHHHHHcccEEEEEccccHHHHHHHHHcccEEEEcccccccccccccEEEEEEcccHHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHccHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAhgatvggspaeVIKKCTITIGMLADPAAALSAITSkgghfleapvsgskqpaetGQLVILSAGEKALYDEAISALNVIGKKAfflgevgngakMKLVVNMIMGCMMNTFSEGLVLAeksgldprtlldvldlggianpmfkgkgptmlqsnyapafplkhqQKDMRLALAlgdenavsmPIAAAANEAFKKARslglgdndfSAVFEVVKDLKRSS
Flexible Loop (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAhgatvggspaeVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARslglgdndfSAVFEVVKDLKRSS
Low Complexity Region (SEG)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIaaaaneafkkaRSLGLGDNDFSAVFEVVKDLKRSS
Disordered region (IsUnstruct)
**VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFL*************GQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPL******MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV*******
Disordered Region (DISOPRED)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV*KDL****
Disordered Region (DISEMBL)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Disordered Region (DISPRO)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q9LSV0	289	Glyoxylate/succinic semia	yes	no	0.976	0.868	0.701	1e-109
F4I907	358	Glyoxylate/succinic semia	no	no	0.988	0.709	0.510	3e-76
Q5ZLS7	553	Putative oxidoreductase G	yes	no	0.961	0.446	0.451	1e-63
Q5RKH0	552	Putative oxidoreductase G	yes	no	0.961	0.447	0.451	2e-63
A4FUF0	553	Putative oxidoreductase G	yes	no	0.961	0.446	0.451	2e-63
Q49A26	553	Putative oxidoreductase G	yes	no	0.961	0.446	0.451	3e-63
Q5R7T2	553	Putative oxidoreductase G	yes	no	0.961	0.446	0.448	5e-63
Q562D5	534	Putative oxidoreductase G	yes	no	0.961	0.462	0.441	7e-62
Q5RKN4	462	Putative oxidoreductase G	yes	no	0.961	0.534	0.421	5e-60
Q922P9	546	Putative oxidoreductase G	yes	no	0.937	0.441	0.444	1e-59

>sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis thaliana GN=GLYR1 PE=1 SV=1

 Score =  396 bits (1017), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/285 (70%), Positives = 226/285 (79%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DP AALS                                  AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLA+KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 240

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 1EC: 1

>sp|F4I907|GLYR2_ARATH Glyoxylate/succinic semialdehyde reductase 2, chloroplastic OS=Arabidopsis thaliana GN=GLYR2 PE=1 SV=1

 Score =  285 bits (728), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 147/288 (51%), Positives = 185/288 (64%), Gaps = 34/288 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + +GFLG+GIMG  ++ NL++ G  VTVWNRT SKCD LV  GA    SP EV   C +T
Sbjct: 67  VSIGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAKYKSSPEEVTATCDLT 126

Query: 61  IGMLADPAAALSA----------------------------------ITSKGGHFLEAPV 86
             MLADP +A+                                    I   G  FLEAPV
Sbjct: 127 FAMLADPESAIDVACGKNGAIFGISSGKGYVDVSTVDVASSILISKQIKDTGALFLEAPV 186

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQL+ L+AG+K LY++A   L+++GK  F+LGEVGNGA MKLVVNMIMG M
Sbjct: 187 SGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGAAMKLVVNMIMGSM 246

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           M +F+EG++L++K GLDP  L++V+  G I  PM+  KGP+M++S Y  AFPLKHQQKDM
Sbjct: 247 MASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVYPTAFPLKHQQKDM 306

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 254
           RLAL L +  + S PIAAAANE +K A+S GL D DFSAV E +K  K
Sbjct: 307 RLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAAK 354

Catalyzes the NADPH-dependent reduction of glyoxylate to glycolate as well as succinic semialdehyde (SSA) to gamma-hydroxybutyrate in vitro. May functions in redox homeostasis and play a role in oxidative stress tolerance by detoxifying glyoxylate and SSA generated in glycolate metabolism and GABA metabolism, respectively.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: n

EC: 1

EC: 1

>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 169/281 (60%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 509 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of MAPK14 and specifically regulating MAPK14 signaling.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 169/281 (60%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 387

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 388 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 447

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 448 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 507

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 508 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 548

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 169/281 (60%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3

 Score =  241 bits (616), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 127/281 (45%), Positives = 168/281 (59%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA  +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAHVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 126/281 (44%), Positives = 169/281 (60%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVW+RT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 388

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 389 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 448

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 449 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 508

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 509 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 549

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1

 Score =  237 bits (604), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 124/281 (44%), Positives = 169/281 (60%), Gaps = 34/281 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             +ADP AA                                     I S+GG FLEAPVS
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVS 369

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ +Y++  S    +GK +FFLGEVGN A+M L++NM+ G  M
Sbjct: 370 GNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFM 429

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EG+ LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 430 ATIAEGMTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 489

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 490 LAIALGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 530

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Xenopus tropicalis (taxid: 8364)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 119/282 (42%), Positives = 167/282 (59%), Gaps = 35/282 (12%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
            +GFLGLG+MG  +  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 177 RIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITF 236

Query: 62  GMLADPAAAL----------------------------------SAITSKGGHFLEAPVS 87
             ++DP AA                                     ITS+GG FLEAPVS
Sbjct: 237 SCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVITSRGGRFLEAPVS 296

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGCM 146
           GS+Q +  G LVI++AG++++Y++  S    +GK +FF+ GE GN A+M L++NM+ G  
Sbjct: 297 GSQQLSNDGMLVIVAAGDRSVYEDCSSCFQAMGKTSFFIAGEAGNAARMMLILNMVQGSF 356

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           M T +EGL LA+ +G   +T LD+L  G +A+     K   +LQ N+ P + LKH QKD+
Sbjct: 357 MATIAEGLTLAQATGQSQQTFLDILCQGQMASTFVDQKCQNILQGNFKPDYYLKHIQKDL 416

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           RLA+++GD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 417 RLAISMGDSVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 458

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of mapk14 and specifically regulating mapk14 signaling.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q922P9|GLYR1_MOUSE Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1

 Score =  229 bits (585), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 125/281 (44%), Positives = 166/281 (59%), Gaps = 40/281 (14%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  K       GA +G +PAEV+  C IT 
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITF 321

Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 322 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 381

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 382 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 441

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 442 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 501

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           LA+ALGD      P+AAAANE +K+A++L   DND SAV+ 
Sbjct: 502 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 542

May have oxidoreductase activity. Regulates p38 MAP kinase activity by mediating stress activation of p38alpha/MAPK14 and specifically regulating MAPK14 signaling. Indirectly promotes phosphorylation of MAPK14 and activation of ATF2. The phosphorylation of MAPK14 requires upstream activity of MAP2K4 and MAP2K6. Recruited on chromatin, recognizes and binds trimethylated 'Lys-36' of histone H3 (H3K36me3).

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
225468852	287	PREDICTED: putative oxidoreductase GLYR1	1.0	0.895	0.728	1e-114
225468850	291	PREDICTED: putative oxidoreductase GLYR1	1.0	0.883	0.718	1e-114
224129290	289	predicted protein [Populus trichocarpa]	0.976	0.868	0.715	1e-112
356560591	280	PREDICTED: putative oxidoreductase GLYR1	1.0	0.917	0.717	1e-110
79313434	278	glyoxylate reductase 1 [Arabidopsis thal	0.976	0.902	0.729	1e-109
356560589	290	PREDICTED: putative oxidoreductase GLYR1	1.0	0.886	0.693	1e-109
255567180	289	3-hydroxyisobutyrate dehydrogenase, puta	0.976	0.868	0.708	1e-109
222423230	278	AT3G25530 [Arabidopsis thaliana]	0.976	0.902	0.726	1e-108
356520316	290	PREDICTED: putative oxidoreductase GLYR1	1.0	0.886	0.693	1e-108
15375068	289	gamma hydroxybutyrate dehydrogenase [Ara	0.976	0.868	0.701	1e-108

>gi|225468852|ref|XP_002266296.1| PREDICTED: putative oxidoreductase GLYR1 isoform 2 [Vitis vinifera]

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/287 (72%), Positives = 237/287 (82%), Gaps = 30/287 (10%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+S+NL+R+GFK+TVWNRTLSKCDELV  GA++G +PA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYT 60

Query: 61  IGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSK 90
           I ML+DP+ ALS                              AITSKGG FLEAPVSGSK
Sbjct: 61  IAMLSDPSVALSVNGVLEQICHGKGYIDMSTVGADTSSKISEAITSKGGSFLEAPVSGSK 120

Query: 91  QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
           +PAE GQLVIL+AGEKALYDEAI A +++GKK+FFLG+VGNGAKMKLVVNMIMG MMN F
Sbjct: 121 KPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFLGQVGNGAKMKLVVNMIMGSMMNAF 180

Query: 151 SEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLAL 210
           SEGLVLA++SGL+P TLLDVLDLGGIANPMF+ KGPTM+Q+NY+PAFPLKHQQKDMRLAL
Sbjct: 181 SEGLVLADRSGLNPHTLLDVLDLGGIANPMFRLKGPTMIQNNYSPAFPLKHQQKDMRLAL 240

Query: 211 ALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
           ALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV+E VK L+ SS
Sbjct: 241 ALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVYETVKTLEHSS 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225468850|ref|XP_002266252.1| PREDICTED: putative oxidoreductase GLYR1 isoform 1 [Vitis vinifera] gi|147861759|emb|CAN78910.1| hypothetical protein VITISV_032948 [Vitis vinifera] gi|297736660|emb|CBI25677.3| unnamed protein product [Vitis vinifera]

 Score =  416 bits (1070), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 209/291 (71%), Positives = 237/291 (81%), Gaps = 34/291 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+S+NL+R+GFK+TVWNRTLSKCDELV  GA++G +PA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSINLIRSGFKLTVWNRTLSKCDELVELGASIGETPAAVVKKCNYT 60

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DP+ ALS                                  AITSKGG FLEAPV
Sbjct: 61  IAMLSDPSVALSVVFDKDGVLEQICHGKGYIDMSTVGADTSSKISEAITSKGGSFLEAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQLVIL+AGEKALYDEAI A +++GKK+FFLG+VGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKKPAEDGQLVILAAGEKALYDEAIPAFDIMGKKSFFLGQVGNGAKMKLVVNMIMGSM 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLA++SGL+P TLLDVLDLGGIANPMF+ KGPTM+Q+NY+PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADRSGLNPHTLLDVLDLGGIANPMFRLKGPTMIQNNYSPAFPLKHQQKDM 240

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
           RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV+E VK L+ SS
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVYETVKTLEHSS 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129290|ref|XP_002320548.1| predicted protein [Populus trichocarpa] gi|222861321|gb|EEE98863.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 204/285 (71%), Positives = 235/285 (82%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKC+ELV  GA++G +PA+V+KKC +T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCNELVEFGASIGETPAQVVKKCRLT 60

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DPAAALS                                  AITSKGG FLEAPV
Sbjct: 61  IAMLSDPAAALSVVFDKDGVLEQIDSGKGYIDMSTVDPETSSKISQAITSKGGAFLEAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSKQPAETGQLVIL+AG+K LY+E+I A +V+GKK+FFLG+VGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKQPAETGQLVILAAGDKGLYEESIPAFDVLGKKSFFLGQVGNGAKMKLVVNMIMGSM 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVL+E+SGL+P  LLD+LDLGGIANPMF+GKGP ML+SN++PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLSERSGLNPHDLLDILDLGGIANPMFRGKGPAMLKSNHSPAFPLKHQQKDM 240

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+AAAANE+FKKARS+GLGD DFSAV E++K
Sbjct: 241 RLALALGDENAVSMPVAAAANESFKKARSMGLGDLDFSAVHEILK 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560591|ref|XP_003548574.1| PREDICTED: putative oxidoreductase GLYR1-like isoform 2 [Glycine max]

 Score =  403 bits (1035), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 201/280 (71%), Positives = 230/280 (82%), Gaps = 23/280 (8%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+++NLLR+GFKVTVWNRTLSKCDELV HGA+VG +PA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMAINLLRHGFKVTVWNRTLSKCDELVQHGASVGETPATVVKKCKYT 60

Query: 61  IGMLADPAAALS-----------------------AITSKGGHFLEAPVSGSKQPAETGQ 97
           I ML+DP+AALS                       AI +KGG+FLE PVSGSK+PAE GQ
Sbjct: 61  IAMLSDPSAALSHINGKGYIDMSTVNADTSSKISEAIKAKGGYFLEGPVSGSKKPAEDGQ 120

Query: 98  LVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLA 157
           L+IL+AG KALYDE + A +++GKK+FFLGEVGNGAKMKLVVNMIMG MMN FSEG+ LA
Sbjct: 121 LIILAAGHKALYDEVLPAFDILGKKSFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGITLA 180

Query: 158 EKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENA 217
           E+SGL+P TLLDVLDLG I+N MFK KGPTMLQ++Y+PAFPLKHQQKDMRLALALGDENA
Sbjct: 181 ERSGLNPGTLLDVLDLGAISNGMFKLKGPTMLQNSYSPAFPLKHQQKDMRLALALGDENA 240

Query: 218 VSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
           VSMP+AAAANEAFKKARS+GLGD DFSAV E +K    SS
Sbjct: 241 VSMPVAAAANEAFKKARSMGLGDLDFSAVHETLKAPDHSS 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79313434|ref|NP_001030765.1| glyoxylate reductase 1 [Arabidopsis thaliana] gi|332643501|gb|AEE77022.1| glyoxylate reductase 1 [Arabidopsis thaliana]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/274 (72%), Positives = 226/274 (82%), Gaps = 23/274 (8%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALS-----------------------AITSKGGHFLEAPVSGSKQPAETGQ 97
           I ML+DP AALS                       AIT KGG F+E PVSGSK+PAE GQ
Sbjct: 61  IAMLSDPCAALSICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQ 120

Query: 98  LVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLA 157
           L+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG MMN FSEGLVLA
Sbjct: 121 LIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA 180

Query: 158 EKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENA 217
           +KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDMRLALALGDENA
Sbjct: 181 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENA 240

Query: 218 VSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           VSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 VSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560589|ref|XP_003548573.1| PREDICTED: putative oxidoreductase GLYR1-like isoform 1 [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 230/290 (79%), Gaps = 33/290 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+++NLLR+GFKVTVWNRTLSKCDELV HGA+VG +PA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMAINLLRHGFKVTVWNRTLSKCDELVQHGASVGETPATVVKKCKYT 60

Query: 61  IGMLADPAAALS---------------------------------AITSKGGHFLEAPVS 87
           I ML+DP+AALS                                 AI +KGG+FLE PVS
Sbjct: 61  IAMLSDPSAALSVVFDNDGVLEHINGKGYIDMSTVNADTSSKISEAIKAKGGYFLEGPVS 120

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           GSK+PAE GQL+IL+AG KALYDE + A +++GKK+FFLGEVGNGAKMKLVVNMIMG MM
Sbjct: 121 GSKKPAEDGQLIILAAGHKALYDEVLPAFDILGKKSFFLGEVGNGAKMKLVVNMIMGSMM 180

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
           N FSEG+ LAE+SGL+P TLLDVLDLG I+N MFK KGPTMLQ++Y+PAFPLKHQQKDMR
Sbjct: 181 NAFSEGITLAERSGLNPGTLLDVLDLGAISNGMFKLKGPTMLQNSYSPAFPLKHQQKDMR 240

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
           LALALGDENAVSMP+AAAANEAFKKARS+GLGD DFSAV E +K    SS
Sbjct: 241 LALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVHETLKAPDHSS 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567180|ref|XP_002524571.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis] gi|223536124|gb|EEF37779.1| 3-hydroxyisobutyrate dehydrogenase, putative [Ricinus communis]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/285 (70%), Positives = 228/285 (80%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA++ NL+++GFKVTVWNRTLSKC ELV  GA++G SPA V+KKC  T
Sbjct: 1   MEVGFLGLGIMGKAMATNLIKSGFKVTVWNRTLSKCSELVNLGASIGESPAAVVKKCKTT 60

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I M++DPAAALS                                  AIT+KGG FLEAPV
Sbjct: 61  IAMISDPAAALSVAFDKDGVLEEICSGKGYIDMSTVSPETSIKISSAITAKGGSFLEAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSKQPAE GQLVIL+AG+KALYD AI A +V+GKK+FFLGEVGNGAKMKLVVNMIMG M
Sbjct: 121 SGSKQPAEAGQLVILAAGDKALYDAAIPAFDVMGKKSFFLGEVGNGAKMKLVVNMIMGSM 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLAEKSGLDP  LL V+DLGGIANPMF+GKGP ML+ N++ +FPLKHQQKDM
Sbjct: 181 MNAFSEGLVLAEKSGLDPYDLLGVVDLGGIANPMFRGKGPAMLKGNHSTSFPLKHQQKDM 240

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+AAAANEAFKKARS+GLGD DFSAV+E+VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVYEIVK 285

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222423230|dbj|BAH19592.1| AT3G25530 [Arabidopsis thaliana]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 199/274 (72%), Positives = 225/274 (82%), Gaps = 23/274 (8%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALS-----------------------AITSKGGHFLEAPVSGSKQPAETGQ 97
           I ML+DP AALS                       AIT KGG F+E PVSGSK+PAE GQ
Sbjct: 61  IAMLSDPCAALSICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQ 120

Query: 98  LVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLA 157
           L+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG MMN FSEGLVLA
Sbjct: 121 LIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA 180

Query: 158 EKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENA 217
           +KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDMRLALALGDENA
Sbjct: 181 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENA 240

Query: 218 VSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           VSMP+AAAANE FKKARSLGLGD DFSAV E VK
Sbjct: 241 VSMPVAAAANEVFKKARSLGLGDLDFSAVIEAVK 274

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520316|ref|XP_003528809.1| PREDICTED: putative oxidoreductase GLYR1-like [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/290 (69%), Positives = 230/290 (79%), Gaps = 33/290 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           ME GFLGLGIMGKA+++NLLR+GFKVT+WNRTLSKCDELV HGA+VG +PA V+KKC  T
Sbjct: 1   MEFGFLGLGIMGKAMAINLLRHGFKVTIWNRTLSKCDELVQHGASVGETPATVVKKCKYT 60

Query: 61  IGMLADPAAALS---------------------------------AITSKGGHFLEAPVS 87
           I ML+DP+AALS                                  I +KGG+FLEAPVS
Sbjct: 61  IAMLSDPSAALSVVFDKDGVLEHINGKCYIDMSTVDADTSSKISETIKAKGGYFLEAPVS 120

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           GSK+PAE GQL+IL+AG+KALYDE + A +V+GKK+FFLGEVGNGAKMKLVVNMIMG MM
Sbjct: 121 GSKKPAEDGQLIILAAGDKALYDEVLPAFDVLGKKSFFLGEVGNGAKMKLVVNMIMGSMM 180

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
           N FSEGL LAE+SGL+P TLLDVLDLG I+N MFK KGPTMLQ++Y+PAFPLKHQQKDMR
Sbjct: 181 NAFSEGLTLAERSGLNPGTLLDVLDLGAISNGMFKLKGPTMLQNSYSPAFPLKHQQKDMR 240

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
           LALALGDENAVSMP+AAAANEAFKKARS+GLGD DFSAV E +K    SS
Sbjct: 241 LALALGDENAVSMPVAAAANEAFKKARSMGLGDLDFSAVHETLKAPDHSS 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15375068|gb|AAK94781.1| gamma hydroxybutyrate dehydrogenase [Arabidopsis thaliana]

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/285 (70%), Positives = 226/285 (79%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 1   MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 60

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DP AALS                                  AIT KGG F+E PV
Sbjct: 61  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 121 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLA+KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 181 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMTKSSYPPAFPLKHQQKDM 240

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 241 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
TAIR|locus:2094518	289	GLYR1 "glyoxylate reductase 1"	0.696	0.619	0.715	4.2e-98
TAIR|locus:2007923	358	GLYR2 "glyoxylate reductase 2"	0.704	0.505	0.558	1.1e-68
TIGR_CMR|GSU_1372	286	GSU_1372 "3-hydroxyisobutyrate	0.700	0.629	0.511	1.4e-64
UNIPROTKB|F1NFS2	575	GLYR1 "Putative oxidoreductase	0.747	0.333	0.448	2.3e-58
UNIPROTKB|F1NFS3	553	GLYR1 "Putative oxidoreductase	0.747	0.347	0.448	2.3e-58
UNIPROTKB|Q5ZLS7	553	GLYR1 "Putative oxidoreductase	0.747	0.347	0.448	2.3e-58
UNIPROTKB|A4FUF0	553	GLYR1 "Putative oxidoreductase	0.747	0.347	0.448	2.9e-58
UNIPROTKB|E2QVM3	575	GLYR1 "Uncharacterized protein	0.747	0.333	0.448	2.9e-58
UNIPROTKB|F1RK86	553	GLYR1 "Uncharacterized protein	0.747	0.347	0.448	2.9e-58
UNIPROTKB|I3LMN3	539	GLYR1 "Uncharacterized protein	0.747	0.356	0.448	2.9e-58

TAIR|locus:2094518 GLYR1 "glyoxylate reductase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 666 (239.5 bits), Expect = 4.2e-98, Sum P(2) = 4.2e-98
 Identities = 128/179 (71%), Positives = 150/179 (83%)

Query:    73 AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNG 132
             AIT KGG F+E PVSGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNG
Sbjct:   107 AITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNG 166

Query:   133 AKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSN 192
             AKMKL+VNMIMG MMN FSEGLVLA+KSGL   TLLD+LDLG + NPMFKGKGP+M +S+
Sbjct:   167 AKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSS 226

Query:   193 YAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
             Y PAFPLKHQQKDMRLALALGDENAVSMP+           RSLGLGD DFSAV E VK
Sbjct:   227 YPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 285

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0006573 "valine metabolic process" evidence=IEA

GO:0008442 "3-hydroxyisobutyrate dehydrogenase activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003858 "3-hydroxybutyrate dehydrogenase activity" evidence=IMP

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2007923 GLYR2 "glyoxylate reductase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.1e-68, Sum P(2) = 1.1e-68
 Identities = 101/181 (55%), Positives = 128/181 (70%)

Query:    74 ITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGA 133
             I   G  FLEAPVSGSK+PAE GQL+ L+AG+K LY++A   L+++GK  F+LGEVGNGA
Sbjct:   174 IKDTGALFLEAPVSGSKKPAEDGQLIFLTAGDKPLYEKAAPFLDIMGKSKFYLGEVGNGA 233

Query:   134 KMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNY 193
              MKLVVNMIMG MM +F+EG++L++K GLDP  L++V+  G I  PM+  KGP+M++S Y
Sbjct:   234 AMKLVVNMIMGSMMASFAEGILLSQKVGLDPNVLVEVVSQGAINAPMYSLKGPSMIKSVY 293

Query:   194 APAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKDL 253
               AFPLKHQQKDMRLAL L +  + S PI           +S GL D DFSAV E +K  
Sbjct:   294 PTAFPLKHQQKDMRLALGLAESVSQSTPIAAAANELYKVAKSYGLSDEDFSAVIEALKAA 353

Query:   254 K 254
             K
Sbjct:   354 K 354

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TIGR_CMR|GSU_1372 GSU_1372 "3-hydroxyisobutyrate dehydrogenase family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 465 (168.7 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 92/180 (51%), Positives = 120/180 (66%)

Query:    72 SAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGN 131
             +A+T++GG FLEAPVSG+K+PAE G L+IL+AG+++L+ +A  A   +GKK   LGEVG 
Sbjct:   107 AAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQ 166

Query:   132 GAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQS 191
             GA+MKLVVNMIMG MM    EG+ L    GLD   LL+VLD G +ANPMFKGKG  +L  
Sbjct:   167 GARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSG 226

Query:   192 NYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
              +  +FPLKH QKD+RLA+ LGD     +             R+ G  D DF+AVF V++
Sbjct:   227 EFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286

GO:0009063 "cellular amino acid catabolic process" evidence=ISS

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS

GO:0019577 "aldaric acid metabolic process" evidence=ISS

UNIPROTKB|F1NFS2 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   377 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 436

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   437 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 496

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   497 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRA 556

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   557 KALDQSDNDMSAVY 570

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|F1NFS3 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   355 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 414

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   415 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 474

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   475 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRA 534

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   535 KALDQSDNDMSAVY 548

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|Q5ZLS7 GLYR1 "Putative oxidoreductase GLYR1" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   355 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 414

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   415 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 474

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   475 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDSVNHPTPMAAAANEVYKRA 534

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   535 KALDQSDNDMSAVY 548

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

UNIPROTKB|A4FUF0 GLYR1 "Putative oxidoreductase GLYR1" [Bos taurus (taxid:9913)]

 Score = 411 (149.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   355 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 414

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   415 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 474

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   475 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRA 534

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   535 KALDQSDNDMSAVY 548

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E2QVM3 GLYR1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 411 (149.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   377 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 436

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   437 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 496

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   497 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRA 556

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   557 KALDQSDNDMSAVY 570

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1RK86 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 411 (149.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   355 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 414

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   415 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 474

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   475 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRA 534

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   535 KALDQSDNDMSAVY 548

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|I3LMN3 GLYR1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 411 (149.7 bits), Expect = 2.9e-58, Sum P(2) = 2.9e-58
 Identities = 87/194 (44%), Positives = 121/194 (62%)

Query:    56 KCTITIGML-ADPAAALS-AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAI 113
             KC + +  + AD    L+  I S+GG FLEAPVSG++Q +  G LVIL+AG++ LY++  
Sbjct:   341 KCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCS 400

Query:   114 SALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL 173
             S    +GK +FFLGEVGN AKM L+VNM+ G  M T +EGL LA+ +G   +TLLD+L+ 
Sbjct:   401 SCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQ 460

Query:   174 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 233
             G +A+     K   +LQ N+ P F LK+ QKD+RLA+ALGD      P+           
Sbjct:   461 GQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRA 520

Query:   234 RSLGLGDNDFSAVF 247
             ++L   DND SAV+
Sbjct:   521 KALDQSDNDMSAVY 534

GO:0050662 "coenzyme binding" evidence=IEA

GO:0006098 "pentose-phosphate shunt" evidence=IEA

GO:0004616 "phosphogluconate dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSV0	GLYR1_ARATH	1, ., 1, ., 1, ., n, 1, 1	0.7017	0.9766	0.8685	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013336001 SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_463, whole genome shotgun sequence); (291 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	257
COG2084	286	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase	2e-70
PRK11559	296	PRK11559, garR, tartronate semialdehyde reductase;	7e-40
TIGR01505	291	TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona	5e-38
pfam03446	163	pfam03446, NAD_binding_2, NAD binding domain of 6-	9e-30
TIGR01692	288	TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen	1e-28
PRK15059	292	PRK15059, PRK15059, tartronate semialdehyde reduct	1e-24
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	2e-24
PRK15461	296	PRK15461, PRK15461, NADH-dependent gamma-hydroxybu	2e-24
PLN02858	1378	PLN02858, PLN02858, fructose-bisphosphate aldolase	3e-19
PRK09599	301	PRK09599, PRK09599, 6-phosphogluconate dehydrogena	7e-11
COG1023	300	COG1023, Gnd, Predicted 6-phosphogluconate dehydro	2e-10
COG0362	473	COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca	5e-08
TIGR00872	298	TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena	7e-08
PTZ00142	470	PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena	1e-07
TIGR00873	467	TIGR00873, gnd, 6-phosphogluconate dehydrogenase (	3e-07
PRK12490	299	PRK12490, PRK12490, 6-phosphogluconate dehydrogena	7e-06
PLN02350	493	PLN02350, PLN02350, phosphogluconate dehydrogenase	7e-06
PRK09287	459	PRK09287, PRK09287, 6-phosphogluconate dehydrogena	4e-05
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	7e-05
PRK07680	273	PRK07680, PRK07680, late competence protein ComER;	0.004

>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

 Score =  217 bits (556), Expect = 2e-70
 Identities = 98/286 (34%), Positives = 147/286 (51%), Gaps = 35/286 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTI 59
           M++ F+GLGIMG  ++ NLL+ G +VTV+NRT  K  + L A GATV  SPAE   +  +
Sbjct: 1   MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADV 60

Query: 60  TIGMLADPAAALS----------------------------------AITSKGGHFLEAP 85
            I ML D AA  +                                  A+ +KG  FL+AP
Sbjct: 61  VITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAP 120

Query: 86  VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 145
           VSG    A  G L I+  G+   ++ A   L  +GK    +G VG G   KL  N+++  
Sbjct: 121 VSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAG 180

Query: 146 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
            +   +E L LAEK+GLDP  +L+V+  G   + + +  GP ML+ +++P F +    KD
Sbjct: 181 NIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240

Query: 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           + LAL    E    +P+ A A E + KA + G G+ DFSA+ ++++
Sbjct: 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286

Length = 286

>gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional

 Score =  139 bits (352), Expect = 7e-40
 Identities = 82/283 (28%), Positives = 130/283 (45%), Gaps = 40/283 (14%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V++R      E++A GA    +   V ++C + 
Sbjct: 3   MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVI 62

Query: 61  IGMLADP-------------------------------------AAALSAITSKGGHFLE 83
           I ML +                                      AAAL A   KG   L+
Sbjct: 63  ITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKA---KGIEMLD 119

Query: 84  APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143
           APVSG +  A  G L ++  G+KA++D+    +  +       G++G G   KL   +I+
Sbjct: 120 APVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIV 179

Query: 144 GCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 203
              +   SE LVLA K+G++P  +   +  G   + +   K P ++  N+ P F +    
Sbjct: 180 ALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHI 239

Query: 204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAV 246
           KD+  AL         +P+ AA  E  +  ++ GLG  D SA+
Sbjct: 240 KDLANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSAL 282

Length = 296

>gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase

 Score =  134 bits (339), Expect = 5e-38
 Identities = 80/286 (27%), Positives = 131/286 (45%), Gaps = 34/286 (11%)

Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           +VGF+GLGIMG  +S+NL + G+++ V        DEL+A GA    +  +V ++  +  
Sbjct: 1   KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIF 60

Query: 62  GMLADPA-------------------------AALSAITS---------KGGHFLEAPVS 87
            M+ D                           +++S I S         KG  +L+APVS
Sbjct: 61  TMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVS 120

Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G +  A  G L I+  G++A++D        +GK    +G  G+G   K+   +I+   +
Sbjct: 121 GGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNI 180

Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
              SE LV A K+G+DP  +   L  G   + + + KG  ++   + P F +   QKD+ 
Sbjct: 181 EAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240

Query: 208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
           LAL        ++P  A   E F   R+ G G  D SA+ + ++ L
Sbjct: 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291

>gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase

 Score =  109 bits (274), Expect = 9e-30
 Identities = 51/158 (32%), Positives = 75/158 (47%), Gaps = 34/158 (21%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            ++GF+GLG+MG  +++NLL+ G+ VTV+NRT  K +ELVA GA    SPAE +    + 
Sbjct: 1   AKIGFIGLGVMGSPMALNLLKAGYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVV 60

Query: 61  IGMLADPAAALSAITS----------------------------------KGGHFLEAPV 86
           I M+   AA  + I                                    KG HFL+APV
Sbjct: 61  ITMVPAGAAVDAVILGEDGLLPGLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 124
           SG ++ AE G L I+  G++  ++     L  +G    
Sbjct: 121 SGGEEGAEAGTLSIMVGGDEEAFERVKPILEAMGACVT 158

The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163

>gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase

 Score =  109 bits (275), Expect = 1e-28
 Identities = 79/289 (27%), Positives = 115/289 (39%), Gaps = 43/289 (14%)

Query: 5   FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML 64
           F+GLG MG  ++ NLL+ G  V V++      +E VA GA    SPAE  +     I ML
Sbjct: 1   FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITML 60

Query: 65  ---------------------------------ADPAAALSAITSKGGH-FLEAPVSGSK 90
                                             D A  L+ + +  G  F++APVSG  
Sbjct: 61  PAGQHVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGV 120

Query: 91  QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
             A  G L  +  G    +  A   L  +G+     G+ G G   K+  NM++G  M   
Sbjct: 121 GGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGT 180

Query: 151 SEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSN-YAPAFPLKHQ 202
           +E + L EK GLDP+ L ++ +            NP   G  P    SN Y   F     
Sbjct: 181 AEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNP-VPGVMPQAPASNGYQGGFGTALM 239

Query: 203 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
            KD+ LA           P+ A A + +      G G  DFS+V ++++
Sbjct: 240 LKDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288

3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288

>gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional

 Score = 99.3 bits (247), Expect = 1e-24
 Identities = 76/285 (26%), Positives = 131/285 (45%), Gaps = 35/285 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M++GF+GLGIMG  +++NL R G ++ V        DEL++ GA    +  +V +   I 
Sbjct: 1   MKLGFIGLGIMGTPMAINLARAGHQLHV-TTIGPVADELLSLGAVSVETARQVTEASDII 59

Query: 61  IGMLADPA-------------------------AALSAITSK---------GGHFLEAPV 86
             M+ D                           +++S I +K         GG +L+APV
Sbjct: 60  FIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPV 119

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG +  A  G L I+  G++A+++       ++GK    +G  G+G   K+   +I+   
Sbjct: 120 SGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTCKVANQIIVALN 179

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           +   SE L+ A K+G DP  +   L  G  ++ + +  G  M++  + P F +   QKD+
Sbjct: 180 IEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
            LAL      A+++P  A   E F    + G    D SA+ + ++
Sbjct: 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALE 284

Length = 292

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score =  101 bits (254), Expect = 2e-24
 Identities = 74/291 (25%), Positives = 133/291 (45%), Gaps = 43/291 (14%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVT---VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
           +GF+GLG MG  ++ +LL++ F V    V+  TL + +     G   G SPAEV K   +
Sbjct: 327 IGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA---GGLAGNSPAEVAKDVDV 383

Query: 60  TIGMLADP----------AAALSAITS--------------------------KGGHFLE 83
            + M+A+             A+SA+ +                          +    ++
Sbjct: 384 LVIMVANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD 443

Query: 84  APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMI 142
           APVSG  + A  G L I+++G       A S L+ + +K + + G  G G+ +K+V  ++
Sbjct: 444 APVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLL 503

Query: 143 MGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQ 202
            G  + + +E +    + GL+ R L D++   G  + MF+ + P ML ++Y P   L   
Sbjct: 504 AGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIF 563

Query: 203 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
            KD+ +    G    + + ++  A++ F    + G G  D +AV +V + L
Sbjct: 564 VKDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETL 614

Length = 1378

>gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

 Score = 98.4 bits (245), Expect = 2e-24
 Identities = 82/289 (28%), Positives = 126/289 (43%), Gaps = 45/289 (15%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+GLG MG  ++ NLL+ G ++ V++      D LV  GAT   SPA+        I 
Sbjct: 4   IAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVIT 63

Query: 63  MLA-------------------DPAAA---LSAI------------TSKGGHFLEAPVSG 88
           ML                       A    +S I             +KG   ++ PV  
Sbjct: 64  MLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGR 123

Query: 89  SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 148
           +   A TG L++L+ G     + A   L  +G +    G  G G ++KL+ N  M   +N
Sbjct: 124 TSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRVKLI-NNYMSIALN 182

Query: 149 TFS-EGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-----MLQSNYAPAFPLKHQ 202
             S E  VL E  GL     L V+          KG   T     +L+ + +PAF +   
Sbjct: 183 ALSAEAAVLCEALGLSFDVALKVMS----GTAAGKGHFTTTWPNKVLKGDLSPAFMIDLA 238

Query: 203 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
            KD+ +AL + ++  V MP+ AA+ E + +AR+ G G  D+SA+ E V+
Sbjct: 239 HKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVR 287

Length = 296

>gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase

 Score = 86.4 bits (214), Expect = 3e-19
 Identities = 59/284 (20%), Positives = 120/284 (42%), Gaps = 37/284 (13%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           VGF+GL  +   ++ +LLR+GFKV  +  +    ++    G     SPAE  K     + 
Sbjct: 7   VGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVV 66

Query: 63  MLAD------------------PAAALSAITS------------------KGGHFLEAPV 86
           +L+                      A+  I S                  +    ++A V
Sbjct: 67  VLSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYV 126

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMGC 145
           S        G+L+I+++G       A   L+ + +K +   GE+G G+K+K+V  ++ G 
Sbjct: 127 SKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGI 186

Query: 146 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
            +   +E + L  ++G+ P  + D++     ++ +FK   P +L+ +Y     L    ++
Sbjct: 187 HLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQN 246

Query: 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 249
           + + L +       +P+ A A++      S   GD+  +++ +V
Sbjct: 247 LGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKV 290

Length = 1378

>gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 60.5 bits (148), Expect = 7e-11
 Identities = 59/216 (27%), Positives = 85/216 (39%), Gaps = 48/216 (22%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCT-- 58
           M++G +GLG MG  ++  LLR G +V  ++R     + L   GAT   S  E++ K    
Sbjct: 1   MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAP 60

Query: 59  -----------ITIGMLADPAAALSA---------------------ITSKGGHFLEAPV 86
                      IT   + + A  LS                      +  KG HF++   
Sbjct: 61  RVVWLMVPAGEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGT 120

Query: 87  SGSKQPAETGQ-LVILSAGEKALYDEA---ISALNVIGKKAF-FLGEVGNGAKMKLVVNM 141
           SG     E G  L+I   G+K   +       AL    +  +   G VG G  +K+V N 
Sbjct: 121 SGGVWGLERGYCLMI--GGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNG 178

Query: 142 IMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA 177
           I   MM  ++EG  L E S  D       LDL  +A
Sbjct: 179 IEYGMMQAYAEGFELLEASRFD-------LDLAAVA 207

Length = 301

>gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 54/199 (27%), Positives = 80/199 (40%), Gaps = 36/199 (18%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--- 57
           M++G +GLG MG  +   LL  G  V  ++   +  +EL   GAT   S  E++ K    
Sbjct: 1   MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAP 60

Query: 58  ----------TITIGMLADPAAALSA---------------------ITSKGGHFLEAPV 86
                      IT  ++ D A  LSA                     +  KG HFL+   
Sbjct: 61  RIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGT 120

Query: 87  SGSKQPAETGQLVILSAGEKAL--YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG 144
           SG    AE G  +++   E+A+   +    AL        + G  G+G  +K+V N I  
Sbjct: 121 SGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEY 180

Query: 145 CMMNTFSEGLVLAEKSGLD 163
            MM   +EG  L + S  D
Sbjct: 181 GMMQAIAEGFELLKNSPFD 199

Length = 300

>gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 16/41 (39%), Positives = 28/41 (68%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
           ++G +GL +MG  +++N+  +G+ V V+NRT  K DE +A
Sbjct: 4  ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLA 44

Length = 473

>gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 51.8 bits (124), Expect = 7e-08
 Identities = 38/198 (19%), Positives = 66/198 (33%), Gaps = 35/198 (17%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--- 57
           M++G +GLG MG  I   L + G     ++        +     T   +  E+ ++    
Sbjct: 1   MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAP 60

Query: 58  ---------TITIGMLADPAAALSA---------------------ITSKGGHFLEAPVS 87
                     I   +L + A  L                       +  KG H L+   S
Sbjct: 61  RVVWVMVPHGIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTS 120

Query: 88  GSKQPAETGQLVILSAGEKAL--YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 145
           G     E G   ++    +A    +   + +    +   + G  G+G  +K+V N I   
Sbjct: 121 GGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYG 180

Query: 146 MMNTFSEGLVLAEKSGLD 163
           MM   +EG  +   S  D
Sbjct: 181 MMAAIAEGFEILRNSQFD 198

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298

>gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 16/40 (40%), Positives = 29/40 (72%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          ++G +GL +MG+ +++N+   GFK++V+NRT  K +E V 
Sbjct: 3  DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVK 42

Length = 470

>gnl|CDD|129951 TIGR00873, gnd, 6-phosphogluconate dehydrogenase (decarboxylating)

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
          ++G +GL +MG  +++N+  +GF V+V+NRT  K DE +A  A
Sbjct: 1  DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA 43

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason [Energy metabolism, Pentose phosphate pathway]. Length = 467

>gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 49/200 (24%), Positives = 78/200 (39%), Gaps = 38/200 (19%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--- 57
           M++G +GLG MG  ++  L  +G +V  ++      D     G T   S  E++ K    
Sbjct: 1   MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAP 60

Query: 58  ----------TITIGMLADPAAALSA---------------------ITSKGGHFLEAPV 86
                      +T  ++ D    LS                      +  +G H+++   
Sbjct: 61  RTIWVMVPAGEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGT 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDE---AISALNVIGKKAFFLGEVGNGAKMKLVVNMIM 143
           SG       G   ++  G+K +YD       AL   G      G VG+G  +K+V N I 
Sbjct: 121 SGGVWGLRNG-YCLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIE 179

Query: 144 GCMMNTFSEGLVLAEKSGLD 163
             MM  ++EGL L +KS  D
Sbjct: 180 YGMMQAYAEGLELLDKSDFD 199

Length = 299

>gnl|CDD|215200 PLN02350, PLN02350, phosphogluconate dehydrogenase (decarboxylating)

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP 50
           +G  GL +MG+ +++N+   GF ++V+NRT SK DE V      G  P
Sbjct: 8  RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLP 56

Length = 493

>gnl|CDD|236453 PRK09287, PRK09287, 6-phosphogluconate dehydrogenase; Validated

 Score = 44.0 bits (105), Expect = 4e-05
 Identities = 14/31 (45%), Positives = 22/31 (70%)

Query: 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          MGK +++N+  +G+ V V+NRT  K DE +A
Sbjct: 1  MGKNLALNIASHGYTVAVYNRTPEKTDEFLA 31

Length = 459

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 42.9 bits (102), Expect = 7e-05
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT 32
             VG LGLG +G A++  L   GF V+ W+R+
Sbjct: 133 RRVGVLGLGELGAAVARRLAALGFPVSGWSRS 164

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|181080 PRK07680, PRK07680, late competence protein ComER; Validated

 Score = 37.6 bits (88), Expect = 0.004
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVI 54
          M +GF+G G MG  +    L +G     ++T+ NRT +K   +     G  V  +  EVI
Sbjct: 1  MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVI 60

Query: 55 KKCTI 59
           +  +
Sbjct: 61 SQSDL 65

Length = 273

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
KOG0409	327	consensus Predicted dehydrogenase [General functio	100.0
PRK15059	292	tartronate semialdehyde reductase; Provisional	100.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	100.0
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	100.0
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	100.0
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	100.0
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	100.0
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	100.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	100.0
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	100.0
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	99.98
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.97
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.97
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.97
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.95
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.95
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.95
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	99.95
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	99.94
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	99.94
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.94
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.92
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.92
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.91
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	99.91
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	99.89
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.87
PLN02353	473	probable UDP-glucose 6-dehydrogenase	99.87
PLN02688	266	pyrroline-5-carboxylate reductase	99.86
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.85
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.84
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.84
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.83
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	99.83
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.83
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.81
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.81
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.8
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.8
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.79
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.79
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.78
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.78
PRK08507	275	prephenate dehydrogenase; Validated	99.77
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.75
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.74
PRK07417	279	arogenate dehydrogenase; Reviewed	99.74
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.73
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.72
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.72
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.71
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.71
PRK08655	437	prephenate dehydrogenase; Provisional	99.7
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.7
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.69
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.69
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.67
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.67
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.67
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.65
PRK07680	273	late competence protein ComER; Validated	99.62
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.57
PRK06545	359	prephenate dehydrogenase; Validated	99.55
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.54
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.52
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.49
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.48
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.48
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.48
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.47
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.46
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.45
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.44
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	99.44
PLN02256	304	arogenate dehydrogenase	99.43
PLN02712	667	arogenate dehydrogenase	99.43
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.42
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	99.4
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.4
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.4
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	99.38
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.38
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.35
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.34
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	99.33
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.33
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.3
PLN02712	667	arogenate dehydrogenase	99.27
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	99.27
PRK08818	370	prephenate dehydrogenase; Provisional	99.23
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.23
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.22
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	99.09
PRK06444	197	prephenate dehydrogenase; Provisional	99.04
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	99.01
PF00984	96	UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas	98.93
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.91
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.89
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.89
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.87
PRK12480	330	D-lactate dehydrogenase; Provisional	98.86
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.86
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.85
PRK07574	385	formate dehydrogenase; Provisional	98.83
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.83
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.81
PLN03139	386	formate dehydrogenase; Provisional	98.8
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.74
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.74
PRK13243	333	glyoxylate reductase; Reviewed	98.7
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.66
PRK08605	332	D-lactate dehydrogenase; Validated	98.66
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.64
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.64
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	98.63
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.63
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.62
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.58
PRK06141	314	ornithine cyclodeaminase; Validated	98.58
PRK06436	303	glycerate dehydrogenase; Provisional	98.57
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.5
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.49
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.49
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.48
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.46
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.46
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	98.46
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	98.45
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.45
PRK05225	487	ketol-acid reductoisomerase; Validated	98.45
PRK00048	257	dihydrodipicolinate reductase; Provisional	98.42
PLN02928	347	oxidoreductase family protein	98.42
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	98.42
PLN00203	519	glutamyl-tRNA reductase	98.38
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.38
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.38
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.36
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.35
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.35
COG5495	289	Uncharacterized conserved protein [Function unknow	98.34
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.34
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.32
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.31
PRK13303	265	L-aspartate dehydrogenase; Provisional	98.3
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	98.3
PRK06223	307	malate dehydrogenase; Reviewed	98.29
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.29
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.28
COG2910	211	Putative NADH-flavin reductase [General function p	98.27
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.26
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	98.26
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.26
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.25
PRK07340	304	ornithine cyclodeaminase; Validated	98.25
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	98.25
PRK13940	414	glutamyl-tRNA reductase; Provisional	98.25
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.24
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.24
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.24
PRK08291	330	ectoine utilization protein EutC; Validated	98.23
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	98.21
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.21
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.19
COG0673	342	MviM Predicted dehydrogenases and related proteins	98.18
TIGR00036	266	dapB dihydrodipicolinate reductase.	98.18
PRK04148	134	hypothetical protein; Provisional	98.18
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	98.17
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	98.16
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.15
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	98.15
PRK06407	301	ornithine cyclodeaminase; Provisional	98.14
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.14
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.11
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	98.11
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	98.09
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	98.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.08
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.08
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	98.05
PRK06823	315	ornithine cyclodeaminase; Validated	98.04
PLN02494	477	adenosylhomocysteinase	98.02
PRK08618	325	ornithine cyclodeaminase; Validated	98.02
PRK06046	326	alanine dehydrogenase; Validated	98.02
PRK06932	314	glycerate dehydrogenase; Provisional	98.02
PRK06487	317	glycerate dehydrogenase; Provisional	98.02
PRK09496	453	trkA potassium transporter peripheral membrane com	98.02
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	98.01
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	98.01
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	98.01
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.01
PTZ00117	319	malate dehydrogenase; Provisional	98.0
PRK11579	346	putative oxidoreductase; Provisional	98.0
PRK06199	379	ornithine cyclodeaminase; Validated	98.0
PLN02306	386	hydroxypyruvate reductase	97.98
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.97
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.97
PRK07589	346	ornithine cyclodeaminase; Validated	97.97
PRK08300	302	acetaldehyde dehydrogenase; Validated	97.97
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.93
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.93
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.93
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.91
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.9
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.89
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.88
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	97.87
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.87
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.86
PRK10669	558	putative cation:proton antiport protein; Provision	97.85
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.85
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	97.85
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.83
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.83
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.82
CHL00194	317	ycf39 Ycf39; Provisional	97.81
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.81
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.81
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.8
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.77
PRK10206	344	putative oxidoreductase; Provisional	97.76
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	97.76
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.76
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.75
PRK15076	431	alpha-galactosidase; Provisional	97.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.73
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.72
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	97.71
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.71
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.71
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.71
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	97.71
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.71
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.7
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	97.69
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.68
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.67
PRK03562	621	glutathione-regulated potassium-efflux system prot	97.65
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.63
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.63
PLN02602	350	lactate dehydrogenase	97.63
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.63
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.6
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.57
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.57
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	97.55
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.54
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.53
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	97.49
PRK05086	312	malate dehydrogenase; Provisional	97.49
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.49
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.43
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.42
PRK06349	426	homoserine dehydrogenase; Provisional	97.41
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.41
PRK14982	340	acyl-ACP reductase; Provisional	97.39
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	97.39
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.38
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	97.35
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.35
PF10728	132	DUF2520: Domain of unknown function (DUF2520); Int	97.34
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	97.34
PF00393	291	6PGD: 6-phosphogluconate dehydrogenase, C-terminal	97.33
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	97.33
PRK09496	453	trkA potassium transporter peripheral membrane com	97.32
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	97.32
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.32
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.27
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.26
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.25
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	97.25
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.25
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.25
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.24
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	97.21
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.21
PF08546	125	ApbA_C: Ketopantoate reductase PanE/ApbA C termina	97.21
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.2
PLN02383	344	aspartate semialdehyde dehydrogenase	97.17
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.15
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.13
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	97.13
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.11
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	97.11
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.11
PRK06153	393	hypothetical protein; Provisional	97.11
PRK08328	231	hypothetical protein; Provisional	97.1
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.09
PRK05442	326	malate dehydrogenase; Provisional	97.08
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.07
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.07
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.07
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	97.04
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.04
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	97.04
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.03
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.03
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.02
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	97.02
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.01
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.0
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.0
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.0
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.99
PLN00106	323	malate dehydrogenase	96.99
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.99
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.97
COG2344	211	AT-rich DNA-binding protein [General function pred	96.97
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	96.97
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	96.96
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	96.96
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.96
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.92
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	96.92
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.92
TIGR01081	448	mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl	96.91
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	96.91
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.9
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.89
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	96.87
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.87
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	96.86
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.86
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	96.86
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.86
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.84
PTZ00325	321	malate dehydrogenase; Provisional	96.83
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.82
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.82
PRK06270	341	homoserine dehydrogenase; Provisional	96.82
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	96.82
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.81
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.81
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	96.8
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.78
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	96.76
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.74
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	96.72
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.71
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.71
PRK08223	287	hypothetical protein; Validated	96.7
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	96.67
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.66
PLN02477	410	glutamate dehydrogenase	96.65
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	96.65
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	96.65
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.64
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.62
PRK12814	652	putative NADPH-dependent glutamate synthase small	96.62
PF07479	149	NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate	96.6
PLN02427	386	UDP-apiose/xylose synthase	96.59
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.57
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	96.57
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.56
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.55
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	96.55
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	96.53
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.51
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	96.5
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	96.49
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	96.48
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.48
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.47
PRK06753	373	hypothetical protein; Provisional	96.47
PRK09414	445	glutamate dehydrogenase; Provisional	96.45
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.44
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	96.44
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.42
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.41
PRK06182	273	short chain dehydrogenase; Validated	96.39
PLN03209	576	translocon at the inner envelope of chloroplast su	96.39
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.37
PRK07411	390	hypothetical protein; Validated	96.36
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.35
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.35
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	96.34
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	96.31
PRK08017	256	oxidoreductase; Provisional	96.31
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.3
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.3
PRK05993	277	short chain dehydrogenase; Provisional	96.3
PRK08374	336	homoserine dehydrogenase; Provisional	96.29
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.27
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.26
PRK06392	326	homoserine dehydrogenase; Provisional	96.26
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.23
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	96.21
PRK05884	223	short chain dehydrogenase; Provisional	96.2
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.19
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	96.16
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.15
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	96.14
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.14
PRK07538	413	hypothetical protein; Provisional	96.13
PRK10538	248	malonic semialdehyde reductase; Provisional	96.13
PLN02695	370	GDP-D-mannose-3',5'-epimerase	96.09
COG4569	310	MhpF Acetaldehyde dehydrogenase (acetylating) [Sec	96.07
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	96.06
PRK05693	274	short chain dehydrogenase; Provisional	96.06
PLN02896	353	cinnamyl-alcohol dehydrogenase	96.04
COG0773	459	MurC UDP-N-acetylmuramate-alanine ligase [Cell env	96.04
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.03
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	96.02
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.02
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.01
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.0
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.98
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.97
PRK08163	396	salicylate hydroxylase; Provisional	95.97
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.96
PRK07588	391	hypothetical protein; Provisional	95.96
COG0300	265	DltE Short-chain dehydrogenases of various substra	95.96
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	95.95
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	95.94
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.93
TIGR03855	229	NAD_NadX aspartate dehydrogenase. Members of this	95.92
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.88
PRK12320	699	hypothetical protein; Provisional	95.85
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.84
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	95.84
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	95.83
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	95.83
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.82
PRK08309	177	short chain dehydrogenase; Provisional	95.8
PRK07236	386	hypothetical protein; Provisional	95.78
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	95.75
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	95.74
PRK08306	296	dipicolinate synthase subunit A; Reviewed	95.74
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	95.73
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.73
PRK05868	372	hypothetical protein; Validated	95.71
PRK05866	293	short chain dehydrogenase; Provisional	95.7
PLN02214	342	cinnamoyl-CoA reductase	95.67
TIGR03693	637	ocin_ThiF_like putative thiazole-containing bacter	95.67
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	95.62
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	95.62
cd01490	435	Ube1_repeat2 Ubiquitin activating enzyme (E1), rep	95.6
PLN02650	351	dihydroflavonol-4-reductase	95.59
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.59
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	95.58
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	95.58
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	95.57
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.56
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	95.55
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	95.54
PRK07326	237	short chain dehydrogenase; Provisional	95.53
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.52
PLN00016	378	RNA-binding protein; Provisional	95.51
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	95.51
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.5
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	95.5
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	95.49
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	95.49
PRK06101	240	short chain dehydrogenase; Provisional	95.47
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.47
PRK05875	276	short chain dehydrogenase; Provisional	95.45
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.43
PRK06847	375	hypothetical protein; Provisional	95.42
PLN02686	367	cinnamoyl-CoA reductase	95.42
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.41
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.4
PRK14851	679	hypothetical protein; Provisional	95.39
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.38
TIGR01019	286	sucCoAalpha succinyl-CoA synthetase, alpha subunit	95.36
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	95.36
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	95.36
PRK07877	722	hypothetical protein; Provisional	95.35
PRK07060	245	short chain dehydrogenase; Provisional	95.34
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.34
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	95.33
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.31
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	95.31
PRK05678	291	succinyl-CoA synthetase subunit alpha; Validated	95.3
PRK07102	243	short chain dehydrogenase; Provisional	95.29
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	95.28
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.24
TIGR02130	275	dapB_plant dihydrodipicolinate reductase. This nar	95.24
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	95.24
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.21
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	95.21
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.2
PRK14852	989	hypothetical protein; Provisional	95.2
KOG1495	332	consensus Lactate dehydrogenase [Energy production	95.19
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK06475	400	salicylate hydroxylase; Provisional	95.17
PRK08013	400	oxidoreductase; Provisional	95.15
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.15
PRK09291	257	short chain dehydrogenase; Provisional	95.13
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	95.12
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	95.11
PRK06953	222	short chain dehydrogenase; Provisional	95.09

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=5.2e-54  Score=354.19  Aligned_cols=251  Identities=39%  Similarity=0.665  Sum_probs=244.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|+..+.++.|+++.+|+||+|||++.+++.       
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            79999999999999999999999999999999999 6767777999999999999999999999999999887       


Q ss_pred             ---------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 ---------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                                 .++.+|..|+|+||+|++..+..|++.+++||+++.+++++|+|+.++.++++
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~  160 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH  160 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence                                       67778999999999999999999999999999999999999999999999999


Q ss_pred             eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH
Q 025163          126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD  205 (257)
Q Consensus       126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  205 (257)
                      +|+.|.++.+|+++|.+...++.++.|++.++++.|+|++.+.++++.+...||.++++.+++++++|+|+|.++++.||
T Consensus       161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD  240 (286)
T COG2084         161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD  240 (286)
T ss_pred             ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      ++++.+.+++.++++|+...+.++|+.+.+.|++++||+++++.|+
T Consensus       241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~  286 (286)
T COG2084         241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE  286 (286)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence            9999999999999999999999999999999999999999999874

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=100.00  E-value=8.4e-52  Score=334.81  Aligned_cols=255  Identities=42%  Similarity=0.751  Sum_probs=247.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      ++|||||+|.||..|+.+|.++||.|++|||+.++.++|++.|..++.+|.|+++++|+||.|||++..++.        
T Consensus        36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv  115 (327)
T KOG0409|consen   36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV  115 (327)
T ss_pred             ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence            479999999999999999999999999999999999999999999999999999999999999999988887        


Q ss_pred             ---------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 ---------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                                 .++.++..|+|+||+|+...+++|++.+++|||++.+++..++|+.+|++++|
T Consensus       116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~  195 (327)
T KOG0409|consen  116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF  195 (327)
T ss_pred             eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence                                       56668999999999999999999999999999999999999999999999999


Q ss_pred             eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH
Q 025163          126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD  205 (257)
Q Consensus       126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd  205 (257)
                      +|..|.++.+|+++|.+.+..+..++|++.++++.|+|+.++.++++.+.+.|+.+.++.|.+..++|.|+|.+++|.||
T Consensus       196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD  275 (327)
T KOG0409|consen  196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD  275 (327)
T ss_pred             ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      ++++.+.+++.+.|+|+...+.|+|+...+.|+++.|++++++.++....
T Consensus       276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~  325 (327)
T KOG0409|consen  276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNG  325 (327)
T ss_pred             HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999887654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=6.2e-48  Score=325.42  Aligned_cols=254  Identities=29%  Similarity=0.499  Sum_probs=240.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++..++.        
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~   79 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC   79 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence            8999999999999999999999999999999875 5778888988888999999999999999999866554        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+..+|+.|+|+|+++++..++.+++.++++|+++.+++++++|+.++.+++|+
T Consensus        80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~  159 (292)
T PRK15059         80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV  159 (292)
T ss_pred             hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence                                      556779999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      |+.|+++.+|+++|++....+.++.|++.++++.|+|++.+.+++..+.+.|++++++.+++.+++|.++|+++.+.||+
T Consensus       160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl  239 (292)
T PRK15059        160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL  239 (292)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      +++.+++++.|+++|+.+.+.++|+.+.+.|++++|++++++++++..+
T Consensus       240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~~  288 (292)
T PRK15059        240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMAN  288 (292)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999987654

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-46  Score=318.60  Aligned_cols=254  Identities=30%  Similarity=0.479  Sum_probs=238.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      +||+|||+|.||.+|+.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++...+.        
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            389999999999999999999999999999999999999999998889999999999999999999875443        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++++
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~  161 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA  161 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence                                      566789999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-cccCCCCCCCcccchHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD  205 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  205 (257)
                      |+.|.++.+|+++|++...+..++.|++.++++.|+|++.+.++++.+...++.+..+.+ ++..++|.++|+++.+.||
T Consensus       162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD  241 (296)
T PRK15461        162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD  241 (296)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence            999999999999999999999999999999999999999999999987767777766654 8899999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ++++.+++++.|+++|+.+.+.++|+.+.+.|+|++||+++++++++..
T Consensus       242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  290 (296)
T PRK15461        242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVSA  290 (296)
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999997643

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=100.00  E-value=2.7e-44  Score=303.77  Aligned_cols=247  Identities=29%  Similarity=0.458  Sum_probs=230.1

Q ss_pred             EEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH------------
Q 025163            5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------------   72 (257)
Q Consensus         5 iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------------   72 (257)
                      |||+|.||.+|+++|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|||++...+.            
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            68999999999999999999999999999999999999998888999999999999999998665432            


Q ss_pred             ----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCC
Q 025163           73 ----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVG  130 (257)
Q Consensus        73 ----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g  130 (257)
                                            .+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++++|+.|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g  160 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG  160 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence                                  5556799999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-------cccCCCCCCCcccchHH
Q 025163          131 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ  203 (257)
Q Consensus       131 ~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~  203 (257)
                      .++.+|+++|.+.+..+.++.|++.++++.|+|++.+.++++.+.+.++.+..+.+       .+..++|.++|++..+.
T Consensus       161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  240 (288)
T TIGR01692       161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML  240 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence            99999999999999999999999999999999999999999998888887765543       24668999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      ||++++.+++++.|+++|+.+.+.++|+.+.+.|+|++|+++++++++
T Consensus       241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~  288 (288)
T TIGR01692       241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR  288 (288)
T ss_pred             hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence            999999999999999999999999999999999999999999998763

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=100.00  E-value=1.3e-43  Score=300.33  Aligned_cols=253  Identities=31%  Similarity=0.533  Sum_probs=238.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---------   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---------   72 (257)
                      ||+|||+|.||..++.+|+++||+|++|||++++.+++.+.|.....++.++++++|+||+|+|+....+.         
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            69999999999999999999999999999999999999999988888999999999999999998755432         


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeC
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                                               .+..+|++|+++|+++++..+..+++.++++|+++.+++++++|+.++.+++++|
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g  160 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG  160 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence                                     4556789999999999999899999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHH
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      +.|.++.+|+++|.+....+.+++|++.++++.|+|++++.++++.+.+.++++..+.+++.+++|.++|+++++.||+.
T Consensus       161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~  240 (291)
T TIGR01505       161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN  240 (291)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999988889999998889999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ++.+++++.|+++|+++.+.++|+.+.+.|+|++||+++++++++.+
T Consensus       241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~~  287 (291)
T TIGR01505       241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELLA  287 (291)
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999998654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=100.00  E-value=3.3e-43  Score=298.67  Aligned_cols=254  Identities=31%  Similarity=0.561  Sum_probs=238.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++.+|.+.|++|.+|||++++.+++.+.|+..++++.++++++|+||+|+|+....+.        
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999999999999988988888999999999999999997665432        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+..+|++|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++++
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~  162 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  162 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence                                      344568999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      |+.|.++.+|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.|+.++.+.+++.+++|.++|+++.+.||+
T Consensus       163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl  242 (296)
T PRK11559        163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  242 (296)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888899999888999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      +++++++++.|+++|+++.+.+.++.+.+.|+|+.||+++++++++..
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  290 (296)
T PRK11559        243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKLA  290 (296)
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999997654

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=3e-43  Score=344.02  Aligned_cols=254  Identities=23%  Similarity=0.388  Sum_probs=243.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      .||||||+|.||..||.+|.++||+|++|||++++.+++.+.|+..++|+.|+++++|+||+|+|++..++.        
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~   84 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA   84 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence            489999999999999999999999999999999999999999999999999999999999999999988775        


Q ss_pred             --------------------------HHHhcC--CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163           73 --------------------------AITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        73 --------------------------~~~~~g--~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  124 (257)
                                                .+..+|  +.|+|+|++|++..+..|++.+++||+++.+++++++|+.++.+++
T Consensus        85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~  164 (1378)
T PLN02858         85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY  164 (1378)
T ss_pred             HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence                                      556678  8899999999999999999999999999999999999999999988


Q ss_pred             Ee-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHH
Q 025163          125 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ  203 (257)
Q Consensus       125 ~~-g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  203 (257)
                      ++ |+.|+++.+|+++|++.+.++.++.|++.++++.|+|++.++++++.+++.||++.++.++++.++|.++|+++.+.
T Consensus       165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~  244 (1378)
T PLN02858        165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV  244 (1378)
T ss_pred             EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence            65 88999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ||++++++++++.|+++|+.+.+.+.|+.+.+.|+|+.||+++++.+++..
T Consensus       245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~~  295 (1378)
T PLN02858        245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKVF  295 (1378)
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999997643

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=2.7e-41  Score=330.38  Aligned_cols=254  Identities=27%  Similarity=0.480  Sum_probs=240.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      ++|||||+|+||.+||.+|+++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|||++...+.        
T Consensus       325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~  404 (1378)
T PLN02858        325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA  404 (1378)
T ss_pred             CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence            479999999999999999999999999999999999999999988889999999999999999998776544        


Q ss_pred             --------------------------HHHh--cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163           73 --------------------------AITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        73 --------------------------~~~~--~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  124 (257)
                                                .+..  +|+.|+|+|+++++..+..|++.+++||+++.+++++++|+.++.+++
T Consensus       405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~  484 (1378)
T PLN02858        405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY  484 (1378)
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence                                      4555  799999999999999999999999999999999999999999999988


Q ss_pred             Ee-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHH
Q 025163          125 FL-GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ  203 (257)
Q Consensus       125 ~~-g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  203 (257)
                      ++ |++|+++.+|+++|++...++.+++|++.++++.|+|++.+.++++.+++.||++.++.++++.++|.++|+++.+.
T Consensus       485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~  564 (1378)
T PLN02858        485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV  564 (1378)
T ss_pred             EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence            85 56999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ||++++++.+++.|+|+|+.+.+.++|+.+.+.|+|+.|++++++++++.+
T Consensus       565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~~  615 (1378)
T PLN02858        565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETLT  615 (1378)
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999997643

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=1.4e-39  Score=276.24  Aligned_cols=250  Identities=23%  Similarity=0.292  Sum_probs=225.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc---CceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||..++.+|.++|++|++|||++++.+.+.+.|.....++++++++   +|+||+|+|++...+.     
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~~i   80 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIKDL   80 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHHHH
Confidence            89999999999999999999999999999999999999998899888999998876   6999999999855443     


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---Ce
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KA  123 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~  123 (257)
                                                .+..+|+.|+|+|+++++..+..|+ .+++||+++.+++++++|+.++.   ++
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~  159 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGY  159 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcE
Confidence                                      5556799999999999999999998 79999999999999999999997   78


Q ss_pred             EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhc-CCCchhhhccCCcccCCCCCCCcccc
Q 025163          124 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLG-GIANPMFKGKGPTMLQSNYAPAFPLK  200 (257)
Q Consensus       124 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g--~~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~  200 (257)
                      +|+|++|.+..+|+++|++.+.++.++.|++.++++.|  +|++.+.++++.+ ...|++++.+.+.+..+++  .+.++
T Consensus       160 ~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~~l~  237 (299)
T PRK12490        160 VHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LAGIK  237 (299)
T ss_pred             EEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hhhhh
Confidence            99999999999999999999999999999999999999  9999999999964 4788888887777765433  35688


Q ss_pred             hHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163          201 HQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVKDL  253 (257)
Q Consensus       201 ~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~~~~~g~~~~d~~~l~~~~~~~  253 (257)
                      .+.||+   +++++.+++.|+|+|++..+. .++....+++.|..|.+++.+++-..
T Consensus       238 ~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~~  294 (299)
T PRK12490        238 GYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGGH  294 (299)
T ss_pred             HHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCCC
Confidence            999998   899999999999999999995 88888888888899999999988543

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=6.7e-39  Score=284.50  Aligned_cols=232  Identities=22%  Similarity=0.339  Sum_probs=210.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhhc---CceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~---~~~~~~~~~~~---~dvii~~v~~~~~~   70 (257)
                      ++|||||+|.||..||.+|+++||+|++|||++++.+.+.+.    |..   .+.|++|+++.   +|+||+|||++..+
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV   86 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV   86 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence            479999999999999999999999999999999999998764    543   67899999876   99999999999887


Q ss_pred             HH-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHh
Q 025163           71 LS-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI  119 (257)
Q Consensus        71 ~~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~  119 (257)
                      +.                               .+..+|++|+++||+|++..++.|+ .+++||+++++++++|+|+.+
T Consensus        87 ~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~i  165 (493)
T PLN02350         87 DQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKV  165 (493)
T ss_pred             HHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHH
Confidence            65                               6667899999999999999999999 899999999999999999999


Q ss_pred             cCC------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HhhcCCCchhhhccCCccc
Q 025163          120 GKK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDV---LDLGGIANPMFKGKGPTML  189 (257)
Q Consensus       120 ~~~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~---~~~~~~~s~~~~~~~~~~~  189 (257)
                      +.+      ++|+|+.|+++.+|+++|.+.+..+.+++|++.++++ .|++++.+.++   ++.+...|++++.+.+.+.
T Consensus       166 a~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~  245 (493)
T PLN02350        166 AAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFS  245 (493)
T ss_pred             hhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHh
Confidence            954      8999999999999999999999999999999999999 59999999988   5677888999988888777


Q ss_pred             CCC-CCCCcccchHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHH
Q 025163          190 QSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKA  233 (257)
Q Consensus       190 ~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~~  233 (257)
                      .++ +.++|.++.+.||++      +..+.+.+.|+|+|+ ..++...+...
T Consensus       246 ~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~  297 (493)
T PLN02350        246 VKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSG  297 (493)
T ss_pred             hcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhc
Confidence            664 877899999999999      899999999999999 67766666554

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=100.00  E-value=2.3e-37  Score=263.00  Aligned_cols=250  Identities=25%  Similarity=0.345  Sum_probs=218.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc---CceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||.+++++|.++|++|++|||++++.+++.+.|+..+.+++|+++.   +|+||+|+|++...+.     
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~~l   80 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDEL   80 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999998875   6999999998744333     


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC----C
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK----K  122 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~----~  122 (257)
                                                .+..+|+.|+|+|++|++..++.+. .+++||+++.+++++++|+.++.    +
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~  159 (301)
T PRK09599         81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDG  159 (301)
T ss_pred             HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCC
Confidence                                      5567799999999999999999996 79999999999999999999998    8


Q ss_pred             eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcc-
Q 025163          123 AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK--SGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFP-  198 (257)
Q Consensus       123 ~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~--~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~-  198 (257)
                      ++|+|++|+++.+|+++|.+.+..+.++.|++.++++  +|+|++.+.++++.+. ..|++++.+.+.+.. +  +.+. 
T Consensus       160 ~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~--~~~~~  236 (301)
T PRK09599        160 YLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-D--PKLDE  236 (301)
T ss_pred             eEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C--CCHHH
Confidence            9999999999999999999999999999999999999  9999999999999775 588888877666633 3  2232 


Q ss_pred             cchHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          199 LKHQQKD---MRLALALGDENAVSMPIAAAANE-AFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       199 ~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      +..+.||   ++.+++.+.+.|+|+|.+.++.. .+....+.|.+..|.+++.+++-...
T Consensus       237 ~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h~  296 (301)
T PRK09599        237 ISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGHA  296 (301)
T ss_pred             HHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCC
Confidence            3345565   48899999999999999999544 47777788999999999999986543

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=100.00  E-value=2.4e-33  Score=237.82  Aligned_cols=249  Identities=19%  Similarity=0.252  Sum_probs=205.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh---hcCceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI---KKCTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||..|+.+|.++||+|.+|||++++++.+.+.|.....++.++.   +.+|+||+|||+......     
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~~~l~   80 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVLEELA   80 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHHHHHH
Confidence            899999999999999999999999999999999999999998887777887765   468999999999833222     


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---CeE
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KAF  124 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~~  124 (257)
                                               .+..+|++|+++|+++++..++.+ +.++++|+++.+++++++|+.++.   .++
T Consensus        81 ~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~  159 (298)
T TIGR00872        81 PTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYL  159 (298)
T ss_pred             hhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEE
Confidence                                     455679999999999999999999 589999999999999999999986   589


Q ss_pred             EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcccc-
Q 025163          125 FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS--GLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLK-  200 (257)
Q Consensus       125 ~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~--g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~-  200 (257)
                      |+|+.|+++.+|+++|.+.+..+.++.|++.++++.  |+|++++.++++.+. ..|++++...+.+...++.+.|... 
T Consensus       160 ~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~  239 (298)
T TIGR00872       160 YCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRV  239 (298)
T ss_pred             EECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHH
Confidence            999999999999999999999999999999999998  579999999999876 5888888765555554443444332 


Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163          201 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  253 (257)
Q Consensus       201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~  253 (257)
                      ...+|.+.++..+.+.|+|+|.+.+.  ++.+..... .+.--..++...|+.
T Consensus       240 ~~~~~~r~~v~~a~~~g~p~P~~~~a--l~~~~~~~~-~~~~~~~~~~~~r~~  289 (298)
T TIGR00872       240 SDSGEGRWTVIAAIDLGVPAPVIATS--LQSRFASRD-LDDFANKVLAALRKE  289 (298)
T ss_pred             HhhccHHHHHHHHHHhCCCHHHHHHH--HHHHHHhCC-CCCcHHHHHHHHHHh
Confidence            35667799999999999999999984  444443332 222234566666653

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-33  Score=245.06  Aligned_cols=225  Identities=24%  Similarity=0.345  Sum_probs=188.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhh---cCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~---~~dvii~~v~~~~~~~   71 (257)
                      ++|||||+|.||.+||.+|+++||+|++|||++++.+++.+.    |  +..+.+++|+++   ++|+||+|||++..++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            479999999999999999999999999999999999998764    5  346789999986   4899999999887766


Q ss_pred             H-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhc
Q 025163           72 S-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG  120 (257)
Q Consensus        72 ~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~  120 (257)
                      .                               .+..+|++|+++|++|++..++.|+ ++|+||+++++++++|+|+.++
T Consensus        82 ~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia  160 (470)
T PTZ00142         82 ETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCS  160 (470)
T ss_pred             HHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHh
Confidence            5                               6667899999999999999999999 7999999999999999999999


Q ss_pred             CC------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHh---hcCCCchhhhccCCcccC
Q 025163          121 KK------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQ  190 (257)
Q Consensus       121 ~~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~  190 (257)
                      .+      ++|+|+.|+++.+|+++|.+.+.++++++|++.+++ +.|++++++.+++.   .+...|++++....-+..
T Consensus       161 ~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~~  240 (470)
T PTZ00142        161 AKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILAK  240 (470)
T ss_pred             hhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhhc
Confidence            88      799999999999999999999999999999999998 79999999988874   667788888765444444


Q ss_pred             CCCCC-CcccchH-----HH-HHHHHHHHHhhcCCCchHHHHH
Q 025163          191 SNYAP-AFPLKHQ-----QK-DMRLALALGDENAVSMPIAAAA  226 (257)
Q Consensus       191 ~~~~~-~~~~~~~-----~k-d~~~~~~~a~~~g~~~p~~~~~  226 (257)
                      +|-.. +.-++..     .| .-+...+.+-+.|+|.|++..+
T Consensus       241 ~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a  283 (470)
T PTZ00142        241 KDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAAS  283 (470)
T ss_pred             ccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHH
Confidence            43221 1111111     11 1266788888999999987663

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=100.00  E-value=8.7e-32  Score=239.01  Aligned_cols=223  Identities=21%  Similarity=0.311  Sum_probs=187.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---cCceEEEccCChHHHHH-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALS-   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~-   72 (257)
                      +|||||+|.||.+||.+|+++||+|++|||++++.+++.+.     ++..+.+++++++   ++|+||+|||++..++. 
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            58999999999999999999999999999999999999876     2556778888774   68999999999766555 


Q ss_pred             ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                                                    .+..+|++|+++|++|++..++.|+ .+|+||+++.+++++|+|+.++.+
T Consensus        81 i~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~  159 (467)
T TIGR00873        81 INQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAK  159 (467)
T ss_pred             HHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhh
Confidence                                          5566899999999999999999998 799999999999999999999987


Q ss_pred             ------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccCCcccCCC
Q 025163          123 ------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSN  192 (257)
Q Consensus       123 ------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~  192 (257)
                            ++|+|+.|+++.+|+++|.+.+.+++++.|++.+++ +.|++++.+.+++   +.+...|++++...+.+..+|
T Consensus       160 ~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~~~d  239 (467)
T TIGR00873       160 VDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILKKKD  239 (467)
T ss_pred             cCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHhccC
Confidence                  479999999999999999999999999999999986 7999999999888   567788888887766666555


Q ss_pred             CCCCcccchH------HHHHHHHHHHHhhcCCCchHHHH
Q 025163          193 YAPAFPLKHQ------QKDMRLALALGDENAVSMPIAAA  225 (257)
Q Consensus       193 ~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~~  225 (257)
                      -....-++..      .-.-+...+.+-+.|+|.|.+..
T Consensus       240 ~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~  278 (467)
T TIGR00873       240 EDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITE  278 (467)
T ss_pred             CCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHH
Confidence            3311111111      11226678888899999998765

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=99.98  E-value=1.2e-30  Score=230.82  Aligned_cols=222  Identities=17%  Similarity=0.156  Sum_probs=187.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+||..+|..|+++||+|++||+++++++.+++                   .| ++.++++.++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            89999999999999999999999999999999999988764                   23 45667888889999999


Q ss_pred             EEccCChHH---------HHH-------------------------------HHHhc--CCc-EEeccccCCccccccCc
Q 025163           61 IGMLADPAA---------ALS-------------------------------AITSK--GGH-FLEAPVSGSKQPAETGQ   97 (257)
Q Consensus        61 i~~v~~~~~---------~~~-------------------------------~~~~~--g~~-~~~~pv~~~~~~~~~~~   97 (257)
                      |+|||++..         +..                               .+..+  |.. +.+.|+.++|..+..|.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~  160 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGN  160 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCC
Confidence            999998742         221                               11122  332 45667777777777777


Q ss_pred             E--------EEEecCChhhHHHHHHHHHHhc-CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 025163           98 L--------VILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLL  168 (257)
Q Consensus        98 ~--------~~~~~g~~~~~~~~~~~l~~~~-~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~  168 (257)
                      .        .+++|++++..++++++|+.++ ..++++++++.++..|++.|++.+..+++++|+..+|++.|+|++++.
T Consensus       161 ~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~  240 (411)
T TIGR03026       161 AVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVI  240 (411)
T ss_pred             hhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            5        6888899999999999999998 578999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCchhhhccCCcccCCCCCCC--cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          169 DVLDLGGIANPMFKGKGPTMLQSNYAPA--FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       169 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ++++.+           +++...++.|+  +...++.||+.++.+.+++.|+++|+++++.++-+..
T Consensus       241 ~~~~~~-----------~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~  296 (411)
T TIGR03026       241 EAAGTD-----------PRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ  296 (411)
T ss_pred             HHhCCC-----------CCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence            998864           34445566775  4678899999999999999999999999988877654

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.97  E-value=2.1e-30  Score=229.33  Aligned_cols=214  Identities=25%  Similarity=0.337  Sum_probs=187.3

Q ss_pred             hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhc---CceEEEccCChHHHHH----------
Q 025163           11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALS----------   72 (257)
Q Consensus        11 mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~----------   72 (257)
                      ||..||.+|+++||+|++|||++++.+++.+.     |+..+.|++|+++.   +|+||+|||++..++.          
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~~l~~~l~   80 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIEQLLPLLE   80 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHHHHHhcCC
Confidence            89999999999999999999999999999874     58889999999874   8999999999988776          


Q ss_pred             ---------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCe-------E
Q 025163           73 ---------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA-------F  124 (257)
Q Consensus        73 ---------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~-------~  124 (257)
                                           .+..+|++|+++||+|++..++.|. .+|+||+++.+++++|+|+.++.++       .
T Consensus        81 ~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~  159 (459)
T PRK09287         81 KGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEPCVT  159 (459)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCCcee
Confidence                                 6667899999999999999999998 8999999999999999999999886       8


Q ss_pred             EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---hhcCCCchhhhccCCcccCCCCCCCcccc
Q 025163          125 FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE-KSGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQSNYAPAFPLK  200 (257)
Q Consensus       125 ~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~-~~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  200 (257)
                      |+|+.|+++.+|+++|.+.+.+++++.|++.+++ +.|++++.+.+++   +.+...|++++...+.+..+|+..+..+-
T Consensus       160 ~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~l~~~d~~~~~~~~  239 (459)
T PRK09287        160 YIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADILRQKDEETGKPLV  239 (459)
T ss_pred             eeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHHHhcCCCCCCCcch
Confidence            9999999999999999999999999999999999 5899999998888   46778899999888888888874333221


Q ss_pred             hHHHH-------HHHHHHHHhhcCCCchHHHH
Q 025163          201 HQQKD-------MRLALALGDENAVSMPIAAA  225 (257)
Q Consensus       201 ~~~kd-------~~~~~~~a~~~g~~~p~~~~  225 (257)
                      ....|       -+...+.+-+.|+|.|++..
T Consensus       240 d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~  271 (459)
T PRK09287        240 DVILDKAGQKGTGKWTSQSALDLGVPLTLITE  271 (459)
T ss_pred             HHhcCcccCCcHHHHHHHHHHHhCCChHHHHH
Confidence            11122       26778888899999998755

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.97  E-value=1.9e-30  Score=223.28  Aligned_cols=244  Identities=16%  Similarity=0.196  Sum_probs=200.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------C------CcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------g------~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||+++|.+|+++||+|++|+|++++.+.+++.        |      +..++++.++++++|+||+|+|+
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~   84 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS   84 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence            799999999999999999999999999999999988888764        3      34566888888999999999999


Q ss_pred             hHHHHH-----------------------------HHHh---cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHH
Q 025163           67 PAAALS-----------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAIS  114 (257)
Q Consensus        67 ~~~~~~-----------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~  114 (257)
                      ....+.                             .+..   .++.++.+|..........+++.++.+++++.++++++
T Consensus        85 ~~~~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~  164 (328)
T PRK14618         85 KALRETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQA  164 (328)
T ss_pred             HHHHHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHH
Confidence            865443                             1112   34455666655444444556778889999999999999


Q ss_pred             HHHHhcCCeEE--------eCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh----
Q 025163          115 ALNVIGKKAFF--------LGE---------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL----  173 (257)
Q Consensus       115 ~l~~~~~~~~~--------~g~---------~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~----  173 (257)
                      +|+..+.+++.        .+.         .|.+..+|+.+|.....+..++.|+..++++.|+++++++++++.    
T Consensus       165 ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~  244 (328)
T PRK14618        165 AFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLI  244 (328)
T ss_pred             HhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhhee
Confidence            99999988763        332         477788999999999999999999999999999999999999886    


Q ss_pred             cCCCchhhhccC--CcccCC---C-CCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHH
Q 025163          174 GGIANPMFKGKG--PTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF  247 (257)
Q Consensus       174 ~~~~s~~~~~~~--~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~  247 (257)
                      .++.|+.++++.  .++..+   + +.+.|.+.++.||++.+.+++++.++++|+++.+++++       +++.|..+++
T Consensus       245 ~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~~~~  317 (328)
T PRK14618        245 ATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPLAGL  317 (328)
T ss_pred             eEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHH
Confidence            367888888873  477776   4 66788899999999999999999999999999999888       3566777766


Q ss_pred             HHHH
Q 025163          248 EVVK  251 (257)
Q Consensus       248 ~~~~  251 (257)
                      +.+-
T Consensus       318 ~~~~  321 (328)
T PRK14618        318 RSLM  321 (328)
T ss_pred             HHHh
Confidence            6654

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.97  E-value=4.7e-29  Score=196.03  Aligned_cols=246  Identities=24%  Similarity=0.346  Sum_probs=194.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh---cCceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~-----   72 (257)
                      |+|++||+|.||..+..+|.+.||+|++||+|++.++++...|++.++|+.+.++   ...+|.++||..+....     
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~l   80 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDL   80 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999988764   57899999998855544     


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC---Ce
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK---KA  123 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~---~~  123 (257)
                                                .+..+|++|+|+..+++.-.++.|. ++|+|||.+++++++|+|+.+..   -.
T Consensus        81 a~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gy  159 (300)
T COG1023          81 APLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGY  159 (300)
T ss_pred             HhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCcc
Confidence                                      5778999999999999999999997 59999999999999999999986   46


Q ss_pred             EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCcccc
Q 025163          124 FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG--LDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAFPLK  200 (257)
Q Consensus       124 ~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g--~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~  200 (257)
                      .|+|+.|+++.+||++|-+.+.++++++|.+.+++.+.  +|.+.+.++++.++ ..||.++-. ...++.+..-. .+.
T Consensus       160 l~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt-~~Af~~d~~L~-q~~  237 (300)
T COG1023         160 LYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLT-AEAFKKDPDLD-QIS  237 (300)
T ss_pred             ccccCCCcchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHH-HHHHhhCCCHH-Hhc
Confidence            79999999999999999999999999999999999865  66788999999875 456665432 11111111000 000


Q ss_pred             hHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHH-HHHHHHhh
Q 025163          201 HQQKD---MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSA-VFEVVKDL  253 (257)
Q Consensus       201 ~~~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~-l~~~~~~~  253 (257)
                      ....|   -+.-++.+-+.|+|.|++..  .++.+..+++  +..|+. ++..+|.+
T Consensus       238 g~v~dSGEGrWTv~~aldlgvpaPVia~--al~~Rf~S~~--~d~f~~kvlaalR~~  290 (300)
T COG1023         238 GRVSDSGEGRWTVEEALDLGVPAPVIAL--ALMMRFRSRQ--DDTFAGKVLAALRNE  290 (300)
T ss_pred             CeeccCCCceeehHHHHhcCCCchHHHH--HHHHHHhccc--hhhHHHHHHHHHHHH
Confidence            00001   13457788889999999877  4566666643  344653 55556543

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.95  E-value=3.9e-27  Score=202.68  Aligned_cols=243  Identities=19%  Similarity=0.257  Sum_probs=183.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||..++..|+++||+|++|+|++++++.+++.              ++....+++++++++|+||+|||+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            699999999999999999999999999999999999988875              345567888888999999999998


Q ss_pred             hHHHHH-------------------------------HHHhc-----CCcEEeccccCCccccccCcEEEEecCChhhHH
Q 025163           67 PAAALS-------------------------------AITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEKALYD  110 (257)
Q Consensus        67 ~~~~~~-------------------------------~~~~~-----g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~  110 (257)
                      ......                               .+...     ...++.+|............+.++.+++.+.++
T Consensus        82 ~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~  161 (325)
T PRK00094         82 QALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAE  161 (325)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHH
Confidence            644332                               11111     222344444433323444455667778899999


Q ss_pred             HHHHHHHHhcCCeEEeCCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163          111 EAISALNVIGKKAFFLGEV-----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL  173 (257)
Q Consensus       111 ~~~~~l~~~~~~~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~  173 (257)
                      +++++|+..+.++.+..++                 |.+..+|+.+|.+...+..++.|++.++++.|+|++.+.++...
T Consensus       162 ~~~~~l~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~  241 (325)
T PRK00094        162 RVQELFHSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGL  241 (325)
T ss_pred             HHHHHhCCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHh
Confidence            9999999988877666553                 45555788899999999999999999999999999999887665


Q ss_pred             c----CCCchhhhccC--CcccCCC-C-----CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q 025163          174 G----GIANPMFKGKG--PTMLQSN-Y-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN  241 (257)
Q Consensus       174 ~----~~~s~~~~~~~--~~~~~~~-~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~  241 (257)
                      +    +..++..+++.  ..+..+. +     ..+ ...++.||++.+++.++++|+++|+.+++++++       .++.
T Consensus       242 ~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~  313 (325)
T PRK00094        242 GDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGK  313 (325)
T ss_pred             hhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCC
Confidence            4    34455555543  2333222 1     112 567789999999999999999999999999987       4667


Q ss_pred             cHHHHHHHHH
Q 025163          242 DFSAVFEVVK  251 (257)
Q Consensus       242 d~~~l~~~~~  251 (257)
                      +...+++.+-
T Consensus       314 ~~~~~~~~~~  323 (325)
T PRK00094        314 DPREAVEDLM  323 (325)
T ss_pred             CHHHHHHHHh
Confidence            7777776653

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.95  E-value=4e-26  Score=194.66  Aligned_cols=236  Identities=15%  Similarity=0.146  Sum_probs=191.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCCC-------------cccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHGA-------------TVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g~-------------~~~~~~~~~~~~   56 (257)
                      |||+|||+|.||..+|..|+++|++|++|||++++++..           .+.|.             ..+.++++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            689999999999999999999999999999998877653           33442             567789899999


Q ss_pred             CceEEEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEec---
Q 025163           57 CTITIGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSA---  103 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~---  103 (257)
                      +|+|+.|+|+......                              .+...+..+.++|+.++...    .++.+++   
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~  158 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPW  158 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCC
Confidence            9999999998754443                              11223456777887643211    2456775   


Q ss_pred             CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhc
Q 025163          104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG  183 (257)
Q Consensus       104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~  183 (257)
                      ++++.+++++++++.+|+++++++..+.+.   +++|.    ...+++|++.++++.|++++++.++++.+.+.+|.+  
T Consensus       159 t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--  229 (308)
T PRK06129        159 TAPATLARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--  229 (308)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--
Confidence            789999999999999999999998767775   33442    458999999999999999999999999988888777  


Q ss_pred             cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q 025163          184 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV  249 (257)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~  249 (257)
                      +++.++..++.+++....+.||..+..+++++.+.|.|+++..++.+....+.-.+..++..+.++
T Consensus       230 ~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (308)
T PRK06129        230 MGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW  295 (308)
T ss_pred             cCHHHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            567777777778888899999999999999999999999998888777787776777777766554

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.95  E-value=9e-28  Score=186.41  Aligned_cols=128  Identities=35%  Similarity=0.677  Sum_probs=116.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||||||+|.||..||++|.++||+|++|||++++.+++.+.|++.+.|+.|+++++|+||+|||++..++.        
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            689999999999999999999999999999999999999999999999999999999999999999887765        


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE-Ee
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF-FL  126 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~-~~  126 (257)
                                               .+..+|+.|+|+|+++++..+..+++.+++||+++.+++++++|+.++.+++ ++
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~  161 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYV  161 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeee
Confidence                                     5667899999999999999999999999999999999999999999999998 45


Q ss_pred             CC
Q 025163          127 GE  128 (257)
Q Consensus       127 g~  128 (257)
                      |+
T Consensus       162 G~  163 (163)
T PF03446_consen  162 GP  163 (163)
T ss_dssp             ES
T ss_pred             Cc
Confidence            64

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=99.95  E-value=7.7e-26  Score=199.58  Aligned_cols=218  Identities=14%  Similarity=0.144  Sum_probs=168.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc----------------ccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~----------------~~~~~~~~~~~~dvii~~v   64 (257)
                      |||+|||+|+||..+|.+|++ ||+|++||+++++++.++ .|..                .+++..++++++|++|+||
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V   84 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV   84 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence            899999999999999999887 699999999999999998 4432                3445456788999999999


Q ss_pred             CChH---------HHHH--------------------------------HHHh-cCCcEEe--------ccccCCccccc
Q 025163           65 ADPA---------AALS--------------------------------AITS-KGGHFLE--------APVSGSKQPAE   94 (257)
Q Consensus        65 ~~~~---------~~~~--------------------------------~~~~-~g~~~~~--------~pv~~~~~~~~   94 (257)
                      |++.         .+..                                .+.. .|..+.+        .|+..+.....
T Consensus        85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence            9882         2221                                1111 2444433        23333333333


Q ss_pred             cCcEE-EEecCChhhHHHHHHHHHHhc-CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163           95 TGQLV-ILSAGEKALYDEAISALNVIG-KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus        95 ~~~~~-~~~~g~~~~~~~~~~~l~~~~-~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      ...+. ++.|++++..+.++++++.+. ..++++++++.|+..|+++|++.++.+++++|++.+|++.|+|.+++.++++
T Consensus       165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~  244 (425)
T PRK15182        165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG  244 (425)
T ss_pred             ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence            23332 556667888889999999986 4578899999999999999999999999999999999999999999999966


Q ss_pred             hcCCCchhhhccCCcccCCCCCCC-cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          173 LGGIANPMFKGKGPTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       173 ~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ..    +.+         ..+.|| +...|..||...+...+++.|.+++++++++++-+..
T Consensus       245 ~~----~~~---------~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~~  293 (425)
T PRK15182        245 SK----WNF---------LPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDNM  293 (425)
T ss_pred             CC----CCc---------ccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            54    211         113455 7888899999999999999999999999988776543

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=99.94  E-value=5.5e-25  Score=192.03  Aligned_cols=221  Identities=15%  Similarity=0.122  Sum_probs=167.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH----------------CCCcc--cCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~----------------~g~~~--~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|.||..+|..|+. ||+|++||+++++++++++                .+.+.  ..++.++++++|+||+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            899999999999999987774 9999999999999998876                23333  3347788899999999


Q ss_pred             ccCCh----------HHHHH----HHH-hcCCcEEe------------------ccccCCccccccCcE--------EEE
Q 025163           63 MLADP----------AAALS----AIT-SKGGHFLE------------------APVSGSKQPAETGQL--------VIL  101 (257)
Q Consensus        63 ~v~~~----------~~~~~----~~~-~~g~~~~~------------------~pv~~~~~~~~~~~~--------~~~  101 (257)
                      |||++          ..++.    ... ..|..++.                  ..+...|..+..|+.        .++
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p~rvv  159 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHPSRIV  159 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCCCEEE
Confidence            99987          23222    000 11211111                  112224566777877        789


Q ss_pred             ecCChhhHHHHHHHHHH--hcCCeE-EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 025163          102 SAGEKALYDEAISALNV--IGKKAF-FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN  178 (257)
Q Consensus       102 ~~g~~~~~~~~~~~l~~--~~~~~~-~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s  178 (257)
                      +|++++..+++.++|..  ++..+. ++++.+.|++.|++.|++.++.+++++|+..+|++.|+|.+++.++++..+..+
T Consensus       160 ~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~ri~  239 (388)
T PRK15057        160 IGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPRIG  239 (388)
T ss_pred             EEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCCCC
Confidence            99988888999999854  454444 688999999999999999999999999999999999999999999998764333


Q ss_pred             hhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          179 PMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      +.+       +  ..-+||...|..||...+...+  .++++++++++.++-+..
T Consensus       240 ~~~-------l--~pG~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~  283 (388)
T PRK15057        240 NHY-------N--NPSFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR  283 (388)
T ss_pred             Ccc-------C--CCCCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence            221       0  1224688999999999887655  557789998877766554

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=99.94  E-value=7.2e-25  Score=193.45  Aligned_cols=219  Identities=12%  Similarity=0.067  Sum_probs=164.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHH---------------hhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEV---------------IKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~---------------~~~~dvii~~v   64 (257)
                      |||+|||+|.||..+|..|+++||+|++||+++++++.++...... ...+++.               .+++|+||+||
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            6899999999999999999999999999999999999875322211 1111111               24799999999


Q ss_pred             CCh---------HHHHH-------------------------------HHHhcC--------------CcEEecc--ccC
Q 025163           65 ADP---------AAALS-------------------------------AITSKG--------------GHFLEAP--VSG   88 (257)
Q Consensus        65 ~~~---------~~~~~-------------------------------~~~~~g--------------~~~~~~p--v~~   88 (257)
                      |++         ..++.                               .+...+              +.++.+|  +..
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~  163 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLP  163 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCC
Confidence            986         23332                               122222              2245566  444


Q ss_pred             CccccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025163           89 SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL  167 (257)
Q Consensus        89 ~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~  167 (257)
                      +.......+...++|| +++.+++++++++.++..++++++++.++..|+++|++.+..+++++|+..+|++.|+|++++
T Consensus       164 G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v  243 (415)
T PRK11064        164 GQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWEL  243 (415)
T ss_pred             CChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            4444444445577788 999999999999999988889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          168 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       168 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      .+.++..+....         +  ..-+|+...+..||..++.+   +.+.+.+++++++++-+..
T Consensus       244 ~~~~~~~~ri~~---------l--~pG~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~  295 (415)
T PRK11064        244 IRLANRHPRVNI---------L--QPGPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK  295 (415)
T ss_pred             HHHhccCCCccc---------C--CCCCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence            999986643210         1  12246778889999988754   4566788888877665544

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.94  E-value=1.5e-25  Score=191.16  Aligned_cols=227  Identities=14%  Similarity=0.213  Sum_probs=169.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT---   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~---   75 (257)
                      |||+|||+|.||+++|..|.++||+|++|+|+++             .++.++++++|+||+|+|+......  .+.   
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~~   71 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQALN   71 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999853             4788888999999999998643332  121   


Q ss_pred             -hcCCcEEe-----------------------cccc--CCcccc-----ccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163           76 -SKGGHFLE-----------------------APVS--GSKQPA-----ETGQLVILSAGEKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        76 -~~g~~~~~-----------------------~pv~--~~~~~~-----~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  124 (257)
                       ..+..+++                       .|+.  .++..+     ..++..++.+++.+.+++++++|+..+.+++
T Consensus        72 ~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~  151 (308)
T PRK14619         72 LPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVY  151 (308)
T ss_pred             CCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEE
Confidence             11333333                       3332  222221     2246678889999999999999999998888


Q ss_pred             EeCC-CC--h--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCc
Q 025163          125 FLGE-VG--N--------------GAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT  187 (257)
Q Consensus       125 ~~g~-~g--~--------------a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~  187 (257)
                      +.++ .|  .              +..+|+..|.....+..++.|+..++++.|++++++.++.  +.+.++.   ..+.
T Consensus       152 ~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~--g~gd~~~---t~~~  226 (308)
T PRK14619        152 TNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLS--GLGDLLA---TCTS  226 (308)
T ss_pred             ecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccccc--chhhhhe---eecC
Confidence            6666 22  2              2334488899999999999999999999999999998853  3233222   2234


Q ss_pred             ccCCCCCCCcccchH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          188 MLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       188 ~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      +.+++|.++|.+..+                .||++.+++++++.|+++|+++++++++.       ++.+...+++.+-
T Consensus       227 ~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~~~l~  299 (308)
T PRK14619        227 PLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQALEELM  299 (308)
T ss_pred             CCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHHHHHH
Confidence            555666655555555                89999999999999999999999999984       5566666666654


Q ss_pred             h
Q 025163          252 D  252 (257)
Q Consensus       252 ~  252 (257)
                      +
T Consensus       300 ~  300 (308)
T PRK14619        300 E  300 (308)
T ss_pred             c
Confidence            3

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.92  E-value=5e-24  Score=177.90  Aligned_cols=244  Identities=16%  Similarity=0.218  Sum_probs=194.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|+||++||..|+++||+|.+|.|+++..+++++.              ++..++|+.++++++|+|+++||+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            799999999999999999999999999999999999998764              245677999999999999999998


Q ss_pred             hHHHHH-----------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHH
Q 025163           67 PAAALS-----------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDE  111 (257)
Q Consensus        67 ~~~~~~-----------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~  111 (257)
                      ....+.                                   .+....+.++++|.++........+..++.+.|.+..++
T Consensus        82 ~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~  161 (329)
T COG0240          82 QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEK  161 (329)
T ss_pred             HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHH
Confidence            766555                                   111123678889999888888888888888999999999


Q ss_pred             HHHHHHHhcCCeEEeCC-C----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025163          112 AISALNVIGKKAFFLGE-V----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG  174 (257)
Q Consensus       112 ~~~~l~~~~~~~~~~g~-~----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~  174 (257)
                      ++.+|+.-.+++|...+ +                |....+.+..|+-.+++..+++|+..+....|-++++++.+-+.+
T Consensus       162 v~~~f~~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlG  241 (329)
T COG0240         162 VQALFSSPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLG  241 (329)
T ss_pred             HHHHhCCCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhccccccc
Confidence            99999986666665554 2                334445666899999999999999999999999999998877755


Q ss_pred             ----CCCchhhhcc-CCcccCCCCCCC------cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163          175 ----GIANPMFKGK-GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF  243 (257)
Q Consensus       175 ----~~~s~~~~~~-~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~  243 (257)
                          ++.|+.++|+ +..++.+..+..      ..+-+..+..+.+.+.++++++++|+++++++++.       ++.+.
T Consensus       242 DLilTCts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~-------~~~~~  314 (329)
T COG0240         242 DLILTCTSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY-------EGLDP  314 (329)
T ss_pred             ceeEecCCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------CCCCH
Confidence                6778777765 334443333221      23445677889999999999999999999999986       45566


Q ss_pred             HHHHHHHH
Q 025163          244 SAVFEVVK  251 (257)
Q Consensus       244 ~~l~~~~~  251 (257)
                      ...++.+-
T Consensus       315 ~~~~~~L~  322 (329)
T COG0240         315 KEAIEELM  322 (329)
T ss_pred             HHHHHHHh
Confidence            66666553

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.92  E-value=6.5e-24  Score=178.13  Aligned_cols=224  Identities=23%  Similarity=0.364  Sum_probs=178.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHh---hcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVI---KKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~   72 (257)
                      +.||+||+|.||+.||.++.++|+.|.+|||++++.+++.+.     .+..+.|++|.+   +....|+++|+....++.
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            369999999999999999999999999999999999998764     356777888865   568889999987653333


Q ss_pred             -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163           73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  121 (257)
                                                     .+..+|+.|+.+.|+|+...+..|+ ++|+||++++++.++++|..+..
T Consensus        84 ~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaA  162 (473)
T COG0362          84 VIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAA  162 (473)
T ss_pred             HHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHh
Confidence                                           6677899999999999999999999 69999999999999999999885


Q ss_pred             C------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCC
Q 025163          122 K------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQS  191 (257)
Q Consensus       122 ~------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~  191 (257)
                      +      +.|+|+-|+++.+|+++|-+.+.-+++++|+..+++. .|++.+.+.++..   .+...|.+.+....-+...
T Consensus       163 k~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~WN~geL~SYLIeIT~~IL~~k  242 (473)
T COG0362         163 KVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEEWNKGELDSYLIEITADILRKK  242 (473)
T ss_pred             hcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhccCcchHHHHHHHHHHHhhc
Confidence            5      5689999999999999999999999999999999998 8999877766654   4445555444332223334


Q ss_pred             CCCCCcccchHHHHH-------HHHHHHHhhcCCCchHHHH
Q 025163          192 NYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA  225 (257)
Q Consensus       192 ~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~  225 (257)
                      |...+-++-...-|.       +.....+-+.|+|+|+...
T Consensus       243 D~~~~kplvd~ILD~AgQKGTGkWt~~~AldlGvP~t~I~e  283 (473)
T COG0362         243 DEEGGKPLVDKILDKAGQKGTGKWTVISALDLGVPLTLITE  283 (473)
T ss_pred             CcccCCchHHHHHHHhcCCCcchhhHHHHHHcCCCcHHHHH
Confidence            444332332222232       6677888899999988654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.91  E-value=4.9e-23  Score=178.38  Aligned_cols=243  Identities=19%  Similarity=0.233  Sum_probs=167.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----------------cCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------------~~~~~~~~~~~dvii~~   63 (257)
                      |||+|||+|.||..+|..|+++||+|++|+|++ +.+.+++.|...                 ..++ +.+.++|+||+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~   80 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR-IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT   80 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH-HHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence            789999999999999999999999999999965 456676665432                 2344 566799999999


Q ss_pred             cCChHHHHH-------------------------HHHhc--CCcEEecc-----ccCCccc---cccCcEEEEecCChhh
Q 025163           64 LADPAAALS-------------------------AITSK--GGHFLEAP-----VSGSKQP---AETGQLVILSAGEKAL  108 (257)
Q Consensus        64 v~~~~~~~~-------------------------~~~~~--g~~~~~~p-----v~~~~~~---~~~~~~~~~~~g~~~~  108 (257)
                      ||++...+.                         .+...  ...++.++     +..++..   ...+++.+   ++.+.
T Consensus        81 vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~---~~~~~  157 (341)
T PRK08229         81 VKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI---EASPA  157 (341)
T ss_pred             ecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe---cCCch
Confidence            998866554                         11110  11222221     1111111   11233222   23455


Q ss_pred             HHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHHH
Q 025163          109 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM--------------------MNTFSEGLVLAEKSGLDPRTLL  168 (257)
Q Consensus       109 ~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~--------------------~~~~~E~~~l~~~~g~~~~~~~  168 (257)
                      ++++.++|+..+.++++.++++...|.|++.|.+....                    ..++.|++.++++.|++++.+.
T Consensus       158 ~~~~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~  237 (341)
T PRK08229        158 LRPFAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLT  237 (341)
T ss_pred             HHHHHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccC
Confidence            78899999999999999999999999999999743333                    3789999999999999987654


Q ss_pred             HHHhhc-----CCCchhhhccCCcccCCCCCCCcccchHHHHHH------------HHHHHHhhcCCCchHHHHHHHHHH
Q 025163          169 DVLDLG-----GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR------------LALALGDENAVSMPIAAAANEAFK  231 (257)
Q Consensus       169 ~~~~~~-----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~------------~~~~~a~~~g~~~p~~~~~~~~~~  231 (257)
                      ++...+     ...++.+......+...++..   ...|++|+.            .+++.++++|+++|+.+.++++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~~~~~  314 (341)
T PRK08229        238 PLPPAWIPRLLRLPDPLFRRLAGRMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLCALVH  314 (341)
T ss_pred             CCChhhhhhhhcCChHHHHHHHHHhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            433322     123344443333444444332   466999997            799999999999999999999999


Q ss_pred             HHHHcCCC-CCcHHHHHHHHH
Q 025163          232 KARSLGLG-DNDFSAVFEVVK  251 (257)
Q Consensus       232 ~~~~~g~~-~~d~~~l~~~~~  251 (257)
                      ...+.|.. -..-.+++.-+|
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~  335 (341)
T PRK08229        315 EAERAGARPAWSGEALLAELR  335 (341)
T ss_pred             HHHhCCCcCCCChHHHHHHhh
Confidence            99887653 333334555444

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=1.3e-22  Score=171.65  Aligned_cols=223  Identities=16%  Similarity=0.138  Sum_probs=169.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|++|...+..|++.||+|+.+|.+++|++.+++.                   | .+.++|..++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            999999999999999999999999999999999999888652                   1 45678999999999999


Q ss_pred             EEccCChHHHHH----------------------------------------HHHh----cCCcEEeccccCCccccccC
Q 025163           61 IGMLADPAAALS----------------------------------------AITS----KGGHFLEAPVSGSKQPAETG   96 (257)
Q Consensus        61 i~~v~~~~~~~~----------------------------------------~~~~----~g~~~~~~pv~~~~~~~~~~   96 (257)
                      |+|||++.....                                        .+..    +.+..+..|.|-..-.+-..
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D  160 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYD  160 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhh
Confidence            999987755321                                        1111    12334445543222222111


Q ss_pred             cE---EEEecCChh-hHHHHHHHHHHh---cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163           97 QL---VILSAGEKA-LYDEAISALNVI---GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD  169 (257)
Q Consensus        97 ~~---~~~~~g~~~-~~~~~~~~l~~~---~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~  169 (257)
                      .+   .+++|.+.+ +.+.+++++..+   ..+ +.+-++..+++.|++.|++.++-+.+++|...+|++.|+|.+.+.+
T Consensus       161 ~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p-~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~  239 (414)
T COG1004         161 FLYPDRIVIGVRSERAAAVLRELYAPFLRQDVP-ILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAE  239 (414)
T ss_pred             ccCCCeEEEccCChhHHHHHHHHHhhhhhcCCC-EEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            11   266676544 577888888775   444 4455569999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          170 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       170 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      .++...-..+.+-         ....||..+|+.||.+.++..++++|.+.++++++.+.-+..
T Consensus       240 gIGlD~RIG~~fl---------~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~q  294 (414)
T COG1004         240 GIGLDPRIGNHFL---------NAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNERR  294 (414)
T ss_pred             HcCCCchhhHhhC---------CCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            9886533222221         112378899999999999999999999999999988776654

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=99.89  E-value=1.9e-22  Score=148.98  Aligned_cols=121  Identities=41%  Similarity=0.748  Sum_probs=113.2

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCc-ccCCCCCCCcccchHHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRL  208 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~  208 (257)
                      |.+..+|+++|++...++.++.|++.++++.|+|++.+.++++.+++.|++++++.++ +..++|.++|+++.+.||+++
T Consensus         1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l   80 (122)
T PF14833_consen    1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL   80 (122)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence            6889999999999999999999999999999999999999999999999999999884 899999999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 025163          209 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV  250 (257)
Q Consensus       209 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~  250 (257)
                      +.+.+++.|+|+|+.+.+.+.++.+.++|++++|+++++++|
T Consensus        81 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~  122 (122)
T PF14833_consen   81 ALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL  122 (122)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence            999999999999999999999999999999999999999986

...

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.87  E-value=1e-20  Score=170.76  Aligned_cols=168  Identities=18%  Similarity=0.188  Sum_probs=135.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------------------~g-~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|.||..+|.+|+++|++|++||+++++.+.+.+                   .| +..++++.++++++|+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            68999999999999999999999999999999998776532                   13 56778999999999999


Q ss_pred             EEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCC---hh
Q 025163           61 IGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGE---KA  107 (257)
Q Consensus        61 i~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~---~~  107 (257)
                      |.|+|+....+.                              .+...+..++++|+...    ..++++.+++|+   ++
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e  160 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPE  160 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHH
Confidence            999999875544                              11123455666776522    234677888876   79


Q ss_pred             hHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHhhcCCCchh
Q 025163          108 LYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT-FSEGLVLAEKSGLDPRTLLDVLDLGGIANPM  180 (257)
Q Consensus       108 ~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~-~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~  180 (257)
                      .+++++++++.+|.++++++        |.+.|++.+-+..+ +.|++.++++.|++++++.++++.+.+.+|.
T Consensus       161 ~~~~~~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~  226 (495)
T PRK07531        161 TIRRAKEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA  226 (495)
T ss_pred             HHHHHHHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence            99999999999999998887        46666677766766 5999999999999999999999988777655

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=99.87  E-value=7.1e-20  Score=163.17  Aligned_cols=222  Identities=15%  Similarity=0.132  Sum_probs=164.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCC-------------------CcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g-------------------~~~~~~~~~~~~~~dv   59 (257)
                      |||+|||+|++|..+|..|+++|  ++|+++|+++++++.+++.+                   ...+++..++++++|+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            89999999999999999999985  78999999999999876431                   3355677888999999


Q ss_pred             EEEccCChHH--------------HHH-------------------------------HHHh--cC--CcEEeccccCCc
Q 025163           60 TIGMLADPAA--------------ALS-------------------------------AITS--KG--GHFLEAPVSGSK   90 (257)
Q Consensus        60 ii~~v~~~~~--------------~~~-------------------------------~~~~--~g--~~~~~~pv~~~~   90 (257)
                      +|+|||++..              ++.                               .+..  .|  +.+..+|.+-.+
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~  161 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAE  161 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCC
Confidence            9999986642              111                               1121  12  334456644332


Q ss_pred             cccccC---cEEEEecCC-----hhhHHHHHHHHHHhcC-CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025163           91 QPAETG---QLVILSAGE-----KALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG  161 (257)
Q Consensus        91 ~~~~~~---~~~~~~~g~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g  161 (257)
                      -.+...   .-.+++|+.     +++.++++++++.+.. .++.+.++..|++.|++.|.+.++.+++++|...+|++.|
T Consensus       162 G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~g  241 (473)
T PLN02353        162 GTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG  241 (473)
T ss_pred             CCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            222221   112555663     2357888999998863 4566777899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q 025163          162 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFK  231 (257)
Q Consensus       162 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~  231 (257)
                      +|..++.++++..+..++.+       +  ..-+|+...++.||...+...+++.|.+  .++++++.++-+
T Consensus       242 iD~~eV~~~~~~d~rig~~~-------l--~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~  304 (473)
T PLN02353        242 ADVSQVSHAVGKDSRIGPKF-------L--NASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMND  304 (473)
T ss_pred             CCHHHHHHHhCCCCcCCCCC-------C--CCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHH
Confidence            99999999988764321111       1  1224678889999999999999999988  778776664433

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.86  E-value=2.9e-20  Score=155.65  Aligned_cols=219  Identities=17%  Similarity=0.267  Sum_probs=152.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      |||+|||+|.||.+|+++|.++|+    +|++| +|++++.+.+.+.|+....++.++++++|+||+|||+....+.   
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~   80 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE   80 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence            899999999999999999999998    89999 9999999999888998888999999999999999986543333   


Q ss_pred             ---------------------HHH-hcCC-cEEe-ccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 ---------------------AIT-SKGG-HFLE-APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 ---------------------~~~-~~g~-~~~~-~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                                           .+. ..+. .++. +|............+....+++++.++.++++|+.+|. ++++++
T Consensus        81 l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e  159 (266)
T PLN02688         81 LRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDE  159 (266)
T ss_pred             HHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence                                 111 1111 2332 44332222221111111223378889999999999998 888754


Q ss_pred             ---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhh-cc--CC-cccCCCCCC
Q 025163          129 ---------VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFK-GK--GP-TMLQSNYAP  195 (257)
Q Consensus       129 ---------~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~-~~--~~-~~~~~~~~~  195 (257)
                               .|++..       +.+.++.++.|+   +.+.|++++...+++..+...++.+- ..  .+ .+...-.+|
T Consensus       160 ~~~d~~~~~~g~g~a-------~~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~~l~~~v~sp  229 (266)
T PLN02688        160 KLLDAVTGLSGSGPA-------YIFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPGQLKDMVTSP  229 (266)
T ss_pred             HHcchhHhhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCC
Confidence                     344333       456667788887   88899999999999887644444321 10  01 111111122


Q ss_pred             CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          196 AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       196 ~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      +       .-....++..++.|++-.+.+++...++++.+.+
T Consensus       230 g-------G~t~~~l~~l~~~g~~~~~~~a~~~~~~r~~~~~  264 (266)
T PLN02688        230 G-------GTTIAGVHELEKGGFRAALMNAVVAAAKRSRELS  264 (266)
T ss_pred             c-------hHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence            1       2235678888889999999999999999987754

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.85  E-value=8.3e-20  Score=157.74  Aligned_cols=242  Identities=14%  Similarity=0.164  Sum_probs=172.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC---------------CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g---------------~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||+++|..|+++| +|++|.|++++.+.+++.+               +...+++.++++++|+||+|||
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            79999999999999999999999 6888999999998887642               1245577788899999999999


Q ss_pred             ChHHHHH-------------------------------HHHh----cCCcEEeccccCCccccccCcEEEEecCChhhHH
Q 025163           66 DPAAALS-------------------------------AITS----KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYD  110 (257)
Q Consensus        66 ~~~~~~~-------------------------------~~~~----~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~  110 (257)
                      +....+.                               .+..    .....+.+|.+............++.+.+++..+
T Consensus        87 s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~  166 (341)
T PRK12439         87 SHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLAT  166 (341)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHH
Confidence            7765444                               1111    0112333443322222223334455666778888


Q ss_pred             HHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163          111 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM-----------------GCMMNTFSEGLVLAEKSGLDPRTLLDVLDL  173 (257)
Q Consensus       111 ~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~-----------------~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~  173 (257)
                      .++++|+.-+.+++...++-..+|.|..-|.+.                 ..+..++.|+..++++.|.++++++.+.+.
T Consensus       167 ~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~  246 (341)
T PRK12439        167 RLSPLFRTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGM  246 (341)
T ss_pred             HHHHHhCCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchh
Confidence            999999988888877777777777776665443                 455789999999999999999999987775


Q ss_pred             c----CCCchhhhcc--CCcccCCCCCCC------cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q 025163          174 G----GIANPMFKGK--GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN  241 (257)
Q Consensus       174 ~----~~~s~~~~~~--~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~  241 (257)
                      +    ++.|..++|+  +..+.++ .+..      ..+.+.....+.+.+.++++++++|+++.+++++.       ++.
T Consensus       247 GDl~~Tc~s~~sRN~~~G~~l~~g-~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il~-------~~~  318 (341)
T PRK12439        247 GDLIVTCTSQRSRNRHVGEQLGAG-KPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVIN-------HGS  318 (341)
T ss_pred             hhhhhhccCCCCccHHHHHHHHCC-CCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHHh-------CCC
Confidence            5    5666656654  2333332 2111      01344567789999999999999999999999984       566


Q ss_pred             cHHHHHHHHH
Q 025163          242 DFSAVFEVVK  251 (257)
Q Consensus       242 d~~~l~~~~~  251 (257)
                      +...+++.+-
T Consensus       319 ~~~~~~~~l~  328 (341)
T PRK12439        319 TVEQAYRGLI  328 (341)
T ss_pred             CHHHHHHHHh
Confidence            6776666653

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.84  E-value=3.3e-20  Score=153.78  Aligned_cols=223  Identities=25%  Similarity=0.365  Sum_probs=173.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC---C--CcccCCHHHHh---hcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVI---KKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~   72 (257)
                      +.||.||++.||..|+.+..++||.|.+|||+.++++++.++   |  +....|++|.+   +...+|++.|+....++.
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            469999999999999999999999999999999999988654   2  44577999876   568899999988777666


Q ss_pred             -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163           73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  121 (257)
                                                     .+..+|+-|+.+.++|+...++.|+ ++|+||+++++..++++|+.+..
T Consensus        87 ~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaa  165 (487)
T KOG2653|consen   87 FIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAA  165 (487)
T ss_pred             HHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHH
Confidence                                           5667899999999999999999999 69999999999999999998865


Q ss_pred             C-------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhh---cCCCchhhhccCCcccC
Q 025163          122 K-------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDL---GGIANPMFKGKGPTMLQ  190 (257)
Q Consensus       122 ~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~  190 (257)
                      +       +.++|+-|+++.+||++|-+.+.-++++.|+..+.++ .|++.+++.++...   +..-|...+.. ..++.
T Consensus       166 kv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~WN~geleSfLieIT-~dIlk  244 (487)
T KOG2653|consen  166 KVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDDWNKGELESFLIEIT-ADILK  244 (487)
T ss_pred             HhcCCCCCeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHhhcccchhHHHHHHh-HHHhh
Confidence            4       4789999999999999999999999999999999999 88988877776653   33333333321 12221


Q ss_pred             CCCCCCcccchHHHHH-------HHHHHHHhhcCCCchHHHH
Q 025163          191 SNYAPAFPLKHQQKDM-------RLALALGDENAVSMPIAAA  225 (257)
Q Consensus       191 ~~~~~~~~~~~~~kd~-------~~~~~~a~~~g~~~p~~~~  225 (257)
                      -+-..+..+-.-..|.       +.....+-+.|+|.|+...
T Consensus       245 ~~d~~G~~lv~kI~D~aGqKGTGkwt~~~Ale~g~Pv~lI~e  286 (487)
T KOG2653|consen  245 FKDEDGKPLVDKILDKAGQKGTGKWTVISALELGVPVTLIGE  286 (487)
T ss_pred             eeccCCChHHHHHHhhhcCCCccHHHHHHHHHhCCChHHHHH
Confidence            1111111111111122       5667778888999888644

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.84  E-value=1.4e-19  Score=156.21  Aligned_cols=242  Identities=12%  Similarity=0.044  Sum_probs=174.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI   54 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~   54 (257)
                      |||+|||+|+||+++|..|+++|       |+|.+|.|+++     ..+.+++.              ++..++|+.+++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            69999999999999999999997       89999999886     36666653              234567888999


Q ss_pred             hcCceEEEccCChHHHHH--HHH------------------------------------hcCCcEEeccccCCccccccC
Q 025163           55 KKCTITIGMLADPAAALS--AIT------------------------------------SKGGHFLEAPVSGSKQPAETG   96 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~--~~~------------------------------------~~g~~~~~~pv~~~~~~~~~~   96 (257)
                      +++|+|+++||+....+.  .+.                                    ...+.++.+|.++........
T Consensus        92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva~~~p  171 (365)
T PTZ00345         92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVAREEF  171 (365)
T ss_pred             hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHHcCCC
Confidence            999999999998766544  110                                    112334556666666666666


Q ss_pred             cEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-CC----------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163           97 QLVILSAGEKALYDEAISALNVIGKKAFFLGE-VG----------------NGAKMKLVVNMIMGCMMNTFSEGLVLAEK  159 (257)
Q Consensus        97 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~g----------------~a~~~kl~~n~~~~~~~~~~~E~~~l~~~  159 (257)
                      +..++.+.|.+..+.++++|+.-..+++...+ +|                ....+++..|+..+++..++.|+..++++
T Consensus       172 t~~vias~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a  251 (365)
T PTZ00345        172 SEATIGCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKI  251 (365)
T ss_pred             cEEEEEeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHH
Confidence            77778888899889999999866666665554 32                22334455889999999999999999999


Q ss_pred             cC--CCHHHHHHHHhhc----CCCchhhhcc--CCcccCCC--CCCC--------cccchHHHHHHHHHHHHhhcCC--C
Q 025163          160 SG--LDPRTLLDVLDLG----GIANPMFKGK--GPTMLQSN--YAPA--------FPLKHQQKDMRLALALGDENAV--S  219 (257)
Q Consensus       160 ~g--~~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~--~~~~--------~~~~~~~kd~~~~~~~a~~~g~--~  219 (257)
                      .|  .++++++.+.+.+    ++.|  ++|+  +..+.++.  .+..        -.+.+.....+.+.++++++++  +
T Consensus       252 ~g~~~~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~~  329 (365)
T PTZ00345        252 FFPNVMDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKE  329 (365)
T ss_pred             hCCCCCccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCCCC
Confidence            97  4899998877755    4555  4443  33444321  1100        1233456677899999999999  8


Q ss_pred             chHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          220 MPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       220 ~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      +|+++++++++.       ++.+...+++.+.
T Consensus       330 ~Pi~~~vy~il~-------~~~~~~~~~~~l~  354 (365)
T PTZ00345        330 FPLFTVTYKIAF-------EGADPSSLIDVLS  354 (365)
T ss_pred             CCHHHHHHHHHh-------CCCCHHHHHHHHH
Confidence            999999999984       4555556555554

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.83  E-value=6.2e-19  Score=151.77  Aligned_cols=241  Identities=16%  Similarity=0.198  Sum_probs=156.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHh-hcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVI-KKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~-~~~dvii~~v~   65 (257)
                      |||+|||+|.||++++..|.++|++|++|+|++++++.+++.+              ++..+++.+.+ .++|+||+|||
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk   80 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP   80 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence            8999999999999999999999999999999999888887631              12345666665 58899999999


Q ss_pred             ChHHHHH--HHHh----cCCcEEe-----------------------ccc--cCCccc-----cccCcEEEEecCChhhH
Q 025163           66 DPAAALS--AITS----KGGHFLE-----------------------APV--SGSKQP-----AETGQLVILSAGEKALY  109 (257)
Q Consensus        66 ~~~~~~~--~~~~----~g~~~~~-----------------------~pv--~~~~~~-----~~~~~~~~~~~g~~~~~  109 (257)
                      +....+.  .+..    .+..++.                       .|+  ..+|..     ........+.+.+.+..
T Consensus        81 s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~  160 (326)
T PRK14620         81 TQQLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLG  160 (326)
T ss_pred             HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHH
Confidence            8876654  2221    1111110                       011  111111     11112234445556666


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCC--CHHHHH--
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG-----------------CMMNTFSEGLVLAEKSGL--DPRTLL--  168 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~-----------------~~~~~~~E~~~l~~~~g~--~~~~~~--  168 (257)
                      +++.++|+.-+.+++...++....|.|++-|.+..                 .+...+.|+..++++.|.  +++++.  
T Consensus       161 ~~l~~~l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl  240 (326)
T PRK14620        161 SSLISKLSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGP  240 (326)
T ss_pred             HHHHHHHCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcc
Confidence            77788887777777777778888899999887543                 236689999999999987  788885  


Q ss_pred             ----HHHhhcCCCchhhhcc--CCcccCCCC-----CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          169 ----DVLDLGGIANPMFKGK--GPTMLQSNY-----APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       169 ----~~~~~~~~~s~~~~~~--~~~~~~~~~-----~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                          +++..  +.+...+|+  +..+..+..     ...-+.-.....++.+++.++++|+++|+.+.+++++.      
T Consensus       241 ~g~gdl~~t--~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~~------  312 (326)
T PRK14620        241 SCLGDLILT--CTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLLY------  312 (326)
T ss_pred             chhhhhhhe--ecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHHh------
Confidence                44421  222222222  111111111     01111223445568999999999999999999998873      


Q ss_pred             CCCCcHHHHHHHH
Q 025163          238 LGDNDFSAVFEVV  250 (257)
Q Consensus       238 ~~~~d~~~l~~~~  250 (257)
                       ++.+...+++.+
T Consensus       313 -~~~~~~~~~~~~  324 (326)
T PRK14620        313 -ENISLEKTISVI  324 (326)
T ss_pred             -CCCCHHHHHHHH
Confidence             455555555543

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=99.83  E-value=1.6e-19  Score=152.49  Aligned_cols=176  Identities=19%  Similarity=0.252  Sum_probs=132.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvi   60 (257)
                      ++|+|||+|++|.++|..++++|++|+++|.|+.+++.+++-                   | .+.++++.++ +.||++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l-~~~dv~   88 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEEL-KECDVF   88 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhc-ccCCEE
Confidence            589999999999999999999999999999999998887652                   2 4556677665 499999


Q ss_pred             EEccCChHHHHH-----------------------------------------HHHh-cCCcE-Ee-----cc--ccCCc
Q 025163           61 IGMLADPAAALS-----------------------------------------AITS-KGGHF-LE-----AP--VSGSK   90 (257)
Q Consensus        61 i~~v~~~~~~~~-----------------------------------------~~~~-~g~~~-~~-----~p--v~~~~   90 (257)
                      ++|||++-....                                         .+.. .|..+ .|     +|  +..+.
T Consensus        89 iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~  168 (436)
T COG0677          89 IICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGN  168 (436)
T ss_pred             EEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCc
Confidence            999997644311                                         2222 22222 11     22  11111


Q ss_pred             cccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163           91 QPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD  169 (257)
Q Consensus        91 ~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~  169 (257)
                      .........-++|| ++.+.+.+..+++.+-..++.+.+...|++.|+..|.+...++++.+|...+|++.|++..++.+
T Consensus       169 ~~~el~~~~kVIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIe  248 (436)
T COG0677         169 VLKELVNNPKVIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIE  248 (436)
T ss_pred             hhhhhhcCCceeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            11111122234444 67778888999999988888888899999999999999999999999999999999999999999


Q ss_pred             HHhhcCCC
Q 025163          170 VLDLGGIA  177 (257)
Q Consensus       170 ~~~~~~~~  177 (257)
                      +.++....
T Consensus       249 aAnt~P~~  256 (436)
T COG0677         249 AANTKPRV  256 (436)
T ss_pred             HhccCCce
Confidence            99887443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.83  E-value=2.2e-19  Score=151.23  Aligned_cols=220  Identities=19%  Similarity=0.269  Sum_probs=151.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCch-hHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~-~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|+||.+|+.+|.++|    ++|++|+|+++ +++.+... |+....++.++++++|+||+|||++...+.  
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~vl~   83 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEALI   83 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHHHH
Confidence            79999999999999999999998    78999999764 67777664 888888899999999999999998877665  


Q ss_pred             HHH---hcCCcEEe-----------------ccccCCcc---ccccCcEEEEecCC---hhhHHHHHHHHHHhcCCeE--
Q 025163           73 AIT---SKGGHFLE-----------------APVSGSKQ---PAETGQLVILSAGE---KALYDEAISALNVIGKKAF--  124 (257)
Q Consensus        73 ~~~---~~g~~~~~-----------------~pv~~~~~---~~~~~~~~~~~~g~---~~~~~~~~~~l~~~~~~~~--  124 (257)
                      .+.   ..+..+++                 .|+.+..+   .+..+.+..+++++   ++.++.++++|+.+|..++  
T Consensus        84 ~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~~v~  163 (279)
T PRK07679         84 PFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVSVVE  163 (279)
T ss_pred             HHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEEEeC
Confidence            111   11222333                 23444422   33334455666665   5678899999999997443  


Q ss_pred             ----E--eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC-Cchhhh--ccCCcccCCCC-C
Q 025163          125 ----F--LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI-ANPMFK--GKGPTMLQSNY-A  194 (257)
Q Consensus       125 ----~--~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~-~s~~~~--~~~~~~~~~~~-~  194 (257)
                          +  ++..|++..       +.+.++.++.|+   +.+.|++++...+++..+.. ...+..  .+.+..+..++ +
T Consensus       164 e~~~~~~~a~~Gsgpa-------~~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v~s  233 (279)
T PRK07679        164 EEDMHAVTALSGSGPA-------YIYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEITS  233 (279)
T ss_pred             HHHhhhHHHhhcCHHH-------HHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCC
Confidence                2  233333332       233444444444   88999999999999886422 223333  34556666666 6


Q ss_pred             CCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          195 PAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       195 ~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      |+++.       ...++..++.|+.--+.+++...++++.+.+
T Consensus       234 pgg~t-------~~gl~~l~~~~~~~~i~~a~~~a~~r~~~l~  269 (279)
T PRK07679        234 PGGTT-------EAGIEVLQEHRFQQALISCITQATQRSHNLG  269 (279)
T ss_pred             CchHH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            66654       3356667778888888888888888876654

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.81  E-value=6.6e-19  Score=151.01  Aligned_cols=227  Identities=11%  Similarity=0.012  Sum_probs=166.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC--------CeEEEEcC-----CchhHHHHHHC--------C------CcccCCHHHHh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g--------~~V~~~~r-----~~~~~~~l~~~--------g------~~~~~~~~~~~   54 (257)
                      ||+|||+|+||+++|..|+++|        |+|++|.|     +++..+.+++.        |      ++..+|+++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            7999999999999999999999        99999998     44555555442        2      23457888999


Q ss_pred             hcCceEEEccCChHHHHH-------------------------------------HHHhcCCcEEeccccCCccccccCc
Q 025163           55 KKCTITIGMLADPAAALS-------------------------------------AITSKGGHFLEAPVSGSKQPAETGQ   97 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~-------------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~   97 (257)
                      +++|+||++||+....+.                                     .+ ...+.++.+|.++........+
T Consensus        81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l-~~~~~~lsGP~~A~Eva~~~pt  159 (342)
T TIGR03376        81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL-GIPCGVLSGANLANEVAKEKFS  159 (342)
T ss_pred             hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh-CCCeEEeeCcchHHHHHcCCCc
Confidence            999999999998877654                                     11 2345567788877777777777


Q ss_pred             EEEEecCC----hhhHHHHHHHHHHhcCCeEEeCC-CC--hHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 025163           98 LVILSAGE----KALYDEAISALNVIGKKAFFLGE-VG--NGAK--------------MKLVVNMIMGCMMNTFSEGLVL  156 (257)
Q Consensus        98 ~~~~~~g~----~~~~~~~~~~l~~~~~~~~~~g~-~g--~a~~--------------~kl~~n~~~~~~~~~~~E~~~l  156 (257)
                      ..++.+.+    .+..+.++++|+.-..+++...+ +|  -+..              +++..|+..+++..++.|+..+
T Consensus       160 ~~~ia~~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l  239 (342)
T TIGR03376       160 ETTVGYRDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKF  239 (342)
T ss_pred             eEEEEeCCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            77888888    78888999999866666555544 33  2333              3345799999999999999999


Q ss_pred             HHHcCCCHH--HHHHHHhhc----CCCchhhhcc--CCcccCCCCCCC--------cccchHHHHHHHHHHHHhhcCCC-
Q 025163          157 AEKSGLDPR--TLLDVLDLG----GIANPMFKGK--GPTMLQSNYAPA--------FPLKHQQKDMRLALALGDENAVS-  219 (257)
Q Consensus       157 ~~~~g~~~~--~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~~--------~~~~~~~kd~~~~~~~a~~~g~~-  219 (257)
                      +++.|-+++  +++.+.+.+    ++.|  .+|+  +..+.++..+..        ..+-+.....+.+.+++++++++ 
T Consensus       240 ~~~~g~~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~  317 (342)
T TIGR03376       240 ARMFFPTGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDD  317 (342)
T ss_pred             HHHhCCCCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCc
Confidence            999999777  888776654    3444  3433  334443122211        01233455678899999999999 


Q ss_pred             -chHHHHHHHHHH
Q 025163          220 -MPIAAAANEAFK  231 (257)
Q Consensus       220 -~p~~~~~~~~~~  231 (257)
                       +|+++++++++.
T Consensus       318 ~~Pi~~~vy~il~  330 (342)
T TIGR03376       318 EFPLFEAVYQILY  330 (342)
T ss_pred             CCCHHHHHHHHHh
Confidence             999999999985

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.81  E-value=1.1e-18  Score=147.72  Aligned_cols=161  Identities=16%  Similarity=0.195  Sum_probs=121.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------C-----------------CCcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------H-----------------GATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------~-----------------g~~~~~~~~~~~~~   56 (257)
                      .||+|||+|.||..+|..|+++||+|++||+++++++++.+       .                 +++.++++.+++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            37999999999999999999999999999999998877643       1                 13456788889999


Q ss_pred             CceEEEccCChHHHHH--------------------------HHH---h-----cCCcEEeccccCCccccccCcEEEEe
Q 025163           57 CTITIGMLADPAAALS--------------------------AIT---S-----KGGHFLEAPVSGSKQPAETGQLVILS  102 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~---~-----~g~~~~~~pv~~~~~~~~~~~~~~~~  102 (257)
                      +|+||.|+|++...+.                          .+.   .     .|.+|+ +|+.+       ++++.++
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~-------~~Lve~v  153 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHK-------MKLVELI  153 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCccc-------CceEEEe
Confidence            9999999999876544                          000   0     133333 33322       3577888


Q ss_pred             cC---ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          103 AG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       103 ~g---~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      +|   +++.+++++++++.++++++++++ ..+....       .+....++|++.+.++.-.+++++..++..+.+.
T Consensus       154 ~g~~t~~~~~~~~~~~l~~lg~~~v~v~d-~~Gf~~n-------Rl~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~  223 (288)
T PRK09260        154 RGLETSDETVQVAKEVAEQMGKETVVVNE-FPGFVTS-------RISALVGNEAFYMLQEGVATAEDIDKAIRLGLNF  223 (288)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCeEEEecC-cccHHHH-------HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCC
Confidence            88   899999999999999999999986 3333322       2334577799998887667899999988765444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.80  E-value=9.3e-18  Score=143.58  Aligned_cols=168  Identities=15%  Similarity=0.197  Sum_probs=121.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----C--------------CcccCCHHHHhhcCceEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g--------------~~~~~~~~~~~~~~dvii   61 (257)
                      +||+|||+|.||..+|..|+++|++|++||+++++++.+.+.     |              +..++++.++++++|+||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            479999999999999999999999999999999888776541     2              245667888889999999


Q ss_pred             EccCChHHHHH----HHH---hcC----------------------CcEEeccccCCccccccCcEEEEecC---ChhhH
Q 025163           62 GMLADPAAALS----AIT---SKG----------------------GHFLEAPVSGSKQPAETGQLVILSAG---EKALY  109 (257)
Q Consensus        62 ~~v~~~~~~~~----~~~---~~g----------------------~~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~  109 (257)
                      +|||.......    .+.   ..+                      ..++....+.++.   .+.+..++.+   +++.+
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~~~~~~~~~ig~h~~~p~~---~~~l~~i~~g~~t~~~~~  161 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQAVTRPERFVGTHFFTPAD---VIPLVEVVRGDKTSPQTV  161 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEccCCCCc---cCceEEEeCCCCCCHHHH
Confidence            99998753322    111   011                      1122222222211   1224445554   68899


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN  178 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s  178 (257)
                      +.++++++.+|..+++++....+.   +++|.+    ...++|++.++++.+++++++.++++.+.++.
T Consensus       162 ~~v~~l~~~~G~~~v~~~~d~~G~---i~nr~~----~~~~~Ea~~l~~~g~~~~~~id~~~~~~~g~~  223 (311)
T PRK06130        162 ATTMALLRSIGKRPVLVKKDIPGF---IANRIQ----HALAREAISLLEKGVASAEDIDEVVKWSLGIR  223 (311)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCCc---HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC
Confidence            999999999999888887533333   555553    46799999999999999999999998766553

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.80  E-value=3.9e-18  Score=153.92  Aligned_cols=156  Identities=22%  Similarity=0.358  Sum_probs=123.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..||.+|+.+|++|++||++++++++.           .+.|             ++.++++++ +.+|
T Consensus         9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~a   87 (507)
T PRK08268          9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LADC   87 (507)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCCC
Confidence            69999999999999999999999999999999988773           4455             466778866 4699


Q ss_pred             ceEEEccCChHHHHH--------------------------HHH---h-----cCCcEEe-ccccCCccccccCcEEEEe
Q 025163           58 TITIGMLADPAAALS--------------------------AIT---S-----KGGHFLE-APVSGSKQPAETGQLVILS  102 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~---~-----~g~~~~~-~pv~~~~~~~~~~~~~~~~  102 (257)
                      |+||.|||.+..++.                          .+.   .     .|++|++ +|++         +++.++
T Consensus        88 DlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~~~~~p~r~~G~hff~Pa~v~---------~LvEvv  158 (507)
T PRK08268         88 DLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAAALKHPERVAGLHFFNPVPLM---------KLVEVV  158 (507)
T ss_pred             CEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEeecCCcccC---------eeEEEe
Confidence            999999999988776                          000   0     1444444 3332         467777


Q ss_pred             cC---ChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          103 AG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       103 ~g---~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      +|   +++.++.+.++++.+++.++++++ .|      ++.|-+.   ..++.|++.++++.+.+++++.++++.+.+
T Consensus       159 ~g~~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll---~~~~~Ea~~l~~~g~~~~~~iD~al~~~~G  227 (507)
T PRK08268        159 SGLATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAA---RPYYTEALRVLEEGVADPATIDAILREAAG  227 (507)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence            75   889999999999999999999987 56      3444333   358999999999999999999999986544

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.79  E-value=2.6e-17  Score=140.47  Aligned_cols=216  Identities=17%  Similarity=0.193  Sum_probs=144.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------------cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..+|..|+++||+|++|+| +++.+.+++.|...             .++.+++.+++|+||+|||+.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            8999999999999999999999999999999 88888888765421             345566668899999999987


Q ss_pred             HHHHH--HHHh---cC----------------------------CcEEeccccCCccccccCcEEEEecC----ChhhHH
Q 025163           68 AAALS--AITS---KG----------------------------GHFLEAPVSGSKQPAETGQLVILSAG----EKALYD  110 (257)
Q Consensus        68 ~~~~~--~~~~---~g----------------------------~~~~~~pv~~~~~~~~~~~~~~~~~g----~~~~~~  110 (257)
                      +..+.  .+..   .+                            +.++.++..++......+.-.+.+|.    ..+..+
T Consensus        80 ~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~  159 (305)
T PRK12921         80 QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTR  159 (305)
T ss_pred             CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHH
Confidence            65544  1110   11                            11222222222111111111233332    234566


Q ss_pred             HHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--HHH
Q 025163          111 EAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP--RTL  167 (257)
Q Consensus       111 ~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~~--~~~  167 (257)
                      .+.++|...+..+....++....|.|++.|...+.                     +...+.|+..++++.|+++  +.+
T Consensus       160 ~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~  239 (305)
T PRK12921        160 AVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVV  239 (305)
T ss_pred             HHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHH
Confidence            78888888887777777799999999999976543                     3457899999999999763  333


Q ss_pred             HHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163          168 LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKKAR  234 (257)
Q Consensus       168 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~~~  234 (257)
                      .+.+..-...                 +....+.|+.|+            +.+++.++++|+++|..+.+++++....
T Consensus       240 ~~~~~~~~~~-----------------~~~~~sSm~~D~~~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~~~~~~~  301 (305)
T PRK12921        240 EEIVKIFAGA-----------------PGDMKTSMLRDMEKGRPLEIDHLQGVLLRRARAHGIPTPILDTVYALLKAYE  301 (305)
T ss_pred             HHHHHHHhcc-----------------CCCCCcHHHHHHHcCCcccHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence            3333210000                 000112233333            6799999999999999999999997653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.79  E-value=4.3e-18  Score=153.28  Aligned_cols=216  Identities=20%  Similarity=0.220  Sum_probs=147.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~   56 (257)
                      .||+|||+|.||..||.+|+++||+|++||++++++++.           .+.|             ++.++++++ +.+
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            479999999999999999999999999999999987653           3334             346778865 469


Q ss_pred             CceEEEccCChHHHHH--------------------------HHH--------hcCCcEEe-ccccCCccccccCcEEEE
Q 025163           57 CTITIGMLADPAAALS--------------------------AIT--------SKGGHFLE-APVSGSKQPAETGQLVIL  101 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~--------~~g~~~~~-~pv~~~~~~~~~~~~~~~  101 (257)
                      ||+||.|+|.+..++.                          .+.        ..|++|++ +|++         .++.+
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~~~~~p~r~~G~HFf~Papv~---------~LvEv  155 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAAGLARPERVAGLHFFNPAPVM---------ALVEV  155 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCcccceEEEeccCccccC---------ceEEE
Confidence            9999999999877766                          000        12444444 3333         46788


Q ss_pred             ecC---ChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          102 SAG---EKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       102 ~~g---~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      ++|   +++.++.+.++++.+|+.++++++ .|.      +.|-+.   ..++.|++.++++.+.+++++.++++.+.+.
T Consensus       156 v~g~~Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~~~~G~  226 (503)
T TIGR02279       156 VSGLATAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALRDGAGF  226 (503)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCCC
Confidence            888   899999999999999999999987 552      333333   4689999999999999999999999875444


Q ss_pred             chhhhccCCcccCCCCCCCcccchHHHHHHHHHHHH--hhcCCCchHHHHHHHHHHHHHHcCCCCCcHH
Q 025163          178 NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALG--DENAVSMPIAAAANEAFKKARSLGLGDNDFS  244 (257)
Q Consensus       178 s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~  244 (257)
                      .     ++|.- ..|+.   .++..+.-.+.+.+..  ...-.|.|+++...+.-+.+.+.|.|..+|.
T Consensus       227 ~-----mGPf~-l~D~~---Gldv~~~v~~~~~~~~~~~~~~~p~~~~~~~v~~G~lG~KtG~GfY~y~  286 (503)
T TIGR02279       227 P-----MGPFE-LTDLI---GHDVNFAVTCSVFNAFWQDRRFLPSLVQQELVIAGRLGRKSGLGVYDYR  286 (503)
T ss_pred             C-----cCHHH-HHHHh---hhHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHCCCCccccCCEeeeCC
Confidence            2     11100 01111   1222222222222211  1112345666666655556677777777764

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.78  E-value=2.3e-17  Score=141.60  Aligned_cols=171  Identities=12%  Similarity=0.157  Sum_probs=132.5

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 025163            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK   55 (257)
Q Consensus         1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~   55 (257)
                      |||.|.|+|+-                    |.+||.+|+++||+|++|||+++     +.+.+.+.|++.++++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~   80 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK   80 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence            89999999974                    88899999999999999999987     556677789988889999999


Q ss_pred             cCceEEEccCChHHHHHH---HH---hcCCcEEeccc---------------------------cCCccccccCcEEEEe
Q 025163           56 KCTITIGMLADPAAALSA---IT---SKGGHFLEAPV---------------------------SGSKQPAETGQLVILS  102 (257)
Q Consensus        56 ~~dvii~~v~~~~~~~~~---~~---~~g~~~~~~pv---------------------------~~~~~~~~~~~~~~~~  102 (257)
                      ++|+||+|+|++...+..   +.   ..+..+++..-                           .++......+.+.++.
T Consensus        81 ~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~  160 (342)
T PRK12557         81 HGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIA  160 (342)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchheEEe
Confidence            999999999988744430   00   01111122100                           1111222333445665


Q ss_pred             cC--------ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          103 AG--------EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       103 ~g--------~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      ++        +++.+++++++|+.+|.++++++. +.+..+|+++|++.+....+..|++.++++.+.+++.+.+-+-
T Consensus       161 gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~-g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~  237 (342)
T PRK12557        161 GKTTNGTELATEEQIEKCVELAESIGKEPYVVPA-DVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQI  237 (342)
T ss_pred             CCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            54        888999999999999998877774 9999999999999999999999999999999999987775544

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.78  E-value=2.6e-17  Score=140.27  Aligned_cols=221  Identities=18%  Similarity=0.229  Sum_probs=142.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----------cCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----------~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|||+|.||+.+|..|.++|++|++++|++++.+.+++.|...           ..++.++ +++|+||+|||..+.
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~   79 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL   79 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH
Confidence            8999999999999999999999999999999989988888777532           3455555 889999999998765


Q ss_pred             HHH--HHHh---cCCcEEe--cc--------------------------ccCC--ccccccCcEEEEecC-C--hhhHHH
Q 025163           70 ALS--AITS---KGGHFLE--AP--------------------------VSGS--KQPAETGQLVILSAG-E--KALYDE  111 (257)
Q Consensus        70 ~~~--~~~~---~g~~~~~--~p--------------------------v~~~--~~~~~~~~~~~~~~g-~--~~~~~~  111 (257)
                      ...  .+..   .+..++.  .+                          ..++  ......+.  +.+|. +  .+..+.
T Consensus        80 ~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~  157 (304)
T PRK06522         80 PAALPSLAPLLGPDTPVLFLQNGVGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEA  157 (304)
T ss_pred             HHHHHHHhhhcCCCCEEEEecCCCCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHH
Confidence            443  1110   0111110  00                          0011  01111122  22222 2  233667


Q ss_pred             HHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--HHHH
Q 025163          112 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP--RTLL  168 (257)
Q Consensus       112 ~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~~--~~~~  168 (257)
                      +.++|...+.++....++....|.|++.|...+.                     +...+.|+..++++.|+++  +.+.
T Consensus       158 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~  237 (304)
T PRK06522        158 LADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVR  237 (304)
T ss_pred             HHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHH
Confidence            8888888888776676799999999998865543                     2457889999999988653  4444


Q ss_pred             HHHhhc-----CCCchhhhc-cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          169 DVLDLG-----GIANPMFKG-KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       169 ~~~~~~-----~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                      +.+...     ...+.+... ...+...-|+           =.+.+++.++++|+++|..+.++++++...+
T Consensus       238 ~~~~~~~~~~~~~~sSm~~D~~~gr~tEid~-----------i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~~  299 (304)
T PRK06522        238 EYVRQVIQKTAANTSSMLQDLEAGRPTEIDA-----------IVGYVLRRGRKHGIPTPLNDALYGLLKAKES  299 (304)
T ss_pred             HHHHHHhhccCCCCchHHHHHHcCCCcccch-----------hccHHHHHHHHcCCCCcHHHHHHHHHHHHHH
Confidence            433321     111111110 0011111111           1266899999999999999999999877644

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.77  E-value=7.4e-17  Score=135.62  Aligned_cols=166  Identities=18%  Similarity=0.330  Sum_probs=124.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhcCceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||..++..|.++|+  +|++|||++++.+.+.+.|+. ...++.++. ++|+||+|||.....+.     
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHh
Confidence            899999999999999999999996  799999999999988888864 455777765 59999999998776654     


Q ss_pred             --------------------HHHh-cCCcEEec-cccCC----cccc----ccCcEEEEec---CChhhHHHHHHHHHHh
Q 025163           73 --------------------AITS-KGGHFLEA-PVSGS----KQPA----ETGQLVILSA---GEKALYDEAISALNVI  119 (257)
Q Consensus        73 --------------------~~~~-~g~~~~~~-pv~~~----~~~~----~~~~~~~~~~---g~~~~~~~~~~~l~~~  119 (257)
                                          .+.. .+..|+.. |+.|.    +..+    ..+...++.+   .+++.++.++++++.+
T Consensus        80 ~l~~~~iv~d~gs~k~~i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~  159 (275)
T PRK08507         80 DIKENTTIIDLGSTKAKIIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGL  159 (275)
T ss_pred             ccCCCCEEEECccchHHHHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHh
Confidence                                1111 22457775 88653    3322    2566656664   4567889999999999


Q ss_pred             cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          120 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      |.+++++++.++...+++++++.. ....++.+++  .  .+.+.+.+.++..
T Consensus       160 G~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~--~--~~~~~~~~~~~~~  207 (275)
T PRK08507        160 GMRIVYMDAKEHDLHAAYISHLPH-IISFALANTV--L--KEEDERNIFDLAG  207 (275)
T ss_pred             CCEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHH--H--hcCChHHHHhhcc
Confidence            999999999999999999999864 4444555543  1  3556666555544

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.75  E-value=1.7e-16  Score=135.90  Aligned_cols=214  Identities=20%  Similarity=0.205  Sum_probs=140.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||+.+|..|+++||+|+++.|++  .+.+.+.|...              .+++ +....+|+||+|||.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~   82 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD--YEAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT   82 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC--HHHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence            799999999999999999999999999999975  35565555321              1122 345678999999998


Q ss_pred             hHHHHH-------------------------HHHhc--------CCcEEeccccCCcc--ccccCcEEEE-ecC-C----
Q 025163           67 PAAALS-------------------------AITSK--------GGHFLEAPVSGSKQ--PAETGQLVIL-SAG-E----  105 (257)
Q Consensus        67 ~~~~~~-------------------------~~~~~--------g~~~~~~pv~~~~~--~~~~~~~~~~-~~g-~----  105 (257)
                      .+..+.                         .+...        ++.++.+...++..  ....+.+.+- ..+ +    
T Consensus        83 ~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~  162 (313)
T PRK06249         83 TANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDG  162 (313)
T ss_pred             CChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccch
Confidence            765443                         11111        12222222222221  1112332221 122 2    


Q ss_pred             -hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCC
Q 025163          106 -KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLD  163 (257)
Q Consensus       106 -~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~---------------------~~~~~E~~~l~~~~g~~  163 (257)
                       .+..+.+.++|+..+..+....++....|.|++.|...+..                     ...+.|+..++++.|++
T Consensus       163 ~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~  242 (313)
T PRK06249        163 ITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHT  242 (313)
T ss_pred             HHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCC
Confidence             35566788889999988888888999999999988765432                     45788999999998876


Q ss_pred             H--HHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHH
Q 025163          164 P--RTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEA  229 (257)
Q Consensus       164 ~--~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~  229 (257)
                      .  +.+.+.+......                 +. ..+.|+.|+            +.+++.++++|+++|..+.++++
T Consensus       243 ~~~~~~~~~~~~~~~~-----------------~~-~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~Gi~~P~~~~l~~~  304 (313)
T PRK06249        243 LPEGYADHMLAVTERM-----------------PD-YRPSMYHDFEEGRPLELEAIYANPLAAARAAGCAMPRVEMLYQA  304 (313)
T ss_pred             CChhHHHHHHHHhhcC-----------------CC-CCChHHHHHHCCCcccHHHHhhHHHHHHHHhCCCCcHHHHHHHH
Confidence            2  2232222211000                 00 112344443            78999999999999999999999


Q ss_pred             HHHHHH
Q 025163          230 FKKARS  235 (257)
Q Consensus       230 ~~~~~~  235 (257)
                      ++...+
T Consensus       305 l~~~e~  310 (313)
T PRK06249        305 LEFLDR  310 (313)
T ss_pred             HHHHHh
Confidence            887644

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.74  E-value=3e-16  Score=131.41  Aligned_cols=226  Identities=16%  Similarity=0.156  Sum_probs=143.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g---~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||..++..|.++|   ++|.+|+|++++.+++.+. |+....+..++++++|+||+|||+....+.  .+
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~~~~~v~~~l   82 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQVMEEVLSEL   82 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHHHHHHHHHHH
Confidence            68999999999999999999998   7899999999999988875 887888888888999999999998765544  11


Q ss_pred             Hh-----------------------cCCcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           75 TS-----------------------KGGHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        75 ~~-----------------------~g~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      ..                       .+..++. .|  ..+.....+...+..+.  +++.++.++++|+.+|. ++++.+
T Consensus        83 ~~~~~~~vvs~~~gi~~~~l~~~~~~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~  159 (267)
T PRK11880         83 KGQLDKLVVSIAAGVTLARLERLLGADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDD  159 (267)
T ss_pred             HhhcCCEEEEecCCCCHHHHHHhcCCCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECC
Confidence            11                       1122222 11  11222233333333333  78888999999999996 566663


Q ss_pred             -CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhccCCcccCCCCCCC---cccchHH
Q 025163          129 -VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPA---FPLKHQQ  203 (257)
Q Consensus       129 -~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~---~~~~~~~  203 (257)
                       ...-...-+..+.. +....++..+...+.+.|++++...+++.... +......       ..+.++.   ..+....
T Consensus       160 e~~~d~~~a~~~~~p-a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~-------~~~~~~~~l~~~v~tpg  231 (267)
T PRK11880        160 EKQMDAVTAVSGSGP-AYVFLFIEALADAGVKLGLPREQARKLAAQTVLGAAKLLL-------ESGEHPAELRDNVTSPG  231 (267)
T ss_pred             hHhcchHHHHhcChH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-------hcCCCHHHHHHhCCCCc
Confidence             22211222222211 12223344444457779999998888776431 1111111       1111110   0011111


Q ss_pred             HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          204 KDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       204 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      .-....++..++.|++-.+.+++.+.++++.+.+
T Consensus       232 G~t~~gl~~l~~~g~~~~~~~a~~~~~~ra~~~~  265 (267)
T PRK11880        232 GTTIAALRVLEEKGLRAAVIEAVQAAAKRSKELG  265 (267)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence            2235678888889999999999999999988754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.74  E-value=3.2e-17  Score=138.02  Aligned_cols=150  Identities=17%  Similarity=0.274  Sum_probs=115.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..++..|.++|++|++||+++++.+++.+.|.. ...+..+.++++|+||+|+|.....+.       
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999998888753 233333567899999999997766543       


Q ss_pred             -------------------HHHhcCCcEEe-ccccCCcc-cc-------ccCcEEEEec---CChhhHHHHHHHHHHhcC
Q 025163           73 -------------------AITSKGGHFLE-APVSGSKQ-PA-------ETGQLVILSA---GEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------~~~~~g~~~~~-~pv~~~~~-~~-------~~~~~~~~~~---g~~~~~~~~~~~l~~~~~  121 (257)
                                         .+......|+. +|+++++. ..       ..+...+++.   ++++.++.++++++.+|.
T Consensus        81 l~~~~ii~d~~Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~  160 (279)
T PRK07417         81 LPPEAIVTDVGSVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGS  160 (279)
T ss_pred             CCCCcEEEeCcchHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCC
Confidence                               22223345776 78887652 22       2333333332   477888999999999999


Q ss_pred             CeEEeCCCChHHHHHHHHHHHHHHHHHHH
Q 025163          122 KAFFLGEVGNGAKMKLVVNMIMGCMMNTF  150 (257)
Q Consensus       122 ~~~~~g~~g~a~~~kl~~n~~~~~~~~~~  150 (257)
                      +++++++.++...+++++|....+...++
T Consensus       161 ~~v~~~~~~hD~~~a~~shlp~~~a~~l~  189 (279)
T PRK07417        161 KIYTADPEEHDRAVALISHLPVMVSAALI  189 (279)
T ss_pred             EEEEcCHHHHHHHHHHHcchHHHHHHHHH
Confidence            99999999999999999998766554443

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.73  E-value=3e-16  Score=132.68  Aligned_cols=167  Identities=17%  Similarity=0.255  Sum_probs=119.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------------CCcccCCHHHHhh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------------GATVGGSPAEVIK   55 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------------g~~~~~~~~~~~~   55 (257)
                      +||+|||+|.||..+|..|+.+|++|++||+++++++++.+.                         +++.+++++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            479999999999999999999999999999998876655321                         2345778888899


Q ss_pred             cCceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEe---c
Q 025163           56 KCTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILS---A  103 (257)
Q Consensus        56 ~~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~---~  103 (257)
                      ++|+||.|+|.......                          .+.   .+...|+..+.+.++   ....++.++   .
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~---~~~~lvevv~~~~  160 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLALHFANEI---WKNNTAEIMGHPG  160 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEEcCCCCC---CcCCeEEEeCCCC
Confidence            99999999998754433                          000   111223333332221   122344444   3


Q ss_pred             CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      .+++.++.+.++++.+|+.++.+..-..+....-+       ....++|++.++++.-.+++++..++..+.+.
T Consensus       161 t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi-------~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~  227 (287)
T PRK08293        161 TDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSL-------LVPFLSAALALWAKGVADPETIDKTWMIATGA  227 (287)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHH-------HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence            47889999999999999988888644555554433       34567799999888778999999998766443

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.72  E-value=7.3e-16  Score=129.99  Aligned_cols=167  Identities=16%  Similarity=0.166  Sum_probs=117.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHH-----------HHHCCC-------------cccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHGA-------------TVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~-----------l~~~g~-------------~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..||..|+.+||+|++||++++.+++           +.+.|.             +.++++ +.++++
T Consensus         7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~   85 (286)
T PRK07819          7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR   85 (286)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence            7999999999999999999999999999999998776           344442             256777 557899


Q ss_pred             ceEEEccCChHHHHH-------HHH-hcCCcEEe----------------------ccccCCccccccCcEEEEecCChh
Q 025163           58 TITIGMLADPAAALS-------AIT-SKGGHFLE----------------------APVSGSKQPAETGQLVILSAGEKA  107 (257)
Q Consensus        58 dvii~~v~~~~~~~~-------~~~-~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g~~~  107 (257)
                      |+||.|+|.+...+.       ... ..+..+.+                      .+.+.++....--.++...+++++
T Consensus        86 d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~  165 (286)
T PRK07819         86 QLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEA  165 (286)
T ss_pred             CEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHH
Confidence            999999999988776       111 12222222                      111211111111122233356899


Q ss_pred             hHHHHHHHHH-HhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          108 LYDEAISALN-VIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       108 ~~~~~~~~l~-~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      .++++.+++. .+++.++.+++ ..+....       .+....++|++.+.++.-.+++++..++..+.+.
T Consensus       166 ~~~~~~~~~~~~lgk~pv~v~d-~pGfi~n-------Ri~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~  228 (286)
T PRK07819        166 TVARAEEFASDVLGKQVVRAQD-RSGFVVN-------ALLVPYLLSAIRMVESGFATAEDIDKAMVLGCAH  228 (286)
T ss_pred             HHHHHHHHHHHhCCCCceEecC-CCChHHH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            9999999988 59999888876 3343322       2345677799999987777899999998766444

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.72  E-value=4.2e-16  Score=132.74  Aligned_cols=219  Identities=15%  Similarity=0.098  Sum_probs=142.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccC-----------CHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGG-----------SPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~-----------~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.||+.+|..|.+.|++|++++|..++++.+++. |+....           ...+.....|+||+||+..+
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~~   82 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAYD   82 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHHh
Confidence            899999999999999999999999999999988889888764 432211           11122346899999999887


Q ss_pred             HHHH-------------------------HHHhc-C-------CcEEeccccCCccccccCcEEEEecC-ChhhHHHHHH
Q 025163           69 AALS-------------------------AITSK-G-------GHFLEAPVSGSKQPAETGQLVILSAG-EKALYDEAIS  114 (257)
Q Consensus        69 ~~~~-------------------------~~~~~-g-------~~~~~~pv~~~~~~~~~~~~~~~~~g-~~~~~~~~~~  114 (257)
                      ..+.                         .+... +       +.++.+...++......+.-.+.+|. +.+..+++.+
T Consensus        83 ~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~~~l~~  162 (305)
T PRK05708         83 AEPAVASLAHRLAPGAELLLLQNGLGSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTAPAWLD  162 (305)
T ss_pred             HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcchHHHHH
Confidence            6654                         11111 1       11111111111111222222233332 3344577888


Q ss_pred             HHHHhcCCeEEeCCCChHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHcCCCH--HHHHHHHhhc
Q 025163          115 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC------------------MMNTFSEGLVLAEKSGLDP--RTLLDVLDLG  174 (257)
Q Consensus       115 ~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~------------------~~~~~~E~~~l~~~~g~~~--~~~~~~~~~~  174 (257)
                      +|...+..+.+..++....|.|++.|...+.                  +...+.|+..++++.|++.  +.+.+.+..-
T Consensus       163 ~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~~~~~  242 (305)
T PRK05708        163 DLREAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEEVQRV  242 (305)
T ss_pred             HHHhcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence            8888887777777799999999998876553                  2456788888899888752  2232222210


Q ss_pred             CCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          175 GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       175 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                            ...           .....+.|+.|+            +.+++.++++|+|+|..+.++++++....+
T Consensus       243 ------~~~-----------~~~~~sSM~qD~~~gR~tEid~i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~  299 (305)
T PRK05708        243 ------IQA-----------TAANYSSMYQDVRAGRRTEISYLLGYACRAADRHGLPLPRLQHLQQRLVAHLRA  299 (305)
T ss_pred             ------HHh-----------ccCCCcHHHHHHHcCCceeehhhhhHHHHHHHHcCCCCchHHHHHHHHHHHHHh
Confidence                  000           001123344443            779999999999999999999998876664

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=8.4e-16  Score=130.34  Aligned_cols=158  Identities=20%  Similarity=0.309  Sum_probs=112.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~   56 (257)
                      +||+|||+|.||..+|..|+++|++|++||+++++++.+.+           .|             ++.+++++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            47999999999999999999999999999999988776432           23             34556664 5789


Q ss_pred             CceEEEccCChHHHHH--------------------------HHHh--------cCCcEEe-ccccCCccccccCcEEEE
Q 025163           57 CTITIGMLADPAAALS--------------------------AITS--------KGGHFLE-APVSGSKQPAETGQLVIL  101 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~~--------~g~~~~~-~pv~~~~~~~~~~~~~~~  101 (257)
                      +|+||.|+|.....+.                          .+..        .|++|++ .|+.         .++.+
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~---------~~vei  154 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLASATDRPERFIGIHFMNPVPVM---------KLVEL  154 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEeeccCCcccC---------ceEEE
Confidence            9999999998755433                          1111        0222222 1111         11222


Q ss_pred             ---ecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          102 ---SAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       102 ---~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                         .+++++.++.+.++++.+|+.++++++.+    -++.++.+    ...+.|++.+.++.-.+++++..++..+.+
T Consensus       155 ~~g~~t~~~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~----~~~~~ea~~~~~~g~~~~~~iD~~~~~g~g  224 (292)
T PRK07530        155 IRGIATDEATFEAAKEFVTKLGKTITVAEDFP----AFIVNRIL----LPMINEAIYTLYEGVGSVEAIDTAMKLGAN  224 (292)
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence               24689999999999999999999888744    33444433    556789998888855689999988875544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.71  E-value=1.9e-15  Score=132.03  Aligned_cols=152  Identities=20%  Similarity=0.319  Sum_probs=122.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      ++|+||| +|.||..+|..|.++||+|++|||++.             .+++++++++|+||+|+|.....+.       
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~~~~~~~~~l~~l  165 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIHLTEEVIARLPPL  165 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHHHHHHHHHHHhCC
Confidence            5799998 999999999999999999999999631             3567788899999999998876554       


Q ss_pred             ------------------HHH-hcCCcEE-eccccCCccccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEeCCCCh
Q 025163           73 ------------------AIT-SKGGHFL-EAPVSGSKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGN  131 (257)
Q Consensus        73 ------------------~~~-~~g~~~~-~~pv~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~g~~g~  131 (257)
                                        .+. .....|+ .+|++|+......+...++.++ +++.++.++++++.+|.+++++++.++
T Consensus       166 ~~~~iv~Dv~SvK~~~~~~~~~~~~~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~H  245 (374)
T PRK11199        166 PEDCILVDLTSVKNAPLQAMLAAHSGPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEH  245 (374)
T ss_pred             CCCcEEEECCCccHHHHHHHHHhCCCCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHH
Confidence                              111 1223577 7999998777667776677766 567889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163          132 GAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD  169 (257)
Q Consensus       132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~  169 (257)
                      ...+++++.+   .++.++.++..+++ .+.+.+.+.+
T Consensus       246 D~~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~  279 (374)
T PRK11199        246 DQNMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA  279 (374)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence            9999999844   67777888888766 7777666543

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.71  E-value=5.4e-15  Score=125.79  Aligned_cols=168  Identities=14%  Similarity=0.165  Sum_probs=121.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC---------CcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG---------ATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g---------~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|||+|.||..+|..|+.+|++|++||++++..+++.+           .|         +...+++++++++||+|+
T Consensus         9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlVi   88 (321)
T PRK07066          9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQ   88 (321)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEE
Confidence            7999999999999999999999999999999886654322           22         355678889999999999


Q ss_pred             EccCChHHHHH-------HHHhcCC----------------------cEEeccccCCccccccCcEEEEecC---ChhhH
Q 025163           62 GMLADPAAALS-------AITSKGG----------------------HFLEAPVSGSKQPAETGQLVILSAG---EKALY  109 (257)
Q Consensus        62 ~~v~~~~~~~~-------~~~~~g~----------------------~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~  109 (257)
                      .|+|.....+.       .....+.                      .++..+.+-++...   .++-++.+   +++..
T Consensus        89 EavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~  165 (321)
T PRK07066         89 ESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARATHPERCVVGHPFNPVYLL---PLVEVLGGERTAPEAV  165 (321)
T ss_pred             ECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHHhcCCcccEEEEecCCccccC---ceEEEeCCCCCCHHHH
Confidence            99999887776       0111111                      22232222222211   33444443   68889


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP  179 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~  179 (257)
                      +.+.++++.+|++++.+..--.+....       -+...++.|++.+.++...+++++..++..+.+..|
T Consensus       166 ~~~~~f~~~lGk~pV~v~kd~pGFi~N-------Rl~~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~  228 (321)
T PRK07066        166 DAAMGIYRALGMRPLHVRKEVPGFIAD-------RLLEALWREALHLVNEGVATTGEIDDAIRFGAGIRW  228 (321)
T ss_pred             HHHHHHHHHcCCEeEecCCCCccHHHH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence            999999999998888885324444432       234567889999999988999999999988766654

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.70  E-value=3.5e-15  Score=132.68  Aligned_cols=167  Identities=21%  Similarity=0.290  Sum_probs=123.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALS------   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------   72 (257)
                      |||+||| +|.||..++..|.++|++|++|+|++++.+++. +.|+....++.+++.++|+||+|+|.......      
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl~~l~~   80 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVIKEVAP   80 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            8999997 899999999999999999999999988865554 45777777888889999999999998655433      


Q ss_pred             --------------------HHH---hcCCcEEec-cccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEE
Q 025163           73 --------------------AIT---SKGGHFLEA-PVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 --------------------~~~---~~g~~~~~~-pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                          .+.   ..+..|+.+ |++|+......+...++.++   +++.++.++++|+.+|.++++
T Consensus        81 ~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~  160 (437)
T PRK08655         81 HVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIV  160 (437)
T ss_pred             hCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence                                111   235678875 88887666667776666654   577889999999999999888


Q ss_pred             eCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163          126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL  171 (257)
Q Consensus       126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~  171 (257)
                      +++..+.   ++..+.....+..++..+..+ .+.|++.+....+.
T Consensus       161 ~~~e~HD---~~~a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a  202 (437)
T PRK08655        161 TSPEEHD---RIMSVVQGLTHFAYISIASTL-KRLGVDIKESRKFA  202 (437)
T ss_pred             CCHHHHH---HHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhc
Confidence            8765444   334444444555555555544 66788877655443

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.70  E-value=1.7e-15  Score=126.65  Aligned_cols=223  Identities=14%  Similarity=0.167  Sum_probs=142.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|+||.+|+..|.++|+    +|++|||++++++.+.+ .|+....+..++++++|+||+|||+....+.  .
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~   82 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ   82 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence            689999999999999999999885    69999999999998875 6887788888999999999999997544443  1


Q ss_pred             HH---hcCCcEEe-----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEE
Q 025163           74 IT---SKGGHFLE-----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        74 ~~---~~g~~~~~-----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~  125 (257)
                      +.   ..+..+++                       +|..  +.....+...+..+.  +++..+.++.+|+.+|. ++.
T Consensus        83 l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~--~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~  159 (272)
T PRK12491         83 IKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNT--PVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQ-TEV  159 (272)
T ss_pred             HHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCCh--HHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCC-EEE
Confidence            11   11222333                       1211  223333433333322  34566789999999996 456


Q ss_pred             eCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--CC-cccCCCCCCCccc
Q 025163          126 LGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--GP-TMLQSNYAPAFPL  199 (257)
Q Consensus       126 ~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~~-~~~~~~~~~~~~~  199 (257)
                      +.+  ......+-=+...+.+.++.++.++   +.+.|+++++..+++.... +...++...  .+ .+.+.-.+|+-+ 
T Consensus       160 ~~E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p~~l~~~V~sPGGt-  235 (272)
T PRK12491        160 VNEKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHPGELKDMVCSPGGT-  235 (272)
T ss_pred             EcHHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCchH-
Confidence            654  2222222222334555555566565   7788999999888877542 222222111  01 111222233322 


Q ss_pred             chHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          200 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       200 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                            ....++..++.|+.--+.+++....+++.+.
T Consensus       236 ------T~~gl~~le~~~~~~~~~~av~aa~~r~~el  266 (272)
T PRK12491        236 ------TIEAVATLEEKGLRTAIISAMKRCTQKSMEM  266 (272)
T ss_pred             ------HHHHHHHHHHCChHHHHHHHHHHHHHHHHHH
Confidence                  2345677778888888888888888877663

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.69  E-value=1.8e-15  Score=126.13  Aligned_cols=164  Identities=14%  Similarity=0.193  Sum_probs=109.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|+||.++++.|.+.|++   +.+|+|++++.+.+.+.  +.....++.++++++|+||+|||+....+.  .
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   80 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEVLRA   80 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            8999999999999999999998864   58899999999888775  567778899999999999999996443332  0


Q ss_pred             HH-hcC-----------------------CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCC
Q 025163           74 IT-SKG-----------------------GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV  129 (257)
Q Consensus        74 ~~-~~g-----------------------~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~  129 (257)
                      +. ..+                       ..+..+|+.  +.....+. ..+.+++    +.++++|+.+|..+. +++.
T Consensus        81 l~~~~~~~vis~~ag~~~~~l~~~~~~~~~~~r~~P~~--~~a~~~g~-t~~~~~~----~~~~~l~~~lG~~~~-~~~e  152 (258)
T PRK06476         81 LRFRPGQTVISVIAATDRAALLEWIGHDVKLVRAIPLP--FVAERKGV-TAIYPPD----PFVAALFDALGTAVE-CDSE  152 (258)
T ss_pred             hccCCCCEEEEECCCCCHHHHHHHhCCCCCEEEECCCC--hhhhCCCC-eEecCCH----HHHHHHHHhcCCcEE-ECCh
Confidence            10 012                       223334432  11112222 2333332    579999999997654 5432


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL  173 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~  173 (257)
                      ..-..+-.+. ...+....++.++...+++.|++++...+++..
T Consensus       153 ~~~d~~~a~~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~  195 (258)
T PRK06476        153 EEYDLLAAAS-ALMATYFGILETATGWLEEQGLKRQKARAYLAP  195 (258)
T ss_pred             Hhccceeehh-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            1111111111 133334457888889999999999998888774

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.69  E-value=1.5e-15  Score=128.82  Aligned_cols=224  Identities=17%  Similarity=0.201  Sum_probs=149.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc------------CCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------------GSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~------------~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|+|+|.||+.++..|.++|++|+++.|++. ++++++.|+...            ....+....+|+||++|++.+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa~q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKAYQ   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecccc
Confidence            8999999999999999999999999999999755 899988764321            122344458999999999988


Q ss_pred             HHHH-------------------------HHHhc--------CCcEEeccccCCcc--ccccCcEE--EEecCChhhHHH
Q 025163           69 AALS-------------------------AITSK--------GGHFLEAPVSGSKQ--PAETGQLV--ILSAGEKALYDE  111 (257)
Q Consensus        69 ~~~~-------------------------~~~~~--------g~~~~~~pv~~~~~--~~~~~~~~--~~~~g~~~~~~~  111 (257)
                      ..+.                         .+...        |+....+--.++..  ....|.+.  ...+++++..+.
T Consensus        80 ~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~  159 (307)
T COG1893          80 LEEALPSLAPLLGPNTVVLFLQNGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKA  159 (307)
T ss_pred             HHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHH
Confidence            7766                         11111        11111111111111  11122222  122345577889


Q ss_pred             HHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcC--CCHHHHH
Q 025163          112 AISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSG--LDPRTLL  168 (257)
Q Consensus       112 ~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~---------------------~~~~~E~~~l~~~~g--~~~~~~~  168 (257)
                      +.+.|+..+.++.+..++-...|.|++.|...+..                     ...+.|...++.+.|  ++.+.+.
T Consensus       160 i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~  239 (307)
T COG1893         160 LAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVE  239 (307)
T ss_pred             HHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHH
Confidence            99999999999888888999999999999877733                     458889999999988  4443333


Q ss_pred             ---HHHhhc--CCCchhhhcc-CCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          169 ---DVLDLG--GIANPMFKGK-GPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       169 ---~~~~~~--~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                         ..+...  ...|++.+.. ..+...-|+.           .+.+++.++++|+++|..+.++++++.....
T Consensus       240 ~v~~~~~~~~~~~~sSM~qDl~~gr~tEid~i-----------~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~~  302 (307)
T COG1893         240 RVLAVIRATDAENYSSMLQDLEKGRPTEIDAI-----------NGAVVRLAKKHGLATPVNDTLYALLKAKEAE  302 (307)
T ss_pred             HHHHHHHhcccccCchHHHHHHcCCcccHHHH-----------hhHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence               333333  2333333221 1122222222           2668999999999999999999999977553

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.67  E-value=4.2e-15  Score=126.25  Aligned_cols=159  Identities=19%  Similarity=0.262  Sum_probs=113.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHH-----------HHHCC------------CcccCCHHHHhhcCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG------------ATVGGSPAEVIKKCT   58 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~-----------l~~~g------------~~~~~~~~~~~~~~d   58 (257)
                      ||+|||+|.||..||..|+++|++|++||+++++++.           +.+.|            .....+..+++++||
T Consensus         6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD   85 (295)
T PLN02545          6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDAD   85 (295)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCC
Confidence            6999999999999999999999999999999988753           33333            122233346789999


Q ss_pred             eEEEccCChHHHHH--------------------------HHHh--------cCCcEEeccccCCccccccCcEEEEec-
Q 025163           59 ITIGMLADPAAALS--------------------------AITS--------KGGHFLEAPVSGSKQPAETGQLVILSA-  103 (257)
Q Consensus        59 vii~~v~~~~~~~~--------------------------~~~~--------~g~~~~~~pv~~~~~~~~~~~~~~~~~-  103 (257)
                      +||.|||.+...+.                          .+..        .+++|++.|..        ..++.++. 
T Consensus        86 ~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~--------~~lveiv~g  157 (295)
T PLN02545         86 FIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPI--------MKLVEIIRG  157 (295)
T ss_pred             EEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCccc--------CceEEEeCC
Confidence            99999997777655                          0000        12222222221        23345554 


Q ss_pred             --CChhhHHHHHHHHHHhcCCeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          104 --GEKALYDEAISALNVIGKKAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       104 --g~~~~~~~~~~~l~~~~~~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                        ++++.++.++++++.+|..++++++ .|  .   +.+.    ++...++|++.+.++...+++++..++..+.+.
T Consensus       158 ~~t~~e~~~~~~~ll~~lG~~~~~~~d~~g--~---i~nr----i~~~~~~ea~~~~~~gv~~~~~iD~~~~~g~g~  225 (295)
T PLN02545        158 ADTSDEVFDATKALAERFGKTVVCSQDYPG--F---IVNR----ILMPMINEAFYALYTGVASKEDIDTGMKLGTNH  225 (295)
T ss_pred             CCCCHHHHHHHHHHHHHcCCeeEEecCccc--H---HHHH----HHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCC
Confidence              4788999999999999999988877 33  2   2222    335568899999988878899999888765443

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.67  E-value=3.5e-15  Score=126.48  Aligned_cols=158  Identities=16%  Similarity=0.243  Sum_probs=112.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH--------------CCC-------------cccCCHHHHh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~--------------~g~-------------~~~~~~~~~~   54 (257)
                      ||+|||+|.||..+|..|+.+|++|++||+++++++...+              .|.             ...++. +++
T Consensus         5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~   83 (291)
T PRK06035          5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL   83 (291)
T ss_pred             EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence            7999999999999999999999999999999988764321              121             234445 567


Q ss_pred             hcCceEEEccCChHHHHH----HHHh---c---------------------------CCcEEe-ccccCCccccccCcEE
Q 025163           55 KKCTITIGMLADPAAALS----AITS---K---------------------------GGHFLE-APVSGSKQPAETGQLV   99 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~----~~~~---~---------------------------g~~~~~-~pv~~~~~~~~~~~~~   99 (257)
                      +++|+||.|+|.+...+.    .+..   .                           |.+|++ +|+.+         ++
T Consensus        84 ~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~---------~v  154 (291)
T PRK06035         84 SDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIATALERKDRFIGMHWFNPAPVMK---------LI  154 (291)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCc---------cE
Confidence            899999999998865443    0110   1                           122222 11111         11


Q ss_pred             EEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          100 ILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       100 ~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      -+..   .+++.++.+.++++.+|+.++++++.+.....|+..|        .++|++.+.++.-.+++++..++..+.+
T Consensus       155 Ev~~g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~--------~~~ea~~~~~~g~a~~~~iD~~~~~~~g  226 (291)
T PRK06035        155 EVVRAALTSEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEG--------WLLEAIRSFEIGIATIKDIDEMCKLAFG  226 (291)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHH--------HHHHHHHHHHcCCCCHHHHHHHHhhcCC
Confidence            2222   2688999999999999999999988777777777666        4568888887754689999998876544


Q ss_pred             C
Q 025163          177 A  177 (257)
Q Consensus       177 ~  177 (257)
                      .
T Consensus       227 ~  227 (291)
T PRK06035        227 F  227 (291)
T ss_pred             C
Confidence            3

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.67  E-value=6.5e-15  Score=121.18  Aligned_cols=224  Identities=18%  Similarity=0.213  Sum_probs=141.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|+||.+|+..|.++|    .+|++.+|++++.+.+.+ .|+..+++..++++.+|+||+||++....+.  .
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~~~vl~~   81 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDLEEVLSK   81 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhHHHHHHH
Confidence            68999999999999999999999    689999999999975554 5776677888999999999999998766555  2


Q ss_pred             HHh--cCCcEEe----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeC
Q 025163           74 ITS--KGGHFLE----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        74 ~~~--~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                      ++.  .+-.+++                      +|.+  +.....+...+..+.  +++..+.+.++|+.+|. ++.+.
T Consensus        82 l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt--~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~  158 (266)
T COG0345          82 LKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNT--PALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVE  158 (266)
T ss_pred             hhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCCh--HHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEec
Confidence            221  1212222                      2221  223333443333332  56777789999999995 56776


Q ss_pred             CCChHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhccCC---cccCCCCCCCcccch
Q 025163          128 EVGNGAKMK--LVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGKGP---TMLQSNYAPAFPLKH  201 (257)
Q Consensus       128 ~~g~a~~~k--l~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~~~---~~~~~~~~~~~~~~~  201 (257)
                      +.--..+.-  =....+.+.++.++.++   +.+.|++++...+++.... +...++.....   .+...-.+|+-+.. 
T Consensus       159 E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~~Lr~~VtSPGGtTi-  234 (266)
T COG0345         159 ESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPAELRDQVTSPGGTTI-  234 (266)
T ss_pred             hHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCcCCCchHH-
Confidence            522222222  22334555555555555   7889999999988877541 22222222111   11222234443322 


Q ss_pred             HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          202 QQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       202 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                            ..++..++.|+..-+.+++...++++.+-|
T Consensus       235 ------agl~~le~~g~~~~v~~av~aa~~r~~el~  264 (266)
T COG0345         235 ------AGLRVLEEDGFRGAVIEAVEAAYKRSEELG  264 (266)
T ss_pred             ------HHHHHHHHhChHHHHHHHHHHHHHHHHHhc
Confidence                  234555577888888888888777776643

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.65  E-value=1.7e-14  Score=121.73  Aligned_cols=164  Identities=16%  Similarity=0.200  Sum_probs=112.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-----------HHHHCC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----------~l~~~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..+|..|+++|++|++||+++++++           .+.+.|             ++.+++.+ .++++
T Consensus         5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a   83 (282)
T PRK05808          5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA   83 (282)
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence            699999999999999999999999999999999875           334444             23355665 47899


Q ss_pred             ceEEEccCChHHHHH----HHH-------------------------hcCCcEEeccccCCccccccCcEEEEe---cCC
Q 025163           58 TITIGMLADPAAALS----AIT-------------------------SKGGHFLEAPVSGSKQPAETGQLVILS---AGE  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~----~~~-------------------------~~g~~~~~~pv~~~~~~~~~~~~~~~~---~g~  105 (257)
                      |+||+|+|.+...+.    .+.                         .+.-.++....+.+...   ..+..++   +.+
T Consensus        84 DlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~---~~~vev~~g~~t~  160 (282)
T PRK05808         84 DLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAAATKRPDKVIGMHFFNPVPV---MKLVEIIRGLATS  160 (282)
T ss_pred             CeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhhCCCcceEEeeccCCccc---CccEEEeCCCCCC
Confidence            999999997666443    010                         11112333222211111   1112233   347


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      ++.++.+.++++.+|+.++++++ ..+...       ..++...++|+..+.++.-.+++++..++..+.++
T Consensus       161 ~e~~~~~~~l~~~lGk~pv~~~d-~~g~i~-------~Ri~~~~~~ea~~~~~~gv~~~~diD~~~~~g~g~  224 (282)
T PRK05808        161 DATHEAVEALAKKIGKTPVEVKN-APGFVV-------NRILIPMINEAIFVLAEGVATAEDIDEGMKLGCNH  224 (282)
T ss_pred             HHHHHHHHHHHHHcCCeeEEecC-ccChHH-------HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            89999999999999999999976 333332       23445677899999988767899999988765443

>PRK07680 late competence protein ComER; Validated

Probab=99.62  E-value=4e-14  Score=118.92  Aligned_cols=170  Identities=15%  Similarity=0.222  Sum_probs=111.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||.+++..|.++|+    +|.+|+|++++.+.+.+.  |+....++.++++++|+||+|||+....+.  
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~   80 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQ   80 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHH
Confidence            899999999999999999999984    799999999998888764  677788888988999999999997764443  


Q ss_pred             HHHh---cCCcEEecc--cc-----------------CCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 AITS---KGGHFLEAP--VS-----------------GSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 ~~~~---~g~~~~~~p--v~-----------------~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      .+..   .+..+++..  +.                 ..+.....|...+..+  .+.+.++.++++|+.+|. ++++.+
T Consensus        81 ~l~~~l~~~~~iis~~ag~~~~~L~~~~~~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e  159 (273)
T PRK07680         81 KLAPHLTDEHCLVSITSPISVEQLETLVPCQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEE  159 (273)
T ss_pred             HHHhhcCCCCEEEEECCCCCHHHHHHHcCCCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEECh
Confidence            1111   122233211  10                 0112233455544444  355677899999999994 566655


Q ss_pred             -CChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163          129 -VGNGAK-MKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL  173 (257)
Q Consensus       129 -~g~a~~-~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~  173 (257)
                       ...... +--+...+.+..+.++.++.  .++.|+++++..+++..
T Consensus       160 ~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~  204 (273)
T PRK07680        160 DITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASE  204 (273)
T ss_pred             HhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHH
Confidence             222211 11112234444455555543  34489999988877664

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.57  E-value=1.7e-12  Score=110.91  Aligned_cols=142  Identities=18%  Similarity=0.296  Sum_probs=104.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~----   72 (257)
                      |||+|||+|.||..++..|.+.|+  +|++|||++++.+.+.+.|.  ....++.++++++|+||+|+|.......    
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~l   86 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAEI   86 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence            589999999999999999999985  89999999999888888775  3456777888999999999998654322    


Q ss_pred             ----------------------HHH---hcCCcEEec-cccCCcc-cc-------ccCcEEEEe---cCChhhHHHHHHH
Q 025163           73 ----------------------AIT---SKGGHFLEA-PVSGSKQ-PA-------ETGQLVILS---AGEKALYDEAISA  115 (257)
Q Consensus        73 ----------------------~~~---~~g~~~~~~-pv~~~~~-~~-------~~~~~~~~~---~g~~~~~~~~~~~  115 (257)
                                            .+.   ..++.|+.+ |+.++.. ..       ..+...++.   +++++.++.++++
T Consensus        87 ~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l  166 (307)
T PRK07502         87 APHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAF  166 (307)
T ss_pred             HhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHH
Confidence                                  111   134567775 7776432 11       123323333   4578889999999


Q ss_pred             HHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163          116 LNVIGKKAFFLGEVGNGAKMKLVVNMI  142 (257)
Q Consensus       116 l~~~~~~~~~~g~~g~a~~~kl~~n~~  142 (257)
                      ++.+|.+++++++..+...+-++....
T Consensus       167 ~~~lG~~~~~~~~~~hD~~~A~~s~lp  193 (307)
T PRK07502        167 WRALGARVEEMDPEHHDLVLAITSHLP  193 (307)
T ss_pred             HHHcCCEEEEcCHHHHhHHHHHHhhHH
Confidence            999999988888766666655555543

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.55  E-value=4.4e-13  Score=116.75  Aligned_cols=165  Identities=16%  Similarity=0.151  Sum_probs=113.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc----ccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----VGGSPAEVIKKCTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~----~~~~~~~~~~~~dvii~~v~~~~~~~~----   72 (257)
                      +||+|||+|.||..++..|.++|++|.+|++++++.+.....+..    ..+++.++++++|+||+|||.....+.    
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l   80 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL   80 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence            489999999999999999999999999999988776555444432    235677888999999999998755433    


Q ss_pred             -----------------------HHH---hcCCcEEe-ccccCCcc--------ccccCcEEEEec---CChhhHHHHHH
Q 025163           73 -----------------------AIT---SKGGHFLE-APVSGSKQ--------PAETGQLVILSA---GEKALYDEAIS  114 (257)
Q Consensus        73 -----------------------~~~---~~g~~~~~-~pv~~~~~--------~~~~~~~~~~~~---g~~~~~~~~~~  114 (257)
                                             .+.   ..+..|+. .|+.++..        ....+...++..   .+++.++.+++
T Consensus        81 ~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~  160 (359)
T PRK06545         81 ADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKD  160 (359)
T ss_pred             hhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHH
Confidence                                   111   13456777 67776531        223444344444   46788999999


Q ss_pred             HHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          115 ALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       115 ~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +++.+|..++++.+..+...+.++......+.     +++  +...+.+.+....+..
T Consensus       161 l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia-----~al--~~~~~~~~~~~~~la~  211 (359)
T PRK06545        161 LLSGTGAKFVVLDAEEHDRAVALVSHLPHILA-----SSL--AARLAGEHPLALRLAA  211 (359)
T ss_pred             HHHHcCCEEEECCHHHHhHHHhHhccHHHHHH-----HHH--HHhhccCchHHHhhhc
Confidence            99999998888887677777776665543322     222  4444555554444443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.54  E-value=3e-13  Score=111.82  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=107.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcC-CchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNR-TLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r-~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||.+++..|.++|+    ++++++| ++++.+.+.+. ++....+++++++++|+||+|+|+....+.  
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~~~v~~   84 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAHEELLA   84 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHHHHHHH
Confidence            579999999999999999998873    3777887 46788888764 777778888999999999999998866554  


Q ss_pred             HHHh--cCCcEEe-----------------------ccccCCccccccCcEE--EEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 AITS--KGGHFLE-----------------------APVSGSKQPAETGQLV--ILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 ~~~~--~g~~~~~-----------------------~pv~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                      .+..  .+-.+++                       +|.+..  ....+...  .....+++..+.++++|+.+|..+ +
T Consensus        85 ~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~-~  161 (245)
T PRK07634         85 ELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLILKGIGTSQ-L  161 (245)
T ss_pred             HHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEE-E
Confidence            1111  1111222                       222211  12222211  222357788899999999999765 4


Q ss_pred             eCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh
Q 025163          126 LGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL  173 (257)
Q Consensus       126 ~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~  173 (257)
                      +.+  ......+--....+.+.++..+.+   .+.+.|+++++..+++..
T Consensus       162 ~~e~~~~~~~a~~gs~pa~~~~~~~a~~~---~~~~~Gl~~~~a~~~~~~  208 (245)
T PRK07634        162 CTEEEVHQLTAVTGSAPAFLYYFAESLIE---ATKSYGVDEETAKHLVIQ  208 (245)
T ss_pred             ECHHHcchHHhhhcchHHHHHHHHHHHHH---HHHHcCCCHHHHHHHHHH
Confidence            544  222222222222233333444444   488899999988887764

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.52  E-value=3.7e-14  Score=109.28  Aligned_cols=71  Identities=23%  Similarity=0.356  Sum_probs=60.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||+|||+|+||+++|..|+++||+|++|.|+++.++.+++.+              +..++|++++++++|+|+++||+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            799999999999999999999999999999999999887632              345778999999999999999998


Q ss_pred             HHHHH
Q 025163           68 AAALS   72 (257)
Q Consensus        68 ~~~~~   72 (257)
                      ...+.
T Consensus        81 ~~~~~   85 (157)
T PF01210_consen   81 AHREV   85 (157)
T ss_dssp             GHHHH
T ss_pred             HHHHH
Confidence            77554

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.49  E-value=3.5e-12  Score=106.30  Aligned_cols=217  Identities=16%  Similarity=0.177  Sum_probs=131.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|+||.+++..|.+++    .++++++|++++.      +.....++.++++++|+||+|||+......  .+
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp~~~~~vl~~i   77 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKPDLAGKVLLEI   77 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCHHHHHHHHHHH
Confidence            79999999999999999999987    2599999987652      344566888888999999999997765444  11


Q ss_pred             Hh--cCCcEEe-----------------------ccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeC
Q 025163           75 TS--KGGHFLE-----------------------APVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        75 ~~--~g~~~~~-----------------------~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                      ..  .+-.+++                       .|.  .+.....+...+..+  .+++..+.++++|+.+|. ++.+.
T Consensus        78 ~~~l~~~~iIS~~aGi~~~~l~~~~~~~~~vvr~mPn--~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v~  154 (260)
T PTZ00431         78 KPYLGSKLLISICGGLNLKTLEEMVGVEAKIVRVMPN--TPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGI-IQEIK  154 (260)
T ss_pred             HhhccCCEEEEEeCCccHHHHHHHcCCCCeEEEECCC--chhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCc-EEEEC
Confidence            10  0001111                       111  122223333222222  145667899999999996 45554


Q ss_pred             C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--CC-cccCCCCCCCcccch
Q 025163          128 E--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--GP-TMLQSNYAPAFPLKH  201 (257)
Q Consensus       128 ~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~~-~~~~~~~~~~~~~~~  201 (257)
                      +  ......+--....+.+.++.++.++   +.+.|++.++..+++.... +...++...  .+ .+.+.-.+|+-+   
T Consensus       155 E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~~~l~~~v~spgG~---  228 (260)
T PTZ00431        155 EKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPVQQLKDDVCSPGGI---  228 (260)
T ss_pred             hHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChH---
Confidence            4  2222222222344555556666555   7889999999988877541 222222211  11 122222334322   


Q ss_pred             HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          202 QQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       202 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                          ....++..++.|+.--+.+++....+++.+.
T Consensus       229 ----T~~gl~~le~~g~~~~~~~a~~aa~~r~~~l  259 (260)
T PTZ00431        229 ----TIVGLYTLEKHAFKYTVMDAVESACQKSKSM  259 (260)
T ss_pred             ----HHHHHHHHHHCChHHHHHHHHHHHHHHHHhc
Confidence                1335666777888888888888777776553

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.48  E-value=3.1e-12  Score=107.39  Aligned_cols=224  Identities=17%  Similarity=0.196  Sum_probs=146.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~   56 (257)
                      +||+|||+|.||..+|..++..|++|+++|++++.+++..           +.|             ++..+++. .+++
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~   82 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD   82 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence            5899999999999999999998899999999977654432           222             23344444 6789


Q ss_pred             CceEEEccCChHHHHH-----------------------------HHHhcCCcEEeccccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS-----------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~-----------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---  104 (257)
                      ||+||-+++....++.                             ....+.-.++..+.+.++.--   .++-++.|   
T Consensus        83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~~~rper~iG~HFfNP~~~m---~LVEvI~g~~T  159 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEALKRPERFIGLHFFNPVPLM---PLVEVIRGEKT  159 (307)
T ss_pred             CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHHhCCchhEEEEeccCCCCcc---eeEEEecCCCC
Confidence            9999999999888776                             111222335555545444322   34445555   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhcc
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGK  184 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~  184 (257)
                      +++.++.+.++.+.+++.++...+ -.+....-       +....+.|+..+..+...+++++..+++.+.+..     .
T Consensus       160 ~~e~~~~~~~~~~~igK~~vv~~D-~pGFi~NR-------il~~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p-----m  226 (307)
T COG1250         160 SDETVERVVEFAKKIGKTPVVVKD-VPGFIVNR-------LLAALLNEAIRLLEEGVATPEEIDAAMRQGLGLP-----M  226 (307)
T ss_pred             CHHHHHHHHHHHHHcCCCCEeecC-CCceehHh-------HHHHHHHHHHHHHHhCCCCHHHHHHHHHhccCCC-----c
Confidence            578899999999999976644444 44444322       3346677999999998899999999999865553     1


Q ss_pred             CCcccCCCCCCCcccchHHHHHHHHHHHHh--hcCCCchHHHHHHHHHHHHHHcCCCCCcHHH
Q 025163          185 GPTMLQSNYAPAFPLKHQQKDMRLALALGD--ENAVSMPIAAAANEAFKKARSLGLGDNDFSA  245 (257)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~--~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~  245 (257)
                      +|..+ .|+.+   ++.+++-++.+.+...  ..-.+.|+++...+.-+.+.+.|.|..||..
T Consensus       227 Gpf~l-~D~~G---lD~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~Ksg~GfY~y~~  285 (307)
T COG1250         227 GPFEL-ADLIG---LDVMLHIMKVLNETLGDDPYYRPPPLLRKLVEAGRLGRKSGKGFYDYRG  285 (307)
T ss_pred             cHHHH-HHHHh---HHHHHHHHHHHHHhcCCCccccccHHHHHHHhcccccccCCCcceeccc
Confidence            11111 12211   3334443344443222  1223457777777777777888888888874

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.48  E-value=4.4e-12  Score=107.88  Aligned_cols=165  Identities=22%  Similarity=0.224  Sum_probs=107.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHH---HHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSA---ITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~---~~~   76 (257)
                      ++|+|||+|+||.++|.+|.+.|++|++++++.++.. ...+.|.... ++.++++.+|+|+++||+.......   +.+
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~   96 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQAEVYEEEIEP   96 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHHHHHHHHHHHh
Confidence            4799999999999999999999999999888755443 3345577655 8999999999999999987663321   111


Q ss_pred             ---cCCcE----------Ee------------ccccCCcc-----ccccCcEEEE-ecCC--hhhHHHHHHHHHHhcCCe
Q 025163           77 ---KGGHF----------LE------------APVSGSKQ-----PAETGQLVIL-SAGE--KALYDEAISALNVIGKKA  123 (257)
Q Consensus        77 ---~g~~~----------~~------------~pv~~~~~-----~~~~~~~~~~-~~g~--~~~~~~~~~~l~~~~~~~  123 (257)
                         .|..+          ..            +|-..+..     ....|...++ +..|  .+..+.+..+++.+|...
T Consensus        97 ~Lk~g~iL~~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~  176 (330)
T PRK05479         97 NLKEGAALAFAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTR  176 (330)
T ss_pred             cCCCCCEEEECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCc
Confidence               12111          11            12111110     0223333344 4555  778889999999999774


Q ss_pred             E-----EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025163          124 F-----FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL  167 (257)
Q Consensus       124 ~-----~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~  167 (257)
                      .     .+.+...--+..- +..+.+....++..++..+...|.+|+..
T Consensus       177 ~g~~~ttf~~e~~~dl~ge-q~vl~gg~~~l~~~~~e~l~eaG~~pe~A  224 (330)
T PRK05479        177 AGVIETTFKEETETDLFGE-QAVLCGGLTELIKAGFETLVEAGYQPEMA  224 (330)
T ss_pred             cceeeeeecccccccchhh-HHHHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence            3     2222110111111 44566677788888899999999998643

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.48  E-value=9.6e-13  Score=106.99  Aligned_cols=138  Identities=22%  Similarity=0.346  Sum_probs=94.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------CCc---ccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------g~~---~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+||| +|+||++++..|+++||+|++|+|++++.+.+.+.        |..   ...+..++++++|+||+|||...
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            8999997 89999999999999999999999999988777542        221   23466788899999999999886


Q ss_pred             HHHH--HHHh--cCCcEEe--ccccC--------------------------------C----------ccccccCcEEE
Q 025163           69 AALS--AITS--KGGHFLE--APVSG--------------------------------S----------KQPAETGQLVI  100 (257)
Q Consensus        69 ~~~~--~~~~--~g~~~~~--~pv~~--------------------------------~----------~~~~~~~~~~~  100 (257)
                      ..+.  .+..  .+..+++  +|+.-                                .          ......+.-.+
T Consensus        81 ~~~~l~~l~~~l~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~~~  160 (219)
T TIGR01915        81 VLKTLESLRDELSGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCDVL  160 (219)
T ss_pred             HHHHHHHHHHhccCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCCEE
Confidence            6554  1111  1111222  11110                                0          00011122234


Q ss_pred             EecCChhhHHHHHHHHHHh-cCCeEEeCCCChHHHHHHH
Q 025163          101 LSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLV  138 (257)
Q Consensus       101 ~~~g~~~~~~~~~~~l~~~-~~~~~~~g~~g~a~~~kl~  138 (257)
                      +.|.|+++.+.+.++.+.+ |..++.+|.+..+..+.-.
T Consensus       161 v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e~~  199 (219)
T TIGR01915       161 VCGDDEEAKEVVAELAGRIDGLRALDAGPLENAAIVESL  199 (219)
T ss_pred             EECCCHHHHHHHHHHHHhcCCCCcccCCchhhHHHHHhH
Confidence            5555677788899999999 9999999987776665543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.47  E-value=8.1e-12  Score=104.31  Aligned_cols=143  Identities=21%  Similarity=0.272  Sum_probs=103.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCcc--cCCH-HHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATV--GGSP-AEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~--~~~~-~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      |+|+|+|+|.||..+++.|.++|+.|.+++++.+  ..+.-.+.|+.-  ..+. .+....+|+||+|||-....+.   
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~~   83 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLKE   83 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHHH
Confidence            6899999999999999999999999877766554  444444455532  2333 5677789999999998776655   


Q ss_pred             -----------------------HHHhcC---CcEEe-ccccCC--ccccccCcEEEEecC---ChhhHHHHHHHHHHhc
Q 025163           73 -----------------------AITSKG---GHFLE-APVSGS--KQPAETGQLVILSAG---EKALYDEAISALNVIG  120 (257)
Q Consensus        73 -----------------------~~~~~g---~~~~~-~pv~~~--~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~  120 (257)
                                             .+....   ..|+. .|++|+  ......++..++...   +.+.++++.++++.+|
T Consensus        84 l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~g  163 (279)
T COG0287          84 LAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALG  163 (279)
T ss_pred             hcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence                                   222222   25666 788888  556666666565544   3567889999999999


Q ss_pred             CCeEEeCCCChHHHHHHHHHHHH
Q 025163          121 KKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus       121 ~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      .+++++....+-..+-.++.+.-
T Consensus       164 a~~v~~~~eeHD~~~a~vshLpH  186 (279)
T COG0287         164 ARLVEMDAEEHDRVMAAVSHLPH  186 (279)
T ss_pred             CEEEEcChHHHhHHHHHHHHHHH
Confidence            99988888777777766665543

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.46  E-value=4.2e-12  Score=108.35  Aligned_cols=217  Identities=18%  Similarity=0.141  Sum_probs=133.1

Q ss_pred             hHHHHHHHHHHCCCeEEEEcCCchh-------HHH-----------HHHCC-------------CcccCC--HHHHhhcC
Q 025163           11 MGKAISMNLLRNGFKVTVWNRTLSK-------CDE-----------LVAHG-------------ATVGGS--PAEVIKKC   57 (257)
Q Consensus        11 mG~~la~~L~~~g~~V~~~~r~~~~-------~~~-----------l~~~g-------------~~~~~~--~~~~~~~~   57 (257)
                      ||..||..++.+|++|++||++++.       +++           +.+.|             ++...+  +.++++++
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            8999999999999999999999853       111           12222             233333  66888999


Q ss_pred             ceEEEccCChHHHHH--------------------------HHHh---cCCcEEeccccCCccccccCcEEEEe---cCC
Q 025163           58 TITIGMLADPAAALS--------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILS---AGE  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~---~g~  105 (257)
                      |+||.|||.+...+.                          .+..   +.-.++..+.+.++...   .++-++   +++
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~---~lvEVv~g~~t~  157 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLM---PLVEVSPSDATD  157 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHhhcCCcccEEEEecCCccccC---ceEEEeCCCCCC
Confidence            999999999988877                          1111   00012222222222111   222233   347


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccC
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG  185 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~  185 (257)
                      ++.++++.++++.+|+.++++++.+ +       +.+..++...++|++.++++.+++++++.+++..+.+..+..  .+
T Consensus       158 ~e~~~~~~~ll~~lGk~~v~v~d~~-G-------fi~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~~g~G~~~~~--~G  227 (314)
T PRK08269        158 PAVVDRLAALLERIGKVPVVCGPSP-G-------YIVPRIQALAMNEAARMVEEGVASAEDIDKAIRTGFGLRFAV--LG  227 (314)
T ss_pred             HHHHHHHHHHHHHcCCcEEEecCCC-C-------cchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccC--cC
Confidence            8999999999999999999998844 3       235566778999999999999999999999998765543211  00


Q ss_pred             CcccCCCCCCCcccchHHHHHHHHHHHHhh-cCCCchHHHHHHHHHHHHHHcCCCCCcHH
Q 025163          186 PTMLQSNYAPAFPLKHQQKDMRLALALGDE-NAVSMPIAAAANEAFKKARSLGLGDNDFS  244 (257)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~-~g~~~p~~~~~~~~~~~~~~~g~~~~d~~  244 (257)
                      +.- --|.   ..++....-...+.+...+ .--|.|++...++.-+.+.+.|.|..||.
T Consensus       228 pf~-~~D~---~Gld~~~~~~~~l~~~~~~~~~~p~~~l~~~v~~g~~G~ksG~GfY~y~  283 (314)
T PRK08269        228 LLE-FIDW---GGCDILYYASRYLAGEIGPDRFAPPAIVVRNMEEGRDGLRTGAGFYDYA  283 (314)
T ss_pred             HHH-HHHh---hhHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHCCCCcccCCCcceeCC
Confidence            100 0011   1122222222222221111 22345666665555555777788888884

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.45  E-value=2.8e-13  Score=95.61  Aligned_cols=71  Identities=24%  Similarity=0.399  Sum_probs=61.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC---CeEEEE-cCCchhHHHHHHC-CCcccC-CHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g---~~V~~~-~r~~~~~~~l~~~-g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ||+|||+|+||.+|++.|.++|   ++|.++ +|++++.+++.++ +..... +..|+++.+|+||+|||+....+.
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v   77 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEV   77 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHH
Confidence            7999999999999999999999   999955 9999999998665 666666 899999999999999998877664

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.44  E-value=2.5e-11  Score=101.36  Aligned_cols=127  Identities=14%  Similarity=0.205  Sum_probs=91.9

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCchhH-----HHHHHCCCcccCCHHHHhh
Q 025163            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK   55 (257)
Q Consensus         1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~~~-----~~l~~~g~~~~~~~~~~~~   55 (257)
                      |||.|.|+|+-                    |.+||.+|+++||+|++||||+++.     +.+.+.|+..++++.++++
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa   80 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK   80 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence            89999999974                    8899999999999999999987655     4588889999999999999


Q ss_pred             cCceEEEccCChHHHHH----------------------------H------HHhcCCcEEeccccCCccccccCcEEEE
Q 025163           56 KCTITIGMLADPAAALS----------------------------A------ITSKGGHFLEAPVSGSKQPAETGQLVIL  101 (257)
Q Consensus        56 ~~dvii~~v~~~~~~~~----------------------------~------~~~~g~~~~~~pv~~~~~~~~~~~~~~~  101 (257)
                      ++|+||+|+|++..++.                            .      +..+.+...+.+-.+-|....++. .++
T Consensus        81 ~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~-~~~  159 (341)
T TIGR01724        81 HGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGH-YVI  159 (341)
T ss_pred             CCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCce-eee
Confidence            99999999999987754                            1      111223332222111122222222 233


Q ss_pred             ec--------CChhhHHHHHHHHHHhcCCeEEeCC
Q 025163          102 SA--------GEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus       102 ~~--------g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      .+        .+++..+++-++.+..++.+|.+..
T Consensus       160 ~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa  194 (341)
T TIGR01724       160 GGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPA  194 (341)
T ss_pred             ccccccccccCCHHHHHHHHHHHHHhCCCeeecch
Confidence            32        2678888999999999988776654

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=99.44  E-value=3.5e-12  Score=105.06  Aligned_cols=242  Identities=14%  Similarity=0.128  Sum_probs=163.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~~~~dv   59 (257)
                      +||+.||+|++|.+....++-+-  .+|+++|.+..++..++..                   +....++++.+++.+|+
T Consensus         2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl   81 (481)
T KOG2666|consen    2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL   81 (481)
T ss_pred             ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence            58999999999999988887543  4799999999887776542                   23456789999999999


Q ss_pred             EEEccCChHHHHH---------------------------------------------HH--HhcCCc--EEeccccCCc
Q 025163           60 TIGMLADPAAALS---------------------------------------------AI--TSKGGH--FLEAPVSGSK   90 (257)
Q Consensus        60 ii~~v~~~~~~~~---------------------------------------------~~--~~~g~~--~~~~pv~~~~   90 (257)
                      ||+.|.++.-...                                             .+  ...|+.  .++.|.+-..
T Consensus        82 vfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpeflae  161 (481)
T KOG2666|consen   82 VFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLAE  161 (481)
T ss_pred             EEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhcc
Confidence            9999876543322                                             11  123433  4556654332


Q ss_pred             cccccC---cEEEEecCC--hhh---HHHHHHHHHHhcCC-eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025163           91 QPAETG---QLVILSAGE--KAL---YDEAISALNVIGKK-AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG  161 (257)
Q Consensus        91 ~~~~~~---~~~~~~~g~--~~~---~~~~~~~l~~~~~~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g  161 (257)
                      ..+...   .=.+++||+  ++-   .+.+..+++..-.+ -+...+..++++-|++.|.+.+--+..++-+.++|++.|
T Consensus       162 gtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatg  241 (481)
T KOG2666|consen  162 GTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATG  241 (481)
T ss_pred             cchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcC
Confidence            222211   113667764  333   34455556655433 234455799999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHHHHHcCCC
Q 025163          162 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFKKARSLGLG  239 (257)
Q Consensus       162 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~~~~~~g~~  239 (257)
                      .|...+..+++..+...+-+         ...+.||..++++||+-.++..|+..++|  ..+.+.+.++-.-. ++++.
T Consensus       242 adv~eva~avg~d~rig~kf---------l~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyq-krrfa  311 (481)
T KOG2666|consen  242 ADVSEVAYAVGTDSRIGSKF---------LNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQ-KRRFA  311 (481)
T ss_pred             CCHHHHHHHhcccccccHHH---------hhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHH-HHHHH
Confidence            99999998888654332222         12356899999999999999999998876  33344444333322 23344


Q ss_pred             CCcHHHHHHHHHh
Q 025163          240 DNDFSAVFEVVKD  252 (257)
Q Consensus       240 ~~d~~~l~~~~~~  252 (257)
                      +.=.+++++.+++
T Consensus       312 ~rii~smFNTVsd  324 (481)
T KOG2666|consen  312 NRIISSMFNTVSD  324 (481)
T ss_pred             HHHHHHHhhcccc
Confidence            4445555555443

>PLN02256 arogenate dehydrogenase

Probab=99.43  E-value=9.3e-12  Score=105.65  Aligned_cols=139  Identities=12%  Similarity=0.145  Sum_probs=96.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|++++. .+...+.|+....+.++++ .++|+||+|||.....+.       
T Consensus        37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l~~~  115 (304)
T PLN02256         37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY-SDIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSLPLQ  115 (304)
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH-HHHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhhhhh
Confidence            6899999999999999999999999999999864 3444556877777888876 479999999997755443       


Q ss_pred             --------------------HHHh---cCCcEEe-ccccCCccc--cccCcEEEEe-------cCChhhHHHHHHHHHHh
Q 025163           73 --------------------AITS---KGGHFLE-APVSGSKQP--AETGQLVILS-------AGEKALYDEAISALNVI  119 (257)
Q Consensus        73 --------------------~~~~---~g~~~~~-~pv~~~~~~--~~~~~~~~~~-------~g~~~~~~~~~~~l~~~  119 (257)
                                          .+..   .+..|+. .|++|....  ...+.-.++.       ..+++..+.++++++.+
T Consensus       116 ~l~~~~iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~l  195 (304)
T PLN02256        116 RLKRSTLFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEE  195 (304)
T ss_pred             ccCCCCEEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHC
Confidence                                1111   1234444 666665432  1222222222       12567888999999999


Q ss_pred             cCCeEEeCCCChHHHHHHHHH
Q 025163          120 GKKAFFLGEVGNGAKMKLVVN  140 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~~n  140 (257)
                      |.+++.+....+-..+-.++.
T Consensus       196 Ga~v~~~~~eeHD~~vA~iSh  216 (304)
T PLN02256        196 GCRMVEMSCEEHDRYAAGSQF  216 (304)
T ss_pred             CCEEEEeCHHHHhHHHHhhhh
Confidence            999988887666655554443

>PLN02712 arogenate dehydrogenase

Probab=99.43  E-value=3.8e-12  Score=118.40  Aligned_cols=134  Identities=12%  Similarity=0.200  Sum_probs=95.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..+|+.|.+.|++|.+|||+... +...+.|+....++++++. .+|+||+|||.....+.       
T Consensus       370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~vi~~l~~~  448 (667)
T PLN02712        370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKVLKSLPFQ  448 (667)
T ss_pred             CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHHHHHHHHh
Confidence            78999999999999999999999999999998653 5555678777778888775 58999999997655443       


Q ss_pred             -----------------------HHHhcCCcEE-eccccCCccccccC--cEE-----EEecCChhhH---HHHHHHHHH
Q 025163           73 -----------------------AITSKGGHFL-EAPVSGSKQPAETG--QLV-----ILSAGEKALY---DEAISALNV  118 (257)
Q Consensus        73 -----------------------~~~~~g~~~~-~~pv~~~~~~~~~~--~~~-----~~~~g~~~~~---~~~~~~l~~  118 (257)
                                             .....+..|+ .+|++|+... ..|  ...     .+++++.+..   +.+.++++.
T Consensus       449 ~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~  527 (667)
T PLN02712        449 RLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAR  527 (667)
T ss_pred             cCCCCcEEEECCCccHHHHHHHHHhccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHH
Confidence                                   1112355677 6888887654 111  111     2334554444   455689999


Q ss_pred             hcCCeEEeCCCChHHHHH
Q 025163          119 IGKKAFFLGEVGNGAKMK  136 (257)
Q Consensus       119 ~~~~~~~~g~~g~a~~~k  136 (257)
                      +|.+++.+....+-..+-
T Consensus       528 lGa~vv~ms~eeHD~~~A  545 (667)
T PLN02712        528 EGCRMVEMSCAEHDWHAA  545 (667)
T ss_pred             cCCEEEEeCHHHHHHHHH
Confidence            999988887755554333

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.42  E-value=8.7e-12  Score=104.89  Aligned_cols=168  Identities=15%  Similarity=0.284  Sum_probs=104.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCc-hhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~-~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|+||.+++..|.++|    ++|.+|+|++ ++.+.+...  +.....+..++++++|+||+|||.....+. 
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl   81 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL   81 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence            68999999999999999999998    7899999864 445555543  345567888888999999999997655543 


Q ss_pred             -HHH---hcCCcEEe----------------------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeE
Q 025163           73 -AIT---SKGGHFLE----------------------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        73 -~~~---~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~  124 (257)
                       .+.   ..+..+++                      +|..  +.....|...+..+.  +++..+.++.+|+.+|. ++
T Consensus        82 ~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~--~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~  158 (277)
T PRK06928         82 KDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSL--TSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VM  158 (277)
T ss_pred             HHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCcc--HHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EE
Confidence             111   12323332                      1111  112233333232222  45567789999999995 44


Q ss_pred             EeCC--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHhhc
Q 025163          125 FLGE--VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLDLG  174 (257)
Q Consensus       125 ~~g~--~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~-g~~~~~~~~~~~~~  174 (257)
                      .+.+  ......+-=....+.+.++.++.++   +.+. |++++...+++...
T Consensus       159 ~v~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~  208 (277)
T PRK06928        159 TIREENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFA  208 (277)
T ss_pred             EEchhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHH
Confidence            5443  2111111112233444555555555   5666 79999888877753

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=99.40  E-value=1.5e-11  Score=104.23  Aligned_cols=212  Identities=15%  Similarity=0.140  Sum_probs=129.7

Q ss_pred             hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhcCceEEEccCChHHHHH---
Q 025163           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus        10 ~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      .||+.+|..|.++||+|++++|+ ++.+.+++.|...              .+++++ ....|+||+|||..+....   
T Consensus         1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~~~~~l~~   78 (293)
T TIGR00745         1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQTEEAAAL   78 (293)
T ss_pred             CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchhHHHHHHH
Confidence            48999999999999999999997 7788888766321              223344 5689999999998876554   


Q ss_pred             ----------------------HHHhc-C-------CcEEeccccCCccccccCcEEEEecC-C--hhhHHHHHHHHHHh
Q 025163           73 ----------------------AITSK-G-------GHFLEAPVSGSKQPAETGQLVILSAG-E--KALYDEAISALNVI  119 (257)
Q Consensus        73 ----------------------~~~~~-g-------~~~~~~pv~~~~~~~~~~~~~~~~~g-~--~~~~~~~~~~l~~~  119 (257)
                                            .+... +       +.+..+-..++......+.-.+.+|. +  .+..+.+.++|+..
T Consensus        79 l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~~~iG~~~~~~~~~~~l~~~l~~~  158 (293)
T TIGR00745        79 LLPLIGKNTKVLFLQNGLGHEERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGATKIGDYVGENEAVEALAELLNEA  158 (293)
T ss_pred             hHhhcCCCCEEEEccCCCCCHHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEeccccEEEecCCCchHHHHHHHHHHHhC
Confidence                                  11111 0       11111111111111111111123332 1  24456788888888


Q ss_pred             cCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCC--HHHHHHHHhhc--
Q 025163          120 GKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLD--PRTLLDVLDLG--  174 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~--~~~~~~~~~~~--  174 (257)
                      +.++....++....|.|++.|...+.                     +...+.|+..++++.|++  .+.+.+.+...  
T Consensus       159 ~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~  238 (293)
T TIGR00745       159 GIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEELVRAVIR  238 (293)
T ss_pred             CCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Confidence            88887888899999999998875442                     245789999999999875  33344433321  


Q ss_pred             --C-CCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          175 --G-IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       175 --~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                        . ..+++..         |+..+... +.-.=.+.+++.++++|+++|..+.++++++..
T Consensus       239 ~~~~~~sSm~~---------D~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~  290 (293)
T TIGR00745       239 MTAENTSSMLQ---------DLLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL  290 (293)
T ss_pred             cCCCCCChHHH---------HHHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence              0 1111111         11111100 011112678999999999999999999988754

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.40  E-value=1.7e-11  Score=115.13  Aligned_cols=158  Identities=16%  Similarity=0.157  Sum_probs=111.6

Q ss_pred             eEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHH-----------HC-------------CCcccCCHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~-----------~~-------------g~~~~~~~~~~~~~   56 (257)
                      ||+|||+|.||..+|..++ .+|++|+++|++++.+++..           +.             .++.++++ +.+++
T Consensus       306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~  384 (699)
T TIGR02440       306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKD  384 (699)
T ss_pred             EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhcc
Confidence            7999999999999999998 58999999999988654431           11             23455666 46789


Q ss_pred             CceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---  104 (257)
                      +|+||-|+|.....+.                          .+.   .+.-.++..+.+.++...   .++-++.+   
T Consensus       385 adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~~g~HffnP~~~~---~lVEvv~g~~T  461 (699)
T TIGR02440       385 VDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAAAASRPENVIGLHYFSPVEKM---PLVEVIPHAGT  461 (699)
T ss_pred             CCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHhcCCcccEEEEecCCccccC---ceEEEeCCCCC
Confidence            9999999999887776                          111   122234444444333222   33444443   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      ++++++.+.++++.+|+.++.+.+ ..+....       -+....+.|+..+.+ .|++++++..++.
T Consensus       462 ~~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~n-------Rl~~~~~~Ea~~l~~-~G~~~~dID~a~~  520 (699)
T TIGR02440       462 SEQTIATTVALAKKQGKTPIVVAD-KAGFYVN-------RILAPYMNEAARLLL-EGEPVEHIDKALV  520 (699)
T ss_pred             CHHHHHHHHHHHHHcCCeEEEEcc-ccchHHH-------HHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            678899999999999999998866 3444432       234467779988887 5679999998885

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.40  E-value=1.1e-11  Score=116.57  Aligned_cols=162  Identities=15%  Similarity=0.166  Sum_probs=115.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..||..++.+|++|+++|++++.+++..           +.|             ++.+++. +.++++
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  393 (715)
T PRK11730        315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV  393 (715)
T ss_pred             eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence            799999999999999999999999999999988765421           122             3445666 456899


Q ss_pred             ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163           58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~  105 (257)
                      |+||-|+|..-..+.                          .+.   .+.-.++..+.+.++...   .++-++.+   +
T Consensus       394 DlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~---~lVEvv~g~~T~  470 (715)
T PRK11730        394 DVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM---PLVEVIRGEKTS  470 (715)
T ss_pred             CEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCCccEEEEecCCccccc---ceEEeeCCCCCC
Confidence            999999999887776                          111   122234444444333322   23334433   6


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      ++.++.+.++++.+|+.++.+.+ ..+....-+       ....++|++.+.++. .+++++..++..+.+
T Consensus       471 ~~~~~~~~~~~~~lgk~pv~v~d-~pGfv~nRi-------~~~~~~ea~~lv~~G-a~~e~ID~a~~~~~G  532 (715)
T PRK11730        471 DETIATVVAYASKMGKTPIVVND-CPGFFVNRV-------LFPYFAGFSQLLRDG-ADFRQIDKVMEKQFG  532 (715)
T ss_pred             HHHHHHHHHHHHHhCCceEEecC-cCchhHHHH-------HHHHHHHHHHHHHcC-CCHHHHHHHHHhhCC
Confidence            88899999999999999988865 445443332       334567998888765 999999999876544

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=99.38  E-value=6.7e-12  Score=98.79  Aligned_cols=141  Identities=16%  Similarity=0.230  Sum_probs=96.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC-chhHHHHHHC-CC-cccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT-LSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~-~~~~~~l~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      |+|+|+|+|+||.++|.+|++.||+|++-+|+ +++.+...+. +. ....++.++++.+|+||++||.......  .+.
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~   81 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR   81 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence            68999999999999999999999999998555 4455544432 32 2345788999999999999998776655  122


Q ss_pred             --hcCCcEEecccc----CCcc--------------------------------------cccc-CcEE-EEecCChhhH
Q 025163           76 --SKGGHFLEAPVS----GSKQ--------------------------------------PAET-GQLV-ILSAGEKALY  109 (257)
Q Consensus        76 --~~g~~~~~~pv~----~~~~--------------------------------------~~~~-~~~~-~~~~g~~~~~  109 (257)
                        ..|-..+|..+.    +.+.                                      .... ++.. +++|.|.++.
T Consensus        82 ~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak  161 (211)
T COG2085          82 DALGGKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAK  161 (211)
T ss_pred             HHhCCeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEecCcHHHH
Confidence              113444442221    1000                                      1111 2333 4555677899


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHH
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNM  141 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~  141 (257)
                      +.+.++.+.+|...+.+|++..+..+.-+.-.
T Consensus       162 ~~v~~L~~~iG~~~ld~G~L~~a~~le~~t~l  193 (211)
T COG2085         162 AVVAELAEDIGFRPLDAGPLENARILEPGTPL  193 (211)
T ss_pred             HHHHHHHHhcCcceeecccccccccccccchH
Confidence            99999999999999999997777665544333

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.38  E-value=1.7e-11  Score=115.15  Aligned_cols=162  Identities=15%  Similarity=0.160  Sum_probs=115.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..||..++.+|++|+++|++++.+++..+           .|             ++.+++. +.++++
T Consensus       315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a  393 (714)
T TIGR02437       315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNV  393 (714)
T ss_pred             eEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence            7999999999999999999999999999999987654321           12             3445566 456899


Q ss_pred             ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163           58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~  105 (257)
                      |+||-+|+.....+.                          .+.   .+.-.++..+.+.++...   .++-++.+   +
T Consensus       394 DlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~---~lvEvv~g~~Ts  470 (714)
T TIGR02437       394 DIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAKALKRPENFCGMHFFNPVHRM---PLVEVIRGEKSS  470 (714)
T ss_pred             CEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCcccEEEEecCCCcccC---ceEeecCCCCCC
Confidence            999999999888776                          111   122234444444333322   33444444   5


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      +++++.+.++++.+|+.++.+.+ ..+....-       +....+.|+..+.+. |.+++++..++..+.+
T Consensus       471 ~~~~~~~~~~~~~lgk~pv~v~d-~pGfi~NR-------l~~~~~~ea~~l~~e-G~~~~~ID~a~~~~~G  532 (714)
T TIGR02437       471 DETIATVVAYASKMGKTPIVVND-CPGFFVNR-------VLFPYFGGFSKLLRD-GADFVRIDKVMEKQFG  532 (714)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeCC-cccchHHH-------HHHHHHHHHHHHHHC-CCCHHHHHHHHHhcCC
Confidence            78899999999999999988876 44444332       234567799988865 5999999999876544

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.35  E-value=4.4e-11  Score=112.60  Aligned_cols=158  Identities=15%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             eEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~-----------~~g-------------~~~~~~~~~~~~~   56 (257)
                      ||+|||+|.||..||..++ .+|++|+++|++++.+++..           +.|             ++.+++. +.+++
T Consensus       311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~  389 (708)
T PRK11154        311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKH  389 (708)
T ss_pred             EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhcc
Confidence            7999999999999999999 88999999999988654421           112             3445566 56789


Q ss_pred             CceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---  104 (257)
                      +|+||-|+|.....+.                          .+.   .+.-.++..+.+.++...   .++-++.+   
T Consensus       390 aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~---~lVEvv~g~~T  466 (708)
T PRK11154        390 ADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKM---PLVEVIPHAKT  466 (708)
T ss_pred             CCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHHhcCcccceEEEecCCccccC---ceEEEECCCCC
Confidence            9999999999877776                          111   122345555544443322   23444443   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +++..+.+..+++.+|+.++.+.+ ..+....       -+....++|+..+.++ |++++++..++.
T Consensus       467 s~~~~~~~~~~~~~~gk~pv~v~d-~pGfi~n-------Rl~~~~~~EA~~lv~e-Gv~~~dID~a~~  525 (708)
T PRK11154        467 SAETIATTVALAKKQGKTPIVVRD-GAGFYVN-------RILAPYINEAARLLLE-GEPIEHIDAALV  525 (708)
T ss_pred             CHHHHHHHHHHHHHcCCceEEEec-cCcHHHH-------HHHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            678899999999999998888865 4444433       2345667799988876 789999988876

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.34  E-value=8e-11  Score=100.22  Aligned_cols=68  Identities=26%  Similarity=0.407  Sum_probs=56.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      +||+|||+|+||.+++.+|.+.|++|+++++ ++++.+.+.+.|+.+. ++.++++++|+|+++||+...
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~   72 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQ   72 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhH
Confidence            5899999999999999999999999877654 4456677777788654 688889999999999998733

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.34  E-value=7.1e-12  Score=98.59  Aligned_cols=122  Identities=17%  Similarity=0.302  Sum_probs=81.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------C-------------CCcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~-------------g~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..+|..++.+|++|++||++++.++...+           .             .+...++++++. ++
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            7999999999999999999999999999999987644322           1             245678898888 99


Q ss_pred             ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEec---CC
Q 025163           58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSA---GE  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~---g~  105 (257)
                      |+||-|+|.....+.                          .+.   .+.-.++..+.+.++...   .++-++.   .+
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~~~~p~R~ig~Hf~~P~~~~---~lVEvv~~~~T~  156 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAAALSRPERFIGMHFFNPPHLM---PLVEVVPGPKTS  156 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTTSSTGGGEEEEEE-SSTTT-----EEEEEE-TTS-
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhccCcCceEEEEecccccccC---ceEEEeCCCCCC
Confidence            999999999887776                          111   011234444444333222   2233333   36


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeC
Q 025163          106 KALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                      ++..+.+..+++.+|+.++.+.
T Consensus       157 ~~~~~~~~~~~~~~gk~pv~v~  178 (180)
T PF02737_consen  157 PETVDRVRALLRSLGKTPVVVK  178 (180)
T ss_dssp             HHHHHHHHHHHHHTT-EEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEec
Confidence            8889999999999998877663

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.33  E-value=2.2e-12  Score=101.78  Aligned_cols=69  Identities=20%  Similarity=0.313  Sum_probs=51.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|++|..+|..|+++||+|+++|.|+++++.+++.                    .....++..++++++|++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            999999999999999999999999999999999999888652                    134567888889999999


Q ss_pred             EEccCChHH
Q 025163           61 IGMLADPAA   69 (257)
Q Consensus        61 i~~v~~~~~   69 (257)
                      |+|||++..
T Consensus        81 ~I~VpTP~~   89 (185)
T PF03721_consen   81 FICVPTPSD   89 (185)
T ss_dssp             EE----EBE
T ss_pred             EEecCCCcc
Confidence            999997743

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.33  E-value=5e-11  Score=112.32  Aligned_cols=158  Identities=19%  Similarity=0.230  Sum_probs=112.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~   57 (257)
                      +|+|||+|.||..||..++.+|++|+++|++++.+++..+           .|             ++.+++.+ .++++
T Consensus       337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a  415 (737)
T TIGR02441       337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA  415 (737)
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence            6999999999999999999999999999999987655321           12             34456664 56899


Q ss_pred             ceEEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---C
Q 025163           58 TITIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---E  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~  105 (257)
                      |+||-+|+.+..++.                          .+.   .+.-.++..+.+.++...   .++-++.+   +
T Consensus       416 DlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m---~LvEvv~g~~Ts  492 (737)
T TIGR02441       416 DMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKM---QLLEIITHDGTS  492 (737)
T ss_pred             CeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCccceEEEeccCCcccC---ceEEEeCCCCCC
Confidence            999999999888776                          111   122234444444333222   33444443   6


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +++++.+..+++.+|+.++.+.+ ..+....-       +....+.|+..+.+. |++++++..++.
T Consensus       493 ~~~~~~~~~~~~~lgk~pv~v~d-~pGFi~NR-------i~~~~~~ea~~lv~e-Gv~~~~ID~a~~  550 (737)
T TIGR02441       493 KDTLASAVAVGLKQGKVVIVVKD-GPGFYTTR-------CLGPMLAEVIRLLQE-GVDPKKLDKLTT  550 (737)
T ss_pred             HHHHHHHHHHHHHCCCeEEEECC-cCCchHHH-------HHHHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            78899999999999999988876 44444332       334677799888755 679999998864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.30  E-value=1.7e-11  Score=96.61  Aligned_cols=217  Identities=16%  Similarity=0.178  Sum_probs=142.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC------------------CcccCCHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~   52 (257)
                      .++|||+|.||+.+|+.-+..|++|.++|+|++.+.+..+           .+                  ++.+++..+
T Consensus        13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~   92 (298)
T KOG2304|consen   13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD   92 (298)
T ss_pred             ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence            5899999999999999999999999999999887665432           11                  345678888


Q ss_pred             HhhcCceEEEccCChHHHHH-----------------------HHH------h-----cCCcEEeccccCCccccccCcE
Q 025163           53 VIKKCTITIGMLADPAAALS-----------------------AIT------S-----KGGHFLEAPVSGSKQPAETGQL   98 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~~~~~-----------------------~~~------~-----~g~~~~~~pv~~~~~~~~~~~~   98 (257)
                      +++++|+||-++-.....+.                       .+.      .     .|.+|+.     +++.-   .+
T Consensus        93 ~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~~~~~~srf~GlHFfN-----PvPvM---KL  164 (298)
T KOG2304|consen   93 AVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIASATQRPSRFAGLHFFN-----PVPVM---KL  164 (298)
T ss_pred             hhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHhhccChhhhceeeccC-----CchhH---HH
Confidence            88889999877655544443                       000      0     1333332     22111   11


Q ss_pred             EEEecC---ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 025163           99 VILSAG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG  175 (257)
Q Consensus        99 ~~~~~g---~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~  175 (257)
                      +-++.+   .++.+..+..+-+.+|+..+.+-+ -.+..+       ..+++-.+.|+++++++...+.+++...+..++
T Consensus       165 vEVir~~~TS~eTf~~l~~f~k~~gKttVackD-tpGFIV-------NRlLiPyl~ea~r~yerGdAskeDIDtaMklGa  236 (298)
T KOG2304|consen  165 VEVIRTDDTSDETFNALVDFGKAVGKTTVACKD-TPGFIV-------NRLLIPYLMEAIRMYERGDASKEDIDTAMKLGA  236 (298)
T ss_pred             hhhhcCCCCCHHHHHHHHHHHHHhCCCceeecC-CCchhh-------hHHHHHHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence            222222   468888899999999998888877 333332       234466778999999999999999999999887


Q ss_pred             CCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHH--hhcCCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163          176 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALG--DENAVSMPIAAAANEAFKKARSLGLGDNDF  243 (257)
Q Consensus       176 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~  243 (257)
                      ++. +-    |.-+ .||-   .++.+.--++-..+.-  ...-.|.|+++..+.--+.+.+.|.|..+|
T Consensus       237 gyP-MG----PfEL-~Dyv---GLDt~kfvmdgwhe~~pe~~~f~psPll~klVaegklGrKtg~GfY~Y  297 (298)
T KOG2304|consen  237 GYP-MG----PFEL-ADYV---GLDTCKFVMDGWHEGYPEDSLFAPSPLLDKLVAEGKLGRKTGEGFYKY  297 (298)
T ss_pred             CCC-CC----hHHH-HHHh---hHHHHHHHHHHHHhcCCcccccCCChHHHHHHhccccccccCccceec
Confidence            662 11    1111 2222   1332322233333322  233478999998888777787788777665

>PLN02712 arogenate dehydrogenase

Probab=99.27  E-value=1.9e-10  Score=107.17  Aligned_cols=138  Identities=11%  Similarity=0.139  Sum_probs=94.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|+|+... +...+.|+....++.+++ +++|+||+|||.....+.       
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~~~  131 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLPLQ  131 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhhhh
Confidence            68999999999999999999999999999998544 455567887777888855 569999999997654443       


Q ss_pred             --------------------HHH---hcCCcEEe-ccccCCccc--cccCcEEEEe----cCCh---hhHHHHHHHHHHh
Q 025163           73 --------------------AIT---SKGGHFLE-APVSGSKQP--AETGQLVILS----AGEK---ALYDEAISALNVI  119 (257)
Q Consensus        73 --------------------~~~---~~g~~~~~-~pv~~~~~~--~~~~~~~~~~----~g~~---~~~~~~~~~l~~~  119 (257)
                                          .+.   ..+..|+. .|++|+...  ...+...++.    +.+.   +.++.++++++.+
T Consensus       132 ~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l  211 (667)
T PLN02712        132 RLKRNTLFVDVLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFERE  211 (667)
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHc
Confidence                                111   12344544 777776532  1122222222    2222   2356677999999


Q ss_pred             cCCeEEeCCCChHHHHHHHH
Q 025163          120 GKKAFFLGEVGNGAKMKLVV  139 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~~  139 (257)
                      |.+++.+....+-..+-.++
T Consensus       212 Ga~v~~ms~eeHD~~~A~vs  231 (667)
T PLN02712        212 GCKMVEMSCTEHDKYAAESQ  231 (667)
T ss_pred             CCEEEEeCHHHHHHHHHHHH
Confidence            99988887655554444443

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=99.27  E-value=6.6e-12  Score=92.42  Aligned_cols=72  Identities=24%  Similarity=0.395  Sum_probs=53.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEE-EcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|++|..|+..|.++||+|.. |+|+++..+++... +.....++.|+++++|++|++||++...+.
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~v   84 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEV   84 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHH
Confidence            6999999999999999999999999766 48988888877664 445556788899999999999999977665

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.23  E-value=5.5e-10  Score=96.82  Aligned_cols=130  Identities=15%  Similarity=0.190  Sum_probs=95.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------   72 (257)
                      ++|+|||+ |.||..+|+.|.+. +++|+++|++.+           ...++.+.++++|+||+|||.....+.      
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv~~~~~~l~~l~~   73 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPIRHTAALIEEYVA   73 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCHHHHHHHHHHHhh
Confidence            58999999 99999999999974 889999998521           234677888999999999998766544      


Q ss_pred             -----------------------HHHhcCCcEEe-ccccCCcc-ccccCcEEEEecC-ChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 -----------------------AITSKGGHFLE-APVSGSKQ-PAETGQLVILSAG-EKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 -----------------------~~~~~g~~~~~-~pv~~~~~-~~~~~~~~~~~~g-~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                             .....+..|+. .|++|+.. ...++...++..+ ..+..+.++++++.+|.+++.+
T Consensus        74 ~~~~l~~~~iVtDVgSvK~~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~  153 (370)
T PRK08818         74 LAGGRAAGQLWLDVTSIKQAPVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYA  153 (370)
T ss_pred             hhcCCCCCeEEEECCCCcHHHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEc
Confidence                                   11122345665 67887753 3345665555544 3444678899999999999888


Q ss_pred             CCCChHHHHHHHHHH
Q 025163          127 GEVGNGAKMKLVVNM  141 (257)
Q Consensus       127 g~~g~a~~~kl~~n~  141 (257)
                      ....+-..+-.++.+
T Consensus       154 ~aeeHD~~~A~vS~L  168 (370)
T PRK08818        154 TPEHHDRVMALVQAM  168 (370)
T ss_pred             CHHHHHHHHHHHHHH
Confidence            887777777776543

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.23  E-value=3.8e-10  Score=107.36  Aligned_cols=140  Identities=17%  Similarity=0.220  Sum_probs=97.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~----   72 (257)
                      .||+|||+|.||.++++.|.++|  ++|++|||++++++.+.+.|..  ...+..++++++|+||+|||.....+.    
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l   83 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL   83 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence            37999999999999999999998  4899999999998888887864  455778888999999999997644333    


Q ss_pred             ----------------------HHHh----cCCcEE-eccccCCcc--------ccccCcEEEEec---CChhhHHHHHH
Q 025163           73 ----------------------AITS----KGGHFL-EAPVSGSKQ--------PAETGQLVILSA---GEKALYDEAIS  114 (257)
Q Consensus        73 ----------------------~~~~----~g~~~~-~~pv~~~~~--------~~~~~~~~~~~~---g~~~~~~~~~~  114 (257)
                                            .+..    ..+.|+ ..|++|+..        ....+...++..   ++++.++.+++
T Consensus        84 ~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (735)
T PRK14806         84 KPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDR  163 (735)
T ss_pred             HHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHH
Confidence                                  1111    123333 356554432        111222233332   46678889999


Q ss_pred             HHHHhcCCeEEeCCCChHHHHHHHHH
Q 025163          115 ALNVIGKKAFFLGEVGNGAKMKLVVN  140 (257)
Q Consensus       115 ~l~~~~~~~~~~g~~g~a~~~kl~~n  140 (257)
                      +++.+|.+++++.+..+...+-++..
T Consensus       164 l~~~~G~~~~~~~~~~hD~~~a~~~~  189 (735)
T PRK14806        164 LWRAVGADVLHMDVAHHDEVLAATSH  189 (735)
T ss_pred             HHHHcCCEEEEcCHHHHhHHHHHhcc
Confidence            99999988888876544444444433

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.22  E-value=2e-09  Score=90.69  Aligned_cols=69  Identities=28%  Similarity=0.317  Sum_probs=58.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      .+|+|||+|+||.++|++|...|++|++|+|.....+.....|..+. +++|+++.+|+|++++|++...
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t~   85 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQA   85 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHHH
Confidence            37999999999999999999999999999886555455555687654 8999999999999999986553

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=99.09  E-value=1.5e-09  Score=90.69  Aligned_cols=245  Identities=13%  Similarity=0.067  Sum_probs=140.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CC-----eEEEEcCCch------hHHHHHH-C--------------CCcccCCHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLS------KCDELVA-H--------------GATVGGSPAEV   53 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~-----~V~~~~r~~~------~~~~l~~-~--------------g~~~~~~~~~~   53 (257)
                      ||+|||.|+||+++|+.+.++  ++     +|..|-+..+      ++.+... .              ++...+|+.++
T Consensus        23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea  102 (372)
T KOG2711|consen   23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA  102 (372)
T ss_pred             EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence            799999999999999999865  22     6888855322      3322222 1              24567799999


Q ss_pred             hhcCceEEEccCChHHHHH--HHH----------------------------------hc--CCcEEeccccCCcccccc
Q 025163           54 IKKCTITIGMLADPAAALS--AIT----------------------------------SK--GGHFLEAPVSGSKQPAET   95 (257)
Q Consensus        54 ~~~~dvii~~v~~~~~~~~--~~~----------------------------------~~--g~~~~~~pv~~~~~~~~~   95 (257)
                      ++++|+++..+|..-....  .+.                                  ..  .+.++.+|..+.......
T Consensus       103 ~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~  182 (372)
T KOG2711|consen  103 AKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEK  182 (372)
T ss_pred             hccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhcc
Confidence            9999999999998765544  000                                  01  122333333333222222


Q ss_pred             CcEEEEecCChhhH-HHHHHHHHHhcCCeEEeCCC-----------------ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163           96 GQLVILSAGEKALY-DEAISALNVIGKKAFFLGEV-----------------GNGAKMKLVVNMIMGCMMNTFSEGLVLA  157 (257)
Q Consensus        96 ~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~g~~-----------------g~a~~~kl~~n~~~~~~~~~~~E~~~l~  157 (257)
                      -.-..+.+.++... ..+.++|+.-.+.+..+.+.                 |-...+.+.+|+-.+++...+.|+..+.
T Consensus       183 f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTkaAi~r~Gl~Em~~F~  262 (372)
T KOG2711|consen  183 FCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKAAIIRLGLLEMIKFA  262 (372)
T ss_pred             ccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHHHHHHhhHHHHHHHH
Confidence            11112222222222 23667776554444333221                 4445566678888889999999999998


Q ss_pred             HHc-CC-CHHHHHHHHhhc----CCCchhhhccCCcccCCC---------CCCCcccchHHHHHHHHHHHHhhcCC--Cc
Q 025163          158 EKS-GL-DPRTLLDVLDLG----GIANPMFKGKGPTMLQSN---------YAPAFPLKHQQKDMRLALALGDENAV--SM  220 (257)
Q Consensus       158 ~~~-g~-~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~---------~~~~~~~~~~~kd~~~~~~~a~~~g~--~~  220 (257)
                      +.. +- .++++.+.....    +++....+.....+..+.         .-.+- .-......+.+.+++++.+.  ..
T Consensus       263 ~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~Gq-~~QG~~Ta~~Vy~~L~~~~l~~kf  341 (372)
T KOG2711|consen  263 THFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNGQ-KLQGPATAKEVYELLQKKGLVEKF  341 (372)
T ss_pred             HHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCCC-cccCcHHHHHHHHHHHHcChhhhC
Confidence            874 22 444444332211    122222222212222111         00010 11123345788999999998  89


Q ss_pred             hHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          221 PIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       221 p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      |++.+++++..       ++....+|++.++++.
T Consensus       342 PlftaVykI~~-------~~~~~~~lle~l~~~~  368 (372)
T KOG2711|consen  342 PLFTAVYKICY-------ERLPPQALLECLRNHP  368 (372)
T ss_pred             cHHHHHHHHHh-------cCCCHHHHHHHHhccc
Confidence            99999998875       5568888999988754

>PRK06444 prephenate dehydrogenase; Provisional

Probab=99.04  E-value=2e-08  Score=79.73  Aligned_cols=113  Identities=19%  Similarity=0.200  Sum_probs=80.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||. |.||..++..|.++|++|+                          ++++|+||+|+|.....+.       
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv~~~~~~i~~~~~~   54 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPIDAALNYIESYDNN   54 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCHHHHHHHHHHhCCe
Confidence            89999988 9999999999999999986                          2588999999998876654       


Q ss_pred             ---------HHHhcCCcEEe-ccccCCccccccC--cEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH
Q 025163           73 ---------AITSKGGHFLE-APVSGSKQPAETG--QLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV  138 (257)
Q Consensus        73 ---------~~~~~g~~~~~-~pv~~~~~~~~~~--~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~  138 (257)
                               .+......|+. .|++|+.. +..+  ...++..  .+++..+.++++++  |.+++.+....+-..+-.+
T Consensus        55 v~Dv~SvK~~i~~~~~~~vg~HPMfGp~~-a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~i  131 (197)
T PRK06444         55 FVEISSVKWPFKKYSGKIVSIHPLFGPMS-YNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEI  131 (197)
T ss_pred             EEeccccCHHHHHhcCCEEecCCCCCCCc-CcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHH
Confidence                     22233445666 77887433 3221  2223332  24556678889888  7788877776777666666


Q ss_pred             HHHH
Q 025163          139 VNMI  142 (257)
Q Consensus       139 ~n~~  142 (257)
                      +.+.
T Consensus       132 shLp  135 (197)
T PRK06444        132 MVKP  135 (197)
T ss_pred             HHHH
Confidence            5543

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=99.01  E-value=1.4e-08  Score=84.86  Aligned_cols=125  Identities=14%  Similarity=0.138  Sum_probs=89.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCcccCCHHHHh-hcCceEEEccCChHHHHH-------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVI-KKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~-------   72 (257)
                      +|+|||.|+||..+|..|.++||.|..++|+.  ...+++ .|....+.+.+.+ +.+|+|++||........       
T Consensus        54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatypfq  131 (480)
T KOG2380|consen   54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYPFQ  131 (480)
T ss_pred             EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcCch
Confidence            69999999999999999999999999999965  444444 4777777787766 579999999986655443       


Q ss_pred             --------------------HH---HhcCCcEEe-ccccCCccccccCc-EEEEe----cC----ChhhHHHHHHHHHHh
Q 025163           73 --------------------AI---TSKGGHFLE-APVSGSKQPAETGQ-LVILS----AG----EKALYDEAISALNVI  119 (257)
Q Consensus        73 --------------------~~---~~~g~~~~~-~pv~~~~~~~~~~~-~~~~~----~g----~~~~~~~~~~~l~~~  119 (257)
                                          .+   .++.+..+. .|++|+.......+ ++++.    .|    .++.++.+.+++...
T Consensus       132 rlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~ce  211 (480)
T KOG2380|consen  132 RLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACE  211 (480)
T ss_pred             hhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhc
Confidence                                11   123444433 67777762222222 22222    23    378899999999999


Q ss_pred             cCCeEEeCC
Q 025163          120 GKKAFFLGE  128 (257)
Q Consensus       120 ~~~~~~~g~  128 (257)
                      +++.+++.-
T Consensus       212 gckmVemS~  220 (480)
T KOG2380|consen  212 GCKMVEMSY  220 (480)
T ss_pred             CCeEEEEEe
Confidence            999888754

>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.93  E-value=2.3e-08  Score=70.04  Aligned_cols=93  Identities=18%  Similarity=0.144  Sum_probs=76.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA  209 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~  209 (257)
                      ..+++.|+..|.+.++.+++++|...+|++.|+|..++.++++.....++       ...  ...+++...+..||...+
T Consensus         2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~-------~~~--~pg~g~GG~ClpkD~~~L   72 (96)
T PF00984_consen    2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGP-------HYL--RPGPGFGGSCLPKDPYAL   72 (96)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTS-------SS---S-SSS--SSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCccccc-------ccC--CCCCCCCCcchhhhHHHH
Confidence            56899999999999999999999999999999999999999997633321       111  112367889999999999


Q ss_pred             HHHHhhcCCCchHHHHHHHHHH
Q 025163          210 LALGDENAVSMPIAAAANEAFK  231 (257)
Q Consensus       210 ~~~a~~~g~~~p~~~~~~~~~~  231 (257)
                      ...++++|.+.++++++.+.-+
T Consensus        73 ~~~~~~~g~~~~ll~~~~~~N~   94 (96)
T PF00984_consen   73 IYLAKELGYPPQLLEAVININE   94 (96)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHhcC
Confidence            9999999999999999887654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.91  E-value=6.4e-09  Score=78.76  Aligned_cols=71  Identities=30%  Similarity=0.351  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      .+|+|||.|+.|.+.|.+|.+.|.+|++..|..+ ..++..+.|..+. +..|+++.+|+|++.+|+....+.
T Consensus         5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD~~q~~v   76 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPDEVQPEV   76 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-HHHHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCChHHHHHH
Confidence            3799999999999999999999999999988777 6777788887765 899999999999999998777665

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.89  E-value=1.5e-07  Score=75.32  Aligned_cols=150  Identities=18%  Similarity=0.155  Sum_probs=90.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHh-hcCceEEEccCChHHHHHHHHhcC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSAITSKG   78 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~~~~~~g   78 (257)
                      |+|+|+|+|+||..+++.|.+.|++|+++|+++++++.+.+. |....++ .++. .++|+++.|.......+..+..-+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~~~l~  107 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTIPQLK  107 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHHHHcC
Confidence            579999999999999999999999999999999998888766 7665544 4444 489999977654433333333332


Q ss_pred             CcEEeccccCCccccccCcEEEEecCChhhH-HHHHHHHHHhcCCeEEeCCCCh------HHHHHHHHH------HHHHH
Q 025163           79 GHFLEAPVSGSKQPAETGQLVILSAGEKALY-DEAISALNVIGKKAFFLGEVGN------GAKMKLVVN------MIMGC  145 (257)
Q Consensus        79 ~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~l~~~~~~~~~~g~~g~------a~~~kl~~n------~~~~~  145 (257)
                      ..+                  ++-+++.... .+..++|+.-|..  ++.+...      .....+..|      -....
T Consensus       108 ~~~------------------v~~~AN~~~~~~~~~~~L~~~Gi~--~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~  167 (200)
T cd01075         108 AKA------------------IAGAANNQLADPRHGQMLHERGIL--YAPDYVVNAGGLINVADELYGGNEARVLAKVEA  167 (200)
T ss_pred             CCE------------------EEECCcCccCCHhHHHHHHHCCCE--EeCceeeeCcCceeehhHHhCCcHHHHHHHHHH
Confidence            221                  2222222222 3456666665532  2221000      011111111      11122


Q ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163          146 MMNTFSEGLVLAEKSGLDPRTLLDVL  171 (257)
Q Consensus       146 ~~~~~~E~~~l~~~~g~~~~~~~~~~  171 (257)
                      ....+.+.+..+++.|+++......+
T Consensus       168 ~~~~~~~v~~~a~~~~~~~~~aA~~~  193 (200)
T cd01075         168 IYDTLLEIFAQAKQDGITTLEAADRM  193 (200)
T ss_pred             HHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            25677778888888888877665444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.89  E-value=1.2e-08  Score=74.80  Aligned_cols=106  Identities=23%  Similarity=0.315  Sum_probs=80.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.+|......+.+.  +.+| .++|+++++.+.+.+ .|....+|.+++++  +.|+|++|+|+....+.  
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~   80 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK   80 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence            6999999999999999999887  3454 578999999988754 58889999999987  78999999999888776  


Q ss_pred             HHHhcCCc-EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                      .....|.+ +++-|+..                +.+..+++.+..+.-+..
T Consensus        81 ~~l~~g~~v~~EKP~~~----------------~~~~~~~l~~~a~~~~~~  115 (120)
T PF01408_consen   81 KALEAGKHVLVEKPLAL----------------TLEEAEELVEAAKEKGVK  115 (120)
T ss_dssp             HHHHTTSEEEEESSSSS----------------SHHHHHHHHHHHHHHTSC
T ss_pred             HHHHcCCEEEEEcCCcC----------------CHHHHHHHHHHHHHhCCE
Confidence            45556665 56666542                344445666666665544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.87  E-value=6.2e-08  Score=80.71  Aligned_cols=134  Identities=14%  Similarity=0.201  Sum_probs=92.4

Q ss_pred             HHHHHHHCC--CeEEEEcCCchhHHHHHHCCCcccC-CHHHHhhcCceEEEccCChHHHHH-------------------
Q 025163           15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS-------------------   72 (257)
Q Consensus        15 la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~-------------------   72 (257)
                      +|+.|.++|  ++|++||++++.++...+.|+.-.. +..+.++++|+||+|||.....+.                   
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S   80 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS   80 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC
Confidence            588899999  6899999999999888888865322 226788999999999998776655                   


Q ss_pred             ----------HHHhcCCcEEe-ccccCC--------ccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEEeCCCC
Q 025163           73 ----------AITSKGGHFLE-APVSGS--------KQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFFLGEVG  130 (257)
Q Consensus        73 ----------~~~~~g~~~~~-~pv~~~--------~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~~g~~g  130 (257)
                                .....+..|+. .|++|+        ......+...+++..   +++.++.++++++.+|.+++.+....
T Consensus        81 vK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~ee  160 (258)
T PF02153_consen   81 VKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEE  160 (258)
T ss_dssp             -CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHH
T ss_pred             CCHHHHHHHHHhcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHH
Confidence                      22223567776 778877        345556666666643   45788999999999999988887677


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 025163          131 NGAKMKLVVNMIMGCMMN  148 (257)
Q Consensus       131 ~a~~~kl~~n~~~~~~~~  148 (257)
                      +-..+-+++.+.-.+...
T Consensus       161 HD~~~A~vshlpH~~a~a  178 (258)
T PF02153_consen  161 HDRIMAYVSHLPHLLASA  178 (258)
T ss_dssp             HHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777776654443333

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.86  E-value=1e-08  Score=88.22  Aligned_cols=68  Identities=22%  Similarity=0.223  Sum_probs=57.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|||||+|.||..+|+.|...|++|.+|||+++.....    .....+++++++++|+|++|+|.......
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~  214 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYH  214 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHH
Confidence            689999999999999999999999999999987654322    23456899999999999999998876544

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.86  E-value=5.4e-08  Score=81.52  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=65.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||||||+|.||..++..|.+.  ++++. +|||++++.+.+.+. |. ...++++++++++|+|++|+|+....+.  .
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h~e~~~~   86 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVLRAIVEP   86 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHHHHHHHH
Confidence            5899999999999999999874  67765 789999998877654 53 5678899999999999999998877554  3


Q ss_pred             HHhcCCcEE
Q 025163           74 ITSKGGHFL   82 (257)
Q Consensus        74 ~~~~g~~~~   82 (257)
                      ....|.+++
T Consensus        87 aL~aGk~Vi   95 (271)
T PRK13302         87 VLAAGKKAI   95 (271)
T ss_pred             HHHcCCcEE
Confidence            334555543

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.85  E-value=6e-08  Score=81.07  Aligned_cols=81  Identities=19%  Similarity=0.341  Sum_probs=63.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||..++..|.+.  +++ +.++||++++.+.+.+. +.....++++++.++|+|++|+|.....+.  ..
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~~~~~~~a   81 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAVEEVVPKS   81 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHHHHHHHHH
Confidence            7999999999999999999876  355 66789999998887653 667778999988899999999987766544  22


Q ss_pred             HhcCCcE
Q 025163           75 TSKGGHF   81 (257)
Q Consensus        75 ~~~g~~~   81 (257)
                      ...|.++
T Consensus        82 l~~Gk~V   88 (265)
T PRK13304         82 LENGKDV   88 (265)
T ss_pred             HHcCCCE
Confidence            3345444

>PRK07574 formate dehydrogenase; Provisional

Probab=98.83  E-value=1.6e-08  Score=88.26  Aligned_cols=72  Identities=19%  Similarity=0.144  Sum_probs=61.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|||||+|.||..+|++|...|.+|.+|||+....+...+.|+....+++|+++.||+|++++|.....+.
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  264 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEH  264 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHH
Confidence            589999999999999999999999999999986444444455776667899999999999999998877665

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.83  E-value=1.8e-07  Score=77.30  Aligned_cols=198  Identities=14%  Similarity=0.171  Sum_probs=115.3

Q ss_pred             CCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HHH---hcCCcEEe-------------
Q 025163           23 GFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AIT---SKGGHFLE-------------   83 (257)
Q Consensus        23 g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~---~~g~~~~~-------------   83 (257)
                      .++|++|+|++++.+.+.+. |+....+..++++++|+||+|||+....+.  .+.   ..+-.+++             
T Consensus         9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~   88 (245)
T TIGR00112         9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLSQL   88 (245)
T ss_pred             CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHHHH
Confidence            47899999999999888664 888888999999999999999995544332  111   11112222             


Q ss_pred             ----------ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHHHHHHHHHHHHH
Q 025163           84 ----------APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLVVNMIMGCMMNT  149 (257)
Q Consensus        84 ----------~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~~n~~~~~~~~~  149 (257)
                                +|.  .+...+.+...+..+.  +++..+.++++|+.+|. ++.+.+  ......+--....+.+.++..
T Consensus        89 ~~~~~~ivR~mPn--~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~~~~~~~a  165 (245)
T TIGR00112        89 LGGTRRVVRVMPN--TPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAYVFLFIEA  165 (245)
T ss_pred             cCCCCeEEEECCC--hHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHHHHHHHHH
Confidence                      111  1112223333333332  34556789999999995 455654  333333333445555556666


Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHhhcC-CCchhhhcc--C-CcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHH
Q 025163          150 FSEGLVLAEKSGLDPRTLLDVLDLGG-IANPMFKGK--G-PTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAA  225 (257)
Q Consensus       150 ~~E~~~l~~~~g~~~~~~~~~~~~~~-~~s~~~~~~--~-~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~  225 (257)
                      +.++   +.+.|++++...+++.... +...+....  . ..+.+.-.+|+-+       ....++..++.|+.--+.++
T Consensus       166 l~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~~~l~~~v~spgGt-------T~~gl~~Le~~~~~~~~~~a  235 (245)
T TIGR00112       166 LADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHPALLKDQVTSPGGT-------TIAGLAVLEEKGVRGAVIEA  235 (245)
T ss_pred             HHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHcCCCCcHH-------HHHHHHHHHHCChHHHHHHH
Confidence            6665   7788999999998887542 222222111  0 1111222233221       23356666777777666666


Q ss_pred             HHHHHHHH
Q 025163          226 ANEAFKKA  233 (257)
Q Consensus       226 ~~~~~~~~  233 (257)
                      +...++++
T Consensus       236 ~~aa~~r~  243 (245)
T TIGR00112       236 VEAAVRRS  243 (245)
T ss_pred             HHHHHHHh
Confidence            66666554

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.81  E-value=1.3e-08  Score=77.98  Aligned_cols=69  Identities=25%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CC----cccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~----~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|+|||+|.||..++..|.+.| ++|++++|++++.+.+.+. +.    ....+..++++++|+||.|+|....
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK   94 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence            47999999999999999999986 7899999999988877654 32    2345777778899999999998754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN03139 formate dehydrogenase; Provisional

Probab=98.80  E-value=2.4e-08  Score=87.21  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=62.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|||||+|+||..+|+.|..-|.+|.+|||+....+...+.|+....+++|+++++|+|++++|.....+.
T Consensus       200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~  271 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRG  271 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHH
Confidence            479999999999999999999999999999986554545556777777999999999999999998877665

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.74  E-value=2.2e-08  Score=76.45  Aligned_cols=69  Identities=19%  Similarity=0.330  Sum_probs=56.0

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC--------------CHHHHhhcCceEEEccCChH
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--------------~~~~~~~~~dvii~~v~~~~   68 (257)
                      |+|+|+|.||..+|..|.+.|++|+++.|.+ +.+.+++.|+....              +..+..+..|+||+||+..+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAYQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGGG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecccc
Confidence            7899999999999999999999999999988 88888887653322              12235578999999999988


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus        80 ~~~~   83 (151)
T PF02558_consen   80 LEQA   83 (151)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            7665

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.74  E-value=4.6e-08  Score=76.90  Aligned_cols=68  Identities=22%  Similarity=0.282  Sum_probs=55.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      .+|||||+|.+|..+|+.|..-|.+|++|||+..........+. ...+++|+++.+|+|++++|....
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~  104 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPE  104 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTT
T ss_pred             CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccc
Confidence            37999999999999999999999999999999887665666666 445999999999999999996543

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.70  E-value=7.2e-08  Score=83.17  Aligned_cols=70  Identities=16%  Similarity=0.257  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|||||+|.||..+|+.|...|++|.+|||++... .....|... .+++++++++|+|++|+|.......
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~-~~l~ell~~aDiV~l~lP~t~~T~~  220 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEY-RPLEELLRESDFVSLHVPLTKETYH  220 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEe-cCHHHHHhhCCEEEEeCCCChHHhh
Confidence            479999999999999999999999999999986543 223345543 4899999999999999998776554

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.66  E-value=2.8e-07  Score=73.14  Aligned_cols=167  Identities=16%  Similarity=0.188  Sum_probs=113.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC--------------CcccCCHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG--------------ATVGGSPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g--------------~~~~~~~~~~~~~   56 (257)
                      ||+|+|.|.+|..+|..|++.|++|.+||+.++.+...           -+.|              +..++++.|++++
T Consensus         5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~   84 (313)
T KOG2305|consen    5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG   84 (313)
T ss_pred             ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence            79999999999999999999999999999988754332           1112              3457799999999


Q ss_pred             CceEEEccCChHHHHH------------------------------HHHhcCCcEEeccccCCccccccCcEEEEec---
Q 025163           57 CTITIGMLADPAAALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSA---  103 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~---  103 (257)
                      +=.|--|+|.+-..+.                              -+..+.-..+..|+-.+. .   -.++-++.   
T Consensus        85 Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPy-f---iPLvElVPaPw  160 (313)
T KOG2305|consen   85 AIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPY-F---IPLVELVPAPW  160 (313)
T ss_pred             hhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhhhhhhhhheeEecCCCCCc-c---cchheeccCCC
Confidence            8888889998766655                              111111233444443110 0   01122222   


Q ss_pred             CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163          104 GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP  179 (257)
Q Consensus       104 g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~  179 (257)
                      ..++.+++-+++.+.+|.+++.....-.+..+..+       -.+.++|.-.+....++...++..+++.|-+...
T Consensus       161 Tsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnri-------q~Ailne~wrLvasGil~v~dvD~VmS~GLG~RY  229 (313)
T KOG2305|consen  161 TSPDTVDRTRALMRSIGQEPVTLKREILGFALNRI-------QYAILNETWRLVASGILNVNDVDAVMSAGLGPRY  229 (313)
T ss_pred             CChhHHHHHHHHHHHhCCCCcccccccccceeccc-------cHHHHHHHHHHHHccCcchhhHHHHHhcCCCcch
Confidence            35788999999999999776666553333333322       2356678888988888888888888887755443

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.66  E-value=6.6e-08  Score=83.38  Aligned_cols=69  Identities=14%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|||||+|.||..+|+.|+ ..|.+|++||+++....   ..++....+++++++++|+|++|+|.....+.
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~  216 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHY  216 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence            68999999999999999995 45789999999865431   22345566899999999999999998765543

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.64  E-value=6e-06  Score=66.80  Aligned_cols=166  Identities=11%  Similarity=0.152  Sum_probs=104.8

Q ss_pred             CeEEEEcCChh--------------------HHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 025163            1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK   55 (257)
Q Consensus         1 mkI~iIG~G~m--------------------G~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~~~~~~   55 (257)
                      |||+|.|+|+-                    |..||-.++++||+|++.+.|.+     +.++..+.|+++++|..++++
T Consensus         2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~   81 (340)
T COG4007           2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE   81 (340)
T ss_pred             ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence            79999999974                    67799999999999999976643     567777789999999999999


Q ss_pred             cCceEEEccCChHHH-HH---------------------------------HHHhcCCcEEeccccCCccccccCcEEEE
Q 025163           56 KCTITIGMLADPAAA-LS---------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVIL  101 (257)
Q Consensus        56 ~~dvii~~v~~~~~~-~~---------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~  101 (257)
                      .+++.++.+|..... ..                                 +.+...+..-+++-.+-|...+++-+ ++
T Consensus        82 ~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~y-vi  160 (340)
T COG4007          82 HGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGHY-VI  160 (340)
T ss_pred             cceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCceE-EE
Confidence            999999999988332 22                                 11112233333222222333334433 33


Q ss_pred             ec--------CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHH
Q 025163          102 SA--------GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLL  168 (257)
Q Consensus       102 ~~--------g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~  168 (257)
                      .+        .+++..++..++.++.|+.+|.+.. .--+.+.=...++....+.++.+-..+..+ .|.+.+.+.
T Consensus       161 agr~t~g~elATeEQi~r~velaes~Gk~~yv~pa-dv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIe  235 (340)
T COG4007         161 AGRSTEGKELATEEQIERCVELAESTGKEVYVLPA-DVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIE  235 (340)
T ss_pred             eccCCCceeeccHHHHHHHHHHHHhcCCceEecCH-HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            32        1467778899999999998877654 211121111222333444555555555553 555554443

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.64  E-value=5.6e-08  Score=72.88  Aligned_cols=68  Identities=22%  Similarity=0.244  Sum_probs=55.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCC----C--cccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG----A--TVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g----~--~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++.|||+|.+|.+++..|.+.|.+ |++++|+.++++++.+.-    +  ....+..+...++|+||.|+|.+..
T Consensus        14 ~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen   14 RVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            789999999999999999999976 999999999999987641    1  2334555677899999999997643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=98.63  E-value=1.3e-06  Score=69.35  Aligned_cols=110  Identities=20%  Similarity=0.305  Sum_probs=81.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |+|++||+|.+|..+...+.+.  +++ |.+|||+.+++..+.+. +....++++|.+...|+++-|-......+-  ..
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~Av~e~~~~~   80 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEAVREYVPKI   80 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHHHHHHhHHH
Confidence            7999999999999999887753  355 88899999999887654 666668999999999999999886544433  33


Q ss_pred             HhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEe
Q 025163           75 TSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                      ...|++++-                +.+|  .|+...++++++.+.-+.+++..
T Consensus        81 L~~g~d~iV----------------~SVGALad~~l~erl~~lak~~~~rv~~p  118 (255)
T COG1712          81 LKAGIDVIV----------------MSVGALADEGLRERLRELAKCGGARVYLP  118 (255)
T ss_pred             HhcCCCEEE----------------EechhccChHHHHHHHHHHhcCCcEEEec
Confidence            344555422                2222  27888888888888888776554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.63  E-value=1.2e-07  Score=79.73  Aligned_cols=120  Identities=18%  Similarity=0.285  Sum_probs=83.2

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCC
Q 025163            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGG   79 (257)
Q Consensus         1 mkI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~   79 (257)
                      .+|+|||.| .||.+|+.+|.++|++|++|++...              ++.++++++|+||+|++.+..+.......|.
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~ik~Ga  225 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADWLKPGA  225 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhhccCCc
Confidence            379999996 9999999999999999999987532              7889999999999999999887776667788


Q ss_pred             cEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           80 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        80 ~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      .++|..+.....   .+. .- +.||-+ ++.+.+.-..+.+   .-|.+|.-....+..|++.
T Consensus       226 iVIDvgin~~~~---~g~-~k-l~GDvd-f~~~~~~a~~iTP---VPGGVGp~Tva~L~~N~~~  280 (301)
T PRK14194        226 VVIDVGINRIDD---DGR-SR-LVGDVD-FDSALPVVSAITP---VPGGVGPMTIAFLMKNTVT  280 (301)
T ss_pred             EEEEecccccCC---CCC-cc-eecccc-hHHHHhhcceecC---CCCchhHHHHHHHHHHHHH
Confidence            888877653211   111 01 223332 2334443332221   1244677777777777663

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.62  E-value=1.3e-07  Score=79.87  Aligned_cols=66  Identities=21%  Similarity=0.230  Sum_probs=57.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|.||..+++.|...|.+|++++|++++.+++.+.|....  .++.+.++++|+||.|+|..
T Consensus       153 ~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~  220 (287)
T TIGR02853       153 NVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPAL  220 (287)
T ss_pred             EEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChH
Confidence            7999999999999999999999999999999988877777675533  35667888999999999875

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.58  E-value=1.2e-07  Score=80.89  Aligned_cols=70  Identities=17%  Similarity=0.433  Sum_probs=55.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|||||+|.||..+|+.|...|++|.+|++++++......  .....+++++++++|+|++++|.......
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~  206 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVG  206 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHH
Confidence            47999999999999999999999999999997654321111  11235788999999999999998877665

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.58  E-value=1.5e-07  Score=80.70  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=55.8

Q ss_pred             eEEEEcCChhHHHHHHHHHH-C-CCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~-g~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +|+|||+|.||..++..+.. + ..+|++|+|++++.+++.+.    |  +..+.+++++++++|+|+.|++..
T Consensus       127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~  200 (314)
T PRK06141        127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST  200 (314)
T ss_pred             eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC
Confidence            69999999999999986664 3 47899999999998888664    4  556788999999999999888865

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.57  E-value=2.2e-07  Score=78.93  Aligned_cols=66  Identities=18%  Similarity=0.348  Sum_probs=54.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      .+|||||+|.||..+|+.|..-|++|.+|||+...      .+... ..+++++++++|+|++++|.....+.
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~  189 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG  189 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence            37999999999999999888889999999997432      23332 46899999999999999998876554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.50  E-value=7.1e-07  Score=77.56  Aligned_cols=90  Identities=19%  Similarity=0.271  Sum_probs=73.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCC---Ccc-------cCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---ATV-------GGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g---~~~-------~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||-|||+|.+|+..|..|+++| ++|++-||++++++++....   +++       ...+.+++++.|+||.|.|....
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999999 89999999999999997763   221       12445778899999999998877


Q ss_pred             HHH--HHHhcCCcEEeccccCCc
Q 025163           70 ALS--AITSKGGHFLEAPVSGSK   90 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~~pv~~~~   90 (257)
                      ...  .....|++|+|-.....+
T Consensus        82 ~~i~ka~i~~gv~yvDts~~~~~  104 (389)
T COG1748          82 LTILKACIKTGVDYVDTSYYEEP  104 (389)
T ss_pred             HHHHHHHHHhCCCEEEcccCCch
Confidence            765  566789999996654443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.49  E-value=4.8e-07  Score=76.13  Aligned_cols=122  Identities=20%  Similarity=0.302  Sum_probs=83.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEc-CCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKG   78 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~-r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g   78 (257)
                      .+|+||| .|.||.+||.+|.++|++|++|+ |++               +++++++.+|+||+|++.+..++..+...|
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~lk~G  223 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDWIKPG  223 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchheecCC
Confidence            3799999 99999999999999999999995 653               468888999999999999988777666678


Q ss_pred             CcEEeccccCCcc-ccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           79 GHFLEAPVSGSKQ-PAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        79 ~~~~~~pv~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ..++|..+..-+. ....|.. -++ ||-+ ++.+++.-..+..   .-|.+|.-....+..|++.
T Consensus       224 avVIDvGin~~~~~~~~~g~~-~l~-GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  283 (296)
T PRK14188        224 ATVIDVGINRIPAPEKGEGKT-RLV-GDVA-FAEAAEVAGAITP---VPGGVGPMTIACLLANTLT  283 (296)
T ss_pred             CEEEEcCCcccCCccccCCCc-eee-CCCC-HHHHHhhccEecC---CCCChhHHHHHHHHHHHHH
Confidence            8899987754211 1011210 122 4433 2344444333322   1244666677777777663

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.49  E-value=4.9e-07  Score=82.66  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=58.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|||||+|.||..+|+.|...|++|.+||+... .+...+.|+...++++|+++++|+|++++|.....+.
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~  209 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYIS-PERAEQLGVELVDDLDELLARADFITVHTPLTPETRG  209 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCC-hhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhcc
Confidence            3799999999999999999999999999998532 2333445776667899999999999999997765544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.48  E-value=5.1e-07  Score=82.59  Aligned_cols=70  Identities=17%  Similarity=0.273  Sum_probs=58.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|||||+|.||..+|+.|...|++|.+|||+... +.....|+... +++|+++.+|+|++|+|.......
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~  210 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRG  210 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhc
Confidence            47999999999999999999999999999996432 33345577666 899999999999999998765544

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.46  E-value=3.4e-07  Score=78.36  Aligned_cols=86  Identities=23%  Similarity=0.356  Sum_probs=64.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhcCceEEEccCChHH---HHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAA---ALSA   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~---~~~~   73 (257)
                      ++|+|||+|.||..+++.|...| ++|++++|++++.+.+++. |....  .+..+.+.++|+||.|++.+..   ....
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~  258 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIVERA  258 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHH
Confidence            58999999999999999999866 6899999999988777654 54322  2456777899999999998766   1212


Q ss_pred             HHh---cCCcEEeccc
Q 025163           74 ITS---KGGHFLEAPV   86 (257)
Q Consensus        74 ~~~---~g~~~~~~pv   86 (257)
                      +..   ++..++|..+
T Consensus       259 ~~~~~~~~~~viDlav  274 (311)
T cd05213         259 MKKRSGKPRLIVDLAV  274 (311)
T ss_pred             HhhCCCCCeEEEEeCC
Confidence            222   3456667554

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.46  E-value=1.8e-05  Score=65.75  Aligned_cols=70  Identities=24%  Similarity=0.320  Sum_probs=60.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ||+|||.|+-|.+-|.+|.++|.+|++--|..+. .+...+.|..+. +++|+++.+|+|++.+|+....+.
T Consensus        20 ~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~-~v~ea~k~ADvim~L~PDe~q~~v   90 (338)
T COG0059          20 KVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVY-TVEEAAKRADVVMILLPDEQQKEV   90 (338)
T ss_pred             eEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEee-cHHHHhhcCCEEEEeCchhhHHHH
Confidence            7999999999999999999999999988775554 677777787755 899999999999999999877665

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=98.46  E-value=4.4e-07  Score=78.10  Aligned_cols=67  Identities=21%  Similarity=0.263  Sum_probs=55.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CC--CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HG--ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|.+|...+..|...  ..+|.+|||++++.+.+.+    .|  +..+.+++++++++|+|++|+|+..
T Consensus       130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~  204 (325)
T TIGR02371       130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK  204 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC
Confidence            689999999999977777643  4689999999999887755    35  4567899999999999999998753

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.45  E-value=9.1e-06  Score=65.88  Aligned_cols=217  Identities=18%  Similarity=0.216  Sum_probs=129.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHH-HHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~-l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      |+++|||.|+|..++++.+.+.|.    ++..+..+...... +...|++++.+..+.++.+|+++++|+.....+.   
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svKp~~i~~vls~   80 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVKPQVIESVLSE   80 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeecchhHHHHhhc
Confidence            899999999999999999999884    56666554333344 7778998887778899999999999997655544   


Q ss_pred             ---------------------HHH-hcC--CcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeE-
Q 025163           73 ---------------------AIT-SKG--GHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAF-  124 (257)
Q Consensus        73 ---------------------~~~-~~g--~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~-  124 (257)
                                           .+. ..+  ...+. +|  ..+...+.+..++..+.  ..+..+.+++++..+|.-.. 
T Consensus        81 ~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmp--Ntp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~~~ev  158 (267)
T KOG3124|consen   81 IKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMP--NTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGLCEEV  158 (267)
T ss_pred             CccccccceEEEEEeecccHHHHHHhcCCCCceEEecC--CChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCcceeC
Confidence                                 000 000  11111 11  12334444443232322  34445778899998885321 


Q ss_pred             -------EeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc-CCCchhhh--ccCCcccCCCC-
Q 025163          125 -------FLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG-GIANPMFK--GKGPTMLQSNY-  193 (257)
Q Consensus       125 -------~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~-~~~s~~~~--~~~~~~~~~~~-  193 (257)
                             +.|-.|++-.       +..+++.++.+.   .-+.|++++..+++...+ .+...+..  ...|..++.+. 
T Consensus       159 pE~~iDavTgLsGSgPA-------y~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~Lkd~V~  228 (267)
T KOG3124|consen  159 PEKCIDAVTGLSGSGPA-------YVFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQLKDDVC  228 (267)
T ss_pred             cHHhhhHHhhccCCcHH-------HHHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHHhCCCC
Confidence                   1222233322       444445455444   667889988777766543 22222222  12234444443 


Q ss_pred             CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          194 APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       194 ~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                      +|+-+.       =+.+...++-|++.-+..++.+.-.++++-
T Consensus       229 SPgG~T-------I~glh~LE~ggfRs~linaVeaa~~r~~el  264 (267)
T KOG3124|consen  229 SPGGTT-------IYGLHALEKGGFRSGLINAVEAATKRAREL  264 (267)
T ss_pred             CCCcch-------HHHHHHHHhCCchhHHHHHHHHHHHHHHHh
Confidence            343221       124566777788888888888777777654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.45  E-value=9.5e-07  Score=75.00  Aligned_cols=69  Identities=23%  Similarity=0.225  Sum_probs=59.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      .|++|||.|.+|..++..|...|.+|++++|++++.+.....|.+..  .++.+.++++|+||.|+|....
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i  223 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVL  223 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhh
Confidence            47999999999999999999999999999999988887777787644  3566788899999999986543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.45  E-value=1.2e-05  Score=70.83  Aligned_cols=68  Identities=19%  Similarity=0.336  Sum_probs=56.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC------chhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~------~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|+|||+|+.|.+.|.+|...|++|++--|.      .+..+.+.+.|..+ .+++|+++.+|+|++++|+...
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt~q  110 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDKQH  110 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChHHH
Confidence            47999999999999999999999999954443      34556666678766 5799999999999999999853

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=98.42  E-value=6.1e-06  Score=68.69  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=63.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      |||+|||+ |.||..++..+.+. ++++. ++|+++++.......++....+++++++++|+|+.++|+....+.  ...
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~~~~~~~~al   81 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEATLENLEFAL   81 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHHHHHHHHHHH
Confidence            79999998 99999999998864 57754 478887765544333566778898888889999988876665554  555


Q ss_pred             hcCCcEEecc
Q 025163           76 SKGGHFLEAP   85 (257)
Q Consensus        76 ~~g~~~~~~p   85 (257)
                      ..|.+++-+|
T Consensus        82 ~~G~~vvigt   91 (257)
T PRK00048         82 EHGKPLVIGT   91 (257)
T ss_pred             HcCCCEEEEC
Confidence            6777766443

>PLN02928 oxidoreductase family protein

Probab=98.42  E-value=9.6e-07  Score=76.58  Aligned_cols=71  Identities=18%  Similarity=0.120  Sum_probs=54.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH------------HHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l------------~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|.||..+|+.|...|.+|++|||+..+....            ...+. ...+++++++++|+|++++|...
T Consensus       160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~  238 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK  238 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence            479999999999999999999999999999974332111            11112 34589999999999999999775


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       239 ~T~~  242 (347)
T PLN02928        239 ETAG  242 (347)
T ss_pred             Hhhc
Confidence            5443

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=98.42  E-value=9.1e-06  Score=66.93  Aligned_cols=108  Identities=14%  Similarity=0.193  Sum_probs=77.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---Ce-EEEEcCCchhHHHHHHCCCcccCCHHHH-hhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g---~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~--~   73 (257)
                      +||+|||+|.||..++..|.+.+   ++ +.+++|++++.+.+.+. ..+..|++++ ...+|+|+-|-......+-  .
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~~~   81 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQQAIAEHAEG   81 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCHHHHHHHHHH
Confidence            58999999999999999987642   44 45578888888888765 7788899996 5889999999886654443  3


Q ss_pred             HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEE
Q 025163           74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                      +...|..++-.                .+|  .|++..+++++..+.-+.+++.
T Consensus        82 iL~~g~dlvv~----------------SvGALaD~~~~~~l~~~A~~~g~~i~i  119 (267)
T PRK13301         82 CLTAGLDMIIC----------------SAGALADDALRARLIAAAEAGGARIRV  119 (267)
T ss_pred             HHhcCCCEEEE----------------ChhHhcCHHHHHHHHHHHHhCCCEEEE
Confidence            33445444211                112  2777788888888887766544

>PLN00203 glutamyl-tRNA reductase

Probab=98.38  E-value=7.2e-07  Score=80.91  Aligned_cols=68  Identities=19%  Similarity=0.247  Sum_probs=56.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC--CCc----ccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~--g~~----~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      +|+|||+|.||..+++.|...|. +|++++|++++.+.+.+.  +..    ...+..+++.++|+||.|++.+..
T Consensus       268 kVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p  342 (519)
T PLN00203        268 RVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP  342 (519)
T ss_pred             EEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence            79999999999999999999996 699999999999988764  322    234666788999999999875543

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.38  E-value=8.9e-07  Score=77.38  Aligned_cols=63  Identities=19%  Similarity=0.217  Sum_probs=51.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|+||..+++.|...|++|.+||+.....     .+.....++++++++||+|++++|...
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~  179 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTK  179 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCC
Confidence            479999999999999999999999999999854321     122334589999999999999999654

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.38  E-value=1.2e-06  Score=74.74  Aligned_cols=66  Identities=12%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH----HHHC--------CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH--------GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~----l~~~--------g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..+|..|+.+|+ +|+++|++++..+.    +.+.        .++.+.+.++ ++++|+||+|++.+
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            799999999999999999999887 89999997664331    1111        1233467766 68999999998854

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.36  E-value=1.3e-06  Score=74.62  Aligned_cols=66  Identities=18%  Similarity=0.276  Sum_probs=51.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHH----HHHCC-----Cc-ccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----AT-VGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~----l~~~g-----~~-~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.+|..+|..|+.+|  ++|.++|+++++++.    +....     .. .+.+. +.++++|++|+|++.+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~   78 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN   78 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence            89999999999999999999999  689999999876653    33211     11 12344 5678999999998764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.35  E-value=1.4e-06  Score=74.66  Aligned_cols=71  Identities=23%  Similarity=0.267  Sum_probs=58.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|.+|+.+|..+..-|.+|.+||+...+- .....+.....+++++++.||+|.+.+|-......
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            479999999999999999999999999999933321 22234567778999999999999999998766554

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.35  E-value=1.9e-06  Score=73.73  Aligned_cols=70  Identities=21%  Similarity=0.269  Sum_probs=56.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|.+|.++|+++..-|.+|..|+|++. -+.-.+.+.+... ++|++++||+|.+.+|.......
T Consensus       147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~h  216 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRH  216 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhh
Confidence            4799999999999999999977889999999875 2323333455554 99999999999999998776555

>COG5495 Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=1.4e-05  Score=63.74  Aligned_cols=168  Identities=14%  Similarity=0.164  Sum_probs=111.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |.++|||.|..|.+...+-...+..+..+ .|++++.+.|.+.-+-...+.+...+-.+++|+-||+....+.       
T Consensus        11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~~~s~vaa~~~~r   90 (289)
T COG5495          11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDALYSGVAATSLNR   90 (289)
T ss_pred             eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHHHHHHHHHhcccC
Confidence            56899999999999655544444454433 7888888887765332333343333455788888887733333       


Q ss_pred             ---------------H---HHhcCCcEEe-cc---ccCCccccc--cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 ---------------A---ITSKGGHFLE-AP---VSGSKQPAE--TGQLVILSAGEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 ---------------~---~~~~g~~~~~-~p---v~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                                     .   +...|..-.+ .|   +++.+...+  .+++..+..+|.--+..++.+...+|.+.+.+-+
T Consensus        91 pg~iv~HcSga~~~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~  170 (289)
T COG5495          91 PGTIVAHCSGANGSGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVRE  170 (289)
T ss_pred             CCeEEEEccCCCchhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeech
Confidence                           1   1122322222 22   223333333  4555555567777788899999999999888876


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Q 025163          129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD-PRTLLD  169 (257)
Q Consensus       129 ~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~-~~~~~~  169 (257)
                       +.-.+.....|...+.....+.++..+.+..|.| ++.+.+
T Consensus       171 -~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~  211 (289)
T COG5495         171 -EARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVE  211 (289)
T ss_pred             -hHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeee
Confidence             7777888888888888899999999999999987 444433

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.34  E-value=9.2e-07  Score=78.78  Aligned_cols=66  Identities=11%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             CeEEEEcCChhHHHHHH--HH----HHCCCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~--~L----~~~g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+||.+++.  .+    ..+|++|.+||+++++++.....            .+..++|+.++++++|+||.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            79999999999998665  34    34578999999999887765431            13457788899999999999


Q ss_pred             ccCC
Q 025163           63 MLAD   66 (257)
Q Consensus        63 ~v~~   66 (257)
                      +++.
T Consensus        81 ai~~   84 (423)
T cd05297          81 TIQV   84 (423)
T ss_pred             eeEe
Confidence            9985

linked to 3D####ucture

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.32  E-value=1.4e-06  Score=70.98  Aligned_cols=72  Identities=18%  Similarity=0.346  Sum_probs=56.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH--CCCcc----cCC---HHHH-hhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV----GGS---PAEV-IKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~--~g~~~----~~~---~~~~-~~~~dvii~~v~~~~~~   70 (257)
                      |+|.|||+|.+|..+|+.|.+.||+|++.+++++++++...  ....+    .++   +.++ +.++|+++.++.++...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~~N   80 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDEVN   80 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCHHH
Confidence            89999999999999999999999999999999999988544  33222    112   2333 46899999999887654


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      ..
T Consensus        81 ~i   82 (225)
T COG0569          81 SV   82 (225)
T ss_pred             HH
Confidence            44

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.31  E-value=1.2e-06  Score=77.98  Aligned_cols=68  Identities=26%  Similarity=0.424  Sum_probs=56.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      +|+|||+|.||..++..|...| .+|++++|++++.+.+.+. |..  ...+..+++.++|+||.|++.+..
T Consensus       182 ~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~  253 (417)
T TIGR01035       182 KALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP  253 (417)
T ss_pred             EEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence            7999999999999999999999 7899999999988777653 432  223566778899999999976654

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=98.30  E-value=2.2e-05  Score=65.68  Aligned_cols=82  Identities=16%  Similarity=0.209  Sum_probs=56.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEEE-EcCC--chhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRT--LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r~--~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||..+++.+.+. +.++.. +++.  .++.......+....+|++++..+.|+|+.|+|.....+.  ..
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~~e~~~~a   81 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAALKEHVVPI   81 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHHHHHHHHH
Confidence            7999999999999999999876 455443 3442  2222222223667788888874568999999998766554  44


Q ss_pred             HhcCCcEE
Q 025163           75 TSKGGHFL   82 (257)
Q Consensus        75 ~~~g~~~~   82 (257)
                      ...|.+++
T Consensus        82 L~aGk~Vv   89 (265)
T PRK13303         82 LKAGIDCA   89 (265)
T ss_pred             HHcCCCEE
Confidence            45666654

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=98.30  E-value=1.8e-06  Score=75.54  Aligned_cols=68  Identities=29%  Similarity=0.456  Sum_probs=57.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+.|||+|.||...|++|.++| .+|++.||+.++.++|++. |..  ...+..+.+.++|+||+|+..+..
T Consensus       180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~  251 (414)
T COG0373         180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHP  251 (414)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCcc
Confidence            6899999999999999999999 6799999999999999875 533  334566778899999999865544

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.29  E-value=2.3e-06  Score=73.18  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=48.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHH----HC----C--Cc--ccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH----G--AT--VGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~----~~----g--~~--~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||..+|..++..|+ +|.++|+++++.+...    +.    +  .+  ...+. +.++++|+||+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            689999999999999999999876 9999999887654321    11    1  12  23455 45789999999974

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.29  E-value=1.7e-06  Score=65.24  Aligned_cols=66  Identities=17%  Similarity=0.306  Sum_probs=50.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~----------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+ |.+|..++..|...+.  ++.++|+++++++-....          .........+.++++|+|+++.-.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence            89999999 9999999999998874  799999997765433211          123334556777899999998743

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.28  E-value=8.6e-06  Score=68.07  Aligned_cols=116  Identities=20%  Similarity=0.265  Sum_probs=80.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      +|+|||. |.||.+|+..|.++|++|++|...              +.++.+.++++|+||++++.+..++..+-..|..
T Consensus       160 ~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~ik~Gav  225 (284)
T PRK14179        160 HAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEFVKEGAV  225 (284)
T ss_pred             EEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHHccCCcE
Confidence            7999999 999999999999999999999321              1268889999999999999998877766677888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    +.||-+ ++.+.+.-+.+..   .-|.+|.-...-+..|++.
T Consensus       226 VIDvgin~~~----~gk----l~GDVd-f~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  276 (284)
T PRK14179        226 VIDVGMNRDE----NGK----LIGDVD-FDEVAEVASYITP---VPGGVGPMTITMLMEQTYQ  276 (284)
T ss_pred             EEEecceecC----CCC----eecCcc-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHH
Confidence            8887765321    122    224333 2334443332222   1234666666667777653

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=98.27  E-value=1.4e-06  Score=67.10  Aligned_cols=67  Identities=22%  Similarity=0.197  Sum_probs=52.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+ |..|+.+.+-..++||+|+.+-||++++..+...     .+.-.++..+.+.+-|+||.+....
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            99999998 9999999999999999999999999998664221     1111223446677899999987544

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.26  E-value=9.2e-06  Score=63.01  Aligned_cols=74  Identities=20%  Similarity=0.277  Sum_probs=58.5

Q ss_pred             eEEEEcCChh-HHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~m-G~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      +|.|||.|.| |..+++.|.+.|.+|++.+|+.              .++.+.++++|+||.|++.+.......-..+..
T Consensus        46 ~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~v  111 (168)
T cd01080          46 KVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAV  111 (168)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCceecHHHccCCeE
Confidence            7899999997 8889999999999999999973              255678889999999999876444333345677


Q ss_pred             EEeccccCC
Q 025163           81 FLEAPVSGS   89 (257)
Q Consensus        81 ~~~~pv~~~   89 (257)
                      ++|..+...
T Consensus       112 iIDla~prd  120 (168)
T cd01080         112 VIDVGINRV  120 (168)
T ss_pred             EEEccCCCc
Confidence            888776543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=98.26  E-value=3e-05  Score=66.03  Aligned_cols=117  Identities=9%  Similarity=0.202  Sum_probs=75.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCc-hhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~-~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +||+|||+|+||...+..+.++ +.++. +|+|++ +++.  ...+.....+..+...+.|+|++|+|+....+.  .+.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~~~L   81 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQAPYF   81 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHHHHH
Confidence            4899999999999999999876 67865 479985 4333  223444555777777889999999998766555  445


Q ss_pred             hcCCcEEecc-ccCCc--------cccc-cCcEEEEecC-ChhhHHHHHHHHHHh
Q 025163           76 SKGGHFLEAP-VSGSK--------QPAE-TGQLVILSAG-EKALYDEAISALNVI  119 (257)
Q Consensus        76 ~~g~~~~~~p-v~~~~--------~~~~-~~~~~~~~~g-~~~~~~~~~~~l~~~  119 (257)
                      ..|+..++.- .....        ..++ .+...++..| |+..+...+-+.+.+
T Consensus        82 ~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~GwDPG~~si~r~~~ea~  136 (324)
T TIGR01921        82 AQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVISTGWDPGMFSINRVYGEAV  136 (324)
T ss_pred             HcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEECCCCcChHHHHHHHHhcc
Confidence            6788877742 11111        1222 2455555545 555554444444444

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.26  E-value=3.3e-06  Score=72.11  Aligned_cols=67  Identities=15%  Similarity=0.224  Sum_probs=51.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC--------C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~--------g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +||+|||+|.+|..++..|+..|  ++|.++||++++++.+...        +  ........+.++++|+||+++..+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence            58999999999999999999999  6899999999887655431        1  122223334578999999998654

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.25  E-value=2e-06  Score=76.67  Aligned_cols=70  Identities=30%  Similarity=0.455  Sum_probs=56.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcc--cCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~--~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ++|+|||+|.||..++..|...|. +|++++|++++.+.+.+. |...  ..+..+.+.++|+||.|++.+...
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~  256 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPI  256 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcE
Confidence            479999999999999999999997 799999999998877654 4332  234556778999999999876543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.25  E-value=4.1e-06  Score=71.44  Aligned_cols=67  Identities=16%  Similarity=0.202  Sum_probs=55.9

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC----CCcc-cCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~----g~~~-~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+.    +... ..+.++++.++|+|+.|+|+..
T Consensus       127 ~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~  200 (304)
T PRK07340        127 DLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT  200 (304)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC
Confidence            69999999999999999975 45 4799999999998887653    3333 4688889999999999999873

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=98.25  E-value=3.1e-06  Score=73.85  Aligned_cols=63  Identities=17%  Similarity=0.162  Sum_probs=50.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|+||+.+|+.|..-|.+|.+||+.....    ... ....++++++++||+|++++|-..
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~  179 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFK  179 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCC
Confidence            479999999999999999999999999999743211    111 134589999999999999998543

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=98.25  E-value=2.4e-06  Score=75.65  Aligned_cols=86  Identities=19%  Similarity=0.253  Sum_probs=64.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-C-Cc--ccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-AT--VGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g-~~--~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      .||.|||+|.||..++..|.+.|. +|++++|+.++.+.+.+. + ..  ..++..+.+.++|+||.|++.+..+-.  .
T Consensus       182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi~~~~  261 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIVTCKY  261 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeECHHH
Confidence            379999999999999999999995 799999999999988874 3 22  224456678899999999987755322  2


Q ss_pred             HHhcCCcEEeccc
Q 025163           74 ITSKGGHFLEAPV   86 (257)
Q Consensus        74 ~~~~g~~~~~~pv   86 (257)
                      ...+...++|-.+
T Consensus       262 ~~~~~~~~iDLav  274 (414)
T PRK13940        262 VGDKPRVFIDISI  274 (414)
T ss_pred             hCCCCeEEEEeCC
Confidence            2233445666444

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.24  E-value=4.5e-06  Score=71.67  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=55.1

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|++|..+|+.+. .-|.+|.+|+|.... +.....|... .++++++++||+|++++|-......
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhh
Confidence            37999999999999999997 678899999986432 2223345554 4899999999999999998766554

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.24  E-value=3.4e-06  Score=74.73  Aligned_cols=68  Identities=16%  Similarity=0.232  Sum_probs=55.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|.+|..+|+.+..-|.+|.+||+++..    ...+.....+++|+++.||+|++++|.......
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~  219 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKN  219 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhh
Confidence            37999999999999999999999999999986432    112345566899999999999999998766554

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.24  E-value=5.9e-06  Score=63.07  Aligned_cols=66  Identities=23%  Similarity=0.260  Sum_probs=51.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|+|.|..|..+|+.|...|.+|++++++|-+.-+....|..+. +.++++..+|++|.++-...
T Consensus        25 ~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~   90 (162)
T PF00670_consen   25 RVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKD   90 (162)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSS
T ss_pred             EEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCcc
Confidence            6889999999999999999999999999999988877777898776 78999999999999887654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08291 ectoine utilization protein EutC; Validated

Probab=98.23  E-value=4.1e-06  Score=72.32  Aligned_cols=68  Identities=19%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++++|||+|.+|.+.+..|.. .+ .+|.+|+|++++.+++.+.     |+.  ...++++++.++|+|+.|+|...
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~  209 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE  209 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC
Confidence            479999999999999988885 44 5799999999999888652     443  35788899999999999998753

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=98.21  E-value=4.7e-06  Score=71.80  Aligned_cols=67  Identities=16%  Similarity=0.312  Sum_probs=56.0

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|.+|...+..|.. .+ .+|++|+|++++.+++.+.     |+.  ..++++++++++|+|+.|+|...
T Consensus       131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~  206 (326)
T TIGR02992       131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET  206 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC
Confidence            68999999999999999974 56 4699999999998887652     443  36788899999999999999753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.21  E-value=1.4e-05  Score=71.26  Aligned_cols=132  Identities=17%  Similarity=0.121  Sum_probs=83.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHhcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITSKGG   79 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~~g~   79 (257)
                      +|.|||.|.+|..+|..|.+.|++|+++|++++..+......-....+.....+++|++|.+.+.+.....  .....|+
T Consensus         5 ~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g~   84 (418)
T PRK00683          5 RVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASHI   84 (418)
T ss_pred             eEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCCC
Confidence            69999999999999999999999999999987654321110001122344444678999888754422221  4556777


Q ss_pred             cEEeccccCCccc-cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163           80 HFLEAPVSGSKQP-AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA  133 (257)
Q Consensus        80 ~~~~~pv~~~~~~-~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~  133 (257)
                      ..++-+...-... ....+..-+.|  |...+.+.+..+|+..+......|++|...
T Consensus        85 ~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~~~~~GniG~p~  141 (418)
T PRK00683         85 PVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIPAFAMGNIGIPI  141 (418)
T ss_pred             cEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCCeEEECCcCHHH
Confidence            7666443211110 11122223333  345667789999999998777788877553

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.19  E-value=1.5e-05  Score=70.55  Aligned_cols=69  Identities=19%  Similarity=0.093  Sum_probs=59.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +++|+|+|.+|..++..|...|.+|+++|+++.+.......|..+ .+.+++++.+|+||.|+.+.....
T Consensus       214 ~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~  282 (425)
T PRK05476        214 VVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVIT  282 (425)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHH
Confidence            689999999999999999999999999999998876666667664 467888999999999987766554

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=98.18  E-value=1e-05  Score=70.04  Aligned_cols=117  Identities=18%  Similarity=0.194  Sum_probs=85.3

Q ss_pred             CeEEEEcCChhH-HHHHHHHHHCCC---eEEEEcCCchhHHHHHHC-CC-cccCCHHHHhhc--CceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMG-KAISMNLLRNGF---KVTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG-~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~~--~dvii~~v~~~~~~~~   72 (257)
                      |||||||+|.++ ......+.+.+.   -|.++|+++++++.+.+. |+ ...+|+++++++  .|+|++|+|+....+.
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~   83 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL   83 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence            589999999555 568888888763   377789999999888765 66 478899998875  6999999999988887


Q ss_pred             --HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH
Q 025163           73 --AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                        .....|.+ +++-|+......+.       +....++++-+   ...+.++++++.
T Consensus        84 ~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~  141 (342)
T COG0673          84 ALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELID  141 (342)
T ss_pred             HHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHh
Confidence              44456665 67888887755333       22334555543   245667788777

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=98.18  E-value=6.1e-05  Score=63.02  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=75.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCeE-EEEcCC-chhH----HHHHH---CCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GFKV-TVWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~~V-~~~~r~-~~~~----~~l~~---~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+| +|.||..+++.+.+. ++++ .++||+ +++.    ..+..   .|+...++++++...+|+||.|+++...
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~~~   81 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPEGV   81 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChHHH
Confidence            6999999 699999999999864 6774 446854 2221    12211   3566678888875578999999987766


Q ss_pred             HHH--HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHH
Q 025163           70 ALS--AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLV  138 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~  138 (257)
                      .+.  .....|.+++-...                +-+.+..+++.+.-+.-+..+++..+  +|...+.++.
T Consensus        82 ~~~~~~al~~g~~vVigtt----------------g~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~  138 (266)
T TIGR00036        82 LNHLKFALEHGVRLVVGTT----------------GFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLL  138 (266)
T ss_pred             HHHHHHHHHCCCCEEEECC----------------CCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHH
Confidence            555  45566766543221                11444555666665554444555444  4444444433

>PRK04148 hypothetical protein; Provisional

Probab=98.18  E-value=3e-05  Score=57.45  Aligned_cols=89  Identities=16%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      +||.+||+| -|..+|..|.+.|++|+..|.+++.++.+++.+..+     ....-+.-+++|+|..+=|.++....   
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~   96 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE   96 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH
Confidence            479999999 999999999999999999999999999888876543     22334567899999999998877665   


Q ss_pred             HHHhcCCcEEeccccCCc
Q 025163           73 AITSKGGHFLEAPVSGSK   90 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~~~~   90 (257)
                      ..+..++.++=-|.++..
T Consensus        97 la~~~~~~~~i~~l~~e~  114 (134)
T PRK04148         97 LAKKINVPLIIKPLSGEE  114 (134)
T ss_pred             HHHHcCCCEEEEcCCCCC
Confidence            444557777777776554

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=98.17  E-value=7.7e-06  Score=69.62  Aligned_cols=70  Identities=24%  Similarity=0.202  Sum_probs=60.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|+|+|+|++|..+|++|..-|..+..+.|++...+...+.+.. ..|..+.+.++|+|++|+|.......
T Consensus       164 ~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~  233 (336)
T KOG0069|consen  164 TVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRH  233 (336)
T ss_pred             EEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHH
Confidence            79999999999999999999886677778988877777776666 55888999999999999998877665

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=98.16  E-value=7.2e-06  Score=60.18  Aligned_cols=84  Identities=15%  Similarity=0.185  Sum_probs=57.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCC-e-EEEEcCCchhHHHHHHC--------CCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGF-K-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~-~-V~~~~r~~~~~~~l~~~--------g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ||+||| +|++|..+.+.|.++-+ + +.+++++.+.-+.+...        ...+.....+...++|+||+|+|+....
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            799999 89999999999999643 4 55566665333333322        1223332334458999999999988776


Q ss_pred             HH--HHHhcCCcEEecc
Q 025163           71 LS--AITSKGGHFLEAP   85 (257)
Q Consensus        71 ~~--~~~~~g~~~~~~p   85 (257)
                      +.  .+...|+.++|..
T Consensus        81 ~~~~~~~~~g~~ViD~s   97 (121)
T PF01118_consen   81 ELAPKLLKAGIKVIDLS   97 (121)
T ss_dssp             HHHHHHHHTTSEEEESS
T ss_pred             HHHHHHhhCCcEEEeCC
Confidence            65  6678899888854

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.15  E-value=5.9e-06  Score=70.65  Aligned_cols=67  Identities=19%  Similarity=0.163  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|.+|..+|+.+..-|.+|..|||.....    ..+.. ..+++++++.||+|++++|-......
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~  212 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKN  212 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhc
Confidence            379999999999999999998899999999964321    22333 34899999999999999997765443

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=98.15  E-value=7.7e-06  Score=68.62  Aligned_cols=66  Identities=27%  Similarity=0.399  Sum_probs=52.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHH-hhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~-~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|.+|.+++..|.+.|++|++++|++++.+.+.+.    +.....+..+. ..++|+||.|+|..
T Consensus       119 ~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~g  189 (270)
T TIGR00507       119 RVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAG  189 (270)
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCC
Confidence            68999999999999999999999999999999988877653    32222234333 35799999999975

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=98.14  E-value=7.8e-06  Score=69.54  Aligned_cols=67  Identities=7%  Similarity=0.207  Sum_probs=56.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|..|...+..+... . .+|.+|+|++++.+++.+.     |  +.++.++++++.++|+|+.|+++..
T Consensus       119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~  194 (301)
T PRK06407        119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT  194 (301)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence            589999999999999988864 2 3799999999998887543     4  4557899999999999999999764

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.14  E-value=1e-05  Score=72.04  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=57.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      +++|||.|.+|..+|..|...|.+|+++++++.+.......|.... +.+++++.+|+|++|+.+....
T Consensus       256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~-~leell~~ADIVI~atGt~~iI  323 (476)
T PTZ00075        256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVV-TLEDVVETADIFVTATGNKDII  323 (476)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceec-cHHHHHhcCCEEEECCCccccc
Confidence            6899999999999999999999999999999887655555676543 7889999999999998655443

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.11  E-value=1.7e-05  Score=69.74  Aligned_cols=70  Identities=24%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++|+|+|.+|..+++.+...|.+|+++++++.+.......|..+. +.+++++++|++|.++........
T Consensus       197 ~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~  266 (406)
T TIGR00936       197 TVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG  266 (406)
T ss_pred             EEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH
Confidence            6899999999999999999999999999999988766666776544 567888999999999887665543

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=98.11  E-value=9.2e-06  Score=59.89  Aligned_cols=80  Identities=31%  Similarity=0.500  Sum_probs=54.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH-CCCe-EEEEcCCch-h----HHHHH---HCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLR-NGFK-VTVWNRTLS-K----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~-~g~~-V~~~~r~~~-~----~~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+|+ |.||..+++.+.+ .+++ |-+++|+++ .    +-++.   ..|+.+.++++++.+.+|++|-++. +..
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~   79 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA   79 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH
Confidence            89999999 9999999999998 6778 455688762 1    11221   2467788999999999999998883 334


Q ss_pred             HHH---HHHhcCCcE
Q 025163           70 ALS---AITSKGGHF   81 (257)
Q Consensus        70 ~~~---~~~~~g~~~   81 (257)
                      ...   ....+|..+
T Consensus        80 ~~~~~~~~~~~g~~~   94 (124)
T PF01113_consen   80 VYDNLEYALKHGVPL   94 (124)
T ss_dssp             HHHHHHHHHHHT-EE
T ss_pred             hHHHHHHHHhCCCCE
Confidence            333   344445544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=98.09  E-value=8.9e-05  Score=67.49  Aligned_cols=132  Identities=17%  Similarity=0.228  Sum_probs=86.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC--CHHHHhhcCceEEEcc--CChHHHHHHHHhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGML--ADPAAALSAITSK   77 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~~~~~~   77 (257)
                      +|.|+|+|..|.+.++.|...|++|+++|++++..+.+.+.|+....  ...+.++++|+||.+.  |.....-...+..
T Consensus        14 ~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~~   93 (488)
T PRK03369         14 PVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAAA   93 (488)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHHC
Confidence            79999999999999999999999999999887777667667875532  2334567889998864  4332222255667


Q ss_pred             CCcEEeccccCCcccc----c-cCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163           78 GGHFLEAPVSGSKQPA----E-TGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA  133 (257)
Q Consensus        78 g~~~~~~pv~~~~~~~----~-~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~  133 (257)
                      |+.++.-.-.......    . .....-+.|  |...+.+.+..+|+..+.+....|++|...
T Consensus        94 gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p~  156 (488)
T PRK03369         94 GVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSPV  156 (488)
T ss_pred             CCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchHH
Confidence            7776653222111100    0 112233333  344556678899998887777777776543

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=98.08  E-value=3.8e-05  Score=64.52  Aligned_cols=83  Identities=14%  Similarity=0.230  Sum_probs=61.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchh--HHHHHHCCCccc-CCHHHHhh--cCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSK--CDELVAHGATVG-GSPAEVIK--KCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~~-~~~~~~~~--~~dvii~~v~~~~~~~~-   72 (257)
                      +||+|||+|.||..++..+.+. +.++. ++++++++  ++...+.|+... .+.+++++  +.|+|++|+|+..+.+. 
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a   81 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA   81 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence            5899999999999988777753 56654 56888875  333445677644 47787775  57899999999988776 


Q ss_pred             -HHHhcCCcEEe
Q 025163           73 -AITSKGGHFLE   83 (257)
Q Consensus        73 -~~~~~g~~~~~   83 (257)
                       .....|.+.++
T Consensus        82 ~~al~aGk~VId   93 (285)
T TIGR03215        82 RLLAELGKIVID   93 (285)
T ss_pred             HHHHHcCCEEEE
Confidence             56677877766

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.08  E-value=2.1e-05  Score=69.40  Aligned_cols=70  Identities=19%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++|+|+|.+|..++..+...|.+|+++++++.+.+.....|.... +.+++++.+|+||.|+........
T Consensus       204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~  273 (413)
T cd00401         204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG  273 (413)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH
Confidence            6899999999999999999999999999999999888888887544 567888899999999987765543

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.08  E-value=1.7e-05  Score=69.96  Aligned_cols=81  Identities=31%  Similarity=0.461  Sum_probs=59.6

Q ss_pred             EEEEcCChhHHHHHHHHHHCC-C-eEEEEcCCchhHHHHHHC--C--Ccc----cC---CHHHHhhcCceEEEccCChHH
Q 025163            3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--G--ATV----GG---SPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g-~-~V~~~~r~~~~~~~l~~~--g--~~~----~~---~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |.|||+|.+|..+++.|++++ + +|++.||+.++++++.+.  +  +..    ..   ++.++++++|+||-|+|....
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~~~   80 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPFFG   80 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGGGH
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccchh
Confidence            789999999999999999987 4 899999999999988753  2  111    11   355678899999999987644


Q ss_pred             HHH--HHHhcCCcEEe
Q 025163           70 ALS--AITSKGGHFLE   83 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~   83 (257)
                      ...  .....|++|+|
T Consensus        81 ~~v~~~~i~~g~~yvD   96 (386)
T PF03435_consen   81 EPVARACIEAGVHYVD   96 (386)
T ss_dssp             HHHHHHHHHHT-EEEE
T ss_pred             HHHHHHHHHhCCCeec
Confidence            333  56678999999

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=98.05  E-value=1.5e-05  Score=67.23  Aligned_cols=66  Identities=21%  Similarity=0.278  Sum_probs=53.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----C-Cc--ccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-AT--VGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g-~~--~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|||+|.+|.+++..|.+.|. +|+++||+.++.+.+.+.     . ..  ...+..+.++++|+||-|+|..
T Consensus       129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G  203 (284)
T PRK12549        129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG  203 (284)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence            68999999999999999999997 799999999999888652     1 11  1234445667899999999865

>PRK06823 ornithine cyclodeaminase; Validated

Probab=98.04  E-value=1.5e-05  Score=68.24  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=55.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CCC--cccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HGA--TVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g~--~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|..+...+..+...  -.+|.+|+|++++.+++.+    .+.  .++++.+++++++|+|+.|+++..
T Consensus       130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~  204 (315)
T PRK06823        130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE  204 (315)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC
Confidence            589999999999999988864  2479999999999887654    243  347889999999999999998664

>PLN02494 adenosylhomocysteinase

Probab=98.02  E-value=3.7e-05  Score=68.48  Aligned_cols=67  Identities=16%  Similarity=0.155  Sum_probs=57.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      +++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+||.++.+...
T Consensus       256 tVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~v  322 (477)
T PLN02494        256 VAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDI  322 (477)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccc
Confidence            6899999999999999999999999999999887666666676654 678889999999998876654

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.02  E-value=2.2e-05  Score=67.71  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|.+|...+..+.. .+ .+|.+|+|++++.+++.+.     ++  ....+.+++++++|+|+.|+|...
T Consensus       129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~  204 (325)
T PRK08618        129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT  204 (325)
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC
Confidence            68999999999999888764 34 4799999999998887652     43  346788999999999999999763

>PRK06046 alanine dehydrogenase; Validated

Probab=98.02  E-value=1.7e-05  Score=68.37  Aligned_cols=66  Identities=26%  Similarity=0.394  Sum_probs=54.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|.+|...+..|... + ..|.+|||++++.+++.+.     +  +....+++++++ +|+|++|+|+..
T Consensus       131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~  205 (326)
T PRK06046        131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK  205 (326)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC
Confidence            689999999999999999854 3 3699999999998887653     4  345678889887 999999999753

>PRK06932 glycerate dehydrogenase; Provisional

Probab=98.02  E-value=2e-05  Score=67.51  Aligned_cols=66  Identities=17%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++||||+|.+|..+|+.+..-|.+|..|++....  ..   .. ...+++++++.||+|++++|-......
T Consensus       148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~  213 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQN  213 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhc
Confidence            37999999999999999999889999999986431  11   11 134899999999999999997766544

>PRK06487 glycerate dehydrogenase; Provisional

Probab=98.02  E-value=2.1e-05  Score=67.45  Aligned_cols=64  Identities=14%  Similarity=0.079  Sum_probs=52.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++||||+|.+|..+|+.+..-|.+|.+|+|....      .... ..+++++++.||+|++++|-......
T Consensus       150 tvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~  213 (317)
T PRK06487        150 TLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRH  213 (317)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhc
Confidence            7999999999999999999889999999986321      1112 24799999999999999997766544

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=98.02  E-value=1.4e-05  Score=72.04  Aligned_cols=70  Identities=17%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCccc----C---CHHHH-hhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG----G---SPAEV-IKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~~----~---~~~~~-~~~~dvii~~v~~~~~~   70 (257)
                      |+|.|+|+|.+|..++..|.+.|++|+++++++++++.+.+ .|....    .   .+.++ ++++|.+|++++++..-
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~n   79 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDETN   79 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHHH
Confidence            89999999999999999999999999999999999998876 443221    1   22333 56899999999876543

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=98.01  E-value=1.9e-05  Score=71.50  Aligned_cols=67  Identities=24%  Similarity=0.352  Sum_probs=52.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHH--HhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAE--VIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~--~~~~~dvii~~v~~~~   68 (257)
                      +++.|+|+|.+|.+++..|.+.|++|++++|+.++.+.+.+. +.... +..+  .+.++|+||.|+|...
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~-~~~~~~~l~~~DiVInatP~g~  402 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAF-PLESLPELHRIDIIINCLPPSV  402 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccee-chhHhcccCCCCEEEEcCCCCC
Confidence            468999999999999999999999999999999988887654 22111 1222  2468999999999774

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=98.01  E-value=1.7e-05  Score=66.92  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCC-----CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|.+|.+++..|.+.| .+|++++|+.++.+.+.+.-     +....+..+.+.++|+||-|+|..
T Consensus       125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g  196 (278)
T PRK00258        125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG  196 (278)
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence            6889999999999999999999 78999999999988886541     111113345667899999999976

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=98.01  E-value=1.4e-05  Score=68.40  Aligned_cols=67  Identities=18%  Similarity=0.320  Sum_probs=49.3

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CC-CeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g-~~V~~~~r~~~~~~~l~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +++|||+|..|...+..+.. .+ .+|.+|+|++++.+++.+.    +  +..+.|++++++++|+|+.|+|+..
T Consensus       130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~  204 (313)
T PF02423_consen  130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTT  204 (313)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SS
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCC
Confidence            58999999999999998876 33 4799999999988887653    3  3467899999999999999999774

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.01  E-value=1.8e-05  Score=63.01  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=53.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCc--c--cCC---HHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT--V--GGS---PAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~--~--~~~---~~~~~~~~dvii~~v~~~   67 (257)
                      +++.|+|. |.+|..++..|.+.|++|++++|+.++.+.+.+.     +..  .  ..+   ..++++++|+||.++|.+
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g  108 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG  108 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence            47899995 9999999999999999999999999988776542     221  1  122   236678999999999977


Q ss_pred             H
Q 025163           68 A   68 (257)
Q Consensus        68 ~   68 (257)
                      .
T Consensus       109 ~  109 (194)
T cd01078         109 V  109 (194)
T ss_pred             c
Confidence            6

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.00  E-value=1.6e-05  Score=68.23  Aligned_cols=63  Identities=14%  Similarity=0.221  Sum_probs=48.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHH----HHH----CC----CcccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDE----LVA----HG----ATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~----l~~----~g----~~~~~~~~~~~~~~dvii~~v   64 (257)
                      +||+|||+|.||..++..++..| .+|.++|+++++++.    +..    .+    +....+++ ++++||+||++.
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            68999999999999999999988 689999998875432    111    11    12234555 679999999998

>PRK11579 putative oxidoreductase; Provisional

Probab=98.00  E-value=4.9e-05  Score=66.09  Aligned_cols=115  Identities=16%  Similarity=0.211  Sum_probs=78.1

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      +||||||+|.||.. .+..+.+. +.+++ ++|+++++..  .+. +....+|++++++  +.|+|++|+|+....+.  
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~   82 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK   82 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            48999999999984 56666654 56754 6799877654  222 4567789999985  57999999999888776  


Q ss_pred             HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .....|.+ +++-|+......+       .+....++++-+   ...+.+++++++
T Consensus        83 ~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~  138 (346)
T PRK11579         83 AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLA  138 (346)
T ss_pred             HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHh
Confidence            44466766 4578877654322       222233444432   345677888876

>PRK06199 ornithine cyclodeaminase; Validated

Probab=98.00  E-value=1.9e-05  Score=69.20  Aligned_cols=66  Identities=24%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C--CeEEEEcCCchhHHHHHH----C--C---CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G--FKVTVWNRTLSKCDELVA----H--G---ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g--~~V~~~~r~~~~~~~l~~----~--g---~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|..+......+... .  .+|.+|+|++++.+.+.+    .  |   +.++.|++++++++|+|+.|+++.
T Consensus       157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            589999999999999999873 2  479999999999887654    2  2   446789999999999999999754

>PLN02306 hydroxypyruvate reductase

Probab=97.98  E-value=3.1e-05  Score=68.01  Aligned_cols=72  Identities=17%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchh-HHHH-HHCC------------CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSK-CDEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~-~~~l-~~~g------------~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .+|||||+|.+|..+|+.|. .-|.+|.+||+.... .+.. ...|            .....+++|+++.||+|++++|
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P  245 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV  245 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence            37999999999999999986 668999999987642 1211 1111            1223589999999999999999


Q ss_pred             ChHHHHH
Q 025163           66 DPAAALS   72 (257)
Q Consensus        66 ~~~~~~~   72 (257)
                      -......
T Consensus       246 lt~~T~~  252 (386)
T PLN02306        246 LDKTTYH  252 (386)
T ss_pred             CChhhhh
Confidence            7665544

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.97  E-value=2.5e-05  Score=66.84  Aligned_cols=67  Identities=15%  Similarity=0.247  Sum_probs=57.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH----CC---CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA----HG---ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~----~g---~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      .++|||+|..+......+.+-  -.+|.+|+|++++.+++..    .+   +..+.|.+++++++|+|+.|+|+..
T Consensus       132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~  207 (330)
T COG2423         132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE  207 (330)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC
Confidence            479999999999999999864  3479999999999888764    33   4678899999999999999999875

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.97  E-value=2.3e-05  Score=67.35  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=47.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHH--HH--HH----CC----CcccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD--EL--VA----HG----ATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~--~l--~~----~g----~~~~~~~~~~~~~~dvii~~v   64 (257)
                      +||+|||+|.||..+|..++..|+ +|.++|+++++.+  .+  ..    .+    +....+. +.+++||+||++.
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            489999999999999999999995 8999999988542  11  11    11    2223465 5678999999977

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.97  E-value=2.6e-05  Score=67.39  Aligned_cols=66  Identities=17%  Similarity=0.243  Sum_probs=54.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHH----CC--CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HG--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~----~g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|..+......+..- . .+|.+|+|++++.+++.+    .+  +..+.+++++++++|+|+.|+++.
T Consensus       131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~  204 (346)
T PRK07589        131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK  204 (346)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC
Confidence            589999999999988877753 2 479999999999887654    23  345789999999999999999864

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=97.97  E-value=0.00017  Score=60.94  Aligned_cols=83  Identities=12%  Similarity=0.201  Sum_probs=62.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchh--HHHHHHCCCcc-cCCHHHHhh-----cCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSK--CDELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~--~~~l~~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~~   70 (257)
                      +||+|||+|.+|+.+...+.+. +.++. ++|+++++  ++..++.|+.. ..+.+++++     +.|+||.++|...+.
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~   84 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV   84 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence            4799999999999988888764 45644 56888764  34445568765 467888874     589999999998776


Q ss_pred             HH--HHHhcCCcEEe
Q 025163           71 LS--AITSKGGHFLE   83 (257)
Q Consensus        71 ~~--~~~~~g~~~~~   83 (257)
                      +.  .+...|.+.++
T Consensus        85 e~a~~a~eaGk~VID   99 (302)
T PRK08300         85 RHAAKLREAGIRAID   99 (302)
T ss_pred             HHHHHHHHcCCeEEE
Confidence            66  56677888887

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.95  E-value=0.00014  Score=65.60  Aligned_cols=130  Identities=18%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhH----HHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~----~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      +++.|+|.|.+|.++|..|++.|++|+++|++. +.+    +++.+.|+++.  ....+...++|+||.++-....... 
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~   85 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV   85 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence            379999999999999999999999999999975 333    34444465432  2233455679999987643222111 


Q ss_pred             -HHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           73 -AITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        73 -~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                       ..+.+|+..+..+-.-....  ..+..-+.|  |...+.+.+..+|+..+..+...|++|..
T Consensus        86 ~~a~~~~i~~~~~~~~~~~~~--~~~vI~ITGS~GKTTt~~~l~~iL~~~g~~~~~~g~ig~~  146 (450)
T PRK14106         86 VQAHKKGIEVIGEVELAYRFS--KAPIVAITGTNGKTTTTTLLGEIFKNAGRKTLVAGNIGYP  146 (450)
T ss_pred             HHHHHCCCcEEeHHHHHHhhc--CCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEeCcccHH
Confidence             45567777766332111111  123333333  34566677888998887666666665543

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.93  E-value=0.00018  Score=52.16  Aligned_cols=69  Identities=28%  Similarity=0.437  Sum_probs=54.1

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHH
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~   71 (257)
                      |-|+|.|.+|..+++.|.+.+.+|++.++++++.+.+.+.|..+.    .+++.+    +++++.++++++++....
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~   77 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENL   77 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHH
Confidence            568999999999999999977799999999999999999886432    122221    368899999998775543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.93  E-value=2.9e-05  Score=66.53  Aligned_cols=65  Identities=12%  Similarity=0.173  Sum_probs=48.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHH----HHC-----CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      +||+|||+|.+|..+|..|...|.  ++.++|++.++++-.    ...     ......+..+.+++||+||++.-
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag   82 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG   82 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence            589999999999999999999887  799999988765432    221     22233334456789999999764

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.93  E-value=0.00027  Score=56.62  Aligned_cols=72  Identities=21%  Similarity=0.235  Sum_probs=52.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCC-CcccC-CH-HHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~~-~~-~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      .+|.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... .. .+.+.++|+||.|+.++..-..
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~   86 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQ   86 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHH
Confidence            3789999999999999999999999999987653 345555544 22211 11 2235789999999998876554

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.91  E-value=0.00021  Score=64.86  Aligned_cols=132  Identities=15%  Similarity=0.150  Sum_probs=83.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-HHCCCcccC--CHHHHhhcCceEEEc--cCChHHHHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGM--LADPAAALSAIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-~~~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~~~~   75 (257)
                      +||.|+|+|..|.+++..|.+.|++|+++|++.....++ .+.|+....  ...+-+.++|+||..  +|.....-...+
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~   95 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ   95 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence            369999999999999999999999999999987665544 444776532  233445678988876  444333222455


Q ss_pred             hcCCcEEeccccCCcc----cc-ccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           76 SKGGHFLEAPVSGSKQ----PA-ETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~----~~-~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ..|+..+.-.-.....    .. ...+.+-+.|  |...+.+.+..+|+..+.++...|++|..
T Consensus        96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~p  159 (473)
T PRK00141         96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAAQAVGNIGVP  159 (473)
T ss_pred             HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcEEEeccCChh
Confidence            6777665522211000    00 0112333333  33456677889999988887777776644

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.90  E-value=0.00019  Score=64.55  Aligned_cols=129  Identities=19%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh----HHHHHHCCCccc--CCHHHHhhc-CceEEEcc--CChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVG--GSPAEVIKK-CTITIGML--ADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~----~~~l~~~g~~~~--~~~~~~~~~-~dvii~~v--~~~~~~~~   72 (257)
                      +|.|+|.|.+|.+.|+.|++.|++|+++|++...    .+.+.+.|+...  .+..+.... .|+||...  |.......
T Consensus         7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~   86 (447)
T PRK02472          7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE   86 (447)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence            5899999999999999999999999999986532    345666676553  344454444 89888764  43333333


Q ss_pred             HHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           73 AITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ..+..|+.++.-+-.....  ......-+.|  |...+.+.+..+|+..+..+...|++|..
T Consensus        87 ~a~~~~i~v~~~~el~~~~--~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~~~~Gnig~p  146 (447)
T PRK02472         87 KALEKGIPIITEVELAYLI--SEAPIIGITGSNGKTTTTTLIGEMLKAGGQHALLAGNIGYP  146 (447)
T ss_pred             HHHHCCCcEEeHHHHHHHh--cCCCEEEEeCCCchHHHHHHHHHHHHHCCCCeEEEcccChh
Confidence            5566787776644221111  1122233333  34566677899999888877777876543

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.89  E-value=0.001  Score=53.88  Aligned_cols=152  Identities=18%  Similarity=0.208  Sum_probs=87.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCc----------hhHHHHHHCC-CcccC-----CHHHHh-hcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEVI-KKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~----------~~~~~l~~~g-~~~~~-----~~~~~~-~~~dvii~   62 (257)
                      ++|.|.|+|++|..+++.|.+.|.. |.+.|.+.          +.++...+.+ +....     +.+++. .++|+++-
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip  103 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP  103 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence            5899999999999999999999884 66678877          6666555443 21111     122332 47899999


Q ss_pred             ccCChHHHHHHHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-C---C--hHHHHH
Q 025163           63 MLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-V---G--NGAKMK  136 (257)
Q Consensus        63 ~v~~~~~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~---g--~a~~~k  136 (257)
                      |.+.+...........+.++                  +-+.+...-....++|+.-|  +.++.+ .   |  ....+.
T Consensus       104 aA~~~~i~~~~a~~l~a~~V------------------~e~AN~p~t~~a~~~L~~~G--i~v~Pd~~~NaGGvi~s~~E  163 (217)
T cd05211         104 CALGNVIDLENAKKLKAKVV------------------AEGANNPTTDEALRILHERG--IVVAPDIVANAGGVIVSYFE  163 (217)
T ss_pred             ccccCccChhhHhhcCccEE------------------EeCCCCCCCHHHHHHHHHCC--cEEEChHHhcCCCeEeEHHH
Confidence            98877554433332222221                  11222222224555665555  222222 0   0  001222


Q ss_pred             H-------------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          137 L-------------VVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       137 l-------------~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +             +.+-+...+...+.+.+..+++.++++......+.
T Consensus       164 ~~q~~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~a  212 (217)
T cd05211         164 WVQNLQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANILA  212 (217)
T ss_pred             hcCCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            2             22234445567788888888999988876665543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.88  E-value=3.4e-05  Score=60.51  Aligned_cols=62  Identities=27%  Similarity=0.446  Sum_probs=50.4

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      |.|+|+ |.+|..+++.|.++|++|+++.|++++.+.  ..+++.       ..+..++++++|+||.+++.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence            689996 999999999999999999999999999887  444332       12345667899999999874

...

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=97.87  E-value=0.00019  Score=63.88  Aligned_cols=132  Identities=20%  Similarity=0.238  Sum_probs=85.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh----HHHHHHCCCcccC--CHHHHhhcCceEEEc--cCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVGG--SPAEVIKKCTITIGM--LADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~----~~~l~~~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~   72 (257)
                      |||.|+|+|.-|.+.++.|.+.|++|+++|.++..    ...+...++.+..  ...+....+|+|+..  +|.....-.
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~   87 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE   87 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence            68999999999999999999999999999976655    1223344544322  222556788999986  343333222


Q ss_pred             HHHhcCCcEEec-cccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHH
Q 025163           73 AITSKGGHFLEA-PVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAK  134 (257)
Q Consensus        73 ~~~~~g~~~~~~-pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~  134 (257)
                      .....|+.++.- -.+-...  ...+.+-+.|  |...+-..+..+|+..|.++...|++|....
T Consensus        88 ~A~~~gi~i~~dieL~~r~~--~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l  150 (448)
T COG0771          88 AAKAAGIEIIGDIELFYRLS--GEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPAL  150 (448)
T ss_pred             HHHHcCCcEEeHHHHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHH
Confidence            455677766541 0000000  1222233444  3345566789999999999888888887654

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.87  E-value=4.1e-05  Score=67.12  Aligned_cols=64  Identities=20%  Similarity=0.334  Sum_probs=52.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc---c---CCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~---~---~~~~~~~~~~dvii~~v~   65 (257)
                      ++.|||+|.+|...++.+...|.+|+++||++++++.+... +...   .   .++.+.++++|+||.|++
T Consensus       169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~  239 (370)
T TIGR00518       169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVL  239 (370)
T ss_pred             eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccc
Confidence            68999999999999999999999999999999998887654 3211   1   234567789999999974

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.86  E-value=4.6e-05  Score=65.16  Aligned_cols=64  Identities=16%  Similarity=0.223  Sum_probs=48.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~-------g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      +||+|||+|.+|..+|..|+..|.  ++.++|+++++++-    +...       .+....++++ ++++|+||++.-
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG   80 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG   80 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence            699999999999999999998875  79999998875432    2221       1222356665 689999999764

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=97.85  E-value=0.00012  Score=67.87  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=56.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~   71 (257)
                      +|-|+|+|.+|..+++.|.++|++|+++|.|+++++++++.|....    ++++   ++ ++++|.++++++++....
T Consensus       419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~  496 (558)
T PRK10669        419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG  496 (558)
T ss_pred             CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence            4789999999999999999999999999999999999998875431    2222   11 358999999999876543

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.85  E-value=0.0003  Score=63.60  Aligned_cols=130  Identities=15%  Similarity=0.184  Sum_probs=82.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCccc--CCHHHHhhcCceEEEcc--CChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVG--GSPAEVIKKCTITIGML--ADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v--~~~~~~~   71 (257)
                      .||+|+|.|..|.++|+.|.+.|++|+++|+++.     ..+++.+.|+...  ....+.+.++|+||.+.  |.....-
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~   94 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL   94 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence            3799999999999999999999999999998753     2245667787653  22334457899998863  2221212


Q ss_pred             HHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           72 SAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        72 ~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ...+..|+.+++-+......  ...+.+-+.|  |...+.+.+..+|+..+.++...|++|..
T Consensus        95 ~~a~~~~i~i~s~~e~~~~~--~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~~~~gniG~p  155 (458)
T PRK01710         95 VKAKEEGAYITSEMEEFIKY--CPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKTWVGGNIGTP  155 (458)
T ss_pred             HHHHHcCCcEEechHHhhhh--cCCCEEEEECCCCHHHHHHHHHHHHHhCCCCEEECCccChh
Confidence            24556787776543221110  1123333333  34566677889999888766545556544

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=97.85  E-value=4.1e-05  Score=65.24  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             EEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH----HHHC----C----CcccCCHHHHhhcCceEEEccC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH----G----ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~----l~~~----g----~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|||+|.||..+|..|+..|+ +|+++|+++++.+.    +.+.    +    +....+. +.+++||+||+++.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999999998876 99999999875431    2221    1    1223454 45789999999874

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.83  E-value=0.00016  Score=58.02  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=59.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHH----HHCC--Cc-------cc-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDEL----VAHG--AT-------VG-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l----~~~g--~~-------~~-   47 (257)
                      ||.|||+|.+|+.++.+|++.|. +++++|.+.                   .|++.+    .+.+  +.       +. 
T Consensus        23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~  102 (202)
T TIGR02356        23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTA  102 (202)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCH
Confidence            79999999999999999999996 799999872                   222222    2211  11       11 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      .+..+.++++|+||.|+.+......   .....++.++.+...
T Consensus       103 ~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~  145 (202)
T TIGR02356       103 ENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVV  145 (202)
T ss_pred             HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence            1234567899999999877655333   556678888886654

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.83  E-value=0.0001  Score=64.11  Aligned_cols=83  Identities=16%  Similarity=0.230  Sum_probs=56.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-----C---Cccc-CCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-----G---ATVG-GSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-----g---~~~~-~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+ |.+|..+.+.|.++ ++++. ++++..+.-+.+.+.     +   .... .+.++..+++|++|+|+|+..
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~   80 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV   80 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence            79999998 99999999999987 56777 556544322222211     1   1111 245566568999999999987


Q ss_pred             HHHH--HHHhcCCcEEe
Q 025163           69 AALS--AITSKGGHFLE   83 (257)
Q Consensus        69 ~~~~--~~~~~g~~~~~   83 (257)
                      ..+.  .+...|..++|
T Consensus        81 s~~~~~~~~~~G~~VID   97 (346)
T TIGR01850        81 SAELAPELLAAGVKVID   97 (346)
T ss_pred             HHHHHHHHHhCCCEEEe
Confidence            7665  44456777777

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.82  E-value=5.4e-05  Score=63.91  Aligned_cols=67  Identities=21%  Similarity=0.166  Sum_probs=52.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-C----CcccC---CHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G----ATVGG---SPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g----~~~~~---~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|||+|.+|.+++..|.+.|. +|++++|++++.+.+.+. +    +....   +..+...++|+||-|+|...
T Consensus       127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~  202 (282)
T TIGR01809       127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADV  202 (282)
T ss_pred             eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCC
Confidence            58899999999999999999996 699999999999988763 1    11111   22244578999999999753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>CHL00194 ycf39 Ycf39; Provisional

Probab=97.81  E-value=6.5e-05  Score=64.48  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=52.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..+++.|.++||+|++.+|++++...+...|+...       .++.++++++|+||-++.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            89999985 999999999999999999999999877665555554321       234567789999998764

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.81  E-value=0.00013  Score=71.03  Aligned_cols=84  Identities=19%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-Ce-------------EEEEcCCchhHHHHHHC--C---Ccc-cCCHHHHh---hcCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT   58 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~-------------V~~~~r~~~~~~~l~~~--g---~~~-~~~~~~~~---~~~d   58 (257)
                      ||+|||+|.||...+..|++.. .+             |++.|+++++++.+.+.  +   +.+ ..+.+++.   +++|
T Consensus       571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D  650 (1042)
T PLN02819        571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD  650 (1042)
T ss_pred             cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence            7999999999999999999753 23             89999999998888763  4   233 45665554   6799


Q ss_pred             eEEEccCChHHHHH--HHHhcCCcEEecc
Q 025163           59 ITIGMLADPAAALS--AITSKGGHFLEAP   85 (257)
Q Consensus        59 vii~~v~~~~~~~~--~~~~~g~~~~~~p   85 (257)
                      +|++|+|.......  .....|.++++..
T Consensus       651 aVIsalP~~~H~~VAkaAieaGkHvv~ek  679 (1042)
T PLN02819        651 VVISLLPASCHAVVAKACIELKKHLVTAS  679 (1042)
T ss_pred             EEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence            99999999877665  4556788887754

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.81  E-value=0.00017  Score=62.31  Aligned_cols=86  Identities=15%  Similarity=0.191  Sum_probs=66.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--Ce-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCC----hHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~----~~~~~~   72 (257)
                      .||+|||+ .||...+..+.+..  .+ |.++|+++++.+++++. |+...+|.+|++++.|++++++|+    ....+.
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~   82 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL   82 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence            48999999 78999999998754  56 55679999999988774 887889999999888888888864    233333


Q ss_pred             --HHHhcCCc-EEecccc
Q 025163           73 --AITSKGGH-FLEAPVS   87 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~   87 (257)
                        .+...|.+ +++-|+.
T Consensus        83 a~~aL~aGkHVL~EKPla  100 (343)
T TIGR01761        83 ARALLARGIHVLQEHPLH  100 (343)
T ss_pred             HHHHHhCCCeEEEcCCCC
Confidence              45567776 5678875

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.80  E-value=0.00019  Score=62.21  Aligned_cols=83  Identities=16%  Similarity=0.247  Sum_probs=59.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEEE-EcCCchhHHHHHH-------------------CCCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv   59 (257)
                      +||+|+|+|.||..+++.+.+. +++|.. ++++++....+.+                   .++.+..+++++..++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            5899999999999999998865 466554 4666654444332                   133445567777788999


Q ss_pred             EEEccCChHHHHH--HHHhcCCcEEe
Q 025163           60 TIGMLADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        60 ii~~v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      ||.|+|.....+.  .....|...++
T Consensus        82 VIdaT~~~~~~e~a~~~~~aGk~VI~  107 (341)
T PRK04207         82 VVDATPGGVGAKNKELYEKAGVKAIF  107 (341)
T ss_pred             EEECCCchhhHHHHHHHHHCCCEEEE
Confidence            9999998876665  45556766655

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.77  E-value=6e-05  Score=62.99  Aligned_cols=62  Identities=16%  Similarity=0.333  Sum_probs=49.3

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHH-------C----CCcccCCHHHHhhcCceEEEcc
Q 025163            3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-------H----GATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         3 I~iIG~-G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~-------~----g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      |+|||+ |.||..++..|+..|    .+|.++|+++++++....       .    .+..++|+.++++++|+||++.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~   78 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA   78 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence            689999 999999999999988    689999999876544322       1    2234566678899999999965

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK10206 putative oxidoreductase; Provisional

Probab=97.76  E-value=0.00013  Score=63.37  Aligned_cols=118  Identities=13%  Similarity=0.187  Sum_probs=76.8

Q ss_pred             CeEEEEcCChhHH-HHHHHHHH--CCCeE-EEEcCCchhHHHHHHCC-CcccCCHHHHhh--cCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGK-AISMNLLR--NGFKV-TVWNRTLSKCDELVAHG-ATVGGSPAEVIK--KCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~--~g~~V-~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~--~~dvii~~v~~~~~~~~-   72 (257)
                      +||||||+|.++. .....+..  .+.+| .++|+++++.+...+.+ ....+|.+++++  +.|+|++|+|+....+. 
T Consensus         2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~   81 (344)
T PRK10206          2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   81 (344)
T ss_pred             eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence            4899999999775 33454533  25665 46899876543233333 567789999985  57999999999988776 


Q ss_pred             -HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           73 -AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                       .....|.+ +++-|+......+.       +....++++-+   ...+.+++++++.
T Consensus        82 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~  139 (344)
T PRK10206         82 KRALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIES  139 (344)
T ss_pred             HHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHc
Confidence             44456665 67888876654332       22233444432   2446678888764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=97.76  E-value=0.00041  Score=62.78  Aligned_cols=120  Identities=20%  Similarity=0.195  Sum_probs=76.6

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEcc--CChHHHHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--ADPAAALSAIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v--~~~~~~~~~~~   75 (257)
                      ++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.|.+.|+.... ...+.+.++|+||.+-  |.....-....
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~   87 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR   87 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence            47999999999999 89999999999999997643 34456666776532 2234456789888763  43322222456


Q ss_pred             hcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163           76 SKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK  121 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~  121 (257)
                      .+|+.+++-+-...... ...+..-+.|  |...+...+..+|+..|.
T Consensus        88 ~~~i~i~~~~e~~~~~~-~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~  134 (461)
T PRK00421         88 ELGIPVVRRAEMLAELM-RFRTSIAVAGTHGKTTTTSLLAHVLAEAGL  134 (461)
T ss_pred             HCCCcEEeHHHHHHHHH-ccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence            67887776443321111 1113333333  334556678889988874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.76  E-value=0.00022  Score=64.81  Aligned_cols=131  Identities=23%  Similarity=0.229  Sum_probs=81.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-----hHHHHHHCCCcccCCH-HHHhhcCceEEEccC--ChHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSP-AEVIKKCTITIGMLA--DPAAALSA   73 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-----~~~~l~~~g~~~~~~~-~~~~~~~dvii~~v~--~~~~~~~~   73 (257)
                      +|.|||.|..|..+|..|.++|++|+++|+++.     ..+.+.+.|+...... .+...++|+||++.-  ........
T Consensus        18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~   97 (480)
T PRK01438         18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA   97 (480)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence            699999999999999999999999999996542     2244666687654211 113356899998752  22222224


Q ss_pred             HHhcCCcEEeccccCCccc--cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           74 ITSKGGHFLEAPVSGSKQP--AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        74 ~~~~g~~~~~~pv~~~~~~--~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      .+..|+.++.-+-......  ....+..-+.|  |...+...+..+|+..+.++...|++|..
T Consensus        98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~Gnig~~  160 (480)
T PRK01438         98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRAAAVGNIGTP  160 (480)
T ss_pred             HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEECCccHH
Confidence            4566776655432211110  01122333333  34566677899999988887777776644

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.75  E-value=0.00021  Score=66.74  Aligned_cols=72  Identities=21%  Similarity=0.306  Sum_probs=58.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~~   72 (257)
                      ++|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+.    ++++   ++ ++++|.++++++++.....
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~  480 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK  480 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence            36889999999999999999999999999999999999998875431    2222   11 4689999999999866544

>PRK15076 alpha-galactosidase; Provisional

Probab=97.74  E-value=4.6e-05  Score=68.00  Aligned_cols=67  Identities=13%  Similarity=0.194  Sum_probs=49.7

Q ss_pred             CeEEEEcCChhHHHHHH--HHH----HCCCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~--~L~----~~g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+||...+.  .++    -.+.+|+++|+++++++....        .+    +..++|..++++++|+||.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            69999999999966655  554    135689999999988663211        12    3346687899999999999


Q ss_pred             ccCCh
Q 025163           63 MLADP   67 (257)
Q Consensus        63 ~v~~~   67 (257)
                      ++-.+
T Consensus        82 ti~vg   86 (431)
T PRK15076         82 AIQVG   86 (431)
T ss_pred             eeeeC
Confidence            97654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.73  E-value=0.00032  Score=54.83  Aligned_cols=85  Identities=18%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---h---------------hHHH----HHHC--CCcc--------cC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---S---------------KCDE----LVAH--GATV--------GG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---~---------------~~~~----l~~~--g~~~--------~~   48 (257)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.   +               |.+.    +.+.  .++.        ..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            68999999999999999999997 599998875   1               2221    1111  1111        12


Q ss_pred             CHHHHhhcCceEEEccCChHHHHH---HHHhc-CCcEEeccc
Q 025163           49 SPAEVIKKCTITIGMLADPAAALS---AITSK-GGHFLEAPV   86 (257)
Q Consensus        49 ~~~~~~~~~dvii~~v~~~~~~~~---~~~~~-g~~~~~~pv   86 (257)
                      +..+.++++|+||.|+-+......   ..... ++.++.+..
T Consensus        81 ~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~  122 (174)
T cd01487          81 NLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASG  122 (174)
T ss_pred             hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEeh
Confidence            345677899999999777655432   33333 788777643

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.72  E-value=0.00015  Score=53.22  Aligned_cols=84  Identities=15%  Similarity=0.209  Sum_probs=54.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC-CCeEEEE-cCCchhHHHHHHCCCcc------cCCHHHH-hhcCceEEEccCChHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHGATV------GGSPAEV-IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~-g~~V~~~-~r~~~~~~~l~~~g~~~------~~~~~~~-~~~~dvii~~v~~~~~~~   71 (257)
                      ||+|||+ |.+|..++..|.+. ++++..+ +++.++.+.+...+-..      ..+..+. ..++|+||+|+|+....+
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            6899995 99999999999985 7776665 66554444444332111      1111111 248999999999998877


Q ss_pred             H---HH--HhcCCcEEecc
Q 025163           72 S---AI--TSKGGHFLEAP   85 (257)
Q Consensus        72 ~---~~--~~~g~~~~~~p   85 (257)
                      .   ..  ...|..++|+.
T Consensus        81 ~~~~~~~~~~~g~~viD~s   99 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLS   99 (122)
T ss_pred             HHHHHHhhhcCCCEEEECC
Confidence            4   12  24567777744

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=97.71  E-value=0.0005  Score=61.68  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HH----HHH-HCCCccc--CCHHHHhhcCceEEEcc--CChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD----ELV-AHGATVG--GSPAEVIKKCTITIGML--ADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~----~l~-~~g~~~~--~~~~~~~~~~dvii~~v--~~~~~~~   71 (257)
                      ||.|||.|..|.++|+.|.+.|++|+++|.++.. .+    .+. ..|+...  .+ .+.+.++|+||...  |.....-
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~   79 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV   79 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence            6899999999999999999999999999976542 21    122 2476543  23 34457889888753  4332222


Q ss_pred             HHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           72 SAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        72 ~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ...+..|+.++.-+-......  ..+..-+.|  |...+...+..+|+..+.++...|++|..
T Consensus        80 ~~a~~~~i~i~~~~e~~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~  140 (433)
T TIGR01087        80 QAAAKRGIPVVGDIELFLRLV--PLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP  140 (433)
T ss_pred             HHHHHCCCcEEEHHHHHHhhc--CCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence            255677877766442211111  223333333  34566677889999888776666666654

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.71  E-value=6.9e-05  Score=64.10  Aligned_cols=65  Identities=18%  Similarity=0.294  Sum_probs=47.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCc--hhHHH----HHH----CCC--c--ccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTL--SKCDE----LVA----HGA--T--VGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~--~~~~~----l~~----~g~--~--~~~~~~~~~~~~dvii~~   63 (257)
                      |||+|||+ |.+|..++..|+..|+  +|+++||++  ++++.    +.+    .+.  .  ...+. +.++++|+||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence            89999998 9999999999999987  499999954  43321    111    121  2  23354 458899999999


Q ss_pred             cCC
Q 025163           64 LAD   66 (257)
Q Consensus        64 v~~   66 (257)
                      +..
T Consensus        80 ag~   82 (309)
T cd05294          80 AGV   82 (309)
T ss_pred             cCC
Confidence            864

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.71  E-value=0.0015  Score=52.44  Aligned_cols=117  Identities=17%  Similarity=0.190  Sum_probs=74.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCC-Ccc---cCCHHHHhhcCceEEEccCChHHHHH---H
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATV---GGSPAEVIKKCTITIGMLADPAAALS---A   73 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g-~~~---~~~~~~~~~~~dvii~~v~~~~~~~~---~   73 (257)
                      ++.|||.|.+|..-++.|.+.|.+|++++.+.. .++.+.+.| +..   .... +.+.++++||.|+.+......   .
T Consensus        11 ~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~-~dl~~~~lVi~at~d~~ln~~i~~~   89 (205)
T TIGR01470        11 AVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDA-DILEGAFLVIAATDDEELNRRVAHA   89 (205)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCH-HHhCCcEEEEECCCCHHHHHHHHHH
Confidence            689999999999999999999999999987654 456666654 322   1132 345789999999888744333   3


Q ss_pred             HHhcCCcE--EeccccCC---ccccccCcEEEEec--C-ChhhHHHHHHHHHHh
Q 025163           74 ITSKGGHF--LEAPVSGS---KQPAETGQLVILSA--G-EKALYDEAISALNVI  119 (257)
Q Consensus        74 ~~~~g~~~--~~~pv~~~---~~~~~~~~~~~~~~--g-~~~~~~~~~~~l~~~  119 (257)
                      ....++.+  .|.|-.+.   |.....+.+.+.++  | ++.....+++-++.+
T Consensus        90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~  143 (205)
T TIGR01470        90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETL  143 (205)
T ss_pred             HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHh
Confidence            44556544  55553222   34455566655443  3 444444455555444

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.71  E-value=0.0011  Score=59.77  Aligned_cols=132  Identities=14%  Similarity=0.169  Sum_probs=83.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh--HHHHHH--CCCcccC--CHHHHhhcCceEEEcc--CChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGML--ADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~--~~~l~~--~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~   72 (257)
                      ++|.|+|.|..|.+.|+.|.+.|++|+++|.++..  .+++.+  .|+....  ...+...++|+||...  |.....-.
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~   85 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE   85 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence            37999999999999999999999999999976543  344544  3665422  1233446889999864  33222222


Q ss_pred             HHHhcCCcEEeccccCCccccc-cCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           73 AITSKGGHFLEAPVSGSKQPAE-TGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~~~~~~~~-~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      .....|+.+++-+-........ ..+..-+.|  |...+...+..+|+..+..++..|++|..
T Consensus        86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~GniG~~  148 (445)
T PRK04308         86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDTVIAGNIGTP  148 (445)
T ss_pred             HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCeEEeCCccHH
Confidence            4556787776644221111101 123333333  34566677899999988877777877754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=97.71  E-value=0.00026  Score=57.88  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=52.7

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG-------GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~   66 (257)
                      |.|+|+ |.+|..++..|.+.+++|.+..|++.  ..+.+.+.|+.+.       .++.++++++|.||++++.
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~   74 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP   74 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence            789986 99999999999999999999999864  4677888887532       2445577899999999983

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.71  E-value=0.00066  Score=61.38  Aligned_cols=131  Identities=15%  Similarity=0.191  Sum_probs=79.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEc--cCChH----HHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM--LADPA----AALSAIT   75 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~--v~~~~----~~~~~~~   75 (257)
                      ||.|||.|..|.+.|..|.+.|++|+++|+++.....+.+.|+.......+.+.++|+||..  +|...    ..-....
T Consensus        11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~   90 (460)
T PRK01390         11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR   90 (460)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence            69999999999999999999999999999876655556666776543222335678988863  23221    1111344


Q ss_pred             hcCCcEEeccccCCccc---cccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           76 SKGGHFLEAPVSGSKQP---AETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~---~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ..|+.+++-.-......   ......+-+.|  |...+.+.+..+|+..+.++...|++|..
T Consensus        91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~gnig~~  152 (460)
T PRK01390         91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMGGNIGTA  152 (460)
T ss_pred             HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEcCccchh
Confidence            56776666332111100   01122223333  34556667888888877665544555543

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00055  Score=57.46  Aligned_cols=116  Identities=19%  Similarity=0.322  Sum_probs=78.0

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|.+++..|...|..|+++++..              .++.+.++++|+||.+++.+.......-..|..
T Consensus       160 ~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gav  225 (286)
T PRK14175        160 NAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTKDVVKEGAV  225 (286)
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCHHHcCCCcE
Confidence            789999988 99999999999999999998742              257788899999999999876554434456778


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+...    ..|.   ++ ||-+ ++.+++.-..+..   .-|.+|.-....+..|++.
T Consensus       226 VIDvGi~~~----~~gk---l~-GDvd-~~~~~~~a~~iTP---VPGGVGp~T~a~L~~n~~~  276 (286)
T PRK14175        226 IIDVGNTPD----ENGK---LK-GDVD-YDAVKEIAGAITP---VPGGVGPLTITMVLNNTLL  276 (286)
T ss_pred             EEEcCCCcC----CCCC---ee-cCcc-HHHHHhhccCcCC---CCCCCHHHHHHHHHHHHHH
Confidence            888766431    1222   22 3322 2334443332222   2244677677777777663

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.70  E-value=0.00019  Score=62.25  Aligned_cols=84  Identities=15%  Similarity=0.193  Sum_probs=54.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-----CC--cccCCHHH-HhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~-~~~~~dvii~~v~~~~~~   70 (257)
                      |||+|||+ |.+|..+++.|.++ +++++.+.++.+..+.+.+.     +.  ....+.++ ..+++|+||+|+|+....
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            58999997 99999999999987 56765543333332233221     11  01222222 446899999999998776


Q ss_pred             HH--HHHhcCCcEEec
Q 025163           71 LS--AITSKGGHFLEA   84 (257)
Q Consensus        71 ~~--~~~~~g~~~~~~   84 (257)
                      +.  .+...|.+.+|.
T Consensus        83 ~~v~~a~~aG~~VID~   98 (343)
T PRK00436         83 DLAPQLLEAGVKVIDL   98 (343)
T ss_pred             HHHHHHHhCCCEEEEC
Confidence            65  444578888873

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=97.69  E-value=0.00012  Score=62.32  Aligned_cols=64  Identities=19%  Similarity=0.335  Sum_probs=48.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC--------C-Ccc--cCCHHHHhhcCceEEEccCCh
Q 025163            3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G-ATV--GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~--------g-~~~--~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |+|||+|.+|..+|..|+..|  ++++++|+++++++.....        . .+.  ..+ .+.+++||+||++...+
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p   77 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP   77 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence            689999999999999999988  6899999998876544331        1 111  234 35778999999998643

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.68  E-value=0.00031  Score=60.77  Aligned_cols=86  Identities=20%  Similarity=0.221  Sum_probs=60.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---------------------hhHHH----HHHC--CCcc-------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---------------------SKCDE----LVAH--GATV-------   46 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---------------------~~~~~----l~~~--g~~~-------   46 (257)
                      +|.|||+|.+|+.++..|++.|. +++++|++.                     .|++.    +.+.  .+.+       
T Consensus        26 ~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~~  105 (338)
T PRK12475         26 HVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTDV  105 (338)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            79999999999999999999997 799999874                     12222    2222  1211       


Q ss_pred             -cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           47 -GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        47 -~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                       ..+.+++++++|+||.|+.+......   .....++.++.+...
T Consensus       106 ~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~  150 (338)
T PRK12475        106 TVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCV  150 (338)
T ss_pred             CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence             12456778899999999976654332   455678888776544

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.67  E-value=0.00078  Score=60.72  Aligned_cols=130  Identities=18%  Similarity=0.194  Sum_probs=81.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHH--CCCcccC--CHHHHhhcCceEEEc--cCChHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGM--LADPAAALSA   73 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~--~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~~   73 (257)
                      .|.|||.|..|.++|+.|.+.|++|+++|.++.  ..+.|.+  .|+....  ...+.+.++|+||..  +|.....-..
T Consensus         8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~   87 (448)
T PRK03803          8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA   87 (448)
T ss_pred             eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence            488999999999999999999999999997643  2344655  3765532  123445678988775  3433222224


Q ss_pred             HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163           74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA  133 (257)
Q Consensus        74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~  133 (257)
                      .+..|+.+++-.-......  .....-+.|  |...+...+..+|+..+.++...|++|...
T Consensus        88 a~~~~i~i~~~~el~~~~~--~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~  147 (448)
T PRK03803         88 AAAMGIEVIGDIELFAREA--KAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA  147 (448)
T ss_pred             HHHCCCcEEEHHHHHHHhc--CCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence            5667877776331111111  123333333  334556778889998887766666666553

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=97.65  E-value=0.00026  Score=66.31  Aligned_cols=71  Identities=25%  Similarity=0.364  Sum_probs=57.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~~   72 (257)
                      +|-|+|.|.+|..+++.|.++|+++++.|.|+++++.+++.|..+.    ++++-+    ++++|.+++++++++....
T Consensus       402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~  480 (621)
T PRK03562        402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ  480 (621)
T ss_pred             cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence            5889999999999999999999999999999999999998876432    233211    3589999999988766544

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.63  E-value=0.0016  Score=59.50  Aligned_cols=133  Identities=17%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHC--CCcccC--CHHHHhhcCceEEEc--cCChH----H
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADPA----A   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~--g~~~~~--~~~~~~~~~dvii~~--v~~~~----~   69 (257)
                      +|.|||.|..|.++|+.|.+.|++|+++|.+..  ..+.|.+.  |+....  ...+.++++|+||..  +|...    .
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~   88 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP   88 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence            699999999999999999999999999997543  33445555  444321  233455689999986  34321    1


Q ss_pred             HHHHHHhcCCcEEeccccCCccc-----c-ccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHHH
Q 025163           70 ALSAITSKGGHFLEAPVSGSKQP-----A-ETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGAK  134 (257)
Q Consensus        70 ~~~~~~~~g~~~~~~pv~~~~~~-----~-~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~  134 (257)
                      .-...+..++.++.-+-.-....     . ...+..-+.|  |...+...+..+|+..+.++...|+++....
T Consensus        89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~~~~Gni~~~~~  161 (498)
T PRK02006         89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKVAVAGNISPAAL  161 (498)
T ss_pred             HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCEEEECCCCHHHH
Confidence            11134556776664221100000     0 0113333333  3456677889999999988877787765543

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.63  E-value=0.00058  Score=51.52  Aligned_cols=87  Identities=24%  Similarity=0.347  Sum_probs=59.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCcc-------c-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GATV-------G-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~~-------~-   47 (257)
                      ||.|||+|.+|..++++|++.|. +++++|.+.=                   |.+.+++    .  .+++       . 
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~   80 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE   80 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence            68999999999999999999997 6999986521                   2222211    1  1111       1 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+..++.|+||.|+.+......   .....++.|+++...+
T Consensus        81 ~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g  124 (143)
T cd01483          81 DNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLG  124 (143)
T ss_pred             hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            1123567899999999988654333   5667788898877655

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02602 lactate dehydrogenase

Probab=97.63  E-value=0.00016  Score=62.75  Aligned_cols=64  Identities=17%  Similarity=0.206  Sum_probs=47.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC----C-Cccc--CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----G-ATVG--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~----g-~~~~--~~~~~~~~~~dvii~~v~   65 (257)
                      +||+|||+|.+|..+|..|...+.  ++.++|+++++++-    +...    + ..+.  .+.++ +++||+||++.-
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~~-~~daDiVVitAG  114 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYAV-TAGSDLCIVTAG  114 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHHH-hCCCCEEEECCC
Confidence            389999999999999999998875  79999998875432    2221    1 2332  34544 789999999853

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.63  E-value=0.031  Score=48.79  Aligned_cols=232  Identities=16%  Similarity=0.219  Sum_probs=138.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----C--------------------CcccCCHHHHhh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK   55 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g--------------------~~~~~~~~~~~~   55 (257)
                      +|-|+|+|..+--+|..|.+.+. .|-+.+|...+.+++.+.     +                    -....+.+++..
T Consensus         3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g   82 (429)
T PF10100_consen    3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG   82 (429)
T ss_pred             ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence            58999999999999999998875 699999987776665331     1                    012346777777


Q ss_pred             cCceEEEccCChHHHHH------------------------------HHHhcC--CcEEeccc-cCCc------------
Q 025163           56 KCTITIGMLADPAAALS------------------------------AITSKG--GHFLEAPV-SGSK------------   90 (257)
Q Consensus        56 ~~dvii~~v~~~~~~~~------------------------------~~~~~g--~~~~~~pv-~~~~------------   90 (257)
                      +=|.+|+|||.++-...                              .+.+.+  +.+++-.. .|..            
T Consensus        83 ~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vl  162 (429)
T PF10100_consen   83 EWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVL  162 (429)
T ss_pred             cccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceeccCCCcceeh
Confidence            88999999999877666                              222222  33333110 0000            


Q ss_pred             cccccCcEEEEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHH-----------------HHH------------
Q 025163           91 QPAETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKM-----------------KLV------------  138 (257)
Q Consensus        91 ~~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~-----------------kl~------------  138 (257)
                      ..+-+..  +.+|   ++....+++..+++.++..+..+..+=.|+..                 +.+            
T Consensus       163 t~~vK~k--iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYK  240 (429)
T PF10100_consen  163 TTAVKKK--IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYK  240 (429)
T ss_pred             hhhhhce--EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEe
Confidence            0111111  3333   34566788999999998776555542222111                 111            


Q ss_pred             -------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC-------CCchhhhcc--CC-------------ccc
Q 025163          139 -------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGK--GP-------------TML  189 (257)
Q Consensus       139 -------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~-------~~s~~~~~~--~~-------------~~~  189 (257)
                             .-.++.-|.....|++.+..+.|+++=.+.+++....       ....-.+++  .+             .++
T Consensus       241 L~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiL  320 (429)
T PF10100_consen  241 LFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSIL  320 (429)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhhe
Confidence                   1133445677889999999999998777777776521       000000000  00             011


Q ss_pred             CCCCC-C-------Cc----------------ccchH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          190 QSNYA-P-------AF----------------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       190 ~~~~~-~-------~~----------------~~~~~-~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                      -.-|+ |       .|                .+.-| ..|   ++.+.-.++.+++++|..+...+.++...+
T Consensus       321 IDPFS~PD~~GrYFDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~  394 (429)
T PF10100_consen  321 IDPFSEPDEQGRYFDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS  394 (429)
T ss_pred             eCCCCCCCCCCCcccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence            01111 0       01                12222 223   588899999999999999999999988765

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.60  E-value=0.0015  Score=50.15  Aligned_cols=69  Identities=20%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC-CcccC-CHH-HHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SPA-EVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g-~~~~~-~~~-~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|||.|.+|...++.|.+.|++|++++  ++..+++.+.+ +.... .+. +-++++|+||.++.++..-..
T Consensus        15 ~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~   86 (157)
T PRK06719         15 VVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM   86 (157)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence            78999999999999999999999999996  44445555432 22111 111 125789999999887765444

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.57  E-value=0.00019  Score=61.22  Aligned_cols=64  Identities=11%  Similarity=0.183  Sum_probs=47.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-------CCcccCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-------GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      ||+|||+|.+|..+|..|+..+.  ++.++|+++++++    +|...       ..+...+..+.+++||+||++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            79999999999999999998875  7999999876543    33331       11222233466789999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.57  E-value=0.00033  Score=57.15  Aligned_cols=71  Identities=21%  Similarity=0.246  Sum_probs=50.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dvi   60 (257)
                      ++|+|.|.|++|..+++.|.+.|..|+ +.|.          +.+.+.++.+. |       .... ++++.. .++|++
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl  110 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL  110 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence            589999999999999999999999988 5676          56666655443 2       1111 233332 478999


Q ss_pred             EEccCChHHHHH
Q 025163           61 IGMLADPAAALS   72 (257)
Q Consensus        61 i~~v~~~~~~~~   72 (257)
                      +-|.+.......
T Consensus       111 ip~a~~~~i~~~  122 (227)
T cd01076         111 IPAALENQITAD  122 (227)
T ss_pred             EecCccCccCHH
Confidence            999876655444

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=97.55  E-value=0.0011  Score=59.82  Aligned_cols=119  Identities=16%  Similarity=0.219  Sum_probs=75.1

Q ss_pred             eEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEc--cCChHHHHHHHHh
Q 025163            2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGM--LADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~--v~~~~~~~~~~~~   76 (257)
                      +|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.|.+.|+.... ...+.+.++|+||.+  +|.....-.....
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~   80 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE   80 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence            5889999999998 99999999999999997653 34556666876543 223445678988875  3433222224556


Q ss_pred             cCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK  121 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~  121 (257)
                      .|+.+++-+-...... ...+..-+.|  |...+...+..+|+..|.
T Consensus        81 ~~i~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~ll~~iL~~~g~  126 (448)
T TIGR01082        81 RGIPVIRRAEMLAELM-RFRHSIAVAGTHGKTTTTAMIAVILKEAGL  126 (448)
T ss_pred             cCCceEeHHHHHHHHH-hcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence            7877776443321111 1123333333  344556678888888774

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.54  E-value=0.00031  Score=48.13  Aligned_cols=44  Identities=30%  Similarity=0.359  Sum_probs=37.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      .+++|+|.|.+|..++..|.+. +.+|.+|||                          |++|.|++.+...
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~   68 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPV   68 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCc
Confidence            3799999999999999999998 678999998                          8888888765443

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.53  E-value=0.00037  Score=55.73  Aligned_cols=31  Identities=32%  Similarity=0.572  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~   32 (257)
                      ||+|+|+|.||+.++..|++.|. +++++|.+
T Consensus        23 ~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        23 TVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            79999999999999999999998 69999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=97.49  E-value=0.00097  Score=48.48  Aligned_cols=75  Identities=17%  Similarity=0.158  Sum_probs=53.5

Q ss_pred             CeEEEEc----CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG----~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      .+|+|||    .+.+|..+.++|.++|++|+.++.+.+.+.     |.+...++.|.-...|++++++|.....+.  .+
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~-----G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~   75 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL-----GIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEA   75 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET-----TEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC-----cEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHH
Confidence            3699999    699999999999999999999987654332     778888898844789999999998766665  34


Q ss_pred             HhcCCc
Q 025163           75 TSKGGH   80 (257)
Q Consensus        75 ~~~g~~   80 (257)
                      ...|+.
T Consensus        76 ~~~g~~   81 (116)
T PF13380_consen   76 AALGVK   81 (116)
T ss_dssp             HHHT-S
T ss_pred             HHcCCC
Confidence            444543

>PRK05086 malate dehydrogenase; Provisional

Probab=97.49  E-value=0.00035  Score=59.81  Aligned_cols=66  Identities=18%  Similarity=0.319  Sum_probs=47.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH---CCCeEEEEcCCchhH---HHHHHCC--Ccc----cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~---~g~~V~~~~r~~~~~---~~l~~~g--~~~----~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+ |.+|.+++..|..   .+++++++||++..-   .++...+  ..+    ..++.+.++++|+||+|.-.
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~   79 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV   79 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence            89999999 9999999998854   346899999985431   2343312  111    34656778899999999754

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.49  E-value=0.001  Score=60.05  Aligned_cols=130  Identities=19%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-H----HHHHHCCCcccC--CHH-----HHhhcCceEEEccC--Ch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGG--SPA-----EVIKKCTITIGMLA--DP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~----~~l~~~g~~~~~--~~~-----~~~~~~dvii~~v~--~~   67 (257)
                      ||.|||.|..|...|+.|.+.|++|+++|+++.. .    ..+.+.|++...  ...     +...+.|+|+....  .+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            7999999999999999999999999999976432 2    235566765532  111     34567898887532  22


Q ss_pred             HHHHHHHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           68 AAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        68 ~~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ...-...+..|+.++.-........ ...+..-+.|  |...+.+.+..+|+..+.++...|.+|..
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~-~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~~~~gniG~~  147 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRAL-KHIPWVGITGTNGKTTVTALLAHILQAAGLNAPACGNIGYA  147 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhh-cCCCEEEEeCCCchHHHHHHHHHHHHHcCCCeEEecccChh
Confidence            2222245567877766443211110 1123333333  34556667889999888776666666644

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.43  E-value=0.0011  Score=54.08  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=59.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHH----HCC--Cc-------c-c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELV----AHG--AT-------V-G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~----~~g--~~-------~-~   47 (257)
                      ||.|||+|.+|+.++.+|++.|. +++++|.+.=                   |++.+.    +.+  +.       . .
T Consensus        23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~  102 (228)
T cd00757          23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA  102 (228)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence            79999999999999999999996 6888865431                   222221    111  11       1 1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+..+++|+||.|+.+......   .....++.++.+.+.+
T Consensus       103 ~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g  146 (228)
T cd00757         103 ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLG  146 (228)
T ss_pred             HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            2334567889999999987765433   4556788888876544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.42  E-value=0.0011  Score=57.48  Aligned_cols=86  Identities=22%  Similarity=0.275  Sum_probs=59.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---------------------hhHHH----HHHCC--Cc-------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---------------------SKCDE----LVAHG--AT-------V   46 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---------------------~~~~~----l~~~g--~~-------~   46 (257)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.                     .|.+.    +++.+  +.       .
T Consensus        26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~  105 (339)
T PRK07688         26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV  105 (339)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence            79999999999999999999998 899999863                     12222    22211  11       1


Q ss_pred             -cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           47 -GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        47 -~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                       ..+..+.++++|+||.|+-+......   .....++.++.+.+.
T Consensus       106 ~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~  150 (339)
T PRK07688        106 TAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACV  150 (339)
T ss_pred             CHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeee
Confidence             12345677899999999887755433   445567777776544

>PRK06349 homoserine dehydrogenase; Provisional

Probab=97.41  E-value=0.00057  Score=61.11  Aligned_cols=83  Identities=25%  Similarity=0.402  Sum_probs=56.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--------C--Ce-EEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--------g--~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~   67 (257)
                      +||++||+|.||..++..|.++        |  .+ +.+++|++++.+.+...+....++++++++  +.|+|+.|++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            3799999999999999888654        2  34 456688877654332224556778999885  479999998764


Q ss_pred             HHHHH---HHHhcCCcEEe
Q 025163           68 AAALS---AITSKGGHFLE   83 (257)
Q Consensus        68 ~~~~~---~~~~~g~~~~~   83 (257)
                      .....   ..-..|.+++.
T Consensus        84 ~~~~~~~~~aL~~GkhVVt  102 (426)
T PRK06349         84 EPARELILKALEAGKHVVT  102 (426)
T ss_pred             hHHHHHHHHHHHCCCeEEE
Confidence            33222   33355666554

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.41  E-value=0.0014  Score=52.87  Aligned_cols=84  Identities=20%  Similarity=0.393  Sum_probs=56.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc------------------hhHHHHH----HC--CCcc--------cC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL------------------SKCDELV----AH--GATV--------GG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~------------------~~~~~l~----~~--g~~~--------~~   48 (257)
                      +|.|||+|.+|+.++..|++.|. +++++|.+.                  .|++.++    +.  .+.+        ..
T Consensus        30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~  109 (212)
T PRK08644         30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKIDED  109 (212)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeecCHH
Confidence            69999999999999999999997 599998872                  1222222    11  1111        11


Q ss_pred             CHHHHhhcCceEEEccCChHHHHH---HHHhc-CCcEEecc
Q 025163           49 SPAEVIKKCTITIGMLADPAAALS---AITSK-GGHFLEAP   85 (257)
Q Consensus        49 ~~~~~~~~~dvii~~v~~~~~~~~---~~~~~-g~~~~~~p   85 (257)
                      +..+.++++|+||.|+-+......   ..... +..++.+.
T Consensus       110 ~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~  150 (212)
T PRK08644        110 NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAAS  150 (212)
T ss_pred             HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEee
Confidence            234567889999999876655332   44455 77777654

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.39  E-value=0.00054  Score=59.00  Aligned_cols=86  Identities=20%  Similarity=0.202  Sum_probs=61.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHH--HHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA--LSAI   74 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~--~~~~   74 (257)
                      ++|.|+|+ |.||..+++.|.++ | .++++++|+.++++.+..+ +..-..++.+++.++|+|+.++..+...  ....
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~~I~~~~  235 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGVEIDPET  235 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCCcCCHHH
Confidence            36899998 89999999999864 5 5899999999888887654 2112235778888999999988664432  1112


Q ss_pred             HhcCCcEEeccc
Q 025163           75 TSKGGHFLEAPV   86 (257)
Q Consensus        75 ~~~g~~~~~~pv   86 (257)
                      -.++..++|-.+
T Consensus       236 l~~~~~viDiAv  247 (340)
T PRK14982        236 LKKPCLMIDGGY  247 (340)
T ss_pred             hCCCeEEEEecC
Confidence            245666776444

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.39  E-value=0.0013  Score=55.92  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=79.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH---CCCeEE-EEcCCchhHHHHHHC-CC---cccCCHHHHhhcC--ceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-GA---TVGGSPAEVIKKC--TITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~---~g~~V~-~~~r~~~~~~~l~~~-g~---~~~~~~~~~~~~~--dvii~~v~~~~~~~   71 (257)
                      |+||+|+|.|+.-.++.|.-   .+|.|+ +.+|+.+++..+++. ++   +...|.+|++++.  |+|.+..|.++..+
T Consensus         8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e   87 (351)
T KOG2741|consen    8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE   87 (351)
T ss_pred             EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence            78999999999999999974   367755 459999999888765 43   5677999999765  99999999999988


Q ss_pred             H--HHHhcCC-cEEeccccCCcc-------ccccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           72 S--AITSKGG-HFLEAPVSGSKQ-------PAETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        72 ~--~~~~~g~-~~~~~pv~~~~~-------~~~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .  ....++- .+++-|+.-...       .++...+.++.|-.   -...+++++++.
T Consensus        88 vv~l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P~~~~lke~l~  146 (351)
T KOG2741|consen   88 VVMLALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFPRYAKLKELLS  146 (351)
T ss_pred             HHHHHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCcHHHHHHHHHh
Confidence            7  2222332 455666544433       22223344555432   233456777765

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.38  E-value=0.00053  Score=51.20  Aligned_cols=88  Identities=26%  Similarity=0.372  Sum_probs=58.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCc-------c-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GAT-------V-   46 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~-------~-   46 (257)
                      .||.|+|+|.+|+.++.+|++.|. +++++|.+.=                   |.+.+++    .  +..       . 
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~   82 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID   82 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence            379999999999999999999997 6999986521                   1222211    1  111       1 


Q ss_pred             cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           47 GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        47 ~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      ..+..+.++++|+||.|+-+......   .....+..++.+.+.+
T Consensus        83 ~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g  127 (135)
T PF00899_consen   83 EENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNG  127 (135)
T ss_dssp             HHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred             cccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            12344667899999999887554433   5666788888766543

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=97.35  E-value=0.00038  Score=56.30  Aligned_cols=78  Identities=23%  Similarity=0.280  Sum_probs=53.1

Q ss_pred             eEEEEcCChhHHHHHHHHH--HCCCeEE-EEcCCchhHHHHHHCCC--cccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHGA--TVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~--~~g~~V~-~~~r~~~~~~~l~~~g~--~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      +|+|||+|.+|..++..+.  ..|+++. ++|+++++..... .|.  ....++.+.++  +.|.+++|+|.....+.  
T Consensus        86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~  164 (213)
T PRK05472         86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVAD  164 (213)
T ss_pred             EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHH
Confidence            7999999999999998643  4577755 4688876653222 122  22345666664  49999999998876553  


Q ss_pred             HHHhcCCc
Q 025163           73 AITSKGGH   80 (257)
Q Consensus        73 ~~~~~g~~   80 (257)
                      .+...|+.
T Consensus       165 ~l~~~Gi~  172 (213)
T PRK05472        165 RLVEAGIK  172 (213)
T ss_pred             HHHHcCCC
Confidence            45566753

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.35  E-value=0.00083  Score=54.82  Aligned_cols=67  Identities=24%  Similarity=0.363  Sum_probs=49.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCC----chhH-------HHHHHC-CC-cccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~----~~~~-------~~l~~~-g~-~~~~~~~~~~~~~dvii~~v   64 (257)
                      +||.|+|+|.+|..++..|.+.|.   +|+++||+    .++.       +.+.+. +. ....++.+.++++|++|-++
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT  105 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS  105 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence            478999999999999999999996   59999998    4443       233322 11 11136768888999999999


Q ss_pred             CCh
Q 025163           65 ADP   67 (257)
Q Consensus        65 ~~~   67 (257)
                      |..
T Consensus       106 ~~G  108 (226)
T cd05311         106 RPG  108 (226)
T ss_pred             CCC
Confidence            733

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases

Probab=97.34  E-value=0.0019  Score=47.97  Aligned_cols=126  Identities=14%  Similarity=0.143  Sum_probs=75.8

Q ss_pred             EEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch
Q 025163          100 ILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP  179 (257)
Q Consensus       100 ~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~  179 (257)
                      +.+.||++..+.++++++.+|.+++.+.+ ..-.....+.-+..+....++..+..++++.|++.+...+++.      |
T Consensus         4 ~~iEgd~~~~~~l~~l~~~lg~~~~~i~~-~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~------P   76 (132)
T PF10728_consen    4 FAIEGDEEALEVLQELAKELGGRPFEIDS-EQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALL------P   76 (132)
T ss_dssp             EEEEESHHHHHHHHHHHHHTTSEEEE--G-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHH------H
T ss_pred             EEEecCHHHHHHHHHHHHHhCCceEEeCH-HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHH------H
Confidence            44555999999999999999999888866 5555666666666666777888899999999999955444333      2


Q ss_pred             hhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          180 MFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      ..+....++...+.....+....+.|...+.+..+...-..|-...+|+.+.+
T Consensus        77 Li~~t~~n~~~~g~~~alTGP~~RgD~~Tv~kHl~~L~~~~p~~~~lY~~ls~  129 (132)
T PF10728_consen   77 LIRETLENILQLGPADALTGPAARGDIGTVAKHLAALDDHDPELKELYRALSR  129 (132)
T ss_dssp             HHHHHHHHHHHS-HHHH--SCCHCTHHHHHHHHHHHCCCH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCchhccCCCcccCCHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            22221222222221112233445667777777666654433566666655544

; PDB: 3D1L_A 2I76_A 3DFU_A.

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=97.34  E-value=0.0006  Score=57.27  Aligned_cols=66  Identities=27%  Similarity=0.394  Sum_probs=50.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC----CCc-ccCCHHHH--hhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~----g~~-~~~~~~~~--~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|.++.+++..|++.| .+|+++||+.++.++|++.    +.. ......+.  ..++|+||=|+|..
T Consensus       128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G  201 (283)
T COG0169         128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG  201 (283)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence            5899999999999999999999 5799999999999998764    211 11122221  22589999999976

>PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1

Probab=97.33  E-value=0.0008  Score=56.36  Aligned_cols=96  Identities=24%  Similarity=0.229  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCCCCCCCcccchH-----
Q 025163          132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLKHQ-----  202 (257)
Q Consensus       132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----  202 (257)
                      |+.+||++|-+.+.++++++|+..+++. .|++++++.++..   .+...|++++....-+..+|.++..-++..     
T Consensus         1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~il~~~d~~g~~lld~I~d~a~   80 (291)
T PF00393_consen    1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADILRKKDETGGPLLDKILDKAG   80 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHHHT-B-TTSSBGGGGB-S---
T ss_pred             CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHHHhhccCccCcchhhhCCccC
Confidence            6889999999999999999999999995 6888877766655   566666666544333333332211111111     


Q ss_pred             HH-HHHHHHHHHhhcCCCchHHHHHH
Q 025163          203 QK-DMRLALALGDENAVSMPIAAAAN  227 (257)
Q Consensus       203 ~k-d~~~~~~~a~~~g~~~p~~~~~~  227 (257)
                      .| .-+...+.+-+.|+|+|+...++
T Consensus        81 ~kGtG~Wt~~~a~~~gvp~p~I~~a~  106 (291)
T PF00393_consen   81 QKGTGKWTVQEALELGVPAPTIAAAV  106 (291)
T ss_dssp             -BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred             CCCccchHHHHHHHhCCCccHHHHHH
Confidence            11 23667888889999999987643

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A ....

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=97.33  E-value=0.00033  Score=49.13  Aligned_cols=78  Identities=27%  Similarity=0.311  Sum_probs=55.2

Q ss_pred             eEEEEcCChhHHHHHHHHH-HCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGLGIMGKAISMNLL-RNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~-~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~   75 (257)
                      |+.|+|+|+.|.+++..+. ..|+. +.++|.++++.-+-. .|+.+..+.+++.+.  .|+-++|||.....+.  .+.
T Consensus         5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~~~a~~~~~~~~   83 (96)
T PF02629_consen    5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPAEAAQEVADELV   83 (96)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-HHHHHHHHHHHH
T ss_pred             eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCHHHHHHHHHHHH
Confidence            6899999999999986554 45765 666799988654221 266677688888776  9999999998776655  444


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        84 ~~gIk   88 (96)
T PF02629_consen   84 EAGIK   88 (96)
T ss_dssp             HTT-S
T ss_pred             HcCCC
Confidence            45544

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.32  E-value=0.0011  Score=59.73  Aligned_cols=68  Identities=21%  Similarity=0.282  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--CCcc-c---CCHHH----HhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-G---GSPAE----VIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--g~~~-~---~~~~~----~~~~~dvii~~v~~~~   68 (257)
                      ++|.|+|+|.+|..+++.|.+.|++|+++++++++.+++.+.  +... .   ++.+.    -++++|.++++++++.
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~  309 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE  309 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence            479999999999999999999999999999999999988775  3322 1   23322    2358999999888764

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=97.32  E-value=0.0017  Score=47.10  Aligned_cols=105  Identities=22%  Similarity=0.296  Sum_probs=64.8

Q ss_pred             cCChhHHHHHHHHHHC----CCe-EEEEcCC--chhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HHH
Q 025163            7 GLGIMGKAISMNLLRN----GFK-VTVWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         7 G~G~mG~~la~~L~~~----g~~-V~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~~   75 (257)
                      |+|.||..++..|.+.    +.+ +.+++|+  .+....-...+.....+++++++  +.|+||-|++.....+.  .+-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L   80 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKAL   80 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHH
Confidence            8999999999999987    455 4456887  11112122234567889999888  89999999776555443  444


Q ss_pred             hcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           76 SKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                      .+|.+++.+-..             ... |...++++.++.+.-+.+++|
T Consensus        81 ~~G~~VVt~nk~-------------ala-~~~~~~~L~~~A~~~g~~~~~  116 (117)
T PF03447_consen   81 ERGKHVVTANKG-------------ALA-DEALYEELREAARKNGVRIYY  116 (117)
T ss_dssp             HTTCEEEES-HH-------------HHH-SHHHHHHHHHHHHHHT-EEEE
T ss_pred             HCCCeEEEECHH-------------Hhh-hHHHHHHHHHHHHHcCCEEEe
Confidence            677777553311             112 556777788887777766543

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.32  E-value=0.0034  Score=56.90  Aligned_cols=131  Identities=14%  Similarity=0.129  Sum_probs=79.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-h---HHHHHHCCCcc-cCCHHHHhhcCceEEEcc--CChHHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-K---CDELVAHGATV-GGSPAEVIKKCTITIGML--ADPAAALSAI   74 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~---~~~l~~~g~~~-~~~~~~~~~~~dvii~~v--~~~~~~~~~~   74 (257)
                      ||+|+|+|.-|.+.++.|.+.|.+|+++|.++. .   .++|.+.+... .....+.+.++|+||..-  |.....-...
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p~~~~a   89 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPGISPYRPEALAA   89 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCCCCCCCHHHHHH
Confidence            799999999999999999999999999995432 2   22454433222 112234557889988863  4333322255


Q ss_pred             HhcCCcEEecccc-CCc-c--ccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           75 TSKGGHFLEAPVS-GSK-Q--PAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        75 ~~~g~~~~~~pv~-~~~-~--~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      +..|+.++.-.-. ... .  ........-+.|  |...+...+..+|+..+.++...|++|..
T Consensus        90 ~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p  153 (468)
T PRK04690         90 AARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRAAGHRTALVGNIGVP  153 (468)
T ss_pred             HHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEcCCCCcc
Confidence            6777777653321 100 0  000112333333  33456677889999888777777777643

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.27  E-value=0.0052  Score=55.26  Aligned_cols=129  Identities=16%  Similarity=0.174  Sum_probs=80.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchh--HHHHHHCCCcccCC--HHHHhhcCceEEEcc--CChHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVGGS--PAEVIKKCTITIGML--ADPAAALSA   73 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~--~~~l~~~g~~~~~~--~~~~~~~~dvii~~v--~~~~~~~~~   73 (257)
                      ||.|||.|..|.+.++.|.+.  |++|+++|.++..  .+.|.+ |+.....  ..+.+.++|+||...  |.....-..
T Consensus         9 ~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~~   87 (438)
T PRK04663          9 NVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQQ   87 (438)
T ss_pred             eEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHHH
Confidence            689999999999999999988  5889999976432  234543 7665211  233457789888753  433222224


Q ss_pred             HHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChHH
Q 025163           74 ITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNGA  133 (257)
Q Consensus        74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~  133 (257)
                      ...+|+.++.-+-......  ..+..-+.|  |...+.+.+..+|+..+.++...|++|...
T Consensus        88 a~~~gi~i~~~~el~~~~~--~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~~  147 (438)
T PRK04663         88 VLAAGIPVVGDIELFAWAV--DKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVPA  147 (438)
T ss_pred             HHHCCCcEEEHHHHHHhhc--CCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHHH
Confidence            5667877776432211111  123333333  344556678889998888776666676553

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.26  E-value=0.0011  Score=56.30  Aligned_cols=66  Identities=17%  Similarity=0.188  Sum_probs=47.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCc---hhHHHHHH----CC--Ccc--c--C---CHHHHhhcCceEEEcc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVA----HG--ATV--G--G---SPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~---~~~~~l~~----~g--~~~--~--~---~~~~~~~~~dvii~~v   64 (257)
                      ++.|+|+|.+|.+++..|++.|.. |++++|++   ++.+++.+    .+  ...  .  .   +..+.++.+|+||-|+
T Consensus       128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT  207 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT  207 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence            478999999999999999999986 99999997   66666543    11  111  1  1   1223445789999999


Q ss_pred             CCh
Q 025163           65 ADP   67 (257)
Q Consensus        65 ~~~   67 (257)
                      |..
T Consensus       208 p~G  210 (289)
T PRK12548        208 LVG  210 (289)
T ss_pred             CCC
Confidence            865

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.25  E-value=0.00082  Score=57.75  Aligned_cols=65  Identities=17%  Similarity=0.234  Sum_probs=47.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCc--hhH----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKC----DELVAH------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~--~~~----~~l~~~------g~~~~~~~~~~~~~~dvi   60 (257)
                      +||+|||+ |.+|..++..|...|.       ++.++|+++  +++    .++...      +.....+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999998874       799999964  222    222221      122334555778899999


Q ss_pred             EEccC
Q 025163           61 IGMLA   65 (257)
Q Consensus        61 i~~v~   65 (257)
                      |++.-
T Consensus        84 VitAG   88 (323)
T TIGR01759        84 LLVGA   88 (323)
T ss_pred             EEeCC
Confidence            99864

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=97.25  E-value=0.0031  Score=50.35  Aligned_cols=89  Identities=19%  Similarity=0.323  Sum_probs=59.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Cc-------cc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--AT-------VG   47 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~-------~~   47 (257)
                      .||.|||+|.+|..++++|+..|. +++++|.+.=                   |.+.    +++.+  +.       ..
T Consensus        22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~~  101 (197)
T cd01492          22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDIS  101 (197)
T ss_pred             CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCcc
Confidence            379999999999999999999996 5988875421                   1111    22211  11       12


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS   89 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~   89 (257)
                      ....+..++.|+||.|..+......   .....++.++.+.+.+.
T Consensus       102 ~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~  146 (197)
T cd01492         102 EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGL  146 (197)
T ss_pred             ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            2344567899999999876544332   55667888877766543

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.25  E-value=0.00059  Score=57.89  Aligned_cols=64  Identities=22%  Similarity=0.357  Sum_probs=46.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHH----HHHHC------CCcccCC-HHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCD----ELVAH------GATVGGS-PAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~----~l~~~------g~~~~~~-~~~~~~~~dvii~~v   64 (257)
                      |||+|||+|.+|.++|..|...+  .++.++|+++++.+    +|...      ......+ --+.++++|+|+++.
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA   77 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA   77 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence            79999999999999999997665  48999999855432    23221      1222221 245678999999987

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.25  E-value=0.012  Score=50.48  Aligned_cols=70  Identities=20%  Similarity=0.176  Sum_probs=56.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh-hcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI-KKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~-~~~dvii~~v~~~~~~~~   72 (257)
                      +|+|+|+|.+|..-.+.....|.+|+.++|+++|.+..++.|+...     .+..+.+ +.+|+|+.+++ ....+.
T Consensus       169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~  244 (339)
T COG1064         169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEP  244 (339)
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHH
Confidence            6899999999999888888899999999999999999999886422     1222333 23999999999 666666

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.24  E-value=0.00088  Score=57.18  Aligned_cols=66  Identities=18%  Similarity=0.258  Sum_probs=46.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCch--hHHHHHHC----CCcc--c-CCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLS--KCDELVAH----GATV--G-GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~--~~~~l~~~----g~~~--~-~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+ |.+|..+|..|...+.  ++.++|++..  ...+|...    .++.  . +++.+.++++|+||++.-.
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~   78 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV   78 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence            89999999 9999999999998884  7999998721  12233332    1221  1 2345778999999998643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=97.21  E-value=0.0011  Score=57.35  Aligned_cols=83  Identities=16%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHCC--CcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+ |..|..+.+.|.+++|.   +....++.+.-+.+.-.|  +...+...+.++++|+||+|+|.....+.  
T Consensus         2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~~   81 (334)
T PRK14874          2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYAP   81 (334)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHHH
Confidence            68999987 99999999999998875   466655444333332222  22221112334789999999998876664  


Q ss_pred             HHHhcCCcEEe
Q 025163           73 AITSKGGHFLE   83 (257)
Q Consensus        73 ~~~~~g~~~~~   83 (257)
                      .+...|..++|
T Consensus        82 ~~~~~G~~VID   92 (334)
T PRK14874         82 KAAAAGAVVID   92 (334)
T ss_pred             HHHhCCCEEEE
Confidence            44566777776

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.21  E-value=0.0026  Score=56.06  Aligned_cols=87  Identities=14%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC-------------------chhHHHHHH----C--CCcc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT-------------------LSKCDELVA----H--GATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~-------------------~~~~~~l~~----~--g~~~--------~   47 (257)
                      ||.|||+|..|..++..|++.|. +++++|++                   ..|++.+.+    .  .+.+        .
T Consensus       137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~  216 (376)
T PRK08762        137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVTS  216 (376)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            79999999999999999999997 69999887                   234443322    1  1211        1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||.|+-+......   .....++.++.+.+.+
T Consensus       217 ~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g  260 (376)
T PRK08762        217 DNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFR  260 (376)
T ss_pred             HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            1334567899999999887654322   5667788888877654

>PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1

Probab=97.21  E-value=0.0043  Score=45.54  Aligned_cols=70  Identities=14%  Similarity=0.171  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHcCCC--HHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHH------------HHHHHH
Q 025163          146 MMNTFSEGLVLAEKSGLD--PRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD------------MRLALA  211 (257)
Q Consensus       146 ~~~~~~E~~~l~~~~g~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd------------~~~~~~  211 (257)
                      ....+.|+..++++.|++  ++.+.+.+.......                 +.....|+.|            .+.+++
T Consensus        40 ~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~-----------------~~~~~SM~~D~~~gr~tEid~i~G~vv~  102 (125)
T PF08546_consen   40 IRALMREVIAVARALGIPLDPDDLEEAIERLIRST-----------------PDNRSSMLQDIEAGRPTEIDYINGYVVR  102 (125)
T ss_dssp             HHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCT-----------------TTT--HHHHHHHTTB--SHHHTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhc-----------------CCccccHHHHHHHcccccHHHHHHHHHH
Confidence            356889999999999964  333333332110000                 0001223333            388999


Q ss_pred             HHhhcCCCchHHHHHHHHHHH
Q 025163          212 LGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       212 ~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      .++++|+++|..+.++++++.
T Consensus       103 ~a~~~gv~~P~~~~i~~lvk~  123 (125)
T PF08546_consen  103 LAKKHGVPTPVNETIYALVKA  123 (125)
T ss_dssp             HHHHTT---HHHHHHHHHHHH
T ss_pred             HHHHHCCCCcHHHHHHHHHHH
Confidence            999999999999999998874

1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B ....

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.0019  Score=54.24  Aligned_cols=117  Identities=19%  Similarity=0.295  Sum_probs=78.7

Q ss_pred             eEEEEcCChh-HHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~m-G~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|.+ |.+++..|.+.|..|++++..              +.++.+.++++|+||++++.+.......-..|..
T Consensus       160 ~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~~~ik~gav  225 (285)
T PRK14189        160 HAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTADMVKPGAT  225 (285)
T ss_pred             EEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence            6899999988 999999999999999998653              2367788899999999999877665555567788


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+....    .+.    ..||-+ ++.+.+.-..+.+   .-|.+|.-...-+..|++.+
T Consensus       226 VIDVGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~Ll~N~~~a  277 (285)
T PRK14189        226 VIDVGMNRDD----AGK----LCGDVD-FAGVKEVAGYITP---VPGGVGPMTITMLLVNTIEA  277 (285)
T ss_pred             EEEccccccC----CCC----eeCCcc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHHHH
Confidence            8887765321    122    223332 2334443332221   12346666667777776643

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.20  E-value=0.0009  Score=57.54  Aligned_cols=65  Identities=14%  Similarity=0.172  Sum_probs=47.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCchh--H----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--C----DELVAH------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~~dvi   60 (257)
                      +||+|||+ |.+|..++..|...|.       ++.++|++++.  +    .++...      ......+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999999998775       79999995432  2    222221      123334555778899999


Q ss_pred             EEccC
Q 025163           61 IGMLA   65 (257)
Q Consensus        61 i~~v~   65 (257)
                      |++.-
T Consensus        83 vitaG   87 (322)
T cd01338          83 LLVGA   87 (322)
T ss_pred             EEeCC
Confidence            99853

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.17  E-value=0.0014  Score=56.88  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC---eEEEE--cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~---~V~~~--~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+ |..|..+.+.|.+++|   ++..+  .|+..+..........+.....+.++++|++|+|+|.....+.  
T Consensus         8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~~~   87 (344)
T PLN02383          8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKFGP   87 (344)
T ss_pred             CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHHHH
Confidence            58999987 9999999999999887   34333  3333322212111112221122445789999999999866654  


Q ss_pred             HHHhcCCcEEe
Q 025163           73 AITSKGGHFLE   83 (257)
Q Consensus        73 ~~~~~g~~~~~   83 (257)
                      .+...|+.++|
T Consensus        88 ~~~~~g~~VID   98 (344)
T PLN02383         88 IAVDKGAVVVD   98 (344)
T ss_pred             HHHhCCCEEEE
Confidence            34456777777

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.15  E-value=0.00068  Score=53.13  Aligned_cols=67  Identities=13%  Similarity=0.207  Sum_probs=45.6

Q ss_pred             eEEEEcCChhHHHH--HHHHHHC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEEc
Q 025163            2 EVGFLGLGIMGKAI--SMNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         2 kI~iIG~G~mG~~l--a~~L~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~~   63 (257)
                      ||+|||+|+.-.+.  -.-+...    +.+|.++|+++++++....        .|    +..++|.+++++++|+||.+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~   80 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ   80 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence            89999999887663  2223322    2389999999998875422        23    34578999999999999998


Q ss_pred             cCChH
Q 025163           64 LADPA   68 (257)
Q Consensus        64 v~~~~   68 (257)
                      +-...
T Consensus        81 irvGg   85 (183)
T PF02056_consen   81 IRVGG   85 (183)
T ss_dssp             --TTH
T ss_pred             eeecc
Confidence            87653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.13  E-value=0.0067  Score=54.78  Aligned_cols=129  Identities=12%  Similarity=0.115  Sum_probs=75.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc-ccCCHHHHhhcCceEEEc--cCChHHHHHHHHhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGM--LADPAAALSAITSK   77 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~~~dvii~~--v~~~~~~~~~~~~~   77 (257)
                      ||.|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+...++|+||..  +|.....-...+..
T Consensus         8 ~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~   86 (454)
T PRK01368          8 KIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF   86 (454)
T ss_pred             EEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence            79999999999999999994 99999999665443333221 111 111223445678988875  34332222245566


Q ss_pred             CCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           78 GGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        78 g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      |+.+++-.-...... ...+..-+.|  |...+...+..+|+..|.++...|++|..
T Consensus        87 gi~v~~e~el~~~~~-~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p  142 (454)
T PRK01368         87 NIPITSDIDLLFEKS-KNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP  142 (454)
T ss_pred             CCceecHHHHHHHHh-cCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence            776655332211110 1112333334  33455667889999888877667767644

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=97.13  E-value=0.0015  Score=55.11  Aligned_cols=66  Identities=24%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----CCc--ccCCH---HHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GAT--VGGSP---AEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g~~--~~~~~---~~~~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|..|.+++..|.+.|. +|+++||+.++.+++.+.     +..  ...+.   .+....+|+||=|+|-.
T Consensus       129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~G  205 (283)
T PRK14027        129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG  205 (283)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCC
Confidence            58899999999999999999986 799999999999888653     110  11122   23456789999998854

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.11  E-value=0.0051  Score=51.64  Aligned_cols=116  Identities=18%  Similarity=0.289  Sum_probs=77.7

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-+. +|.+++..|.++|..|+++++.              +.++.+.++++|+||.++..+..+....-..|..
T Consensus       161 ~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~~~vk~gav  226 (285)
T PRK10792        161 NAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPGEWIKPGAI  226 (285)
T ss_pred             EEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccHHHcCCCcE
Confidence            689999998 9999999999999999999764              2367888999999999997666655545567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      .+|..+..-.    .+.    ..||-+ ++.+.+.-..+..   .-|.+|.-...-+..|++.
T Consensus       227 VIDvGin~~~----~gk----~~GDvd-~~~~~~~a~~itP---vPGGVGp~T~a~L~~N~~~  277 (285)
T PRK10792        227 VIDVGINRLE----DGK----LVGDVE-FETAAERASWITP---VPGGVGPMTVATLLENTLQ  277 (285)
T ss_pred             EEEccccccc----CCC----cCCCcC-HHHHHhhccCcCC---CCCCChHHHHHHHHHHHHH
Confidence            8887754321    122    223332 2334444322221   1233566666667777653

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=97.11  E-value=0.003  Score=53.52  Aligned_cols=80  Identities=20%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------HH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------AI   74 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------~~   74 (257)
                      .+||||+|.+|+.+|.++..-|..|+.||.- ...++....|++.. +.+|++..+|+|-+-+|-....+.       ..
T Consensus       148 TLgvlG~GrIGseVA~r~k~~gm~vI~~dpi-~~~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~  225 (406)
T KOG0068|consen  148 TLGVLGLGRIGSEVAVRAKAMGMHVIGYDPI-TPMALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAK  225 (406)
T ss_pred             EEEEeecccchHHHHHHHHhcCceEEeecCC-CchHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHH
Confidence            5899999999999999999999888888752 22234555688777 799999999999999987666555       22


Q ss_pred             HhcCCcEEe
Q 025163           75 TSKGGHFLE   83 (257)
Q Consensus        75 ~~~g~~~~~   83 (257)
                      -.+|+..+.
T Consensus       226 mKkGVriIN  234 (406)
T KOG0068|consen  226 MKKGVRIIN  234 (406)
T ss_pred             hhCCcEEEE
Confidence            245665554

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.11  E-value=0.0019  Score=50.21  Aligned_cols=64  Identities=25%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--------------------------CCHHHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--------------------------GSPAEVI   54 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--------------------------~~~~~~~   54 (257)
                      .||.|+|.|..|..-+..|...|++|+.+|.++++.+++...+....                          ..+.+.+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i  100 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI  100 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence            37999999999999999999999999999999998888777643211                          1234566


Q ss_pred             hcCceEEEcc
Q 025163           55 KKCTITIGML   64 (257)
Q Consensus        55 ~~~dvii~~v   64 (257)
                      +.+|+||.+.
T Consensus       101 ~~~d~vI~~~  110 (168)
T PF01262_consen  101 APADIVIGNG  110 (168)
T ss_dssp             HH-SEEEEHH
T ss_pred             hhCcEEeeec
Confidence            7899999754

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06153 hypothetical protein; Provisional

Probab=97.11  E-value=0.0037  Score=54.51  Aligned_cols=86  Identities=12%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc----------------------hhHHHHHH----CC--Ccc-----c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL----------------------SKCDELVA----HG--ATV-----G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~----------------------~~~~~l~~----~g--~~~-----~   47 (257)
                      +|+|||+|..|+.++..|++.|. +++++|-+.                      .|++.+++    .+  +..     .
T Consensus       178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~I~  257 (393)
T PRK06153        178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEYID  257 (393)
T ss_pred             cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeecCC
Confidence            79999999999999999999996 688887541                      12222221    11  211     1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      .+..+.+.++|+||.|+.+......   .+...++.++++.+.
T Consensus       258 ~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~  300 (393)
T PRK06153        258 EDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG  300 (393)
T ss_pred             HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence            1222456789999999998776443   566779999986654

>PRK08328 hypothetical protein; Provisional

Probab=97.10  E-value=0.0043  Score=50.78  Aligned_cols=87  Identities=17%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH------------------------HHHC--CCcc--------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE------------------------LVAH--GATV--------   46 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~------------------------l~~~--g~~~--------   46 (257)
                      ||.|||+|..|+.++..|++.|. +++++|.+.-....                        +.+.  .+.+        
T Consensus        29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~~  108 (231)
T PRK08328         29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRLS  108 (231)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence            79999999999999999999996 68888755321111                        1111  1111        


Q ss_pred             cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           47 GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        47 ~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      ..++.+.++++|+||.|+-+......   .....++.++.+.+.+
T Consensus       109 ~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g  153 (231)
T PRK08328        109 EENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEG  153 (231)
T ss_pred             HHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeecc
Confidence            12344567899999999987544322   4566788888776654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.09  E-value=0.0015  Score=58.24  Aligned_cols=65  Identities=18%  Similarity=0.259  Sum_probs=49.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC-------CC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~-------g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|||+ |.+|..+|..|+..       +.  ++.++|++.++++-    |.+.      .+.+..+..+.++++|+||
T Consensus       102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV  181 (444)
T PLN00112        102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL  181 (444)
T ss_pred             EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence            8999999 99999999999987       54  78999999887543    2221      2333345567789999999


Q ss_pred             EccCC
Q 025163           62 GMLAD   66 (257)
Q Consensus        62 ~~v~~   66 (257)
                      ++.-.
T Consensus       182 itAG~  186 (444)
T PLN00112        182 LIGAK  186 (444)
T ss_pred             ECCCC
Confidence            98643

>PRK05442 malate dehydrogenase; Provisional

Probab=97.08  E-value=0.001  Score=57.27  Aligned_cols=65  Identities=15%  Similarity=0.243  Sum_probs=46.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCch--hH----HHHHHC------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KC----DELVAH------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~--~~----~~l~~~------g~~~~~~~~~~~~~~dvi   60 (257)
                      +||+|||+ |.+|..+|..|...+.       ++.++|++++  ++    .++...      ......+..+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999999987653       7999999543  22    222221      233444555778899999


Q ss_pred             EEccC
Q 025163           61 IGMLA   65 (257)
Q Consensus        61 i~~v~   65 (257)
                      |++--
T Consensus        85 VitaG   89 (326)
T PRK05442         85 LLVGA   89 (326)
T ss_pred             EEeCC
Confidence            99753

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.07  E-value=0.00092  Score=58.95  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=52.1

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc---c---------------c--CCHHH---Hhhc
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLSKCDELVAHGAT---V---------------G--GSPAE---VIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~---~---------------~--~~~~~---~~~~   56 (257)
                      |||.++|+|+||. .++..|.+.|++|+++|++++.++.++++|..   .               .  .+.++   .+.+
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~   80 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEAVIEAIAE   80 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHHHHHHhcC
Confidence            8999999999998 55888888999999999999999999887631   0               0  02122   2347


Q ss_pred             CceEEEccCChH
Q 025163           57 CTITIGMLADPA   68 (257)
Q Consensus        57 ~dvii~~v~~~~   68 (257)
                      +|+|.++|+...
T Consensus        81 ~dlvt~~v~~~~   92 (381)
T PRK02318         81 ADLVTTAVGPNI   92 (381)
T ss_pred             CCEEEeCCCccc
Confidence            799999887543

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.07  E-value=0.0013  Score=56.61  Aligned_cols=65  Identities=14%  Similarity=0.174  Sum_probs=46.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-------CeEEEEcCCch--hHHH----HHH------CCCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-------~~V~~~~r~~~--~~~~----l~~------~g~~~~~~~~~~~~~~dvi   60 (257)
                      +||+|+|+ |.+|..++..|...+       .+|.++|+++.  +++.    +.+      ..+....+..+.++++|+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            48999999 999999999999754       48999999653  1221    111      0122345666788999999


Q ss_pred             EEccC
Q 025163           61 IGMLA   65 (257)
Q Consensus        61 i~~v~   65 (257)
                      |.+.-
T Consensus        83 I~tAG   87 (325)
T cd01336          83 ILVGA   87 (325)
T ss_pred             EEeCC
Confidence            99753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.07  E-value=0.0021  Score=56.52  Aligned_cols=82  Identities=13%  Similarity=0.083  Sum_probs=54.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCC-------CcccCCHH-HHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~-~~~~~~dvii~~v~~~~~~   70 (257)
                      |||+|+|+ |..|..+.+.|.++ .++|+.+.++.++-+.+....       .....+.+ +.++++|++|+|+|.....
T Consensus        39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~~s~  118 (381)
T PLN02968         39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHGTTQ  118 (381)
T ss_pred             cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHHHHH
Confidence            58999998 99999999999998 678998877654433332211       11111222 2247899999999987555


Q ss_pred             HH--HHHhcCCcEEe
Q 025163           71 LS--AITSKGGHFLE   83 (257)
Q Consensus        71 ~~--~~~~~g~~~~~   83 (257)
                      +.  .+ ..|..++|
T Consensus       119 ~i~~~~-~~g~~VID  132 (381)
T PLN02968        119 EIIKAL-PKDLKIVD  132 (381)
T ss_pred             HHHHHH-hCCCEEEE
Confidence            54  33 35666666

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=97.04  E-value=0.0019  Score=54.19  Aligned_cols=64  Identities=22%  Similarity=0.161  Sum_probs=49.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|..+.+++..|.+.|. +|++++|++++.+.+.+. +.....++  ....+|+||=|+|-.
T Consensus       124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~G  189 (272)
T PRK12550        124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIG  189 (272)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccc
Confidence            58899999999999999999996 599999999999988763 22111111  124589999999865

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.04  E-value=0.0023  Score=45.41  Aligned_cols=67  Identities=19%  Similarity=0.164  Sum_probs=48.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++.|||.|.+|..=++.|.+.|.+|++++.+.+..+    ..++. .....+.++++++||.|+.+....+.
T Consensus         9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n~~   76 (103)
T PF13241_consen    9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELNEA   76 (103)
T ss_dssp             EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHHHH
Confidence            689999999999999999999999999998761112    22222 12334557789999999988766554

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=97.04  E-value=0.021  Score=47.09  Aligned_cols=121  Identities=19%  Similarity=0.216  Sum_probs=76.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-Ce-EEEEcCCchhH-----HHHH---HCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-FK-VTVWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~~-V~~~~r~~~~~-----~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|.|+ |.||..+.+.+.+.. ++ +-.++|.++..     ..+.   ..|+.+.+++.....++|++|=.+.+...
T Consensus         3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P~~~   82 (266)
T COG0289           3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTPEAT   82 (266)
T ss_pred             ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCchhh
Confidence            79999999 999999999999876 45 45568865422     1222   23566677777777899999976655444


Q ss_pred             HHH--HHHhcCCcEEeccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcCCeEEeCC--CChHHHHHHHHH
Q 025163           70 ALS--AITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKAFFLGE--VGNGAKMKLVVN  140 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~g~--~g~a~~~kl~~n  140 (257)
                      .+.  .....+...                 ++-. |-+++..++++++-+.++  +++.++  +|...+.|++..
T Consensus        83 ~~~l~~~~~~~~~l-----------------VIGTTGf~~e~~~~l~~~a~~v~--vv~a~NfSiGvnll~~l~~~  139 (266)
T COG0289          83 LENLEFALEHGKPL-----------------VIGTTGFTEEQLEKLREAAEKVP--VVIAPNFSLGVNLLFKLAEQ  139 (266)
T ss_pred             HHHHHHHHHcCCCe-----------------EEECCCCCHHHHHHHHHHHhhCC--EEEeccchHHHHHHHHHHHH
Confidence            443  333444322                 1111 226677777888777743  566666  555555554433

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.03  E-value=0.011  Score=53.09  Aligned_cols=128  Identities=17%  Similarity=0.177  Sum_probs=77.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh--HHHHHHCCCcccC--CHHHHhhcCceEEEcc--CChHHHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML--ADPAAALSAIT   75 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~--~~~l~~~g~~~~~--~~~~~~~~~dvii~~v--~~~~~~~~~~~   75 (257)
                      +|.|||.|..|.+.++.|.+.|++|+++|.++..  .+.+. .|+....  ...+.+++.|++|..-  |.....-....
T Consensus         8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~   86 (438)
T PRK03806          8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA   86 (438)
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence            6999999999999999999999999999975442  23443 3665432  2334456788766543  22222222455


Q ss_pred             hcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           76 SKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ..|+.++.-+-.-...  ......-+.|  |...+...+..+|+..+.++...|.+|..
T Consensus        87 ~~g~~v~~~~el~~~~--~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p  143 (438)
T PRK03806         87 DAGIEIVGDIELFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP  143 (438)
T ss_pred             HCCCeEEEHHHHHhhh--cCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchh
Confidence            6787766543211111  1112223333  34566677888998888776656655543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.03  E-value=0.0023  Score=58.12  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=41.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~   45 (257)
                      |+.|||+|.+|...+..+...|.+|+++|+++++++...+.|++
T Consensus       167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~  210 (509)
T PRK09424        167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAE  210 (509)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCe
Confidence            78999999999999999999999999999999999999888876

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.02  E-value=0.0017  Score=55.75  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=41.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~   63 (257)
                      ||.|||+|.||...+++|.++|. +|++.+|+.+. ..+.+..   . ...+....+|+||.|
T Consensus       176 ~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~~~~~~~---~-~~~~~~~~~DvVIs~  233 (338)
T PRK00676        176 SLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-LPYRTVV---R-EELSFQDPYDVIFFG  233 (338)
T ss_pred             EEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-cchhhhh---h-hhhhcccCCCEEEEc
Confidence            78999999999999999999995 69999999753 1111100   0 111334688999987

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=97.02  E-value=0.002  Score=54.87  Aligned_cols=63  Identities=25%  Similarity=0.266  Sum_probs=48.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH---HHHHHC-C-----------CcccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC---DELVAH-G-----------ATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~---~~l~~~-g-----------~~~~~~~~~~~~~~dvii~~   63 (257)
                      |+|+|-|+ |.+|+.+.+.|+++||.|...-|+++.-   +.|.+. |           +.-..+..+++++||.||=+
T Consensus         7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~   85 (327)
T KOG1502|consen    7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT   85 (327)
T ss_pred             cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence            57889977 9999999999999999999999998862   223332 1           12234778899999999854

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.01  E-value=0.0026  Score=54.66  Aligned_cols=83  Identities=18%  Similarity=0.241  Sum_probs=57.4

Q ss_pred             EEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHH-C------------------CCcccCCHHHHhhcCceEE
Q 025163            3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H------------------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~-~------------------g~~~~~~~~~~~~~~dvii   61 (257)
                      |+|+|+|.+|...++.+.+. +.+|+ +.|.+++....+.. .                  |+.+..+++++..++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            68999999999999998764 45654 45777775444443 1                  2334557889989999999


Q ss_pred             EccCChHHHHH--HHHh--cCCcEEecc
Q 025163           62 GMLADPAAALS--AITS--KGGHFLEAP   85 (257)
Q Consensus        62 ~~v~~~~~~~~--~~~~--~g~~~~~~p   85 (257)
                      .|+|.......  .+..  .+..++++|
T Consensus        81 e~Tp~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        81 DATPGGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             ECCCCCCChhhHHHHHhCCcCEEEECCC
Confidence            99998766544  3333  344566666

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.00  E-value=0.0035  Score=56.89  Aligned_cols=85  Identities=18%  Similarity=0.158  Sum_probs=61.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCC--------------------------HHHHh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGS--------------------------PAEVI   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~--------------------------~~~~~   54 (257)
                      |+.|+|+|.+|...+..+...|..|+++|+++++.+.....|... ..+                          ..+.+
T Consensus       166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~  245 (511)
T TIGR00561       166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA  245 (511)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence            789999999999999999999999999999999988888776543 111                          23445


Q ss_pred             hcCceEEEcc-----CChHHHHH---HHHhcCCcEEeccc
Q 025163           55 KKCTITIGML-----ADPAAALS---AITSKGGHFLEAPV   86 (257)
Q Consensus        55 ~~~dvii~~v-----~~~~~~~~---~~~~~g~~~~~~pv   86 (257)
                      +++|+||.|+     |.+.....   ..-..|..++|-..
T Consensus       246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence            7899999998     55422222   22234556666443

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.00  E-value=0.0035  Score=51.60  Aligned_cols=87  Identities=17%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Cc-------cc-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--AT-------VG-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~-------~~-   47 (257)
                      ||.|+|+|.+|+.++..|++.|. +++++|.+.=                   |++.    +.+.+  +.       .. 
T Consensus        26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i~~  105 (240)
T TIGR02355        26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKLDD  105 (240)
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccCCH
Confidence            79999999999999999999995 6888876532                   1221    22111  11       11 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||.|+-+......   .....++.++.+.+.+
T Consensus       106 ~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g  149 (240)
T TIGR02355       106 AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIR  149 (240)
T ss_pred             HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            1344567899999999987765333   5556788888766544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd00704 MDH Malate dehydrogenase

Probab=97.00  E-value=0.0011  Score=57.03  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=46.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCc--hhHHH----HHHC------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDE----LVAH------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~--~~~~~----l~~~------g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|||+ |.+|..++..|...|.       ++.++|+++  ++++-    +.+.      +.....+..+.+++||+||
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            8999999 9999999999997652       599999987  53221    1111      1233346668889999999


Q ss_pred             EccC
Q 025163           62 GMLA   65 (257)
Q Consensus        62 ~~v~   65 (257)
                      ++--
T Consensus        82 itAG   85 (323)
T cd00704          82 LVGA   85 (323)
T ss_pred             EeCC
Confidence            9753

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.99  E-value=0.036  Score=46.30  Aligned_cols=117  Identities=15%  Similarity=0.137  Sum_probs=67.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCch-------------------hHHHHHH----CC--Ccc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLS-------------------KCDELVA----HG--ATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~-------------------~~~~l~~----~g--~~~--------~   47 (257)
                      +|.|+|+|.+|+.++..|++.| .+++++|.+.-                   |++.+++    .+  +++        .
T Consensus        32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~  111 (268)
T PRK15116         32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP  111 (268)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence            6999999999999999999999 57888876521                   1222222    11  111        1


Q ss_pred             CCHHHHh-hcCceEEEccCChHHHHH---HHHhcCCcEEeccccCCccccccCcEE-EEecCChhhHHHHHHHHHH
Q 025163           48 GSPAEVI-KKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKALYDEAISALNV  118 (257)
Q Consensus        48 ~~~~~~~-~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~l~~  118 (257)
                      .+..+.+ .+.|+||.|+-+......   .....++.++...-.++......-+.. +.-.-.......++..|+.
T Consensus       112 e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp~~~~~~di~~t~~~pla~~~R~~lr~  187 (268)
T PRK15116        112 DNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDPTQIQVVDLAKTIQDPLAAKLRERLKS  187 (268)
T ss_pred             hhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCCCeEEEEeeecccCChHHHHHHHHHHH
Confidence            2333444 368999999876544332   556678888875433332221111111 1111223445678888887

>PLN00106 malate dehydrogenase

Probab=96.99  E-value=0.0026  Score=54.65  Aligned_cols=65  Identities=14%  Similarity=0.240  Sum_probs=47.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchh--HHHHHHC----CCc---ccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH----GAT---VGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~--~~~l~~~----g~~---~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||+|||+ |.+|..++..|...+.  ++.++|+++..  ..+|...    .+.   -.+++.++++++|+||++.-
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG   95 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG   95 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence            38999999 9999999999997664  89999997621  1233321    111   13345788899999999864

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.99  E-value=0.002  Score=57.52  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=50.6

Q ss_pred             CeEEEEcCChh-HHHHHHHHHHC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~m-G~~la~~L~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+. ...+...|+..     +-+|.++|+++++++....        .|    +..++|.+++++++|+||.
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~   80 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN   80 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence            89999999984 33455666644     3589999999988765322        23    3567899999999999999


Q ss_pred             ccCChH
Q 025163           63 MLADPA   68 (257)
Q Consensus        63 ~v~~~~   68 (257)
                      ..-...
T Consensus        81 ~irvGg   86 (425)
T cd05197          81 QFRVGG   86 (425)
T ss_pred             eeecCC
Confidence            875443

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.97  E-value=0.0027  Score=52.45  Aligned_cols=40  Identities=33%  Similarity=0.377  Sum_probs=35.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      |+|.|+|+ |.+|..++..|+++||+|++..|++++.+.+.
T Consensus        18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~   58 (251)
T PLN00141         18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSL   58 (251)
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhc
Confidence            57999995 99999999999999999999999988765543

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=96.97  E-value=0.0016  Score=50.59  Aligned_cols=78  Identities=21%  Similarity=0.292  Sum_probs=53.9

Q ss_pred             eEEEEcCChhHHHHHHHHH--HCCCe-EEEEcCCchhHHHHHHCCCcc--cCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            2 EVGFLGLGIMGKAISMNLL--RNGFK-VTVWNRTLSKCDELVAHGATV--GGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~--~~g~~-V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      ++.+||+|++|.+++..=.  ++|++ +.++|.+++++-.-.. ++.+  .+++++.++  +.|+.++|||...+.+.  
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~-~v~V~~~d~le~~v~~~dv~iaiLtVPa~~AQ~vad  164 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIG-DVPVYDLDDLEKFVKKNDVEIAILTVPAEHAQEVAD  164 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccC-CeeeechHHHHHHHHhcCccEEEEEccHHHHHHHHH
Confidence            6889999999999987643  45666 6668999886543222 2222  234555555  78999999998776665  


Q ss_pred             HHHhcCCc
Q 025163           73 AITSKGGH   80 (257)
Q Consensus        73 ~~~~~g~~   80 (257)
                      .+...|+.
T Consensus       165 ~Lv~aGVk  172 (211)
T COG2344         165 RLVKAGVK  172 (211)
T ss_pred             HHHHcCCc
Confidence            66666654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=96.97  E-value=0.0063  Score=53.14  Aligned_cols=88  Identities=16%  Similarity=0.226  Sum_probs=59.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHH----HHHC--CCcc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDE----LVAH--GATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~----l~~~--g~~~--------~   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.                   .|++.    +++.  .+.+        .
T Consensus        30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~  109 (355)
T PRK05597         30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW  109 (355)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence            79999999999999999999996 688888764                   12222    2221  1111        1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS   89 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~   89 (257)
                      .+..+.++++|+||.|+-+......   .....++.++.+.+.+-
T Consensus       110 ~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~  154 (355)
T PRK05597        110 SNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGF  154 (355)
T ss_pred             HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecC
Confidence            1234677899999999876544332   55567888888766544

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.96  E-value=0.2  Score=42.67  Aligned_cols=232  Identities=18%  Similarity=0.181  Sum_probs=134.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHH---CC-----------------C----cccCCHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA---HG-----------------A----TVGGSPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~---~g-----------------~----~~~~~~~~~~~~   56 (257)
                      ++-++|+|...--+|.-|..+| ..+-+++|-..+-+++.+   .+                 -    ....+++++..+
T Consensus         6 ~vLllGtGpvaIQlAv~l~~h~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~kd~a~~~~d   85 (431)
T COG4408           6 PVLLLGTGPVAIQLAVDLSAHGDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIKDLAQAVGD   85 (431)
T ss_pred             ceeEeecCcHHHHHHHHHHhccCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHhhHHHhhch
Confidence            5789999999999999999987 478889885555555543   11                 0    123467788888


Q ss_pred             CceEEEccCChHHHHH-------HHHhcCCcEEeccccCCcc--------------------------------------
Q 025163           57 CTITIGMLADPAAALS-------AITSKGGHFLEAPVSGSKQ--------------------------------------   91 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~-------~~~~~g~~~~~~pv~~~~~--------------------------------------   91 (257)
                      -+.+|+|||.+.-.+.       .+...-...+-.|.+|...                                      
T Consensus        86 wqtlilav~aDaY~dvlqqi~~e~L~~vk~viLiSptfGsn~lv~~~mnk~~~daeViS~SsY~~dTk~id~~~p~~alT  165 (431)
T COG4408          86 WQTLILAVPADAYYDVLQQIPWEALPQVKSVILISPTFGSNLLVQNLMNKAGRDAEVISLSSYYADTKYIDAEQPNRALT  165 (431)
T ss_pred             hheEEEEeecHHHHHHHhcCCHhHhccccEEEEecccccccHHHHHHHhhhCCCceEEEeehhcccceeecccCcchHHH
Confidence            8999999998877665       1111111111122222110                                      


Q ss_pred             ccccCcEEEEec---CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHH-----------------HH-------------
Q 025163           92 PAETGQLVILSA---GEKALYDEAISALNVIGKKAFFLGEVGNGAKMK-----------------LV-------------  138 (257)
Q Consensus        92 ~~~~~~~~~~~~---g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~k-----------------l~-------------  138 (257)
                      .+.+.  .+..|   ++....+.+..++...+..+..+.++-.++...                 .+             
T Consensus       166 kavKk--riYlgs~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrnit~YVHpPlflndfsL~aif~~~~~p~yvYKl  243 (431)
T COG4408         166 KAVKK--RIYLGSQHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRNITLYVHPPLFLNDFSLQAIFYPEQRPQYVYKL  243 (431)
T ss_pred             HHHhH--heeeccCCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcccceeecCcchhhhhHHHHHhCCcCCCceeEec
Confidence            00001  13333   355667788899988887765555433332211                 11             


Q ss_pred             ------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--Cchhhh-----cc--CC-------------cccC
Q 025163          139 ------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI--ANPMFK-----GK--GP-------------TMLQ  190 (257)
Q Consensus       139 ------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~--~s~~~~-----~~--~~-------------~~~~  190 (257)
                            ...++.-+.....|.+.+..+.|+.+=.+..+++...-  ...++.     .+  .+             .++-
T Consensus       244 yPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~ddNYPV~~e~l~r~dId~F~~~~~i~QeYlLfVRYtalLv  323 (431)
T COG4408         244 YPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDDNYPVRAEMLSRRDIDEFPQLPPIEQEYLLFVRYTALLV  323 (431)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccCCCCcChhhcCccchhhcccCChHHHHHHHHHHHHHHhc
Confidence                  12333445678889999999999988777777764310  000000     00  00             0111


Q ss_pred             CCCCC-------------Cc-----------ccchH-HHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          191 SNYAP-------------AF-----------PLKHQ-QKD---MRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       191 ~~~~~-------------~~-----------~~~~~-~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                      .-|++             .|           .+.-+ ..|   +..+.-++...+++||..+....-++.+.+
T Consensus       324 DPfS~pDEqG~yfDFSAVpfr~Vy~de~gl~~lPRvP~EDy~kla~iq~la~~l~v~~Pt~dq~lt~ye~a~k  396 (431)
T COG4408         324 DPFSTPDEQGRYFDFSAVPFRTVYQDENGLWHLPRVPLEDYYKLATIQLLAGALDVVMPTADQLLTRYEQALK  396 (431)
T ss_pred             CCCCCccccCccccccccceeeeeecccccccCCCCcHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            11110             00           01111 222   477889999999999999999999998876

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=96.96  E-value=0.0031  Score=54.81  Aligned_cols=83  Identities=17%  Similarity=0.218  Sum_probs=53.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CeEEEE-cCCchhHHHHHHC-------CC-------cccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~~V~~~-~r~~~~~~~l~~~-------g~-------~~~~~~~~~~~~~dvii~~   63 (257)
                      |||+|+|+ |.||..+++.|.++. ++|... +++++.-+.+.+.       +.       .+.....+...++|+||+|
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a   80 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA   80 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence            79999996 999999999999876 576665 5443322222110       00       1111112344789999999


Q ss_pred             cCChHHHHH--HHHhcCCcEEe
Q 025163           64 LADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        64 v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      +|.....+.  .+...|...++
T Consensus        81 ~p~~~s~~~~~~~~~~G~~VID  102 (341)
T TIGR00978        81 LPSEVAEEVEPKLAEAGKPVFS  102 (341)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEE
Confidence            998876655  44556777776

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0038  Score=53.30  Aligned_cols=83  Identities=14%  Similarity=0.250  Sum_probs=53.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-----CC---cc-cCCHHHH-hhcCceEEEccCChH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA---TV-GGSPAEV-IKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-----g~---~~-~~~~~~~-~~~~dvii~~v~~~~   68 (257)
                      |||+|||+ |+.|..|.+.|..+.+ ++..+..+..+=+.+.+.     |.   .. ..++++. .+++|+||+|+|...
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~   82 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV   82 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence            58999987 9999999999998764 666665433222233221     21   11 1233443 345899999999998


Q ss_pred             HHHH--HHHhcCCcEEe
Q 025163           69 AALS--AITSKGGHFLE   83 (257)
Q Consensus        69 ~~~~--~~~~~g~~~~~   83 (257)
                      ..+.  .+.+.|...+|
T Consensus        83 s~~~v~~l~~~g~~VID   99 (349)
T COG0002          83 SAELVPELLEAGCKVID   99 (349)
T ss_pred             HHHHHHHHHhCCCeEEE
Confidence            8776  44445655555

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.92  E-value=0.0027  Score=56.83  Aligned_cols=67  Identities=10%  Similarity=0.135  Sum_probs=49.5

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+.=+ .+...|+..     +-+|+++|+++++++....        .|    +..++|..++++++|+||.
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~   80 (437)
T cd05298           1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA   80 (437)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence            8999999998622 345555543     3589999999988765422        23    4567899999999999999


Q ss_pred             ccCCh
Q 025163           63 MLADP   67 (257)
Q Consensus        63 ~v~~~   67 (257)
                      ..-..
T Consensus        81 ~irvG   85 (437)
T cd05298          81 QIRVG   85 (437)
T ss_pred             EeeeC
Confidence            87544

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=96.92  E-value=0.0066  Score=48.49  Aligned_cols=88  Identities=19%  Similarity=0.291  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch---------------------hH----HHHHHCC--Cc-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS---------------------KC----DELVAHG--AT-------   45 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~---------------------~~----~~l~~~g--~~-------   45 (257)
                      .||.|||+|.+|..++++|+..|. +++++|.+.=                     |+    +.+++.+  ++       
T Consensus        20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~   99 (198)
T cd01485          20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED   99 (198)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence            379999999999999999999996 5888875421                     11    1122211  11       


Q ss_pred             c---cCCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           46 V---GGSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        46 ~---~~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .   ..+..+..+++|+||.|..+......   .....++.++.+...|
T Consensus       100 ~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G  148 (198)
T cd01485         100 SLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYG  148 (198)
T ss_pred             cccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            1   12345567899999998766443222   5566788877765443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.92  E-value=0.006  Score=50.42  Aligned_cols=86  Identities=19%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCcc-------c-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GATV-------G-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~~-------~-   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.=                   |++.    +.+.  .+.+       . 
T Consensus        34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~  113 (245)
T PRK05690         34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLDD  113 (245)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence            79999999999999999999995 6888875421                   2221    1211  1111       1 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      .+..+.++++|+||.|+-+......   .....++.++.+.+.
T Consensus       114 ~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~  156 (245)
T PRK05690        114 DELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAI  156 (245)
T ss_pred             HHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeec
Confidence            1234567899999999977655332   455678888876543

>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase

Probab=96.91  E-value=0.012  Score=53.02  Aligned_cols=121  Identities=14%  Similarity=0.083  Sum_probs=73.3

Q ss_pred             eEEEEcCChhHH-HHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCccc--CCHHHHhhcCceEEEc--cCChHHHHHHH
Q 025163            2 EVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG--GSPAEVIKKCTITIGM--LADPAAALSAI   74 (257)
Q Consensus         2 kI~iIG~G~mG~-~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~~dvii~~--v~~~~~~~~~~   74 (257)
                      +|-|||.|.+|. ++|..|.+.|++|+++|.++.  ..+.+.+.|++..  .+......++|+||..  +|.....-...
T Consensus         1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a   80 (448)
T TIGR01081         1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV   80 (448)
T ss_pred             CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence            478999999995 688999999999999998653  2335666687654  3444444568988875  34332222245


Q ss_pred             HhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCC
Q 025163           75 TSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKK  122 (257)
Q Consensus        75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~  122 (257)
                      ...|+.++.-.-..........+..-+.|  |...+.+.+..+|+..+.+
T Consensus        81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~  130 (448)
T TIGR01081        81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLK  130 (448)
T ss_pred             HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence            66777776643321110001122223333  3455666788888876644

Alternate name: murein tripeptide ligase

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=96.91  E-value=0.0016  Score=55.73  Aligned_cols=65  Identities=26%  Similarity=0.321  Sum_probs=49.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|. |.+|..++..|++.|++|++++|+++....+...++..       ..++.++++++|+||-+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            78999985 99999999999999999999999877655444333321       1234556678899988763

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.90  E-value=0.0034  Score=53.13  Aligned_cols=66  Identities=18%  Similarity=0.170  Sum_probs=48.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc---hhHHHHHHC-C----Cc-ccCCH------HHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAH-G----AT-VGGSP------AEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~---~~~~~l~~~-g----~~-~~~~~------~~~~~~~dvii~~v~   65 (257)
                      ++.|||+|..+.+++..|...|. +|++++|++   ++.+++.+. +    .. ...++      .+...++|+||-|+|
T Consensus       126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp  205 (288)
T PRK12749        126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK  205 (288)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence            58899999999999999999885 799999995   477777652 1    11 11222      234567899999998


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      -.
T Consensus       206 ~G  207 (288)
T PRK12749        206 VG  207 (288)
T ss_pred             CC
Confidence            65

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.89  E-value=0.0076  Score=52.86  Aligned_cols=86  Identities=16%  Similarity=0.178  Sum_probs=59.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCc--c------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GAT--V------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~--~------~   47 (257)
                      +|.|||+|.+|..++.+|+..|. +++++|.+.=                   |++.    +.+.  .++  .      .
T Consensus        43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~  122 (370)
T PRK05600         43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRERLTA  122 (370)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCH
Confidence            69999999999999999999995 7999987621                   2222    2211  111  1      1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      .+..+.++++|+||-|+-+......   .....++.++.+.+.
T Consensus       123 ~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~  165 (370)
T PRK05600        123 ENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVL  165 (370)
T ss_pred             HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEe
Confidence            2445678899999999988665433   455668877776654

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.87  E-value=0.0042  Score=58.74  Aligned_cols=67  Identities=24%  Similarity=0.272  Sum_probs=50.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~   51 (257)
                      +||.|||.|..|...|..|.+.|++|+++++++.                     ..+.+.+.|+....        +..
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~  407 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE  407 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence            3799999999999999999999999999998643                     23344555654321        344


Q ss_pred             HHhhcCceEEEccCCh
Q 025163           52 EVIKKCTITIGMLADP   67 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~   67 (257)
                      +.....|.||+++-..
T Consensus       408 ~~~~~~DavilAtGa~  423 (654)
T PRK12769        408 SLLEDYDAVFVGVGTY  423 (654)
T ss_pred             HHHhcCCEEEEeCCCC
Confidence            5556799999988653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.87  E-value=0.0036  Score=52.77  Aligned_cols=116  Identities=18%  Similarity=0.267  Sum_probs=71.8

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. .|.+++..|.+.|.+|++++|..              .++.+.++++|+||.|++.+.......-..|..
T Consensus       161 ~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~v~~~~lk~gav  226 (283)
T PRK14192        161 HAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPELIKKDWIKQGAV  226 (283)
T ss_pred             EEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCcCCHHHcCCCCE
Confidence            689999998 99999999999999999998832              245566689999999996554333333345666


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      .+|..+...     .+.    ..||-+ ++.+++.-..+..   .-|.+|.-...-+..|++.+
T Consensus       227 ViDvg~n~~-----~~~----~~GDvd-~~~~~~~a~~itP---vPGGVGp~T~a~L~~n~~~~  277 (283)
T PRK14192        227 VVDAGFHPR-----DGG----GVGDIE-LQGIEEIASAYTP---VPGGVGPMTINTLIRQTVEA  277 (283)
T ss_pred             EEEEEEeec-----CCC----Cccccc-HHHhhccceEeCC---CCCcChHHHHHHHHHHHHHH
Confidence            666544311     011    124432 2333333222211   12336666677777776643

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=96.86  E-value=0.0032  Score=56.12  Aligned_cols=67  Identities=13%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-----CCeEEEEcCC-chhHHHHHH--------CC----CcccCCHHHHhhcCceEE
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELVA--------HG----ATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-----g~~V~~~~r~-~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii   61 (257)
                      |||+|||+|+.-+ .+...|+..     +-+|+++|++ +++++....        .|    +..+++.+++++++|+||
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi   80 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF   80 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence            8999999999744 455555543     2579999999 787654322        23    345779999999999999


Q ss_pred             EccCCh
Q 025163           62 GMLADP   67 (257)
Q Consensus        62 ~~v~~~   67 (257)
                      .+.-.+
T Consensus        81 ~~~~vg   86 (419)
T cd05296          81 TQIRVG   86 (419)
T ss_pred             EEEeeC
Confidence            987443

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.86  E-value=0.0073  Score=51.32  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=50.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-~V~~~-~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      ||+|+|+ |..|..+.+.|..+.+ ++... .+. .          ....+.+++.+++|++|+|+|.....+.  .+..
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~-~----------~~~~~~~~~~~~~D~vFlalp~~~s~~~~~~~~~   71 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDR-R----------KDAAERAKLLNAADVAILCLPDDAAREAVSLVDN   71 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccc-c----------cCcCCHhHhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence            8999987 9999999999998754 43333 221 1          1122455666889999999999866664  4445


Q ss_pred             cCCcEEe
Q 025163           77 KGGHFLE   83 (257)
Q Consensus        77 ~g~~~~~   83 (257)
                      .|..++|
T Consensus        72 ~g~~VID   78 (310)
T TIGR01851        72 PNTCIID   78 (310)
T ss_pred             CCCEEEE
Confidence            6777777

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=96.86  E-value=0.0032  Score=53.71  Aligned_cols=73  Identities=19%  Similarity=0.179  Sum_probs=50.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      +||+|||+ |..|..+.+.|.++.+ ++.....+..+         .. .+.++..+++|++|+|+|.....+.  .+..
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~~~~~~~~~   72 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAREAVALIDN   72 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHHHHHHHHHh
Confidence            47999995 9999999999998864 44433322221         11 2334555789999999998877665  4445


Q ss_pred             cCCcEEe
Q 025163           77 KGGHFLE   83 (257)
Q Consensus        77 ~g~~~~~   83 (257)
                      .|..++|
T Consensus        73 ~g~~VID   79 (313)
T PRK11863         73 PATRVID   79 (313)
T ss_pred             CCCEEEE
Confidence            6777777

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.86  E-value=0.0042  Score=58.54  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=51.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~   51 (257)
                      .||.|||.|..|...|..|.+.|++|++|++.+.                     ..+.+.+.|+...        .+..
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  390 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS  390 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence            3799999999999999999999999999998763                     3444555665321        1345


Q ss_pred             HHhhcCceEEEccCCh
Q 025163           52 EVIKKCTITIGMLADP   67 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~   67 (257)
                      +.....|.||+++-..
T Consensus       391 ~l~~~~DaV~latGa~  406 (639)
T PRK12809        391 DLTSEYDAVFIGVGTY  406 (639)
T ss_pred             HHHhcCCEEEEeCCCC
Confidence            5667899999998654

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.84  E-value=0.0028  Score=42.66  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||.|||.|..|..+|..|.+.|.+|+++.+++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            689999999999999999999999999998765

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=96.83  E-value=0.0025  Score=54.67  Aligned_cols=65  Identities=15%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCC--CeEEEEcCCchhH--HHHHHCC----CcccCC---HHHHhhcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKC--DELVAHG----ATVGGS---PAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g--~~V~~~~r~~~~~--~~l~~~g----~~~~~~---~~~~~~~~dvii~~v~~   66 (257)
                      ||+|||+ |.+|..++..|+..+  .++.++|++....  .++....    +...++   ..++++++|+||++.-.
T Consensus        10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~   86 (321)
T PTZ00325         10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV   86 (321)
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence            7999999 999999999999655  5899999943222  2333221    121222   25788999999998643

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.82  E-value=0.01  Score=50.75  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=59.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchh-------------------H----HHHHHC--CCc-------ccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK-------------------C----DELVAH--GAT-------VGG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~-------------------~----~~l~~~--g~~-------~~~   48 (257)
                      ||.|||+|.+|..++++|+..|. +++++|.+.=.                   .    +.+++.  .+.       +..
T Consensus         1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~   80 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD   80 (312)
T ss_pred             CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence            68999999999999999999996 68888765321                   1    112221  111       111


Q ss_pred             --CHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           49 --SPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        49 --~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                        ...+..++.|+|+.|+-+......   .....++.++++...|
T Consensus        81 ~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G  125 (312)
T cd01489          81 PDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTG  125 (312)
T ss_pred             ccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCc
Confidence              134667899999999877655332   5566788888876544

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.82  E-value=0.0078  Score=50.53  Aligned_cols=116  Identities=19%  Similarity=0.311  Sum_probs=77.8

Q ss_pred             eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-| .+|.+++..|.++|..|++++...              .++.+.++++|+||.++..+.......-..|..
T Consensus       159 ~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~~~vk~Gav  224 (285)
T PRK14191        159 DVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKASMVKKGAV  224 (285)
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCHHHcCCCcE
Confidence            68999999 999999999999999999985432              235678899999999998887766555577888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    ..||-+ ++.+.+....+.+   .-|.+|.-...-+..|++.
T Consensus       225 VIDvGi~~~~----~gk----lvGDvd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~~  275 (285)
T PRK14191        225 VVDIGINRLN----DGR----LVGDVD-FENVAPKASFITP---VPGGVGPMTIVSLLENTLI  275 (285)
T ss_pred             EEEeeccccc----CCc----eecccc-HHHHhhhccEEec---CCCCChHHHHHHHHHHHHH
Confidence            8887764321    122    234332 2334443332221   1244666666777777663

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.82  E-value=0.0052  Score=53.37  Aligned_cols=83  Identities=18%  Similarity=0.296  Sum_probs=53.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC----------CCe-EEEEcCC----------chhHHHHHHC-CCc-------ccCCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN----------GFK-VTVWNRT----------LSKCDELVAH-GAT-------VGGSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~----------g~~-V~~~~r~----------~~~~~~l~~~-g~~-------~~~~~~   51 (257)
                      +||+|+|+|.||..+++.|.+.          +.+ |.++|++          .+++..+.+. +..       ...++.
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL   82 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence            4799999999999999999865          345 4445753          3344444332 211       124778


Q ss_pred             HHhh--cCceEEEccCChHH-----HHH--HHHhcCCcEEe
Q 025163           52 EVIK--KCTITIGMLADPAA-----ALS--AITSKGGHFLE   83 (257)
Q Consensus        52 ~~~~--~~dvii~~v~~~~~-----~~~--~~~~~g~~~~~   83 (257)
                      ++++  +.|+|+.|+|+...     .+.  ..-.+|.+++.
T Consensus        83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt  123 (341)
T PRK06270         83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT  123 (341)
T ss_pred             HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence            8773  68999999997432     111  44467888766

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.82  E-value=0.0035  Score=54.17  Aligned_cols=81  Identities=11%  Similarity=0.212  Sum_probs=50.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEcCCchhHH-HHHHCC--Cccc-CCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWNRTLSKCD-ELVAHG--ATVG-GSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~r~~~~~~-~l~~~g--~~~~-~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|+|+ |.+|..+.+.|.+++|.   +... ++.++.. .+.-.|  .... .+..+ ++++|++|+|+|.....+.
T Consensus         5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~~s~~~   82 (336)
T PRK05671          5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAAVSRSF   82 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHHHHHHH
Confidence            57999997 99999999999988774   3333 2222211 111112  1121 12333 4789999999997644443


Q ss_pred             --HHHhcCCcEEe
Q 025163           73 --AITSKGGHFLE   83 (257)
Q Consensus        73 --~~~~~g~~~~~   83 (257)
                        .+...|+.++|
T Consensus        83 v~~~~~~G~~VID   95 (336)
T PRK05671         83 AEKARAAGCSVID   95 (336)
T ss_pred             HHHHHHCCCeEEE
Confidence              44556777777

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.81  E-value=0.0041  Score=55.93  Aligned_cols=67  Identities=24%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcc--------cCCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATV--------GGSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~--------~~~~~   51 (257)
                      .+|+|||+|.-|.+.|..|.+.||+|++|++.+.                     .++.|.+.|+++        .-+.+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~  203 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE  203 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence            4799999999999999999999999999988654                     244555556432        34778


Q ss_pred             HHhhcCceEEEccCCh
Q 025163           52 EVIKKCTITIGMLADP   67 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~   67 (257)
                      ++.+..|.|++|+.+.
T Consensus       204 ~L~~e~Dav~l~~G~~  219 (457)
T COG0493         204 ELLKEYDAVFLATGAG  219 (457)
T ss_pred             HHHHhhCEEEEecccc
Confidence            8888889999998644

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.81  E-value=0.0039  Score=54.74  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=45.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEE--cCCchhHHHH----HH------CCCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDEL----VA------HGATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~--~r~~~~~~~l----~~------~g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|||+ |.+|..+|..|...+.       .+.++  |++.++++-.    .+      ..+.+..+..+.++++|+||
T Consensus        46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV  125 (387)
T TIGR01757        46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL  125 (387)
T ss_pred             EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence            8999999 9999999999998763       24444  8887765432    21      12333445567789999999


Q ss_pred             EccC
Q 025163           62 GMLA   65 (257)
Q Consensus        62 ~~v~   65 (257)
                      ++.-
T Consensus       126 itAG  129 (387)
T TIGR01757       126 LIGA  129 (387)
T ss_pred             ECCC
Confidence            9754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=96.80  E-value=0.0031  Score=53.90  Aligned_cols=65  Identities=17%  Similarity=0.270  Sum_probs=46.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchh--HHHHHHC--CCccc----C-CHHHHhhcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH--GATVG----G-SPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~--~~~l~~~--g~~~~----~-~~~~~~~~~dvii~~v~~   66 (257)
                      ||+|||+ |.+|..+|..|...++  ++.++|+++..  ..+|...  ...+.    . ++.+.++++|+||++...
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~   77 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV   77 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence            7999999 9999999999998875  79999997622  1223321  11121    1 346788999999998643

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.78  E-value=0.0025  Score=54.24  Aligned_cols=62  Identities=15%  Similarity=0.263  Sum_probs=45.6

Q ss_pred             EEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhcCceEEEccCC
Q 025163            5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         5 iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|.+|..+|..|+..+.  ++.++|++.++++-    +...      ..++..+..+.+++||+||++.-.
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~   74 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA   74 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence            69999999999999998875  79999998775432    3221      223344445678899999998643

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=96.76  E-value=0.0058  Score=53.24  Aligned_cols=83  Identities=18%  Similarity=0.315  Sum_probs=54.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH---------------CCCcc-cCCHHHHhhcCceEEE
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---------------HGATV-GGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~---------------~g~~~-~~~~~~~~~~~dvii~   62 (257)
                      +||+|+| .|.+|..+.+.|.++.+ +++.+.++++...+...               ....+ ..++++ +.++|+||.
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~DvVf~   82 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEA-VDDVDIVFS   82 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHH-hcCCCEEEE
Confidence            4899998 79999999999998754 78877555433221111               01111 124444 478999999


Q ss_pred             ccCChHHHHH--HHHhcCCcEEec
Q 025163           63 MLADPAAALS--AITSKGGHFLEA   84 (257)
Q Consensus        63 ~v~~~~~~~~--~~~~~g~~~~~~   84 (257)
                      |+|.....+.  .+...|+..++.
T Consensus        83 a~p~~~s~~~~~~~~~~G~~vIDl  106 (349)
T PRK08664         83 ALPSDVAGEVEEEFAKAGKPVFSN  106 (349)
T ss_pred             eCChhHHHHHHHHHHHCCCEEEEC
Confidence            9998866554  444567777763

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.74  E-value=0.014  Score=47.77  Aligned_cols=87  Identities=18%  Similarity=0.225  Sum_probs=58.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchh-------------------HHH----HHHCC--Cc-------cc-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK-------------------CDE----LVAHG--AT-------VG-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~-------------------~~~----l~~~g--~~-------~~-   47 (257)
                      ||.|||+|.+|..++++|+..|. +++++|.+.=.                   .+.    +.+.+  ++       +. 
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~   80 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP   80 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence            68999999999999999999996 58888765321                   111    11111  11       10 


Q ss_pred             -CC-HHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 -GS-PAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 -~~-~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                       .+ ..+..++.|+||.|+-+......   .....++.++++...|
T Consensus        81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G  126 (234)
T cd01484          81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEG  126 (234)
T ss_pred             hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccC
Confidence             11 23567899999999887765433   5556788888866543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.72  E-value=0.021  Score=55.45  Aligned_cols=119  Identities=15%  Similarity=0.201  Sum_probs=73.0

Q ss_pred             eEEEEcCChhHHHH-HHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhcCceEEEc--cCChHHHHHHHHh
Q 025163            2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGM--LADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~G~mG~~l-a~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~-~~~~~~~~~dvii~~--v~~~~~~~~~~~~   76 (257)
                      +|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.|.+.|+.... ...+.+.++|+||..  +|.....-.....
T Consensus         6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~   85 (809)
T PRK14573          6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS   85 (809)
T ss_pred             eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence            49999999999997 9999999999999997543 34567777876532 233556678988875  3333222224556


Q ss_pred             cCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcC
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGK  121 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~  121 (257)
                      .|+.+++-+-...... ...+...+.|  |...+.+.+..+|+..+.
T Consensus        86 ~gi~v~~~~el~~~~~-~~~~~IaITGTnGKTTTt~li~~iL~~~g~  131 (809)
T PRK14573         86 RGNRLVHRAELLAELM-QEQISILVSGSHGKTTVSSLITAIFQEAKK  131 (809)
T ss_pred             CCCcEEeHHHHHHHHH-cCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence            7777665332211110 1112223333  234555667778877664

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.71  E-value=0.054  Score=43.59  Aligned_cols=71  Identities=18%  Similarity=0.191  Sum_probs=53.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHHHCCC-cc---cCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHGA-TV---GGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~~~g~-~~---~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++.|||.|..|..=++.|++.|.+|+++.... +.+..+.+.+- ..   ..++.+. .++++||.|+++...-+.
T Consensus        13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~ln~~   88 (210)
T COG1648          13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEELNER   88 (210)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHHHHHH
Confidence            368999999999999999999999999997765 55666665532 22   2234444 359999999998766655

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.71  E-value=0.01  Score=44.56  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCcE
Q 025163            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGHF   81 (257)
Q Consensus         3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~~   81 (257)
                      |.|+|- ...|..++..|.+.|..|+.++++.              .++.+.++++|+|+.++..........-..|...
T Consensus        31 v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t--------------~~l~~~v~~ADIVvsAtg~~~~i~~~~ikpGa~V   96 (140)
T cd05212          31 VLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT--------------IQLQSKVHDADVVVVGSPKPEKVPTEWIKPGATV   96 (140)
T ss_pred             EEEECCCchHHHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCCCCccCHHHcCCCCEE
Confidence            444443 3445555555554455555444321              2678889999999999988755554455566666


Q ss_pred             Eecc
Q 025163           82 LEAP   85 (257)
Q Consensus        82 ~~~p   85 (257)
                      +|..
T Consensus        97 idvg  100 (140)
T cd05212          97 INCS  100 (140)
T ss_pred             EEcC
Confidence            6544

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK08223 hypothetical protein; Validated

Probab=96.70  E-value=0.016  Score=48.75  Aligned_cols=87  Identities=21%  Similarity=0.184  Sum_probs=57.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--C-------cc-c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--A-------TV-G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~-------~~-~   47 (257)
                      +|.|||+|.+|+.++.+|+..|. +++++|.+.=                   |++.    +++.+  +       .+ .
T Consensus        29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~~  108 (287)
T PRK08223         29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIGK  108 (287)
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            69999999999999999999995 6888876521                   1111    11111  1       11 2


Q ss_pred             CCHHHHhhcCceEEEccCCh--HHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADP--AAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~--~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+|+-|+...  .....   .....++.++.+.+.+
T Consensus       109 ~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g  154 (287)
T PRK08223        109 ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLG  154 (287)
T ss_pred             cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccC
Confidence            35567788999999888653  22111   5566788888866544

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.67  E-value=0.0051  Score=51.14  Aligned_cols=65  Identities=23%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..+...|.++|++|.+..|++++...+. .++.+       ..++..++++.|.++++.+.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~   73 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL   73 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence            78999965 99999999999999999999999999998888 55433       33566677899999998883

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.66  E-value=0.0087  Score=54.30  Aligned_cols=67  Identities=21%  Similarity=0.250  Sum_probs=50.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~~   52 (257)
                      ||.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+....        ...+
T Consensus       143 ~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~~  222 (467)
T TIGR01318       143 RVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLDD  222 (467)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHHH
Confidence            699999999999999999999999999988642                     23455666754321        2344


Q ss_pred             HhhcCceEEEccCChH
Q 025163           53 VIKKCTITIGMLADPA   68 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~   68 (257)
                      .....|.||+++-...
T Consensus       223 ~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       223 LLEDYDAVFLGVGTYR  238 (467)
T ss_pred             HHhcCCEEEEEeCCCC
Confidence            4457899999986543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PLN02477 glutamate dehydrogenase

Probab=96.65  E-value=0.12  Score=45.81  Aligned_cols=66  Identities=20%  Similarity=0.286  Sum_probs=44.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcCC----------chhHHHHHHCC--------CcccCCHHHH-hhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r~----------~~~~~~l~~~g--------~~~~~~~~~~-~~~~dvi   60 (257)
                      ++|+|.|.|++|..+|+.|.+.|..|+ +.|.+          .+.+.+..+.+        .... +.+++ ..+||++
T Consensus       207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl  285 (410)
T PLN02477        207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL  285 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence            479999999999999999999999987 56766          44443433321        1111 23333 3478988


Q ss_pred             EEccCCh
Q 025163           61 IGMLADP   67 (257)
Q Consensus        61 i~~v~~~   67 (257)
                      +-|--..
T Consensus       286 iP~Al~~  292 (410)
T PLN02477        286 IPAALGG  292 (410)
T ss_pred             eeccccc
Confidence            8875444

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=96.65  E-value=0.0033  Score=52.90  Aligned_cols=62  Identities=11%  Similarity=0.004  Sum_probs=45.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHh------hc-CceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVI------KK-CTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~------~~-~dvii~~v~~   66 (257)
                      +|.|+|+ |.+|..+++.|.+.|++|++..|++++...   .++..       .+++.+++      ++ +|.++++.+.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~   77 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAG---PNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP   77 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccC---CCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence            5788987 999999999999999999999999876432   12211       12344455      45 8999988774

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=96.65  E-value=0.0046  Score=53.64  Aligned_cols=83  Identities=14%  Similarity=0.193  Sum_probs=55.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCe---EEEEcCCchhHHHHHHCCCc--cc-CCHHHHhhcCceEEEccCChHHHHH--
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAHGAT--VG-GSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~---V~~~~r~~~~~~~l~~~g~~--~~-~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      ||+||| .|..|..+.+.|.+++|+   +.++.++.+.-+.+...|..  .. .+. +.++++|++|+|+|.....+.  
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~-~~~~~~D~v~~a~g~~~s~~~a~   79 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKI-ESFEGIDIALFSAGGSVSKEFAP   79 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCCh-HHhcCCCEEEECCCHHHHHHHHH
Confidence            689999 599999999999998886   33444544433333322321  11 122 345789999999998877665  


Q ss_pred             HHHhcCCcEEecc
Q 025163           73 AITSKGGHFLEAP   85 (257)
Q Consensus        73 ~~~~~g~~~~~~p   85 (257)
                      .+...|..++|.+
T Consensus        80 ~~~~~G~~VID~s   92 (339)
T TIGR01296        80 KAAKCGAIVIDNT   92 (339)
T ss_pred             HHHHCCCEEEECC
Confidence            4556677788644

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.64  E-value=0.0064  Score=52.63  Aligned_cols=82  Identities=17%  Similarity=0.206  Sum_probs=53.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH-CCCe---EEEEcCCch--hHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWNRTLS--KCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~-~g~~---V~~~~r~~~--~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+ |..|..+.+.|.+ ..++   +..+....+  +.-.+......+. .++.+ .++.|++|+|+|.....+.
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~~s~~~   84 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGEVSRQF   84 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChHHHHHH
Confidence            58999998 9999999999995 5566   555533222  2112221122221 24444 4789999999998866554


Q ss_pred             --HHHhcCCcEEe
Q 025163           73 --AITSKGGHFLE   83 (257)
Q Consensus        73 --~~~~~g~~~~~   83 (257)
                        .+...|..++|
T Consensus        85 ~~~~~~~G~~VID   97 (347)
T PRK06728         85 VNQAVSSGAIVID   97 (347)
T ss_pred             HHHHHHCCCEEEE
Confidence              44566777777

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.62  E-value=0.0056  Score=47.00  Aligned_cols=73  Identities=21%  Similarity=0.376  Sum_probs=50.9

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCC
Q 025163            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGG   79 (257)
Q Consensus         1 mkI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~   79 (257)
                      +++.|||-+ .+|.+++..|.++|..|++++.+.              .++.+.++.+|+||.++..+.......-..|.
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~~~ik~ga  102 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKADWIKPGA  102 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-GGGS-TTE
T ss_pred             CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccccccccCCc
Confidence            368999987 599999999999999999997753              36778889999999999887776554445577


Q ss_pred             cEEecccc
Q 025163           80 HFLEAPVS   87 (257)
Q Consensus        80 ~~~~~pv~   87 (257)
                      ..+|..+.
T Consensus       103 vVIDvG~~  110 (160)
T PF02882_consen  103 VVIDVGIN  110 (160)
T ss_dssp             EEEE--CE
T ss_pred             EEEecCCc
Confidence            77776654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=96.62  E-value=0.0078  Score=56.89  Aligned_cols=67  Identities=24%  Similarity=0.306  Sum_probs=49.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh---------------------HHHHHHCCCcccC--------CHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVGG--------SPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~---------------------~~~l~~~g~~~~~--------~~~   51 (257)
                      +||.|||.|..|...|..|++.|++|+++++++..                     ++.+.+.|+....        +.+
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~  273 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE  273 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence            47999999999999999999999999999986431                     3445555654321        233


Q ss_pred             HHhhcCceEEEccCCh
Q 025163           52 EVIKKCTITIGMLADP   67 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~   67 (257)
                      +.....|.||+++-..
T Consensus       274 ~~~~~~DaVilAtGa~  289 (652)
T PRK12814        274 ELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             HHHhhcCEEEEEcCCC
Confidence            4445689999988654

>PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1

Probab=96.60  E-value=0.00054  Score=52.04  Aligned_cols=103  Identities=16%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhhc----CCCchhhhcc--CCcccCCCCCC-------
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR-TLLDVLDLG----GIANPMFKGK--GPTMLQSNYAP-------  195 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~-~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~~-------  195 (257)
                      |....+++..|+..+++..++.|+..+++..|-+++ +++.+...+    ++.++..+++  +..+..++.+.       
T Consensus        21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~  100 (149)
T PF07479_consen   21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM  100 (149)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence            555667788999999999999999999999999888 665544432    2334334433  33444442211       


Q ss_pred             -CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          196 -AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       196 -~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                       ....-+....++.+.+++++.++++|+++++++++..
T Consensus       101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~~  138 (149)
T PF07479_consen  101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILYE  138 (149)
T ss_dssp             TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHHS
T ss_pred             hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHcC
Confidence             1123345667789999999999999999999999874

1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B ....

>PLN02427 UDP-apiose/xylose synthase

Probab=96.59  E-value=0.0054  Score=54.07  Aligned_cols=64  Identities=19%  Similarity=0.321  Sum_probs=47.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCC-------Ccc-------cCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g-------~~~-------~~~~~~~~~~~dvii~~v   64 (257)
                      |||.|.|. |.+|..+++.|.++ |++|++++|+.++.+.+...+       +..       ..++.++++++|+||=|.
T Consensus        15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA   94 (386)
T PLN02427         15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA   94 (386)
T ss_pred             cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence            78999985 99999999999998 599999999877766654321       111       112345667899988765

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.57  E-value=0.0079  Score=58.58  Aligned_cols=66  Identities=26%  Similarity=0.279  Sum_probs=52.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~~   52 (257)
                      +|+|||.|.-|.+-|..|-+.||.|++|.|+..                     +++.+.++|+...        -+.++
T Consensus      1787 ~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~vs~d~ 1866 (2142)
T KOG0399|consen 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKHVSLDE 1866 (2142)
T ss_pred             EEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeeccccccccHHH
Confidence            799999999999999999999999999998753                     2333455676543        36778


Q ss_pred             HhhcCceEEEccCCh
Q 025163           53 VIKKCTITIGMLADP   67 (257)
Q Consensus        53 ~~~~~dvii~~v~~~   67 (257)
                      +-+.-|.|++|+-+.
T Consensus      1867 l~~~~daiv~a~gst 1881 (2142)
T KOG0399|consen 1867 LKKENDAIVLATGST 1881 (2142)
T ss_pred             HhhccCeEEEEeCCC
Confidence            888899999997543

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=96.57  E-value=0.0058  Score=52.77  Aligned_cols=82  Identities=20%  Similarity=0.255  Sum_probs=52.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC---eEEEEcCCchhHHH--HHHCCCcccCCHHHH-hhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDE--LVAHGATVGGSPAEV-IKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+ |..|..+.+.|.++.|   ++..+....+.-+.  +......+. ++++. .+++|++|+|+|.....+. 
T Consensus         5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~~s~~~~   83 (336)
T PRK08040          5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGREASAAYA   83 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHHHHHHHH
Confidence            58999998 9999999999999654   55555332221111  211112222 34343 2689999999998866554 


Q ss_pred             -HHHhcCCcEEe
Q 025163           73 -AITSKGGHFLE   83 (257)
Q Consensus        73 -~~~~~g~~~~~   83 (257)
                       .+...|+.++|
T Consensus        84 ~~~~~~g~~VID   95 (336)
T PRK08040         84 EEATNAGCLVID   95 (336)
T ss_pred             HHHHHCCCEEEE
Confidence             44456777777

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.56  E-value=0.026  Score=47.30  Aligned_cols=116  Identities=19%  Similarity=0.282  Sum_probs=77.5

Q ss_pred             eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-+ .+|.+++..|.++|..|+++....              .++.+.++.+|+||.++..+.......-..|..
T Consensus       159 ~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~~~~vk~gav  224 (281)
T PRK14183        159 DVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLITEDMVKEGAI  224 (281)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccCHHHcCCCcE
Confidence            68999998 899999999999999999886421              256778899999999999887766655567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    ..||-+ ++.+.+..+.+..   .-|.+|.-...-+..|++.
T Consensus       225 vIDvGin~~~----~gk----l~GDVd-~~~~~~~a~~iTP---VPGGVGpvT~a~L~~N~~~  275 (281)
T PRK14183        225 VIDIGINRTE----DGR----LVGDVD-FENVAKKCSYITP---VPGGVGPMTIAMLLSNTLK  275 (281)
T ss_pred             EEEeeccccC----CCC----eECCcc-HHHHHhhceEecC---CCCCChHHHHHHHHHHHHH
Confidence            8887765321    122    223322 2334333332221   1244666666667777653

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.55  E-value=0.0081  Score=55.28  Aligned_cols=66  Identities=21%  Similarity=0.234  Sum_probs=47.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCccc--CCHHHH-hhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEV-IKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~--~~~~~~-~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+. +....  .+..+. ...+|+|+-|+|..
T Consensus       381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vG  450 (529)
T PLN02520        381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVG  450 (529)
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCC
Confidence            47799999999999999999999999999999998888653 21111  122221 13467777676644

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=96.55  E-value=0.0061  Score=52.91  Aligned_cols=63  Identities=22%  Similarity=0.386  Sum_probs=45.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-CCcc-----cCC---HHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----GGS---PAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-----~~~---~~~~~~~~dvii~~   63 (257)
                      |||.|.|+ |.+|+.++..|.++ |++|++++|+.++...+... ++..     ..+   ..++++++|+||=|
T Consensus         2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~   75 (347)
T PRK11908          2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL   75 (347)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence            68999997 99999999999986 69999999977655544322 2221     112   23456789999854

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=96.53  E-value=0.0062  Score=52.44  Aligned_cols=64  Identities=20%  Similarity=0.233  Sum_probs=44.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCchh--HH----HHHHC------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~~--~~----~l~~~------g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|||+ |.+|..++..|...+.       ++.++|++++.  ++    ++...      +.....+..+.++++|+||
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            6999999 9999999999997553       59999996442  21    11111      1222235467788999999


Q ss_pred             EccC
Q 025163           62 GMLA   65 (257)
Q Consensus        62 ~~v~   65 (257)
                      ++.-
T Consensus        81 itAG   84 (324)
T TIGR01758        81 LVGA   84 (324)
T ss_pred             EcCC
Confidence            9764

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.51  E-value=0.025  Score=49.34  Aligned_cols=71  Identities=23%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH-CCCcccCCHH---------HHh--hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSPA---------EVI--KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~-~g~~~~~~~~---------~~~--~~~dvii~~v~~~~   68 (257)
                      ++.|+|+|.+|...+..+...|. +|++.|+++++++..++ .|.....+..         +..  ..+|++|-|+....
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~  250 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP  250 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence            58899999999999888888885 68888999999998887 4544333221         111  25999999999776


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       251 ~~~~  254 (350)
T COG1063         251 ALDQ  254 (350)
T ss_pred             HHHH
Confidence            5554

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=96.50  E-value=0.033  Score=47.68  Aligned_cols=162  Identities=21%  Similarity=0.268  Sum_probs=88.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CCCeEEEE-cCCchhHHHHHHC-----------------------C-CcccCCHHHHh-
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NGFKVTVW-NRTLSKCDELVAH-----------------------G-ATVGGSPAEVI-   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g~~V~~~-~r~~~~~~~l~~~-----------------------g-~~~~~~~~~~~-   54 (257)
                      |||+||+|.||+.+.....+ .|.+|... ||+.+...+..+.                       | +.++.|..+++ 
T Consensus        19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i~~   98 (438)
T COG4091          19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELIIA   98 (438)
T ss_pred             EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhhhc
Confidence            79999999999999988875 48886554 8888776554431                       1 22333444443 


Q ss_pred             -hcCceEEEccCChHHHHH---HHHhcCCcEEe----ccccCCcc----ccccCcEEEEe-cCChhhHHHHHHHHHHhcC
Q 025163           55 -KKCTITIGMLADPAAALS---AITSKGGHFLE----APVSGSKQ----PAETGQLVILS-AGEKALYDEAISALNVIGK  121 (257)
Q Consensus        55 -~~~dvii~~v~~~~~~~~---~~~~~g~~~~~----~pv~~~~~----~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~  121 (257)
                       ...|+||-++--+..-..   ..-.++-+.+-    +-++=+|-    ....|-..... |..+..+-++-++.+++|.
T Consensus        99 ~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~GDeP~~~mEL~efa~a~G~  178 (438)
T COG4091          99 NDLIDVIIDATGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAGDEPSSCMELYEFASALGF  178 (438)
T ss_pred             CCcceEEEEcCCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCCCCcHHHHHHHHHHHhcCC
Confidence             235777777654433222   11123333322    12221111    11122211222 2346667788889999998


Q ss_pred             CeEEeCCCC--------------hHHHHHHHHHHHHHHH----HHHHHHHHHHHHHcCCCH
Q 025163          122 KAFFLGEVG--------------NGAKMKLVVNMIMGCM----MNTFSEGLVLAEKSGLDP  164 (257)
Q Consensus       122 ~~~~~g~~g--------------~a~~~kl~~n~~~~~~----~~~~~E~~~l~~~~g~~~  164 (257)
                      .++..|. |              ..+.-+--.|.-+...    .-.+.|+..++.+.|+.+
T Consensus       179 evv~aGK-GkNnpl~~~a~Pdt~~eeA~r~~~n~~Ml~sF~DGsKtmvEMaavANaTGl~p  238 (438)
T COG4091         179 EVVSAGK-GKNNPLNIDANPDTYEEEAKRRNMNPRMLVSFQDGSKTMVEMAAVANATGLVP  238 (438)
T ss_pred             eEEeccC-CcCCCCccCCCCchHHHHHhhcCCChHHhhhhhcccHHHHHHHHHhcccCCCC
Confidence            8776664 2              1122222222222211    346778888888888654

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=96.49  E-value=0.004  Score=55.37  Aligned_cols=34  Identities=35%  Similarity=0.513  Sum_probs=32.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+|.|||.|.+|...|..|+++|++|++++++..
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence            8999999999999999999999999999999753

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=96.48  E-value=0.004  Score=55.32  Aligned_cols=32  Identities=31%  Similarity=0.655  Sum_probs=30.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|.|||.|.+|.+.|..|++.|++|++++++.
T Consensus         3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~   34 (410)
T PRK12409          3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR   34 (410)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            79999999999999999999999999999975

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.48  E-value=0.18  Score=41.00  Aligned_cols=71  Identities=15%  Similarity=0.144  Sum_probs=51.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHHHCC-Ccc---cCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATV---GGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~~~g-~~~---~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +++-|||.|.++.-=+..|.+.|.+|+++.... +.++.+.+.| ++.   ..++.+ ++++++||.|+.+...-+.
T Consensus        26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~d-l~g~~LViaATdD~~vN~~  101 (223)
T PRK05562         26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEF-IKDKHLIVIATDDEKLNNK  101 (223)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHH-hCCCcEEEECCCCHHHHHH
Confidence            368999999999999999999999999997643 2445555543 222   223334 4789999999987766554

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.47  E-value=0.042  Score=50.13  Aligned_cols=126  Identities=20%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~   51 (257)
                      ++|.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+....        +..
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~  223 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGVDISAD  223 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCCccCHH
Confidence            3799999999999999999999999999986532                     12334445654321        223


Q ss_pred             HHhhcCceEEEccCChHHHHH---------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHH
Q 025163           52 EVIKKCTITIGMLADPAAALS---------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISAL  116 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~~~~~~---------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l  116 (257)
                      +.....|.||+++-.......               .+...+....+.....-......+.-++++|+-.-..+.++..+
T Consensus       224 ~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~a~~a~  303 (485)
T TIGR01317       224 ELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSL  303 (485)
T ss_pred             HHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHHHHHHH
Confidence            344568999999864411000               11111111111110000011123444677777666667777777


Q ss_pred             HHhcCCeEEe
Q 025163          117 NVIGKKAFFL  126 (257)
Q Consensus       117 ~~~~~~~~~~  126 (257)
                      +..+..+..+
T Consensus       304 ~~ga~~V~vv  313 (485)
T TIGR01317       304 RHGAASVHQF  313 (485)
T ss_pred             HcCCCEEEEE
Confidence            7665555443

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PRK06753 hypothetical protein; Provisional

Probab=96.47  E-value=0.0041  Score=54.49  Aligned_cols=34  Identities=29%  Similarity=0.514  Sum_probs=32.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+|.|||.|..|.++|..|.++|++|++++++++
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            8999999999999999999999999999998765

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.45  E-value=0.15  Score=45.68  Aligned_cols=71  Identities=18%  Similarity=0.107  Sum_probs=49.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEE-c----------CCchhHHHHHHC--C----------CcccCCHHHHh-hc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH--G----------ATVGGSPAEVI-KK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~-~----------r~~~~~~~l~~~--g----------~~~~~~~~~~~-~~   56 (257)
                      ++|+|.|.|++|..+|+.|.+.|..|+.+ |          .+.+.+.+..+.  |          ... .+.+++. .+
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~-i~~~~i~~~d  311 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEY-LEGGSPWSVP  311 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCee-cCCccccccC
Confidence            47999999999999999999999998877 7          566655544432  1          111 1233333 37


Q ss_pred             CceEEEccCChHHHHH
Q 025163           57 CTITIGMLADPAAALS   72 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~   72 (257)
                      |||++-|.........
T Consensus       312 ~DVliPaAl~n~It~~  327 (445)
T PRK09414        312 CDIALPCATQNELDEE  327 (445)
T ss_pred             CcEEEecCCcCcCCHH
Confidence            9999999876655444

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.44  E-value=0.016  Score=51.25  Aligned_cols=87  Identities=15%  Similarity=0.213  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHCC--Ccc-------c-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAHG--ATV-------G-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~g--~~~-------~-   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.=                   |++.    +.+.+  +++       . 
T Consensus        44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~  123 (392)
T PRK07878         44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDP  123 (392)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCCh
Confidence            79999999999999999999996 6888876531                   1111    12111  111       1 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||.|+-+......   .....++.|+.+.+.+
T Consensus       124 ~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g  167 (392)
T PRK07878        124 SNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYR  167 (392)
T ss_pred             hHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence            1334677899999999876644322   4455677777755443

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=96.44  E-value=0.005  Score=50.95  Aligned_cols=57  Identities=23%  Similarity=0.412  Sum_probs=44.6

Q ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEc
Q 025163            7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGM   63 (257)
Q Consensus         7 G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~   63 (257)
                      |.|-+|.+|...|.+.||+|++..|++.+.+......+......++... ++|+||=.
T Consensus         6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINL   63 (297)
T COG1090           6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINL   63 (297)
T ss_pred             cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEEC
Confidence            7799999999999999999999999998877665544444444555555 69988854

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.42  E-value=0.0094  Score=58.53  Aligned_cols=66  Identities=15%  Similarity=0.120  Sum_probs=50.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~--------~~~~   51 (257)
                      .||+|||.|.-|.+.|..|++.||+|++|++.+.                     .++.+.+.|+...        -+.+
T Consensus       307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~  386 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE  386 (944)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence            3799999999999999999999999999988642                     2344555666422        2455


Q ss_pred             HHhh-cCceEEEccCC
Q 025163           52 EVIK-KCTITIGMLAD   66 (257)
Q Consensus        52 ~~~~-~~dvii~~v~~   66 (257)
                      ++.+ +.|.||+++-.
T Consensus       387 ~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        387 DLKAAGFWKIFVGTGA  402 (944)
T ss_pred             HhccccCCEEEEeCCC
Confidence            6654 68999999865

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.41  E-value=0.054  Score=45.81  Aligned_cols=120  Identities=17%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|+++...              +.++.+.+++||+||.++..+.......-..|..
T Consensus       160 ~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gav  225 (297)
T PRK14186        160 KAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIGAEMVKPGAV  225 (297)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence            6889987 568999999999999999998542              1267788899999999999887666556667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+..-......+.    ..||-+ ++.+.+.-..+.+   .-|.+|.-...-+..|++.
T Consensus       226 VIDvGin~~~~~~~~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~Nl~~  280 (297)
T PRK14186        226 VVDVGIHRLPSSDGKTR----LCGDVD-FEEVEPVAAAITP---VPGGVGPMTVTMLLVNTVL  280 (297)
T ss_pred             EEEeccccccccccCCc----eeCCcc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHHH
Confidence            88977664221111232    234433 2334333332221   1244677677777777663

>PRK06182 short chain dehydrogenase; Validated

Probab=96.39  E-value=0.014  Score=48.75  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      +|.|.|+ |.+|..+++.|++.|++|++.+|++++++.+...+
T Consensus         5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~~   47 (273)
T PRK06182          5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASLG   47 (273)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhCC
Confidence            4667775 99999999999999999999999988877665443

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.39  E-value=0.011  Score=54.47  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      .|.|.|+ |.+|..+++.|++.|++|++++|+.++++.+.
T Consensus        82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~  121 (576)
T PLN03209         82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLV  121 (576)
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            3667775 99999999999999999999999998877654

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.37  E-value=0.0065  Score=39.57  Aligned_cols=30  Identities=33%  Similarity=0.627  Sum_probs=27.2

Q ss_pred             EEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         5 iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||+|.-|...|..|.++|++|+++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~   30 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDR   30 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcc
Confidence            799999999999999999999999998754

...

>PRK07411 hypothetical protein; Validated

Probab=96.36  E-value=0.019  Score=50.86  Aligned_cols=87  Identities=9%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHH----HHHHC--CCc-------cc-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCD----ELVAH--GAT-------VG-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~----~l~~~--g~~-------~~-   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.=                   |++    .+++.  .++       .. 
T Consensus        40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~  119 (390)
T PRK07411         40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSS  119 (390)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCH
Confidence            79999999999999999999996 6888876521                   111    12221  111       11 


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||.|+-+......   .....+..++.+.+++
T Consensus       120 ~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g  163 (390)
T PRK07411        120 ENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFR  163 (390)
T ss_pred             HhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEcc
Confidence            1334667899999999887755332   3445566666655444

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.35  E-value=0.034  Score=50.37  Aligned_cols=105  Identities=20%  Similarity=0.261  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCCc-
Q 025163          132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPAF-  197 (257)
Q Consensus       132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~~-  197 (257)
                      ++.+|.++|.+....+.+++|.+.+.++      ++++..++.++++.++. .+++++...      +.+.+--+++.| 
T Consensus       312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l~~l~~~~~~~  391 (467)
T TIGR00873       312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDLANLLLAPYFK  391 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCChhhhcCCHHHH
Confidence            7899999999999999999999999988      78999999999998864 344443211      111111111222 


Q ss_pred             -ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          198 -PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       198 -~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                       .+......++.++..+-+.|+|+|.+.+...-+....+.
T Consensus       392 ~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s~  431 (467)
T TIGR00873       392 DALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRTA  431 (467)
T ss_pred             HHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcC
Confidence             123344566889999999999999999998888877663

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.35  E-value=0.015  Score=48.95  Aligned_cols=72  Identities=13%  Similarity=0.153  Sum_probs=58.2

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-+. +|.+++..|..+|..|++++..              +.++.+.++++|+||.++.-+.......-..|..
T Consensus       166 ~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~~~~vk~gav  231 (287)
T PRK14176        166 NAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIKADMVKEGAV  231 (287)
T ss_pred             EEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccCHHHcCCCcE
Confidence            689999998 9999999999999999999853              1257788899999999887766555445566888


Q ss_pred             EEecccc
Q 025163           81 FLEAPVS   87 (257)
Q Consensus        81 ~~~~pv~   87 (257)
                      ++|..+.
T Consensus       232 VIDvGin  238 (287)
T PRK14176        232 IFDVGIT  238 (287)
T ss_pred             EEEeccc
Confidence            8887764

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=96.34  E-value=0.031  Score=50.40  Aligned_cols=104  Identities=17%  Similarity=0.270  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCCc-
Q 025163          132 GAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPAF-  197 (257)
Q Consensus       132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~~-  197 (257)
                      ++.+|.++|.+.+..+.+++|.+.+.++      ++++...+.++++.|+. .|+++....      +.+.+--+++.| 
T Consensus       304 ~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~~~  383 (459)
T PRK09287        304 AEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRGGCIIRAQFLQKITDAYEANPDLANLLLDPYFK  383 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCCEEeHHHHHHHHHHHHhCCCchhhcCCHHHH
Confidence            7899999999999999999999999987      35889999999998864 444444311      111111111222 


Q ss_pred             -ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          198 -PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       198 -~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                       .+......++.++..+-+.|+|+|.+.....-+.....
T Consensus       384 ~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~  422 (459)
T PRK09287        384 DILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRT  422 (459)
T ss_pred             HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence             12333455688999999999999999998866665543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=96.31  E-value=0.16  Score=42.65  Aligned_cols=71  Identities=20%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcccCCH---HHHh------hcCceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSP---AEVI------KKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~---~~~~------~~~dvii~~v~~~~~~~   71 (257)
                      ++.|+|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+...-+.   .+.+      ...|++|-|+..+....
T Consensus       123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~~  202 (280)
T TIGR03366       123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAVR  202 (280)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHHH
Confidence            578999999999999998888986 8888999999888888886433221   1211      25799999997665444


Q ss_pred             H
Q 025163           72 S   72 (257)
Q Consensus        72 ~   72 (257)
                      .
T Consensus       203 ~  203 (280)
T TIGR03366       203 A  203 (280)
T ss_pred             H
Confidence            3

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK08017 oxidoreductase; Provisional

Probab=96.31  E-value=0.011  Score=48.76  Aligned_cols=42  Identities=21%  Similarity=0.311  Sum_probs=36.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      +|.|.|+ |.+|..+++.|.++|++|++.+|++++.+.+.+.+
T Consensus         4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   46 (256)
T PRK08017          4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLG   46 (256)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCC
Confidence            5888988 99999999999999999999999988877665443

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.30  E-value=0.096  Score=45.56  Aligned_cols=71  Identities=31%  Similarity=0.346  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcC---CchhHHHHHHCCCcccCC----HHH--HhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATVGGS----PAE--VIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r---~~~~~~~l~~~g~~~~~~----~~~--~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++.|+|+|.+|...++.+...|.+|++++|   ++++.+.+.+.|+.....    ..+  .....|+||-|+..+.....
T Consensus       175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  254 (355)
T cd08230         175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAFE  254 (355)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHHH
Confidence            588999999999999999889999999998   678888777778654321    111  12357999999987654443

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.30  E-value=0.1  Score=42.74  Aligned_cols=127  Identities=16%  Similarity=0.199  Sum_probs=72.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHH----HCC--Ccc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELV----AHG--ATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~----~~g--~~~--------~   47 (257)
                      ||.|+|+|.+|+.++.+|++.|. +++++|.+.=                   |++.++    +.+  +++        .
T Consensus        13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~   92 (231)
T cd00755          13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP   92 (231)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence            79999999999999999999996 7888876531                   122111    111  111        1


Q ss_pred             CCHHHHh-hcCceEEEccCChHHHHH---HHHhcCCcEEeccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcC-
Q 025163           48 GSPAEVI-KKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGK-  121 (257)
Q Consensus        48 ~~~~~~~-~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~-  121 (257)
                      .+..+.. .+.|+||.|+-+......   .....++.++..--.++......-+..-+. .-.......++..|+.-+. 
T Consensus        93 ~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~~R~~Lrk~~~~  172 (231)
T cd00755          93 DNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGGKLDPTRIRVADISKTSGDPLARKVRKRLRKRGIF  172 (231)
T ss_pred             hHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHHHHHHHHHcCCC
Confidence            2334444 368999999877654333   555678888876444332211110110010 1122344677888876443 


Q ss_pred             ---CeEEeCC
Q 025163          122 ---KAFFLGE  128 (257)
Q Consensus       122 ---~~~~~g~  128 (257)
                         +++|..+
T Consensus       173 ~~~~~v~S~E  182 (231)
T cd00755         173 FGVPVVYSTE  182 (231)
T ss_pred             CCeEEEeCCC
Confidence               3555544

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.30  E-value=0.013  Score=49.08  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=36.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      ++.|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+.+
T Consensus         6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~   48 (277)
T PRK05993          6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEG   48 (277)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Confidence            4667777 99999999999999999999999998888776544

>PRK08374 homoserine dehydrogenase; Provisional

Probab=96.29  E-value=0.016  Score=50.17  Aligned_cols=83  Identities=22%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--------CCC--eE-EEEcCCchh-------HHHH---HHC-CC--cc-------cCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLR--------NGF--KV-TVWNRTLSK-------CDEL---VAH-GA--TV-------GGS   49 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~--------~g~--~V-~~~~r~~~~-------~~~l---~~~-g~--~~-------~~~   49 (257)
                      ++|+|+|+|++|..+++.|.+        .|.  +| .+.|++...       +.++   .+. +.  ..       ..+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            479999999999999999887        463  33 333544221       1222   221 10  01       126


Q ss_pred             HHHHh--hcCceEEEccCChHHHHH--HHHhcCCcEEe
Q 025163           50 PAEVI--KKCTITIGMLADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        50 ~~~~~--~~~dvii~~v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      +.+.+  .++|+||-+++.....+.  .+...|.+++.
T Consensus        83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt  120 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT  120 (336)
T ss_pred             HHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence            66776  478999999876544333  44456777665

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.27  E-value=0.01  Score=52.77  Aligned_cols=59  Identities=17%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh--hcCceEEEc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~--~~~dvii~~   63 (257)
                      |||.|+|.|.-|.++|+.|. .|++|+++|.++.... +.+.|+... . .+..  +++|+||..
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~s   61 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPS   61 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEEC
Confidence            89999999999999999999 9999999996543221 223365542 2 2222  357877765

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.26  E-value=0.012  Score=54.62  Aligned_cols=67  Identities=16%  Similarity=0.231  Sum_probs=49.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc---------------------hhHHHHHHCCCcccC--------CHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVGG--------SPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~---------------------~~~~~l~~~g~~~~~--------~~~~   52 (257)
                      +|.|||+|..|...|..|.+.|++|+++++.+                     .+++.+.+.|+....        +..+
T Consensus       139 ~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~  218 (564)
T PRK12771        139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLEQ  218 (564)
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence            79999999999999999999999999998642                     234555666754221        1233


Q ss_pred             HhhcCceEEEccCChH
Q 025163           53 VIKKCTITIGMLADPA   68 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~   68 (257)
                      .....|+||+++-...
T Consensus       219 ~~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        219 LEGEFDAVFVAIGAQL  234 (564)
T ss_pred             HHhhCCEEEEeeCCCC
Confidence            3446899999987553

>PRK06392 homoserine dehydrogenase; Provisional

Probab=96.26  E-value=0.017  Score=49.68  Aligned_cols=84  Identities=15%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC------C--Ce-EEEEcCCchh-------HHHH---HHCC-C--cccC--CHHHHh-h
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN------G--FK-VTVWNRTLSK-------CDEL---VAHG-A--TVGG--SPAEVI-K   55 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~------g--~~-V~~~~r~~~~-------~~~l---~~~g-~--~~~~--~~~~~~-~   55 (257)
                      |||++||+|++|..+++.|.++      |  .+ |.+.|++...       ++++   .+.| .  ....  ++.++. .
T Consensus         1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence            8999999999999999999873      3  34 3344665321       1222   2212 1  1112  455553 4


Q ss_pred             cCceEEEccCChHH----HH--HHHHhcCCcEEec
Q 025163           56 KCTITIGMLADPAA----AL--SAITSKGGHFLEA   84 (257)
Q Consensus        56 ~~dvii~~v~~~~~----~~--~~~~~~g~~~~~~   84 (257)
                      ++|++|-|+|+...    ..  ..+-..|.+++.+
T Consensus        81 ~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa  115 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA  115 (326)
T ss_pred             CCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence            68999999985321    11  1344577777653

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.23  E-value=0.015  Score=41.44  Aligned_cols=61  Identities=13%  Similarity=0.098  Sum_probs=45.1

Q ss_pred             hhHHHHHHHHHHCCCeEEEEcCCchhHHHHH---HCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus        10 ~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      +-+..++..|.+.|.+|.+||..-.......   ..+++..+++.++++++|+||++++.+.-.
T Consensus        17 Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~   80 (106)
T PF03720_consen   17 SPALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFR   80 (106)
T ss_dssp             -HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGG
T ss_pred             CHHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHh
Confidence            3467789999999999999998755544433   257888889999999999999999877543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=96.21  E-value=0.02  Score=48.92  Aligned_cols=65  Identities=22%  Similarity=0.241  Sum_probs=45.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHH---HHHHC-----CCc-----c--cCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD---ELVAH-----GAT-----V--GGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~---~l~~~-----g~~-----~--~~~~~~~~~~~dvii~~v   64 (257)
                      |+|.|.| +|.+|..++..|.++|++|++.+|+++...   .+...     .+.     .  ..+..++++++|+||-+.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   84 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA   84 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence            5788998 599999999999999999999988765432   22211     111     1  123556677899988875


Q ss_pred             C
Q 025163           65 A   65 (257)
Q Consensus        65 ~   65 (257)
                      .
T Consensus        85 ~   85 (322)
T PLN02662         85 S   85 (322)
T ss_pred             C
Confidence            3

>PRK05884 short chain dehydrogenase; Provisional

Probab=96.20  E-value=0.012  Score=47.76  Aligned_cols=41  Identities=22%  Similarity=0.244  Sum_probs=36.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ||+.|.|+ |.+|..+++.|++.|++|++.+|++++++.+.+
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~   42 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK   42 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            78999976 999999999999999999999999888776654

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.19  E-value=0.092  Score=44.13  Aligned_cols=117  Identities=17%  Similarity=0.243  Sum_probs=78.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|+++...              +.++.+.++++|+||.++..+.......-..|..
T Consensus       159 ~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~~~~vk~Gav  224 (284)
T PRK14170        159 RAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVKKDYIKPGAI  224 (284)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence            6889987 568999999999999999998642              1357788899999999999887766555567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+....    .|.    ..||-+ ++.+.+.-+.+.+   .-|.+|.-...-+..|++.+
T Consensus       225 VIDvGin~~~----~gk----l~GDvd-fe~~~~~a~~iTP---VPGGVGpvT~a~L~~N~~~a  276 (284)
T PRK14170        225 VIDVGMDRDE----NNK----LCGDVD-FDDVVEEAGFITP---VPGGVGPMTITMLLANTLKA  276 (284)
T ss_pred             EEEccCcccC----CCC----eecccc-hHHHHhhccEecC---CCCChHHHHHHHHHHHHHHH
Confidence            8997766421    122    234332 3334443333322   12446666667777776643

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=96.16  E-value=0.023  Score=51.22  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=52.9

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|+|||+    |.+|..+.++|.+.||  +|+.++.+.+.+     .|.+...+++|+-...|++++++|.....+.
T Consensus         9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp~~~~~~~   80 (447)
T TIGR02717         9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVPAKYVPQV   80 (447)
T ss_pred             EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecCHHHHHHH
Confidence            6999999    8899999999999998  566666543321     3788888999987788999999997766554

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.15  E-value=0.022  Score=51.77  Aligned_cols=67  Identities=24%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~---------------------~~~~l~~~g~~~~~--------~~~   51 (257)
                      ++|.|||.|..|...|..|.+.|++|+++++.+.                     ..+.+.+.|+....        +..
T Consensus       144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~  223 (471)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAE  223 (471)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHH
Confidence            4799999999999999999999999999987642                     12334445543211        234


Q ss_pred             HHhhcCceEEEccCCh
Q 025163           52 EVIKKCTITIGMLADP   67 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~   67 (257)
                      +.....|.||+++-..
T Consensus       224 ~~~~~~d~vvlAtGa~  239 (471)
T PRK12810        224 ELLAEYDAVFLGTGAY  239 (471)
T ss_pred             HHHhhCCEEEEecCCC
Confidence            4445789999987543

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=96.14  E-value=0.043  Score=46.32  Aligned_cols=86  Identities=23%  Similarity=0.255  Sum_probs=55.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhH-----------------------HHHHHCC--Cc--ccC--CHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKC-----------------------DELVAHG--AT--VGG--SPA   51 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~-----------------------~~l~~~g--~~--~~~--~~~   51 (257)
                      +|.|+|+|.+|..++++|+..|. .|+++|.+.=..                       +++++.+  ++  ..+  -..
T Consensus        21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~~~~  100 (286)
T cd01491          21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGPLTT  100 (286)
T ss_pred             cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence            79999999999999999999996 699998653211                       1222221  11  111  124


Q ss_pred             HHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           52 EVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      +.+++.|+||.|..+......   .....++.++.+...
T Consensus       101 ~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~  139 (286)
T cd01491         101 DELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTR  139 (286)
T ss_pred             HHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEecc
Confidence            667899999888764433222   555567777765543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.14  E-value=0.0095  Score=50.13  Aligned_cols=63  Identities=24%  Similarity=0.370  Sum_probs=52.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc------ccCCHHHHhhcCceEEEcc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT------VGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~------~~~~~~~~~~~~dvii~~v   64 (257)
                      ||.|||.|.+|+.-|+...--|.+|++.|+|.+++..+-.. +.+      ...++++.+..+|++|-+|
T Consensus       170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaV  239 (371)
T COG0686         170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAV  239 (371)
T ss_pred             cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEE
Confidence            78999999999999999998899999999999998887654 322      2335678889999999876

>PRK07538 hypothetical protein; Provisional

Probab=96.13  E-value=0.0074  Score=53.74  Aligned_cols=34  Identities=29%  Similarity=0.470  Sum_probs=32.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+|.|||+|..|.++|..|.++|++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence            8999999999999999999999999999998764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=96.13  E-value=0.014  Score=48.05  Aligned_cols=41  Identities=27%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+|-|+|+ |.+|..++..|.+.|++|++.+|++++++.+.+
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~   42 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD   42 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78999985 999999999999999999999999887776643

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=96.09  E-value=0.0074  Score=53.01  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=43.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-----cc--CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VG--GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~~dvii~~v   64 (257)
                      |||.|.|. |.+|..+++.|.++||+|++.+|.......-...+..     +.  .+...+++++|+||-+.
T Consensus        22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   93 (370)
T PLN02695         22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA   93 (370)
T ss_pred             CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence            78999987 9999999999999999999999864321100000111     11  12233456789998886

>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.07  E-value=0.071  Score=42.17  Aligned_cols=82  Identities=13%  Similarity=0.248  Sum_probs=58.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--e---EEEEcCCchhHHHHHHCCCcccCCHHH-Hh-----hcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--K---VTVWNRTLSKCDELVAHGATVGGSPAE-VI-----KKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~---V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~-----~~~dvii~~v~~~~~~   70 (257)
                      |++|||.|++|+-+--.+.++|.  +   ....|...+-+.+..+.|+..+..--+ ++     .+.|+||-+++.....
T Consensus         6 kvaiigsgni~tdlm~k~lr~g~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa~~h~   85 (310)
T COG4569           6 KVAIIGSGNIGTDLMIKILRHGQHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSAGAHV   85 (310)
T ss_pred             eEEEEccCcccHHHHHHHHhcCCcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEeccccchhh
Confidence            79999999999999999999874  2   223455555677777777654432222 22     3556999999988777


Q ss_pred             HH--HHHhcCCcEEe
Q 025163           71 LS--AITSKGGHFLE   83 (257)
Q Consensus        71 ~~--~~~~~g~~~~~   83 (257)
                      +.  .+...|+..+|
T Consensus        86 ~~a~~~ae~gi~~id  100 (310)
T COG4569          86 KNAAALAEAGIRLID  100 (310)
T ss_pred             cchHhHHhcCCceee
Confidence            66  67778888777

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=96.06  E-value=0.0094  Score=51.28  Aligned_cols=33  Identities=33%  Similarity=0.545  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|.-|.++|..|+++|++|++++++++
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~   35 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPD   35 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence            799999999999999999999999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.06  E-value=0.018  Score=48.06  Aligned_cols=43  Identities=26%  Similarity=0.351  Sum_probs=35.1

Q ss_pred             Ce-EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            1 ME-VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         1 mk-I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      || +-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+.+
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   45 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAAG   45 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC
Confidence            55 45555 499999999999999999999999988877665543

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=96.04  E-value=0.022  Score=49.55  Aligned_cols=64  Identities=23%  Similarity=0.284  Sum_probs=46.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcc-c------CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV-G------GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~-~------~~~~~~~~~~dvii~~v   64 (257)
                      |||.|.| +|.+|..+++.|+++|++|++.+|++++.+.+...     ++.. .      ....+++++.|+||-+.
T Consensus        11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A   87 (353)
T PLN02896         11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA   87 (353)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence            6899998 59999999999999999999999987765544321     1111 1      12345566789888765

>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]

Probab=96.04  E-value=0.031  Score=49.81  Aligned_cols=124  Identities=19%  Similarity=0.213  Sum_probs=79.2

Q ss_pred             eEEEEcCChhH-HHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHH-hhcCceEEEcc--CChHHHHHHHHh
Q 025163            2 EVGFLGLGIMG-KAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEV-IKKCTITIGML--ADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~G~mG-~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~-~~~~dvii~~v--~~~~~~~~~~~~   76 (257)
                      ||-|||-|..| +++|..|.+.||+|+..|.+... .++|.+.|+.+.....+. +.+.++||...  +.+...-.....
T Consensus         9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e   88 (459)
T COG0773           9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAALE   88 (459)
T ss_pred             eEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHHHH
Confidence            58899998888 57999999999999999987554 567888898765433222 45666666543  332222225777


Q ss_pred             cCCcEEeccccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCC-eEEeC
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKK-AFFLG  127 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~-~~~~g  127 (257)
                      +++.++.-|-.-..-...  ...+.++|   ...+-..+..+|...|.. .+.+|
T Consensus        89 ~~ipi~~r~e~Laelm~~--~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iG  141 (459)
T COG0773          89 RGIPVISRAEMLAELMRF--RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIG  141 (459)
T ss_pred             cCCCeEcHHHHHHHHHhC--CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEEC
Confidence            888888766332222222  22444443   455556788899888644 34455

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.03  E-value=0.097  Score=45.31  Aligned_cols=82  Identities=13%  Similarity=0.109  Sum_probs=58.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccC-----CHHHHhh---cCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-----SPAEVIK---KCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~~---~~dvii~~v~~~~~~~~   72 (257)
                      ++.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-     +..+..+   ..|++|-|+..+.....
T Consensus       172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~~  251 (343)
T PRK09880        172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSINT  251 (343)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHHH
Confidence            58899999999999999888897 688899999999988888864321     2333322   37999999987654443


Q ss_pred             --HHHhcCCcEEe
Q 025163           73 --AITSKGGHFLE   83 (257)
Q Consensus        73 --~~~~~g~~~~~   83 (257)
                        .....+..++.
T Consensus       252 ~~~~l~~~G~iv~  264 (343)
T PRK09880        252 CLEVTRAKGVMVQ  264 (343)
T ss_pred             HHHHhhcCCEEEE
Confidence              22234444444

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=96.02  E-value=0.012  Score=49.81  Aligned_cols=63  Identities=24%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC-----c--ccCCHHHHhhcC-ceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-----T--VGGSPAEVIKKC-TITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~-----~--~~~~~~~~~~~~-dvii~~v   64 (257)
                      |+|.|.| .|.+|..++..|.+.||+|.+++|......... .+.     .  -.....+.++.. |.||-+.
T Consensus         1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a   72 (314)
T COG0451           1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL-SGVEFVVLDLTDRDLVDELAKGVPDAVIHLA   72 (314)
T ss_pred             CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc-cccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence            6789999 599999999999999999999999877655432 111     1  112233344555 8888764

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.02  E-value=0.099  Score=44.04  Aligned_cols=117  Identities=17%  Similarity=0.278  Sum_probs=78.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|++++..              +.++.+.++++|+||.++..+.......-..|..
T Consensus       161 ~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~~~~vk~Gav  226 (288)
T PRK14171        161 NVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLTAEYFNPESI  226 (288)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccCHHHcCCCCE
Confidence            6889987 568999999999999999988642              1357788899999999998887666556667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      .+|..+....    .+.    ..||-+ ++.+++..+.+..   .-|.+|.-...-+..|++.+
T Consensus       227 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~a  278 (288)
T PRK14171        227 VIDVGINRIS----GNK----IIGDVD-FENVKSKVKYITP---VPGGIGPMTIAFLLKNTVKA  278 (288)
T ss_pred             EEEeeccccC----CCC----eECCcc-HHHHHhhceEeCC---CCCCcHHHHHHHHHHHHHHH
Confidence            8887765321    122    224433 3344444333322   13446766777777777644

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.01  E-value=0.083  Score=44.47  Aligned_cols=116  Identities=22%  Similarity=0.307  Sum_probs=78.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|++++..              +.++.+.++++|+||.++..+.......-..|..
T Consensus       160 ~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~i~~~~ik~gav  225 (284)
T PRK14190        160 HVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKLITADMVKEGAV  225 (284)
T ss_pred             EEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCcCCHHHcCCCCE
Confidence            6889986 678999999999999999998642              1367788899999999998887665555567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    ..||-+ ++.+.+.-..+.+   .-|.+|.-...-+..|++.
T Consensus       226 VIDvGi~~~~----~gk----l~GDvd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~~  276 (284)
T PRK14190        226 VIDVGVNRLE----NGK----LCGDVD-FDNVKEKASYITP---VPGGVGPMTITMLMHNTVE  276 (284)
T ss_pred             EEEeeccccC----CCC----eeccCc-HHHHhhhceEecC---CCCCChHHHHHHHHHHHHH
Confidence            8887765321    122    234433 2344444333322   1344677777777777663

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.00  E-value=0.095  Score=44.04  Aligned_cols=116  Identities=17%  Similarity=0.241  Sum_probs=78.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|+++....              .++.+..++||+||.++..+.......-..|..
T Consensus       159 ~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~~~vk~Gav  224 (282)
T PRK14166        159 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVI  224 (282)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence            6889987 5689999999999999999887532              357788899999999999887766656677888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    ..||-+ ++.+.+..+.+.+   .-|.+|.-...-+..|++.
T Consensus       225 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~  275 (282)
T PRK14166        225 VVDVGINRLE----SGK----IVGDVD-FEEVSKKSSYITP---VPGGVGPMTIAMLLENTVK  275 (282)
T ss_pred             EEEecccccC----CCC----eeCCCC-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHH
Confidence            8887765421    122    223332 2334444333322   1244676667777777663

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.98  E-value=0.1  Score=43.81  Aligned_cols=111  Identities=19%  Similarity=0.282  Sum_probs=76.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|++++..              +.++.+..+++|+||.++..+.......-..|..
T Consensus       161 ~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~~~~ik~gav  226 (284)
T PRK14177        161 NAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIKADWISEGAV  226 (284)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccCHHHcCCCCE
Confidence            6889987 678999999999999999998743              2367788899999999998887766656667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI  142 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~  142 (257)
                      ++|..+...            ..||-+ ++.+.+..+.+..   .-|.+|.-...-+..|++
T Consensus       227 VIDvGin~~------------~~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~  272 (284)
T PRK14177        227 LLDAGYNPG------------NVGDIE-ISKAKDKSSFYTP---VPGGVGPMTIAVLLLQTL  272 (284)
T ss_pred             EEEecCccc------------ccCCcC-HHHHhhhccEecC---CCCCChHHHHHHHHHHHH
Confidence            888776431            234433 2334443332221   124467666677777765

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.97  E-value=0.021  Score=47.83  Aligned_cols=116  Identities=15%  Similarity=0.232  Sum_probs=76.8

Q ss_pred             eEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-+ ..|.+++..|...|..|+++.++.              .++.+.++++|+||.+++.+..+....-..|..
T Consensus       154 ~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~~~vk~Gav  219 (279)
T PRK14178        154 RAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITPDMVKPGAT  219 (279)
T ss_pred             EEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCHHHcCCCcE
Confidence            68899998 999999999999999999987642              367788899999999998665544444467888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+...     .+.    ..||-+ ++.+++.-..+..   .-|.+|.-...-+..|++.+
T Consensus       220 VIDVgi~~~-----~gk----l~GDvd-f~~~~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a  270 (279)
T PRK14178        220 VIDVGINQV-----NGK----LCGDVD-FDAVKEIAGAITP---VPGGVGPMTIATLMENTFDA  270 (279)
T ss_pred             EEEeecccc-----CCC----CcCCcc-HHHHHhhccCcCC---CCCCCHHHHHHHHHHHHHHH
Confidence            888776531     122    223322 3344444332222   12335666666677776643

>PRK08163 salicylate hydroxylase; Provisional

Probab=95.97  E-value=0.0097  Score=52.55  Aligned_cols=34  Identities=32%  Similarity=0.445  Sum_probs=31.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++|.|||+|..|.++|..|.+.|++|++++|+++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence            4799999999999999999999999999998754

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.96  E-value=0.11  Score=43.94  Aligned_cols=120  Identities=20%  Similarity=0.263  Sum_probs=79.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|++++...              .++.+.+++||+||.++..+.......-..|..
T Consensus       162 ~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~~~ik~gai  227 (294)
T PRK14187        162 DAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVKYSWIKKGAI  227 (294)
T ss_pred             EEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcCCCCE
Confidence            6889987 6789999999999999999987531              357788899999999999887766655567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+..-...   +. .- ..||-+ ++.+.+..+.+.+   .-|.+|.-....+..|++.+
T Consensus       228 VIDVGin~~~~~---~~-~k-l~GDvd-~e~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a  282 (294)
T PRK14187        228 VIDVGINSIEEG---GV-KK-FVGDVD-FAEVKKKASAITP---VPGGVGPMTIAFLMVNTVIA  282 (294)
T ss_pred             EEEecccccCCC---Cc-cc-eeCCcc-HHHHhhhccEecC---CCCCChHHHHHHHHHHHHHH
Confidence            888776532111   10 01 234433 3344443332222   12446777777777787643

>PRK07588 hypothetical protein; Provisional

Probab=95.96  E-value=0.01  Score=52.38  Aligned_cols=34  Identities=32%  Similarity=0.471  Sum_probs=31.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+|.|||.|..|..+|..|+++|++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            7899999999999999999999999999987654

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=95.96  E-value=0.016  Score=48.20  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             EEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|-|+ +.+|..+|+.|+++|++|+++.|+.++++++++
T Consensus         9 ~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~   48 (265)
T COG0300           9 ALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK   48 (265)
T ss_pred             EEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence            455576 999999999999999999999999999998876

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=95.95  E-value=0.01  Score=52.89  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=31.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~   34 (257)
                      |||.|||.|.-|.++|..|.++|+ +|++++|.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence            799999999999999999999985 9999998765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=95.94  E-value=0.0084  Score=53.08  Aligned_cols=36  Identities=31%  Similarity=0.477  Sum_probs=32.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~   36 (257)
                      |||.|+|. |.+|..+++.|.++|++|++++|++++.
T Consensus        61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~   97 (390)
T PLN02657         61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGI   97 (390)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhc
Confidence            57899976 9999999999999999999999987643

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.93  E-value=0.032  Score=44.08  Aligned_cols=86  Identities=8%  Similarity=0.164  Sum_probs=58.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH----HHHHHCCC---cccCCHHHHhhcCceEEEccCChHH-HHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGA---TVGGSPAEVIKKCTITIGMLADPAA-ALS   72 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~----~~l~~~g~---~~~~~~~~~~~~~dvii~~v~~~~~-~~~   72 (257)
                      ++.|||- ..+|.+++..|.++|..|+++|.+.-..    .++....-   ....++.+.+++||+||.+++.+.. +..
T Consensus        64 ~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~~  143 (197)
T cd01079          64 TITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVPT  143 (197)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccCH
Confidence            6889987 5689999999999999999998653221    00000000   0011267888999999999998876 554


Q ss_pred             HHHhcCCcEEecccc
Q 025163           73 AITSKGGHFLEAPVS   87 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~   87 (257)
                      ..-..|..++|..+.
T Consensus       144 d~ik~GavVIDVGi~  158 (197)
T cd01079         144 ELLKDGAICINFASI  158 (197)
T ss_pred             HHcCCCcEEEEcCCC
Confidence            455567777776644

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>TIGR03855 NAD_NadX aspartate dehydrogenase

Probab=95.92  E-value=0.098  Score=42.74  Aligned_cols=56  Identities=20%  Similarity=0.308  Sum_probs=45.0

Q ss_pred             EEEEcCCchhHHHHHHC-CCcccCCHHHHh-hcCceEEEccCChHHHHH--HHHhcCCcE
Q 025163           26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALS--AITSKGGHF   81 (257)
Q Consensus        26 V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~--~~~~~g~~~   81 (257)
                      +.+||+++++.+.+.+. |+...+++++++ .+.|+|++|+|+....+.  .....|.++
T Consensus         5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~~aL~aGkhV   64 (229)
T TIGR03855         5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAEKILKNGKDL   64 (229)
T ss_pred             EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHHHHHHCCCCE
Confidence            56789999999888764 778888999986 579999999999988776  444566654

Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.88  E-value=0.11  Score=43.58  Aligned_cols=116  Identities=16%  Similarity=0.229  Sum_probs=76.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|+++....              .++.+.++++|+||.++..+.......-..|..
T Consensus       158 ~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~~~~vk~Gav  223 (282)
T PRK14169        158 RVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIGADAVKPGAV  223 (282)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcCCCcE
Confidence            6889986 5689999999999999999885421              257788899999999999887766656667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+..-.    .+.   ++ ||-+ ++.+.+.-..+.+   .-|.+|.-...-+..|++.
T Consensus       224 VIDvGin~~~----~gk---l~-GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  274 (282)
T PRK14169        224 VIDVGISRGA----DGK---LL-GDVD-EAAVAPIASAITP---VPGGVGPMTIASLMAQTVT  274 (282)
T ss_pred             EEEeeccccC----CCC---ee-ecCc-HHHHHhhccEecC---CCCCcHHHHHHHHHHHHHH
Confidence            8887765321    122   22 3322 2333333332222   1234566666677777653

>PRK12320 hypothetical protein; Provisional

Probab=95.85  E-value=0.014  Score=55.09  Aligned_cols=63  Identities=13%  Similarity=0.150  Sum_probs=46.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----c-CCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----G-GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~-~~~~~~~~~~dvii~~v~~   66 (257)
                      |||.|.| +|.+|+.++..|.+.||+|++++|++....   ..++..     . ....+++.++|+||-+.+.
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~   70 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAPV   70 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCcc
Confidence            8999998 699999999999999999999998754321   112211     1 1234556789999998864

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.84  E-value=0.021  Score=49.29  Aligned_cols=61  Identities=23%  Similarity=0.360  Sum_probs=44.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcccC----CHHHHhhcCceEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGG----SPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~----~~~~~~~~~dvii   61 (257)
                      |+|||||.|..|.-|+..-.+-|++|.+.|.+++.-. +..+.-+....    .+.++++.||+|=
T Consensus         2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT   67 (375)
T COG0026           2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVIT   67 (375)
T ss_pred             CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEE
Confidence            4699999999999999999999999999998776533 23333222222    3556778888774

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=95.84  E-value=0.14  Score=43.45  Aligned_cols=122  Identities=20%  Similarity=0.303  Sum_probs=78.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|++++..              +.++.+.++++|+||.++..+.......-..|..
T Consensus       169 ~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~~~~vk~gav  234 (299)
T PLN02516        169 KAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIKGDWIKPGAA  234 (299)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCCE
Confidence            6889987 568999999999999999999653              2367788999999999998876655555567888


Q ss_pred             EEeccccCCccccc-cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAE-TGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+..-..... .+.  - ..||-+ ++.+.+..+.+..   .-|.+|.-....+..|++.+
T Consensus       235 VIDvGin~~~~~~~~~g~--k-l~GDvd-~e~v~~~a~~iTP---VPGGVGp~T~a~L~~N~v~a  292 (299)
T PLN02516        235 VIDVGTNAVSDPSKKSGY--R-LVGDVD-FAEVSKVAGWITP---VPGGVGPMTVAMLLKNTVDG  292 (299)
T ss_pred             EEEeeccccCcccccCCC--c-eEcCcC-hHHhhhhceEecC---CCCCchHHHHHHHHHHHHHH
Confidence            88877654221111 121  1 234432 2334433332221   23446777777777777643

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=95.83  E-value=0.021  Score=50.62  Aligned_cols=66  Identities=11%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             CeEEEEcCChhHHHHH-HHHHHC-----CCeEEEEcCCchhHHHH-------HH-CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAIS-MNLLRN-----GFKVTVWNRTLSKCDEL-------VA-HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la-~~L~~~-----g~~V~~~~r~~~~~~~l-------~~-~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      +||+|||.|+...+.- ..+..+     +.++.++|.++++.+..       .+ .|    +..++|.+++++++|+|+.
T Consensus         4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~g~~~kv~~ttd~~eAl~gAdfVi~   83 (442)
T COG1486           4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEAGAPVKVEATTDRREALEGADFVIT   83 (442)
T ss_pred             ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhhCCCeEEEEecCHHHHhcCCCEEEE
Confidence            4799999999887632 222222     45899999998887632       21 23    3457899999999999999


Q ss_pred             ccCC
Q 025163           63 MLAD   66 (257)
Q Consensus        63 ~v~~   66 (257)
                      +.-.
T Consensus        84 ~~rv   87 (442)
T COG1486          84 QIRV   87 (442)
T ss_pred             EEee
Confidence            9743

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=95.83  E-value=0.038  Score=47.30  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=55.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCe---EEEEc--CCchhH-HHHHHCCCcccCC--HHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVWN--RTLSKC-DELVAHGATVGGS--PAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~---V~~~~--r~~~~~-~~l~~~g~~~~~~--~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +||+|+|+ |.+|..|.+.|.+..+.   +.++.  |+..+- -++......+..+  .....+++|++|.|.+.....+
T Consensus         2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~~   81 (334)
T COG0136           2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSKE   81 (334)
T ss_pred             cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHHH
Confidence            58999976 99999999999997542   44443  333322 3333332333322  1123468999999999776654


Q ss_pred             H--HHHhcCCcEEecc
Q 025163           72 S--AITSKGGHFLEAP   85 (257)
Q Consensus        72 ~--~~~~~g~~~~~~p   85 (257)
                      .  .+...|+.++|+.
T Consensus        82 ~~p~~~~~G~~VIdns   97 (334)
T COG0136          82 VEPKAAEAGCVVIDNS   97 (334)
T ss_pred             HHHHHHHcCCEEEeCC
Confidence            4  7778888888843

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.82  E-value=0.026  Score=47.74  Aligned_cols=31  Identities=29%  Similarity=0.447  Sum_probs=27.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~   32 (257)
                      ||.|||+|..|..++++|+..|. +++++|.+
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D   32 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSG   32 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            68999999999999999999995 57777643

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK08309 short chain dehydrogenase; Provisional

Probab=95.80  E-value=0.027  Score=44.14  Aligned_cols=41  Identities=29%  Similarity=0.298  Sum_probs=35.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |++.|+|...+|..++..|.+.|++|.+.+|++++.+.+..
T Consensus         1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~   41 (177)
T PRK08309          1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKR   41 (177)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHH
Confidence            88999998778889999999999999999999887766543

>PRK07236 hypothetical protein; Provisional

Probab=95.78  E-value=0.014  Score=51.54  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=31.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++|.|||+|..|..+|..|.++|++|+++++.+.
T Consensus         7 ~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          7 PRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4799999999999999999999999999998754

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=95.75  E-value=0.015  Score=48.84  Aligned_cols=63  Identities=19%  Similarity=0.323  Sum_probs=45.0

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhcCceEEEccC
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvii~~v~   65 (257)
                      |.|.| +|.+|+.+++.|.+.|++|++.+|+++....+...+...  ..+..+.+.++|+||-|..
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~   66 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG   66 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence            35666 599999999999999999999999887654332222111  1234456678999998874

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.74  E-value=0.03  Score=48.91  Aligned_cols=82  Identities=17%  Similarity=0.309  Sum_probs=50.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH-HCCCe---EEEEcCCch--hHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNRTLS--KCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~-~~g~~---V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |+|+|||+ |.+|..|.+.++ ...++   +..+....+  +...+......+.  .++. ..+++|++|+|+|.....+
T Consensus         2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~-~~~~~Divf~a~~~~~s~~   80 (369)
T PRK06598          2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDID-ALKKLDIIITCQGGDYTNE   80 (369)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChh-HhcCCCEEEECCCHHHHHH
Confidence            58999998 999999998554 45565   666644311  1212222112222  2333 3478999999999886655


Q ss_pred             H--HHHhcCC--cEEe
Q 025163           72 S--AITSKGG--HFLE   83 (257)
Q Consensus        72 ~--~~~~~g~--~~~~   83 (257)
                      .  .+...|.  .++|
T Consensus        81 ~~~~~~~aG~~~~VID   96 (369)
T PRK06598         81 VYPKLRAAGWQGYWID   96 (369)
T ss_pred             HHHHHHhCCCCeEEEE
Confidence            4  4556674  3777

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=95.74  E-value=0.033  Score=47.40  Aligned_cols=62  Identities=18%  Similarity=0.132  Sum_probs=51.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      +|+|||.-.==..+++.|.+.|++|.++.-..+.   ....|+...++.+++++++|+|++.+|.
T Consensus         4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~   65 (296)
T PRK08306          4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPG   65 (296)
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCcc
Confidence            7999999999999999999999999987654321   1234888888888999999999999875

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=95.73  E-value=0.033  Score=47.87  Aligned_cols=70  Identities=23%  Similarity=0.216  Sum_probs=58.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++.|.|.|-.|...|.++.-.|.+|.++..+|=+.-+..=.|..+. ..+|++..+|++|.|+-+......
T Consensus       211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~  280 (420)
T COG0499         211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRK  280 (420)
T ss_pred             eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCH
Confidence            4567799999999999999999999999999887766666687666 578899999999999987665543

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.73  E-value=0.025  Score=46.78  Aligned_cols=40  Identities=20%  Similarity=0.283  Sum_probs=35.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      |++-|.|. |.+|.++++.|+++|++|++.+|++++++++.
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~   41 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL   41 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence            78999976 88999999999999999999999988766554

>PRK05868 hypothetical protein; Validated

Probab=95.71  E-value=0.016  Score=51.01  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=31.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+|.|||.|..|..+|..|.++|++|+++++.++
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~   35 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG   35 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence            4699999999999999999999999999998765

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.70  E-value=0.042  Score=46.59  Aligned_cols=40  Identities=20%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +|-|.|+ |.+|..++..|+++|++|++.+|+.++++.+.+
T Consensus        42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~   82 (293)
T PRK05866         42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD   82 (293)
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            4667775 999999999999999999999999887766543

>PLN02214 cinnamoyl-CoA reductase

Probab=95.67  E-value=0.034  Score=48.23  Aligned_cols=65  Identities=20%  Similarity=0.163  Sum_probs=45.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHH-----HHHHC--CCcc-------cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-----ELVAH--GATV-------GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----~l~~~--g~~~-------~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|. |.+|..++..|.++|++|++..|+.++..     .+...  .+..       ..+..++++++|+||-+..
T Consensus        11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~   90 (342)
T PLN02214         11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS   90 (342)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence            46888987 99999999999999999999999866422     12111  1111       1234556778999988764

>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein

Probab=95.67  E-value=0.14  Score=47.37  Aligned_cols=109  Identities=13%  Similarity=0.129  Sum_probs=63.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEE--cCCchhHH---HH---HHC---CC-------cccCCHHHHhhcCceEEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVW--NRTLSKCD---EL---VAH---GA-------TVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~--~r~~~~~~---~l---~~~---g~-------~~~~~~~~~~~~~dvii~   62 (257)
                      ||+|||+|.+|+.+...|++.|. ++.++  |+-...+.   ++   ++.   ++       ....+..+.+++.|+|+.
T Consensus       131 kVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~ev~~~~DiVi~  210 (637)
T TIGR03693       131 KILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHEAFEPADWVLY  210 (637)
T ss_pred             cEEEEecCchHHHHHHHHHhcCCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHHhhcCCcEEEE
Confidence            79999999999999999999996 45444  55433222   22   111   21       123356677899999997


Q ss_pred             ccCChHHHHH-----HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHH
Q 025163           63 MLADPAAALS-----AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAIS  114 (257)
Q Consensus        63 ~v~~~~~~~~-----~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~  114 (257)
                      .+.++...+.     .....|..++-+-..|.  ....|  +++..+...+++.+..
T Consensus       211 vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~--~~liG--PlftPgkTGCWeCa~~  263 (637)
T TIGR03693       211 VSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ--VGLAG--PVFQQHGDECFEAAWH  263 (637)
T ss_pred             ECCCCChHHHHHHHHHHHHcCCCeEEEEEccc--ceeec--ceECCCCCcHHHHHHH
Confidence            7776654433     44455644443222211  11122  2333455566666543

Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=95.62  E-value=0.027  Score=46.38  Aligned_cols=66  Identities=15%  Similarity=0.128  Sum_probs=53.1

Q ss_pred             EEEEcCChhHHHHHHHHHHCC---CeEEEEcCCchhHHHHHHC------C----CcccCCHHHHhhcCceEEEccCChH
Q 025163            3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH------G----ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g---~~V~~~~r~~~~~~~l~~~------g----~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ..++|.|..+........+.-   .+|.+|+|+++..+++++.      .    +....+.++++..+|+|+.|+++..
T Consensus       141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atlste  219 (333)
T KOG3007|consen  141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLSTE  219 (333)
T ss_pred             EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEeccccCC
Confidence            578999999998888777643   4799999999998888762      1    3456688899999999999998653

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.62  E-value=0.07  Score=45.17  Aligned_cols=71  Identities=23%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHH-------HHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA-------EVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~-------~~~-----~~~dvii~~v~~~~   68 (257)
                      .++|+|+|.+|.+.+..-..+|. +++.+|.|++|.+..++.|++-.-++.       |.+     .+.|+-|-|+-..+
T Consensus       195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~~  274 (375)
T KOG0022|consen  195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNVS  274 (375)
T ss_pred             EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCHH
Confidence            58999999999999999999986 699999999999999999875443433       322     25788888888887


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ...+
T Consensus       275 ~m~~  278 (375)
T KOG0022|consen  275 TMRA  278 (375)
T ss_pred             HHHH
Confidence            7766

>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2

Probab=95.60  E-value=0.09  Score=46.96  Aligned_cols=88  Identities=19%  Similarity=0.192  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC------eEEEEcCCchh-------------------H----HHHHHCC--Ccc----
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLSK-------------------C----DELVAHG--ATV----   46 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~------~V~~~~r~~~~-------------------~----~~l~~~g--~~~----   46 (257)
                      ||.|||+|.+|..++++|+..|.      +++++|.+.=.                   .    +.+++.+  +++    
T Consensus         1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~   80 (435)
T cd01490           1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ   80 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence            68999999999999999999997      79999865321                   1    1111111  111    


Q ss_pred             ---cCC-H----HHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccCC
Q 025163           47 ---GGS-P----AEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGS   89 (257)
Q Consensus        47 ---~~~-~----~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~   89 (257)
                         ... .    .+..++.|+|+.|+-+......   .....++.++++...|.
T Consensus        81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~  134 (435)
T cd01490          81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGT  134 (435)
T ss_pred             cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccc
Confidence               100 0    2445789999999877655433   55556777777665443

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.

>PLN02650 dihydroflavonol-4-reductase

Probab=95.59  E-value=0.045  Score=47.52  Aligned_cols=64  Identities=27%  Similarity=0.400  Sum_probs=45.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH----CC----C-------cccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----HG----A-------TVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~----~g----~-------~~~~~~~~~~~~~dvii~~v   64 (257)
                      ++|.|.|+ |.+|..++..|++.|++|++.+|+++..+.+..    .+    +       .-..+..++++++|.||-+.
T Consensus         6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A   85 (351)
T PLN02650          6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA   85 (351)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence            46888875 999999999999999999999888765543322    11    1       11123456677889888765

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.59  E-value=0.25  Score=41.61  Aligned_cols=121  Identities=20%  Similarity=0.306  Sum_probs=78.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~   76 (257)
                      ++.|||- ..+|.+++..|.++    +..|++++..              +.++.+.++++|+||.++..+.......-.
T Consensus       155 ~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~~~~ik  220 (287)
T PRK14181        155 HVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIKEEMIA  220 (287)
T ss_pred             EEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence            6889987 56899999999988    6789988642              126778889999999999888776665667


Q ss_pred             cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      .|...+|..+..-......+.  -+ .||-+ ++.+.+.-+.+..   .-|.+|.-...-+..|++.
T Consensus       221 ~GavVIDvGin~~~~~~~~g~--kl-~GDVd-~e~~~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  280 (287)
T PRK14181        221 EKAVIVDVGTSRVPAANPKGY--IL-VGDVD-FNNVVPKCRAITP---VPGGVGPMTVAMLMRNTWE  280 (287)
T ss_pred             CCCEEEEecccccccccCCCC--ee-Eeccc-hHHHHhhcccccC---CCCchHHHHHHHHHHHHHH
Confidence            788888877654211111121  12 33332 3344444443332   2344666666777777663

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=95.58  E-value=0.014  Score=51.61  Aligned_cols=32  Identities=34%  Similarity=0.664  Sum_probs=30.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      ++|.|||+|..|..+|..|.+.|++|+++++.
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~   34 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERA   34 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence            46999999999999999999999999999997

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=95.58  E-value=0.02  Score=49.22  Aligned_cols=31  Identities=35%  Similarity=0.588  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +|.|||.|..|..+|..|++.|++|++++++
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            5899999999999999999999999999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=95.57  E-value=0.03  Score=47.01  Aligned_cols=56  Identities=14%  Similarity=0.189  Sum_probs=39.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcC--ceEEEccC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC--TITIGMLA   65 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~--dvii~~v~   65 (257)
                      ||.|+|. |.+|..+++.|.+.|++|++++|+..        .+.-..+..+++++.  |+||-|..
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~~~--------d~~~~~~~~~~~~~~~~d~vi~~a~   59 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSSQL--------DLTDPEALERLLRAIRPDAVVNTAA   59 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCccc--------CCCCHHHHHHHHHhCCCCEEEECCc
Confidence            6889985 99999999999999999999988521        111112333444444  88887764

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.56  E-value=0.031  Score=47.36  Aligned_cols=62  Identities=11%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      ++|+|||.-.==..+++.|.+.|++|.++.-.... +.+  .|+....+.+++++++|+||+++|
T Consensus         2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~   63 (287)
T TIGR02853         2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVP   63 (287)
T ss_pred             cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCc
Confidence            58999999999999999999999999999753210 111  266777778888899999999999

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=95.55  E-value=0.057  Score=48.85  Aligned_cols=33  Identities=27%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ++|.|||.|..|...|..|.+.|++|+++++++
T Consensus       141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~  173 (457)
T PRK11749        141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD  173 (457)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence            479999999999999999999999999998764

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=95.54  E-value=0.016  Score=48.95  Aligned_cols=57  Identities=25%  Similarity=0.341  Sum_probs=37.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~   65 (257)
                      |||.|+| .|.+|..+.+.|.+.|++|..++|+.-.        +.-.....+.++  ..|+||-|..
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~d--------l~d~~~~~~~~~~~~pd~Vin~aa   60 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRSDLD--------LTDPEAVAKLLEAFKPDVVINCAA   60 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS---------TTSHHHHHHHHHHH--SEEEE---
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcC--------CCCHHHHHHHHHHhCCCeEeccce
Confidence            9999999 5999999999999999999999886111        111112223332  4799998863

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.53  E-value=0.033  Score=45.22  Aligned_cols=39  Identities=28%  Similarity=0.307  Sum_probs=33.8

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|.|+|+ |.+|..+++.|+++|++|++.+|++++.+++.
T Consensus         8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~   47 (237)
T PRK07326          8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA   47 (237)
T ss_pred             EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence            4778875 99999999999999999999999988766554

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.52  E-value=0.058  Score=45.40  Aligned_cols=119  Identities=18%  Similarity=0.283  Sum_probs=77.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|+++...              +.++.+.++++|+||.++..+.......-..|..
T Consensus       157 ~vvViGrS~iVGkPla~lL~~~~aTVtichs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~vk~Gav  222 (287)
T PRK14173        157 EVVVVGRSNIVGKPLAALLLREDATVTLAHSK--------------TQDLPAVTRRADVLVVAVGRPHLITPEMVRPGAV  222 (287)
T ss_pred             EEEEECCCCccHHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence            6889987 678999999999999999988653              1257788899999999998887666555577888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+..-..  ..+.  ....||-+  +.+.+.-..+.+   .-|.+|.-...-+..|++.
T Consensus       223 VIDVGin~~~~--~~gk--~~l~GDVd--~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  276 (287)
T PRK14173        223 VVDVGINRVGG--NGGR--DILTGDVH--PEVAEVAGALTP---VPGGVGPMTVAMLMANTVI  276 (287)
T ss_pred             EEEccCccccC--CCCc--eeeecccc--HhHHhhCcEEec---CCCChhHHHHHHHHHHHHH
Confidence            99977654211  1222  11233333  123333222221   1234666677777777663

>PLN00016 RNA-binding protein; Provisional

Probab=95.51  E-value=0.03  Score=49.25  Aligned_cols=65  Identities=22%  Similarity=0.365  Sum_probs=46.0

Q ss_pred             CeEEEE----c-CChhHHHHHHHHHHCCCeEEEEcCCchhHH-----------HHHHCCCcc-cCCHHH---Hh--hcCc
Q 025163            1 MEVGFL----G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHGATV-GGSPAE---VI--KKCT   58 (257)
Q Consensus         1 mkI~iI----G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~-----------~l~~~g~~~-~~~~~~---~~--~~~d   58 (257)
                      |||.|+    | .|.+|..+++.|.+.||+|++++|+++...           .+...|++. ..|+.+   ++  .++|
T Consensus        53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~~~~d  132 (378)
T PLN00016         53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAGAGFD  132 (378)
T ss_pred             ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhccCCcc
Confidence            479999    6 599999999999999999999999876432           222334432 224433   33  3689


Q ss_pred             eEEEccC
Q 025163           59 ITIGMLA   65 (257)
Q Consensus        59 vii~~v~   65 (257)
                      +||-+..
T Consensus       133 ~Vi~~~~  139 (378)
T PLN00016        133 VVYDNNG  139 (378)
T ss_pred             EEEeCCC
Confidence            9988754

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=95.51  E-value=0.06  Score=46.08  Aligned_cols=64  Identities=25%  Similarity=0.289  Sum_probs=44.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHH---HHH-CC----Cc-------ccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVA-HG----AT-------VGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~---l~~-~g----~~-------~~~~~~~~~~~~dvii~~v   64 (257)
                      ++|.|.| .|.+|..++..|.++|++|++..|+.++.+.   +.. .+    +.       -..+..++++++|+||-+.
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A   85 (322)
T PLN02986          6 KLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTA   85 (322)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeC
Confidence            3688887 5999999999999999999988887664332   221 11    11       1123456677899988775

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.50  E-value=0.051  Score=46.57  Aligned_cols=65  Identities=22%  Similarity=0.204  Sum_probs=45.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH---H-CC----Cc-------ccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV---A-HG----AT-------VGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~---~-~g----~~-------~~~~~~~~~~~~dvii~~v   64 (257)
                      |+|.|.|. |.+|..++..|++.|++|++.+|++++.+...   . .+    +.       -..+..+++++.|+||-+.
T Consensus         6 k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A   85 (325)
T PLN02989          6 KVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTA   85 (325)
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeC
Confidence            46778874 99999999999999999998888876543321   1 11    11       1123445667889988876


Q ss_pred             C
Q 025163           65 A   65 (257)
Q Consensus        65 ~   65 (257)
                      .
T Consensus        86 ~   86 (325)
T PLN02989         86 S   86 (325)
T ss_pred             C
Confidence            4

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=95.50  E-value=0.16  Score=46.01  Aligned_cols=105  Identities=16%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCC
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPA  196 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~  196 (257)
                      +.++.+|.++|.+.+..+.+++|.+.+.++      +++|...+.++++.+.. .+++++...      +.+.+--+++.
T Consensus       316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~~l~nl~~~~~  395 (470)
T PTZ00142        316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNPQLDLLFLDPD  395 (470)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCCChhhhcCCHH
Confidence            678999999999999999999999999884      27999999999998864 344443211      11111111222


Q ss_pred             c--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163          197 F--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR  234 (257)
Q Consensus       197 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~  234 (257)
                      |  .+......++.++..+-+.|+|+|.+.+...-+....
T Consensus       396 ~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~~  435 (470)
T PTZ00142        396 FNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMYR  435 (470)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Confidence            2  1233455668899999999999999999888555443

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=95.49  E-value=0.019  Score=51.07  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++|.|||+|..|.++|..|.++|++|+++++.+.
T Consensus        19 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~   52 (415)
T PRK07364         19 YDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA   52 (415)
T ss_pred             cCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence            3699999999999999999999999999988654

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=95.49  E-value=0.033  Score=48.41  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=30.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||.|.|+ |.+|..++..|.++|++|+++||...
T Consensus        16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~   50 (348)
T PRK15181         16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFST   50 (348)
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            57899985 99999999999999999999998543

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.036  Score=45.35  Aligned_cols=40  Identities=28%  Similarity=0.433  Sum_probs=34.0

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      +-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+.
T Consensus         4 vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          4 VLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             EEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence            44555 69999999999999999999999998887777653

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.47  E-value=0.036  Score=45.35  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=34.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|.|+|+ |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus         7 ~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~   46 (251)
T PRK07231          7 VAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVA   46 (251)
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            5788875 99999999999999999999999988766554

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.053  Score=45.24  Aligned_cols=39  Identities=21%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|-|.|+ |.+|..+++.|+++|++|++++|++++.+.+.
T Consensus         9 ~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~   48 (276)
T PRK05875          9 TYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAA   48 (276)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            5778886 89999999999999999999999987765543

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.43  E-value=0.22  Score=41.85  Aligned_cols=116  Identities=20%  Similarity=0.294  Sum_probs=76.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.+++..|++++..              +.++.+..++||+||.++..+.......-..|..
T Consensus       159 ~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~~~~ik~gai  224 (282)
T PRK14182        159 RALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVKGAWVKEGAV  224 (282)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence            6889976 668999999999999999998653              2356788899999999998776665555567888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+....    .+.    ..||-+ ++.+++....+..   .-|.+|.-...-+..|++.
T Consensus       225 VIDvGin~~~----~gk----l~GDVd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  275 (282)
T PRK14182        225 VIDVGMNRLA----DGK----LVGDVE-FAAAAARASAITP---VPGGVGPMTRAMLLVNTVE  275 (282)
T ss_pred             EEEeeceecC----CCC----eeCCCC-HHHHHhhccEecC---CCCCChHHHHHHHHHHHHH
Confidence            8887765321    122    233332 3334444333322   1244666666777777653

>PRK06847 hypothetical protein; Provisional

Probab=95.42  E-value=0.022  Score=49.89  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||.|..|..+|..|.+.|++|++++++++
T Consensus         6 ~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847          6 KVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            699999999999999999999999999998754

>PLN02686 cinnamoyl-CoA reductase

Probab=95.42  E-value=0.045  Score=48.05  Aligned_cols=39  Identities=31%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l   39 (257)
                      ++|.|.|. |.+|..+++.|+++|++|+++.|+.+..+.+
T Consensus        54 k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l   93 (367)
T PLN02686         54 RLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL   93 (367)
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            46778875 9999999999999999999888887665544

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.41  E-value=0.068  Score=44.78  Aligned_cols=114  Identities=25%  Similarity=0.345  Sum_probs=78.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|++++..              +.++.+.++++|+||.++..+.......-..|..
T Consensus       160 ~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~~~ik~gav  225 (278)
T PRK14172        160 EVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDEEYVKEGAI  225 (278)
T ss_pred             EEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCHHHcCCCcE
Confidence            6889986 678999999999999999999753              2367788899999999999887766555667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI  142 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~  142 (257)
                      .+|..+...     .+.    +.||-+ ++.+.+..+.+..   .-|.+|.-...-+..|++
T Consensus       226 VIDvGin~~-----~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~  274 (278)
T PRK14172        226 VIDVGTSSV-----NGK----ITGDVN-FDKVIDKASYITP---VPGGVGSLTTTLLIKNVC  274 (278)
T ss_pred             EEEeecccc-----CCc----eeeecc-HHHHHhhccEecC---CCCCccHHHHHHHHHHHH
Confidence            888766532     122    234433 3445554433332   234467666677777765

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.40  E-value=0.057  Score=45.70  Aligned_cols=69  Identities=22%  Similarity=0.306  Sum_probs=46.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCc-------ccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GAT-------VGG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~-------~~~   48 (257)
                      ||.|||+|.+|..++++|+..|. +++++|-+.=                   |++.    +.+.  +++       ...
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~   80 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD   80 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence            68999999999999999999996 5888875421                   1111    1111  111       122


Q ss_pred             CHHHHhhcCceEEEccCChHHH
Q 025163           49 SPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus        49 ~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ...+..++.|+||.|+-+....
T Consensus        81 ~~~~f~~~fdvVi~alDn~~aR  102 (291)
T cd01488          81 KDEEFYRQFNIIICGLDSIEAR  102 (291)
T ss_pred             hhHHHhcCCCEEEECCCCHHHH
Confidence            2346678999999998876553

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK14851 hypothetical protein; Provisional

Probab=95.39  E-value=0.076  Score=50.28  Aligned_cols=87  Identities=14%  Similarity=0.140  Sum_probs=56.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCc-------c-c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GAT-------V-G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~-------~-~   47 (257)
                      ||+|+|+|.+|+.++..|++.|. +++++|-+.=                   |++.+++    .  .+.       + .
T Consensus        45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~  124 (679)
T PRK14851         45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA  124 (679)
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence            79999999999999999999996 5777764321                   2221211    1  111       1 1


Q ss_pred             CCHHHHhhcCceEEEccCChH-HHH----HHHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPA-AAL----SAITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~-~~~----~~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||-|+.+.. ...    ......++.++.+.+.+
T Consensus       125 ~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G  170 (679)
T PRK14851        125 DNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLG  170 (679)
T ss_pred             HHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeccc
Confidence            244567889999998886532 111    14556788888766443

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.38  E-value=0.023  Score=52.39  Aligned_cols=34  Identities=32%  Similarity=0.526  Sum_probs=28.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      .||+|||+|.-|.+.++.|.+.|+++++++++++
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~   35 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDD   35 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCC
Confidence            3799999999999999999999999999998765

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit

Probab=95.36  E-value=0.2  Score=42.38  Aligned_cols=76  Identities=22%  Similarity=0.213  Sum_probs=58.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~   75 (257)
                      ||.|.|. |..|..+-.+|...|++ .++..|+.+- +.+  .|.+...|+.|+-+.  .|+.++++|.....+.  .+.
T Consensus         8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa~~v~~~l~e~~   84 (286)
T TIGR01019         8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPAPFAADAIFEAI   84 (286)
T ss_pred             cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCHHHHHHHHHHHH
Confidence            6889997 99999999999999999 6667776631 111  378888899998876  7999999998876665  444


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      .+|+.
T Consensus        85 ~~Gvk   89 (286)
T TIGR01019        85 DAGIE   89 (286)
T ss_pred             HCCCC
Confidence            45544

ATP citrate lyases appear to form an outgroup.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=95.36  E-value=0.42  Score=40.74  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcccCCHHH-HhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~-~~~~~dvii~~v~~~~~~~~   72 (257)
                      ++.|+|+|.+|...++.+...|.+ |.++++++++++...+..+  . +..+ .-...|++|-|+........
T Consensus       147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i-~~~~~~~~g~Dvvid~~G~~~~~~~  216 (308)
T TIGR01202       147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--L-DPEKDPRRDYRAIYDASGDPSLIDT  216 (308)
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--c-ChhhccCCCCCEEEECCCCHHHHHH
Confidence            578999999999999888888976 6667888777665443321  1 2222 22468999999997654443

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.36  E-value=0.018  Score=51.63  Aligned_cols=34  Identities=38%  Similarity=0.584  Sum_probs=31.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++++|||+|..|.+.|+.|.+.|++|+++.|+.+
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~   40 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDD   40 (448)
T ss_pred             CceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence            3699999999999999999999999999998765

>PRK07877 hypothetical protein; Provisional

Probab=95.35  E-value=0.069  Score=50.79  Aligned_cols=86  Identities=16%  Similarity=0.173  Sum_probs=57.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCc---h---------------hHHHHHH----C--CCcc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTL---S---------------KCDELVA----H--GATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~---~---------------~~~~l~~----~--g~~~--------~   47 (257)
                      ||+|+|+| +|+..+..|++.|.  +++++|.+.   +               |++.+++    .  .+++        .
T Consensus       109 ~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~  187 (722)
T PRK07877        109 RIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTE  187 (722)
T ss_pred             CEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCH
Confidence            79999999 99999999999993  788887642   1               1111111    1  1111        2


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||-|+-+-.....   .....++.++.+...+
T Consensus       188 ~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~  231 (722)
T PRK07877        188 DNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR  231 (722)
T ss_pred             HHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            2566778899999999987644332   4556788888766443

>PRK07060 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.043  Score=44.77  Aligned_cols=40  Identities=25%  Similarity=0.326  Sum_probs=35.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ++.|.|. |.+|..++..|+++|++|++.+|++++.+.+.+
T Consensus        11 ~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~   51 (245)
T PRK07060         11 SVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAG   51 (245)
T ss_pred             EEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5778887 899999999999999999999999887776654

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.34  E-value=0.074  Score=44.73  Aligned_cols=115  Identities=18%  Similarity=0.252  Sum_probs=76.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHH--CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcC
Q 025163            2 EVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKG   78 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~--~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g   78 (257)
                      ++.|||- ..+|.+++..|.+  ++..|+++...              +.++.+.++++|+||.++..+.......-..|
T Consensus       160 ~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~~~ik~G  225 (284)
T PRK14193        160 HVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTADMVKPG  225 (284)
T ss_pred             EEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCHHHcCCC
Confidence            6889986 6789999999998  67889988653              23678889999999999988876665556678


Q ss_pred             CcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           79 GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        79 ~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ..++|..+....    .+.    ..||-+  +.+.+.-+.+.+   .-|.+|.-...-+..|++.
T Consensus       226 avVIDvGin~~~----~gk----l~GDvd--~~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~  277 (284)
T PRK14193        226 AAVLDVGVSRAG----DGK----LVGDVH--PDVWEVAGAVSP---NPGGVGPMTRAFLLTNVVE  277 (284)
T ss_pred             CEEEEccccccC----CCc----EEeecC--HhHHhhCCEEeC---CCCChhHHHHHHHHHHHHH
Confidence            888887765321    122    223333  233333322221   1234666666677777653

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=95.33  E-value=0.19  Score=42.00  Aligned_cols=117  Identities=20%  Similarity=0.294  Sum_probs=78.7

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||-++ +|.+|+..|..+++.|++++...              .++.+..+++|+++.++--+.......-..|..
T Consensus       158 ~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gav  223 (283)
T COG0190         158 NVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIKADMVKPGAV  223 (283)
T ss_pred             EEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccccccccCCCE
Confidence            688999865 79999999999999999997632              367788899999999998877766545556777


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      .+|.++..-..    +.    ..||-+ ++.+++.-+.+..   .-|.+|.-..+-+..|++.+
T Consensus       224 VIDVGinrv~~----~k----l~GDVd-f~~v~~~a~~iTP---VPGGVGPmTvamLl~Nt~~a  275 (283)
T COG0190         224 VIDVGINRVND----GK----LVGDVD-FDSVKEKASAITP---VPGGVGPMTVAMLLENTLKA  275 (283)
T ss_pred             EEecCCccccC----Cc----eEeecc-HHHHHHhhcccCC---CCCccCHHHHHHHHHHHHHH
Confidence            88877654332    21    123322 2334443333322   23456777777777787654

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.31  E-value=0.2  Score=42.48  Aligned_cols=123  Identities=20%  Similarity=0.247  Sum_probs=78.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~   76 (257)
                      ++.|||- ..+|.+++..|.++    +..|+++...              +.++.+.++++|+||.++.-+.......-.
T Consensus       163 ~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~~~~ik  228 (297)
T PRK14168        163 EVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVKPEWIK  228 (297)
T ss_pred             EEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccCHHHcC
Confidence            6889976 67899999999987    6789988643              136778889999999999877766655666


Q ss_pred             cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      .|..++|..+..-......+.  ....||-+ ++.+++.-..+.+   .-|.+|.-...-+..|++.+
T Consensus       229 ~gavVIDvGin~~~~~~~~g~--~~~~GDVd-fe~v~~~a~~iTP---VPGGVGp~T~a~L~~N~~~a  290 (297)
T PRK14168        229 PGATVIDVGVNRVGTNESTGK--AILSGDVD-FDAVKEIAGKITP---VPGGVGPMTIAMLMRNTLKS  290 (297)
T ss_pred             CCCEEEecCCCccCccccCCC--cceecccc-HHHHHhhccEecC---CCCCchHHHHHHHHHHHHHH
Confidence            788888877654211111122  11234433 3444444333322   12446777777777777643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=95.31  E-value=0.03  Score=47.14  Aligned_cols=40  Identities=25%  Similarity=0.380  Sum_probs=34.7

Q ss_pred             EEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         3 I~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      .++|  +.+.+|.++|.-|+++|++|.+..|+++|+++.+++
T Consensus        51 WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE   92 (312)
T KOG1014|consen   51 WAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKE   92 (312)
T ss_pred             EEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence            3455  458999999999999999999999999999988763

>PRK05678 succinyl-CoA synthetase subunit alpha; Validated

Probab=95.30  E-value=0.18  Score=42.76  Aligned_cols=76  Identities=22%  Similarity=0.205  Sum_probs=56.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~~~   75 (257)
                      ||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+++  .|++...++.|+-..  .|+.+++||.....+.  ...
T Consensus        10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~~~v~~~l~e~~   86 (291)
T PRK05678         10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPPPFAADAILEAI   86 (291)
T ss_pred             eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCHHHHHHHHHHHH
Confidence            6889998 88999999999999987 554444431 1111  378888899998876  8999999998876665  444


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      .+|+.
T Consensus        87 ~~gvk   91 (291)
T PRK05678         87 DAGID   91 (291)
T ss_pred             HCCCC
Confidence            45544

>PRK07102 short chain dehydrogenase; Provisional

Probab=95.29  E-value=0.045  Score=44.76  Aligned_cols=39  Identities=13%  Similarity=0.259  Sum_probs=33.5

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|.|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus         3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~   42 (243)
T PRK07102          3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLA   42 (243)
T ss_pred             EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence            577776 599999999999999999999999988766543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=95.28  E-value=0.025  Score=51.20  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=31.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++|+|||+|.-|.+.|..|.+.|++|+++.++.+
T Consensus        11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~   44 (461)
T PLN02172         11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQ   44 (461)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCC
Confidence            3799999999999999999999999999998754

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.24  E-value=0.072  Score=46.78  Aligned_cols=69  Identities=19%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch------------------hHHHHHHC-CCcccCCHHHHhhcCceEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS------------------KCDELVAH-GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~------------------~~~~l~~~-g~~~~~~~~~~~~~~dvii   61 (257)
                      .+|+|-|.|++|..+|+.|.+.|.+|+.++-+..                  +..++.+. |.+..+..+-...+||+++
T Consensus       208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~  287 (411)
T COG0334         208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI  287 (411)
T ss_pred             CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence            4799999999999999999999999988866555                  22233222 4444444322335799888


Q ss_pred             EccCChHH
Q 025163           62 GMLADPAA   69 (257)
Q Consensus        62 ~~v~~~~~   69 (257)
                      -|--....
T Consensus       288 PcA~~n~I  295 (411)
T COG0334         288 PCALENVI  295 (411)
T ss_pred             cccccccc
Confidence            77654433

>TIGR02130 dapB_plant dihydrodipicolinate reductase

Probab=95.24  E-value=0.87  Score=38.15  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=50.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEE--cCCc--hhHHHHHHCCCcc------cCCHHHHhhc-Cc-eEEEccCChH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTL--SKCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~--~r~~--~~~~~l~~~g~~~------~~~~~~~~~~-~d-vii~~v~~~~   68 (257)
                      ||.|.|+ |.||...++...+.++++...  +...  +....+...++.+      ..++.++.+. +| ++|=.+ .+.
T Consensus         2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~   80 (275)
T TIGR02130         2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS   80 (275)
T ss_pred             eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence            7889998 999999999998888887764  4321  1222333335555      6678887766 88 555444 333


Q ss_pred             HHHH---HHHhcCCcEE
Q 025163           69 AALS---AITSKGGHFL   82 (257)
Q Consensus        69 ~~~~---~~~~~g~~~~   82 (257)
                      .+..   .....|+.++
T Consensus        81 ~~~~n~~~~~~~gv~~V   97 (275)
T TIGR02130        81 AVNDNAAFYGKHGIPFV   97 (275)
T ss_pred             HHHHHHHHHHHCCCCEE
Confidence            4333   4445565543

This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=95.24  E-value=1.5  Score=36.44  Aligned_cols=30  Identities=27%  Similarity=0.308  Sum_probs=26.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWN   30 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~   30 (257)
                      .+|.|.|.|++|...++.|.+.|..|+ +.|
T Consensus        39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD   69 (254)
T cd05313          39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSD   69 (254)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            379999999999999999999999987 445

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.21  E-value=0.088  Score=50.75  Aligned_cols=66  Identities=20%  Similarity=0.252  Sum_probs=47.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch----------------h-----HHHHHHCCCcccC--------CHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS----------------K-----CDELVAHGATVGG--------SPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~----------------~-----~~~l~~~g~~~~~--------~~~   51 (257)
                      +||.|||.|.-|...|..|++.|++|+++++.+.                .     .+.+.+.|+....        +++
T Consensus       432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v~~~  511 (752)
T PRK12778        432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTITIE  511 (752)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcCCHH
Confidence            4799999999999999999999999999987431                1     2334445654321        344


Q ss_pred             HHhh-cCceEEEccCC
Q 025163           52 EVIK-KCTITIGMLAD   66 (257)
Q Consensus        52 ~~~~-~~dvii~~v~~   66 (257)
                      +..+ ..|.||+++-.
T Consensus       512 ~l~~~~ydavvlAtGa  527 (752)
T PRK12778        512 ELEEEGFKGIFIASGA  527 (752)
T ss_pred             HHhhcCCCEEEEeCCC
Confidence            4433 48999999865

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=95.21  E-value=0.23  Score=42.61  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=57.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHH----------HHhh-cCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPA----------EVIK-KCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~----------~~~~-~~dvii~~v~~~~~   69 (257)
                      .++|+|+|.+|.+-.+....+|. .|+..|.+++|++..++.|++-.-++.          ++.. .+|..|-|+-....
T Consensus       188 tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~~  267 (366)
T COG1062         188 TVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVEV  267 (366)
T ss_pred             eEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHHH
Confidence            57999999999999999999986 588899999999999998875433332          2223 68999999999887


Q ss_pred             HHH
Q 025163           70 ALS   72 (257)
Q Consensus        70 ~~~   72 (257)
                      .+.
T Consensus       268 ~~~  270 (366)
T COG1062         268 MRQ  270 (366)
T ss_pred             HHH
Confidence            776

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.20  E-value=0.079  Score=44.51  Aligned_cols=115  Identities=19%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||- ..+|.+++..|.++|..|++++...              .++.+..+++|+||.++..+.......-..|..
T Consensus       160 ~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~~~vk~gav  225 (282)
T PRK14180        160 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITADMVKEGAV  225 (282)
T ss_pred             EEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCHHHcCCCcE
Confidence            6889986 6789999999999999999986531              266677899999999999887766555667888


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ++|..+...     .+.    ..||-+ ++.+.+..+.+..   .-|.+|.-...-+..|++.
T Consensus       226 VIDvGin~~-----~gk----l~GDvd-~~~v~~~a~~iTP---VPGGVGp~T~a~L~~Nl~~  275 (282)
T PRK14180        226 VIDVGINHV-----DGK----IVGDVD-FAAVKDKVAAITP---VPGGVGPMTITELLYNTFQ  275 (282)
T ss_pred             EEEeccccc-----CCc----eeCCcC-HHHHHhhccEecc---CCCChhHHHHHHHHHHHHH
Confidence            888776531     122    234432 2344443332221   2344666666777777653

>PRK14852 hypothetical protein; Provisional

Probab=95.20  E-value=0.091  Score=51.25  Aligned_cols=87  Identities=18%  Similarity=0.167  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHH----HHCC--Cc--------cc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDEL----VAHG--AT--------VG   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l----~~~g--~~--------~~   47 (257)
                      ||+|||+|.+|+.++..|+..|. +++++|-+.=                   |++.+    ++.+  ++        ..
T Consensus       334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I~~  413 (989)
T PRK14852        334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGVAA  413 (989)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCCCH
Confidence            79999999999999999999985 5777764421                   12111    1111  11        12


Q ss_pred             CCHHHHhhcCceEEEccCChHH-HHH----HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAA-ALS----AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~-~~~----~~~~~g~~~~~~pv~~   88 (257)
                      .+..+.++++|+||-|+-.... ...    .....++.++.+.+.|
T Consensus       414 en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G  459 (989)
T PRK14852        414 ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLG  459 (989)
T ss_pred             HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccc
Confidence            3566678899999998875322 111    4566788888766544

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=95.19  E-value=0.051  Score=44.91  Aligned_cols=119  Identities=12%  Similarity=0.169  Sum_probs=70.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-------CCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-------GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-------g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ||.|+|.|.+|.+.|..+.-+|.  ++.+.|.++++++    +|+..       .+....|. .+.++++++|+..-..+
T Consensus        22 KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy-~~sa~S~lvIiTAGarq  100 (332)
T KOG1495|consen   22 KITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDY-SVSANSKLVIITAGARQ  100 (332)
T ss_pred             eEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcc-cccCCCcEEEEecCCCC
Confidence            89999999999999999988874  7999999988654    22211       12222233 23468899998875443


Q ss_pred             HH-HH--HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           69 AA-LS--AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        69 ~~-~~--~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                      .. +.  .+.++++..+-.-+ ............++++.+-+....+..-+..+..+
T Consensus       101 ~~gesRL~lvQrNV~ifK~ii-p~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n  156 (332)
T KOG1495|consen  101 SEGESRLDLVQRNVDIFKAII-PALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN  156 (332)
T ss_pred             CCCcHHHHHHHHHHHHHHHHH-HHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc
Confidence            31 11  22333332221110 00111223344577788878777777777777644

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.32  Score=41.25  Aligned_cols=120  Identities=20%  Similarity=0.307  Sum_probs=76.6

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~   76 (257)
                      ++.|||- ..+|.+++..|.++    +..|+++....              .++.+.++++|+||.++.-+.......-.
T Consensus       159 ~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~~~ik  224 (297)
T PRK14167        159 DVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPELIDGSMLS  224 (297)
T ss_pred             EEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCHHHcC
Confidence            6889986 56899999999987    67899885421              36778889999999999877666555566


Q ss_pred             cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHH
Q 025163           77 KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMI  142 (257)
Q Consensus        77 ~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~  142 (257)
                      .|..++|..+..-......|.  - ..||-+ ++.+.+..+.+..   .-|.+|.-...-+..|++
T Consensus       225 ~gaiVIDvGin~~~~~~~~g~--k-l~GDVd-~e~v~~~a~~iTP---VPGGVGpvT~a~L~~N~~  283 (297)
T PRK14167        225 EGATVIDVGINRVDADTEKGY--E-LVGDVE-FESAKEKASAITP---VPGGVGPMTRAMLLYNTV  283 (297)
T ss_pred             CCCEEEEccccccCcccccCC--c-eeecCc-HHHHHhhceEecC---CCCCchHHHHHHHHHHHH
Confidence            788888877654211111121  1 223333 2444444433332   124466666677777765

>PRK06475 salicylate hydroxylase; Provisional

Probab=95.17  E-value=0.026  Score=50.01  Aligned_cols=33  Identities=21%  Similarity=0.406  Sum_probs=31.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||.|||+|..|.++|..|.++|++|+++++.++
T Consensus         4 ~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~   36 (400)
T PRK06475          4 SPLIAGAGVAGLSAALELAARGWAVTIIEKAQE   36 (400)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            799999999999999999999999999998754

>PRK08013 oxidoreductase; Provisional

Probab=95.15  E-value=0.028  Score=49.81  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|..|.++|..|++.|++|+++++.+.
T Consensus         5 dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          5 DVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            699999999999999999999999999998754

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.15  E-value=0.054  Score=44.03  Aligned_cols=38  Identities=24%  Similarity=0.404  Sum_probs=33.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l   39 (257)
                      +|.|.|+ |.+|..+++.|+++|++|++++|++++.+.+
T Consensus         7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~   45 (246)
T PRK05653          7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL   45 (246)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence            5888875 9999999999999999999999998776544

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.13  E-value=0.074  Score=43.75  Aligned_cols=40  Identities=20%  Similarity=0.302  Sum_probs=33.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +|.|.|+ |.+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus         4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~   44 (257)
T PRK09291          4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRA   44 (257)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            5778875 999999999999999999999998877665543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=95.12  E-value=0.028  Score=49.25  Aligned_cols=33  Identities=27%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      .|.|||+|..|..+|..|+++|++|++++|++.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            488999999999999999999999999998864

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=95.11  E-value=0.031  Score=49.41  Aligned_cols=33  Identities=21%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|..|.+.|..|.++|++|+++++.+.
T Consensus         4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            699999999999999999999999999998764

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.09  E-value=0.052  Score=43.79  Aligned_cols=43  Identities=23%  Similarity=0.315  Sum_probs=35.5

Q ss_pred             Ce-EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            1 ME-VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         1 mk-I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      || +-|.| .|.+|..+++.|++.|++|++.+|+++..+++...+
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~~~~   45 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAALQALG   45 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHHhcc
Confidence            54 45555 699999999999999999999999988877776543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
3doj_A	310	Structure Of Glyoxylate Reductase 1 From Arabidopsi		1e-103
3pdu_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		8e-67
3pef_A	287	Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog		1e-66
2uyy_A	316	Structure Of The Cytokine-Like Nuclear Factor N-Pac		5e-59
3cky_A	301	Structural And Kinetic Properties Of A Beta-Hydroxy		4e-27
1vpd_A	299	X-Ray Crystal Structure Of Tartronate Semialdehyde		4e-21
2i9p_A	319	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		2e-16
2gf2_A	296	Crystal Structure Of Human Hydroxyisobutyrate Dehyd		2e-16
1yb4_A	295	Crystal Structure Of The Tartronic Semialdehyde Red		4e-16
4dll_A	320	Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re		8e-16
4gbj_A	297	Crystal Structure Of Nad-Binding 6-Phosphogluconate		2e-13
1wp4_A	289	Structure Of Tt368 Protein From Thermus Thermophilu		9e-10
3qha_A	296	Crystal Structure Of A Putative Oxidoreductase From		4e-09
2cvz_A	289	Structure Of Hydroxyisobutyrate Dehydrogenase From		2e-08
2w8z_A	470	Geobacillus Stearothermophilus 6-Phosphogluconate D		6e-04
2w90_A	471	Geobacillus Stearothermophilus 6-Phosphogluconate D		6e-04
3g0o_A	303	Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge		7e-04
2zyg_A	480	Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenas		7e-04

>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310

Iteration: 1
 Score =  371 bits (953), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 189/285 (66%), Positives = 215/285 (75%), Gaps = 34/285 (11%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DP AALS                                  AIT KGG F+E PV
Sbjct: 82  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLA+KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261
Query: 207 RLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+           RSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306

>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  249 bits (637), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 136/282 (48%), Positives = 168/282 (59%), Gaps = 34/282 (12%)
Query: 4   GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
           GFLGLGIMG  ++ NL+R GF VTVWNR  +KC  LVA GA    SPAEV   C ITI M
Sbjct: 5   GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64  LADPAAAL----------------------------------SAITSKGGHFLEAPVSGS 89
           LADPAAA                                   +A+T++GG FLEAPVSG+
Sbjct: 65  LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 90  KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 149
           K+PAE G L+IL+AG+++L+ +A  A   +GKK   LGEVG GA+MKLVVNMIMG MM  
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTA 184
Query: 150 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
             EG+ L    GLD   LL+VLD G +ANPMFKGKG  +L   +  +FPLKH QKD+RLA
Sbjct: 185 LGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLA 244
Query: 210 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
           + LGD     +             R+ G  D DF+AVF V++
Sbjct: 245 VELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286

>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 132/282 (46%), Positives = 169/282 (59%), Gaps = 34/282 (12%)
Query: 4   GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
           GF+GLGIMG A++ NL++ G  VT+WNR+  K +EL A GA    +P EV++ C +T  M
Sbjct: 5   GFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTFAM 64
Query: 64  LADPAAALS----------------------------------AITSKGGHFLEAPVSGS 89
           LADPAAA                                    A+ +KGG FLEAPVSGS
Sbjct: 65  LADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGS 124
Query: 90  KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 149
           K+PAE G L+IL+AG++ LYDEA+     +GKK   LG+VG GA+MKLVVNM+MG MM  
Sbjct: 125 KKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMAC 184
Query: 150 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
           F EGL L EK+GL    +LDV+  G +ANPMF  KG  +   N+APAFPLKH QKD+RLA
Sbjct: 185 FCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLA 244
Query: 210 LALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVK 251
           +ALGD     +             R+ G GD DFSA+F+  +
Sbjct: 245 VALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286

>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316

Iteration: 1
 Score =  224 bits (570), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 119/281 (42%), Positives = 159/281 (56%), Gaps = 34/281 (12%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT 
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 62  GMLADPAAA----------------------------------LSAITSKGGHFLEAPVS 87
             ++DP AA                                     I S+GG FLEAPVS
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  M
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFM 211
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
            T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+R
Sbjct: 212 ATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLR 271
Query: 208 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFE 248
           LA+ALGD      P+           ++L   DND SAV+ 
Sbjct: 272 LAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312

>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301

Iteration: 1
 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 142/288 (49%), Gaps = 35/288 (12%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVW--------------------NRTLSKCDELV 40
           +++GF+GLG MGK +++NLL+ G  V  +                    N+ ++   +++
Sbjct: 5   IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 41  AHG-------ATVGGSPAEVIKKC---TITIGMLA-DPAAALS---AITSKGGHFLEAPV 86
                      TV   P  V+  C   T+ + M +  P++ L        KG  +++APV
Sbjct: 65  FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG  + AE G L I+    +A++++    L+VIGK  + +G+ G G  +K+V N+++GC 
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCN 184
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVL-DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
           M + +E LVL  K GL P T+ +++    G +  M       ++  ++A  F +  Q KD
Sbjct: 185 MASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244
Query: 206 MRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKDL 253
           + LAL  G E  V +P+           R++GLG  D SAV +V + +
Sbjct: 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM 292

>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 120/279 (43%), Gaps = 34/279 (12%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           +VGF+GLGI GK  S NLL+ G+ + V +R      +++A GA    +   + ++C + I
Sbjct: 7   KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 62  GML-------------------ADPAAAL---------------SAITSKGGHFLEAPVS 87
             L                   A P   L                A+ +KG   L+APVS
Sbjct: 67  TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 88  GSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
           G +  A  G L +   G+KA++D+               G++G G   KL   +I+   +
Sbjct: 127 GGEPKAIDGTLSVXVGGDKAIFDKYYDLXKAXAGSVVHTGDIGAGNVTKLANQVIVALNI 186
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 207
              SE L LA K+G++P  +   +  G   + +   K P +   N+ P F +    KD+ 
Sbjct: 187 AAXSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLA 246
Query: 208 LALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAV 246
            AL         +P+           R+ G G++D SA+
Sbjct: 247 NALDTSHGVGAQLPLTAAVXEXXQALRADGHGNDDHSAL 285

>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 41/293 (13%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 23  MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 82
Query: 61  IGMLA-------------------------------DPAAA---LSAITSKGGHFLEAPV 86
           I ML                                DPA +      +   G  F++APV
Sbjct: 83  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   
Sbjct: 143 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 202
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 199
           M   +E + L  + GLDP+ L  +L++           NP+          +NY   F  
Sbjct: 203 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 262
Query: 200 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 252
               KD+ LA          + +            + G    DFS+VF+ +++
Sbjct: 263 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 315

>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/293 (24%), Positives = 116/293 (39%), Gaps = 41/293 (13%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 1   MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61  IGMLA-------------------------------DPAAA---LSAITSKGGHFLEAPV 86
           I ML                                DPA +      +   G  F++APV
Sbjct: 61  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 199
           M   +E + L  + GLDP+ L  +L++           NP+          +NY   F  
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240
Query: 200 KHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFEVVKD 252
               KD+ LA          + +            + G    DFS+VF+ +++
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293

>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 113/255 (44%), Gaps = 37/255 (14%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTIT 60
           ++GF+GLGI G   ++NL R G ++ V   T+    DEL++ GA    +  +V +   I 
Sbjct: 5   KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 61  IGMLADP-------------------------AAALSAITSK---------GGHFLEAPV 86
              + D                           +++S I +K         G  +L+APV
Sbjct: 63  FIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPV 122
Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG +  A  G L I   GE+ ++D      +++GK    +G  G+G   K+   +I+   
Sbjct: 123 SGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALN 182
Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           +   SE LV A K+G DP  +   L  G  ++ + +  G   +   + P F +   QKD+
Sbjct: 183 IEAVSEALVFASKAGADPVRVRQALXGGFASSRILEVHGERXINRTFEPGFKIALHQKDL 242
Query: 207 RLALALGDENAVSMP 221
            LAL      A+++P
Sbjct: 243 NLALQSAKALALNLP 257

>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 114/282 (40%), Gaps = 40/282 (14%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------- 46
           ++ FLG G  G   +  L   G+ + VWNRT ++   L A GAT+               
Sbjct: 33  KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 47  --------------------GGSPAEV-IKKCTITIGMLADPAAALSAITSKGGHFLEAP 85
                                  P  + +   +IT     D AA L A+   G   L+ P
Sbjct: 93  SXLENGAVVQDVLFAQGVAAAXKPGSLFLDXASITPREARDHAARLGAL---GIAHLDTP 149
Query: 86  VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC 145
           VSG    AE G LVI + G+ A ++ ++  L V G+ A  +G  G+G   KL    I+G 
Sbjct: 150 VSGGTVGAEQGTLVIXAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQXIVGI 208
Query: 146 MMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 205
            +   +E L+ A K G D   + + +  G   + + +  G   ++ ++AP   L  Q KD
Sbjct: 209 TIGAVAEALLFATKGGADXAKVKEAITGGFADSRVLQLHGQRXVERDFAPRARLSIQLKD 268
Query: 206 MRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 247
            R ALA   E     PI              GL D D S +F
Sbjct: 269 XRNALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLF 310

>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 99/243 (40%), Gaps = 34/243 (13%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
           ++ FLGLG +G  I+  LL  G+++ VWNRT SK + L   GATV  +  + I    I  
Sbjct: 7   KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 62  GMLADPAA-----------------------ALSAITSK---------GGHFLEAPVSGS 89
            +LAD AA                        +S  TS+         G H++ AP+   
Sbjct: 67  SVLADDAAVEELFSXELVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPIFAR 126
Query: 90  KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAK-MKLVVNMIMGCMMN 148
            +        I  +G     +     +    K  F  G+    A  +KL  N  + C + 
Sbjct: 127 PEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANVIKLAGNFXIACSLE 186
Query: 149 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKDMR 207
              E    AEK+G+  +++ + L     A P+F+  G  +  + Y P AF      KD+ 
Sbjct: 187 XXGEAFTXAEKNGISRQSIYEXLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDIN 246
Query: 208 LAL 210
           L L
Sbjct: 247 LTL 249

>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 103/256 (40%), Gaps = 41/256 (16%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
           +V F+GLG MG  ++ +L R  F   VWNRT  K    + H    G         + A V
Sbjct: 3   KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54  IKKCTITIGMLADPAAAL-------------------------SAITSKGGHFLEAPVSG 88
           I  C  T   + + A AL                           +  KG  +L+APVSG
Sbjct: 59  IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 118
Query: 89  SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
               AE G L ++  G E+A+  E +       KK   +G VG G  +K + N ++   +
Sbjct: 119 GTSGAEAGTLTVMLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNL 176
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLDL-GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
               EGL+   K G+     L+V++   G +N         +L   +   F L    KD+
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDL 236
Query: 207 RLALALGDENAVSMPI 222
            +A+ + D      P+
Sbjct: 237 GIAMGVLDGEKAPSPL 252

>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296

Iteration: 1
 Score = 58.5 bits (140), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 110/263 (41%), Gaps = 44/263 (16%)
Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++G++GLG MG  ++  +      VTV++  +     L   GAT+  S A+V     I 
Sbjct: 16  LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61  IGMLAD---------------PAAALSA---------------ITSKGGHFLEAPVSGSK 90
           I +L D               P   ++                + ++  H ++APVSG  
Sbjct: 76  ITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGA 135
Query: 91  QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
             A  G+L  +   ++ +Y+    A           GE G G +MKL  NM+        
Sbjct: 136 AAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAA 195
Query: 151 SEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSN----------YAPAFPLK 200
            E + LAE +GLD + L  V+      + +  G G  M++ N          Y P    +
Sbjct: 196 CEAMKLAEAAGLDLQALGRVVRH---TDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTR 252
Query: 201 H-QQKDMRLALALGDENAVSMPI 222
              +KD+ LALALG+  +V +P+
Sbjct: 253 GLGEKDLSLALALGEAVSVDLPL 275

>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 82/205 (40%), Gaps = 40/205 (19%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
           +V F+GLG  G   + +L R  F   VWNRT  K    + H    G         + A V
Sbjct: 3   KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54  IKKCTITIGMLADPAAAL-------------------------SAITSKGGHFLEAPVSG 88
           I  C  T   + + A AL                           +  KG  +L+APVSG
Sbjct: 59  IFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSG 118
Query: 89  SKQPAETGQLVILSAG-EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM 147
               AE G L +   G E+A+  E +       KK   +G VG G  +K + N ++   +
Sbjct: 119 GTSGAEAGTLTVXLGGPEEAV--ERVRPFLAYAKKVVHVGPVGAGHAVKAINNALLAVNL 176
Query: 148 NTFSEGLVLAEKSGLDPRTLLDVLD 172
               EGL+   K G+     L+V++
Sbjct: 177 WAAGEGLLALVKQGVSAEKALEVIN 201

>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATV------------- 46
           ++G +GL +MGK +++N+   G+ V V+NR   K DE +  A G  +             
Sbjct: 6   QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 65
Query: 47  -----------GGSPAEV--------IKKCTITIG----MLADPAAALSAITSKGGHFLE 83
                       G+P +         ++K  I I        D       +   G HF+ 
Sbjct: 66  EKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIG 125
Query: 84  APVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEVGNGAKMK 136
             VSG ++ A  G   I+  G+K  ++      EAI+A  V G+    ++G  G G  +K
Sbjct: 126 TGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPDGAGHYVK 183
Query: 137 LVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 171
           +V N I    M   +E   L +   G+D   L +V 
Sbjct: 184 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 219

>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 88/216 (40%), Gaps = 48/216 (22%)
Query: 2   EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATV------------- 46
           ++G +GL +MGK +++N+   G+ V V+NR   K DE +  A G  +             
Sbjct: 7   QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYSIEEFVNAL 66
Query: 47  -----------GGSPAEV--------IKKCTITIG----MLADPAAALSAITSKGGHFLE 83
                       G+P +         ++K  I I        D       +   G HF+ 
Sbjct: 67  EKPRKILLMVKAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAELGIHFIG 126
Query: 84  APVSGSKQPAETGQLVILSAGEKALYD------EAISALNVIGKK-AFFLGEVGNGAKMK 136
             VSG ++ A  G   I+  G+K  ++      EAI+A  V G+    ++G  G G  +K
Sbjct: 127 TGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEAIAA-KVDGEPCTTYIGPDGAGHYVK 184
Query: 137 LVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVL 171
           +V N I    M   +E   L +   G+D   L +V 
Sbjct: 185 MVHNGIEYGDMQLIAEAYFLLKHVLGMDAAELHEVF 220

>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/186 (20%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 65  ADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF 124
           AD     +A+T+   + L+APVSG    A  G+  + ++G +A +      L+ +    +
Sbjct: 107 ADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXASGSEAAFTRLKPVLDAVASNVY 166
Query: 125 FLGEV-GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG 183
            + +  G G+ +K++  ++ G  +   +E   LA ++G+      DV+      +  F+ 
Sbjct: 167 RISDTPGAGSTVKIIHQLLAGVHIAAAAEAXALAARAGIPLDVXYDVVTHAAGNSWXFEN 226
Query: 184 KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDF 243
           +   ++  +Y P   +    KD+ L           +P+            + G G  D 
Sbjct: 227 RXQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNXFTSASNAGYGKEDD 286
Query: 244 SAVFEV 249
           SAV ++
Sbjct: 287 SAVIKI 292

>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase Length = 480

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 30/42 (71%)
Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
           ++G +G+ +MG+ +++N+   G+ V+V+NR+  K +E++A 
Sbjct: 16 QQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAE 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	3e-96
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	4e-96
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	2e-95
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	2e-94
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	4e-87
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	2e-66
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	2e-64
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	2e-64
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	2e-62
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	1e-60
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	2e-59
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	2e-59
3qha_A	296	Putative oxidoreductase; seattle structural genomi	1e-52
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	6e-50
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	1e-42
4ezb_A	317	Uncharacterized conserved protein; structural geno	9e-29
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	5e-26
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	1e-11
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	7e-11
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	8e-11
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	3e-10
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	8e-10
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	9e-10
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	1e-09
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	1e-09
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	1e-09
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	2e-07
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	1e-06
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	1e-05
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	4e-05
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	6e-05
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	1e-04
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	1e-04
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	9e-04

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310

 Score =  283 bits (727), Expect = 3e-96
 Identities = 200/285 (70%), Positives = 226/285 (79%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V  SPAEVIKKC  T
Sbjct: 22  MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
           I ML+DP AALS                                  AIT KGG F+E PV
Sbjct: 82  IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE GQL+IL+AG+KAL++E+I A +V+GK++F+LG+VGNGAKMKL+VNMIMG M
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSM 201

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           MN FSEGLVLA+KSGL   TLLD+LDLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDM
Sbjct: 202 MNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM 261

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLALALGDENAVSMP+AAAANEAFKKARSLGLGD DFSAV E VK
Sbjct: 262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVK 306

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316

 Score =  283 bits (726), Expect = 4e-96
 Identities = 127/283 (44%), Positives = 169/283 (59%), Gaps = 34/283 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            ++GFLGLG+MG  I  NLL+ G  VTVWNRT  KCD  +  GA +G +PAEV+  C IT
Sbjct: 31  KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDIT 90

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
              ++DP AA                                     I S+GG FLEAPV
Sbjct: 91  FACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPV 150

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG++Q +  G LVIL+AG++ LY++  S    +GK +FFLGEVGN AKM L+VNM+ G  
Sbjct: 151 SGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSF 210

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           M T +EGL LA+ +G   +TLLD+L+ G +A+     K   +LQ N+ P F LK+ QKD+
Sbjct: 211 MATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDL 270

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 249
           RLA+ALGD      P+AAAANE +K+A++L   DND SAV+  
Sbjct: 271 RLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRA 313

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287

 Score =  280 bits (719), Expect = 2e-95
 Identities = 140/285 (49%), Positives = 179/285 (62%), Gaps = 34/285 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            + GF+GLGIMG A++ NL++ G  VT+WNR+  K +EL A GA    +P EV++ C +T
Sbjct: 2   QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVT 61

Query: 61  IGMLADPAAALS----------------------------------AITSKGGHFLEAPV 86
             MLADPAAA                                    A+ +KGG FLEAPV
Sbjct: 62  FAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPV 121

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SGSK+PAE G L+IL+AG++ LYDEA+     +GKK   LG+VG GA+MKLVVNM+MG M
Sbjct: 122 SGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGM 181

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           M  F EGL L EK+GL    +LDV+  G +ANPMF  KG  +   N+APAFPLKH QKD+
Sbjct: 182 MACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL 241

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           RLA+ALGD     +  +AAANE FK AR+ G GD DFSA+F+  +
Sbjct: 242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE 286

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287

 Score =  277 bits (712), Expect = 2e-94
 Identities = 144/283 (50%), Positives = 177/283 (62%), Gaps = 34/283 (12%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
            GFLGLGIMG  ++ NL+R GF VTVWNR  +KC  LVA GA    SPAEV   C ITI 
Sbjct: 4   YGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIA 63

Query: 63  MLADPAAALS----------------------------------AITSKGGHFLEAPVSG 88
           MLADPAAA                                    A+T++GG FLEAPVSG
Sbjct: 64  MLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSG 123

Query: 89  SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 148
           +K+PAE G L+IL+AG+++L+ +A  A   +GKK   LGEVG GA+MKLVVNMIMG MM 
Sbjct: 124 TKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMT 183

Query: 149 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRL 208
              EG+ L    GLD   LL+VLD G +ANPMFKGKG  +L   +  +FPLKH QKD+RL
Sbjct: 184 ALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRL 243

Query: 209 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 251
           A+ LGD     +  AA ANE+FK+AR+ G  D DF+AVF V++
Sbjct: 244 AVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306

 Score =  260 bits (666), Expect = 4e-87
 Identities = 50/292 (17%), Positives = 95/292 (32%), Gaps = 36/292 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            +V  +GLG MG  ++  LL+ G +V +WNR+  K   LVA GA +  S    +     T
Sbjct: 10  FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPAT 69

Query: 61  IGMLADPAAALS--------------------------------AITSKGGHFLEAPVSG 88
           I +L D  A                                    +   GGH+++  +  
Sbjct: 70  IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVA 129

Query: 89  SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN 148
             +     +   +  G++  +++  + L  +     FL           V++      M 
Sbjct: 130 YPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAAMV 188

Query: 149 TFSEGLVLAEKSGLDPRTLLDVLDLGG--IANPMFKGKGPTMLQSNY-APAFPLKHQQKD 205
           TF E +   ++ GL       +L            +     +   ++      L      
Sbjct: 189 TFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADA 248

Query: 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRSS 257
                       V  P+  A  +  ++A ++G GD D +A  +     +   
Sbjct: 249 FAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQEEG 300

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299

 Score =  207 bits (529), Expect = 2e-66
 Identities = 78/287 (27%), Positives = 131/287 (45%), Gaps = 34/287 (11%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + 
Sbjct: 6   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 65

Query: 61  IGMLADP-----------------------------AAALS-----AITSKGGHFLEAPV 86
           I ML +                              A   S     A+ +KG   L+APV
Sbjct: 66  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 125

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG +  A  G L ++  G+KA++D+    +  +       G++G G   KL   +I+   
Sbjct: 126 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALN 185

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           +   SE L LA K+G++P  +   +  G   + +   K P ++  N+ P F +    KD+
Sbjct: 186 IAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 245

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
             AL         +P+ AA  E  +  R+ G G++D SA+    + L
Sbjct: 246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKL 292

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295

 Score =  201 bits (515), Expect = 2e-64
 Identities = 74/287 (25%), Positives = 126/287 (43%), Gaps = 35/287 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M++GF+GLGIMG  +++NL R G ++ V        DEL++ GA    +  +V +   I 
Sbjct: 4   MKLGFIGLGIMGSPMAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADII 62

Query: 61  IGMLADP-----------------------------AAALS-----AITSKGGHFLEAPV 86
             M+ D                              +   +      +   G  +L+APV
Sbjct: 63  FIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPV 122

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG +  A  G L I+  GE+ ++D      +++GK    +G  G+G   K+   +I+   
Sbjct: 123 SGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALN 182

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 206
           +   SE LV A K+G DP  +   L  G  ++ + +  G  M+   + P F +   QKD+
Sbjct: 183 IEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL 242

Query: 207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
            LAL      A+++P  A   E F    + G    D SA+ + ++ +
Sbjct: 243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELM 289

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320

 Score =  202 bits (517), Expect = 2e-64
 Identities = 76/284 (26%), Positives = 120/284 (42%), Gaps = 34/284 (11%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + FLG G MG  ++  L   G+ + VWNRT ++   L A GAT+        +   I + 
Sbjct: 34  ITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVS 93

Query: 63  MLADP----------------------------AAALS-----AITSKGGHFLEAPVSGS 89
           ML +                                 +      + + G   L+ PVSG 
Sbjct: 94  MLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGG 153

Query: 90  KQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNT 149
              AE G LVI++ G+ A ++ ++  L V G+ A  +G  G+G   KL   MI+G  +  
Sbjct: 154 TVGAEQGTLVIMAGGKPADFERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGA 212

Query: 150 FSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
            +E L+ A K G D   + + +  G   + + +  G  M++ ++AP   L  Q KDMR A
Sbjct: 213 VAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNA 272

Query: 210 LALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
           LA   E     PI     + + +    GL D D S +F  +   
Sbjct: 273 LATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301

 Score =  197 bits (503), Expect = 2e-62
 Identities = 83/288 (28%), Positives = 141/288 (48%), Gaps = 35/288 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++GF+GLG MGK +++NLL+ G  V  ++   +    +VA GA    +  +V     I 
Sbjct: 5   IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64

Query: 61  IGML-------------------------------ADPAAAL---SAITSKGGHFLEAPV 86
              L                                 P++ L        KG  +++APV
Sbjct: 65  FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG  + AE G L I+    +A++++    L+VIGK  + +G+ G G  +K+V N+++GC 
Sbjct: 125 SGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCN 184

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKD 205
           M + +E LVL  K GL P T+ +++      +   + K    ++  ++A  F +  Q KD
Sbjct: 185 MASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD 244

Query: 206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
           + LAL  G E  V +P+ A A + F+  R++GLG  D SAV +V + +
Sbjct: 245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQM 292

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296

 Score =  192 bits (490), Expect = 1e-60
 Identities = 73/293 (24%), Positives = 122/293 (41%), Gaps = 41/293 (13%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M VGF+GLG MG  ++ NL+++G+ + +++     C E    G  V  SPA+V +K    
Sbjct: 1   MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60

Query: 61  IGML-------------------------------ADPAAALS---AITSKGGHFLEAPV 86
           I ML                                DPA +      +   G  F++APV
Sbjct: 61  ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCM 146
           SG    A +G L  +  G +  +  A   L  +G    + G VG G   K+  NM++   
Sbjct: 121 SGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAIS 180

Query: 147 MNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMFKGKGPTMLQSNYAPAFPL 199
           M   +E + L  + GLDP+ L  +L++           NP+          +NY   F  
Sbjct: 181 MIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT 240

Query: 200 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 252
               KD+ LA          + + + A++ ++   + G    DFS+VF+ +++
Sbjct: 241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLRE 293

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303

 Score =  189 bits (482), Expect = 2e-59
 Identities = 60/289 (20%), Positives = 113/289 (39%), Gaps = 36/289 (12%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTI 59
             VG +GLG MG   + + LR G      +     C  L+A GA     S  E       
Sbjct: 8   FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDA 67

Query: 60  TIGML-------------------------------ADPAAALS---AITSKGGHFLEAP 85
            + ++                                  A A     A+T+   + L+AP
Sbjct: 68  LVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAP 127

Query: 86  VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV-GNGAKMKLVVNMIMG 144
           VSG    A  G++ ++++G +A +      L+ +    + + +  G G+ +K++  ++ G
Sbjct: 128 VSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAG 187

Query: 145 CMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK 204
             +   +E + LA ++G+    + DV+      + MF+ +   ++  +Y P   +    K
Sbjct: 188 VHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVK 247

Query: 205 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
           D+ L           +P+A+ A   F  A + G G  D SAV ++    
Sbjct: 248 DLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296

 Score =  172 bits (437), Expect = 1e-52
 Identities = 68/280 (24%), Positives = 112/280 (40%), Gaps = 38/280 (13%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +++G++GLG MG  ++  +      VTV++  +     L   GAT+  S A+V     I 
Sbjct: 16  LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75

Query: 61  IGML---------------------------ADPAAAL---SAITSKGGHFLEAPVSGSK 90
           I +L                                A+     + ++  H ++APVSG  
Sbjct: 76  ITVLDDAQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGA 135

Query: 91  QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
             A  G+L  +   ++ +Y+    A           GE G G +MKL  NM+        
Sbjct: 136 AAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAA 195

Query: 151 SEGLVLAEKSGLDPRTLLDVL-----DLGGIANPMFKGKGPTMLQSN--YAPAFPLKH-Q 202
            E + LAE +GLD + L  V+       GG    M +     +   N  Y P    +   
Sbjct: 196 CEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLG 255

Query: 203 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDND 242
           +KD+ LALALG+  +V +P+A  A E       +   + +
Sbjct: 256 EKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEKE 295

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289

 Score =  164 bits (418), Expect = 6e-50
 Identities = 62/284 (21%), Positives = 102/284 (35%), Gaps = 37/284 (13%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           V F+GLG MG  ++ +L R      VWNRT  K         +    P E + +  +   
Sbjct: 4   VAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEA-VPLERVAEARVIFT 61

Query: 63  ML----------------------------ADPAAAL---SAITSKGGHFLEAPVSGSKQ 91
            L                             +P A+      +  KG  +L+APVSG   
Sbjct: 62  CLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTS 121

Query: 92  PAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFS 151
            AE G L ++  G +   +     L    KK   +G VG G  +K + N ++   +    
Sbjct: 122 GAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAG 180

Query: 152 EGLVLAEKSGLDPRTLLDVLDLGGIAN--PMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA 209
           EGL+   K G+     L+V+                  +L   +   F L    KD+ +A
Sbjct: 181 EGLLALVKQGVSAEKALEVI-NASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIA 239

Query: 210 LALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 253
           + + D      P+   A E ++ A+     D D      +++  
Sbjct: 240 MGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERW 283

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312

 Score =  146 bits (370), Expect = 1e-42
 Identities = 45/284 (15%), Positives = 87/284 (30%), Gaps = 44/284 (15%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVA--HGATVGGSPAEVIKKC 57
           M++GF+G G    AI+  L + G   +  ++   ++     A   G +   S AEV  +C
Sbjct: 25  MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGEC 84

Query: 58  TITIGMLADPA--------------------------------AALSAITSKGGHFLEAP 85
            +   ++   A                                  + +       +    
Sbjct: 85  DVIFSLVTAQAALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVA 144

Query: 86  VSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMIMG 144
           V  + +P      +++       +  A     + G +   L GEVG  A +K+  + ++ 
Sbjct: 145 VMSAVKPHGHRVPLVVDGDGARRFQAA---FTLYGCRIEVLDGEVGGAALLKMCRSAVLK 201

Query: 145 CMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK 204
            +   F E L  AEK GL  R L  +           +     +++ N   A    H   
Sbjct: 202 GLEALFLEALAAAEKMGLADRVLASL--DASFPEHHLRDLALYLVERNLEHADRRAH--- 256

Query: 205 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFE 248
           ++    A      V   +A A      +   +            
Sbjct: 257 ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVR 300

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317

 Score =  110 bits (275), Expect = 9e-29
 Identities = 43/301 (14%), Positives = 92/301 (30%), Gaps = 52/301 (17%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD------ELVAHGATVGGSPAEV 53
             + F+G G   ++I+  L      ++  ++   +            A            
Sbjct: 25  TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAG 84

Query: 54  IKKCTITIGML---------------------------ADPAAAL---SAITSKGGHFLE 83
           I    + + ++                             P        AI +  G F+E
Sbjct: 85  IACADVVLSLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE 144

Query: 84  APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL-GEVGNGAKMKLVVNMI 142
             V     P      ++++        E    LN +G     +    G  + +K++ +++
Sbjct: 145 GAVMARVPPYAEKVPILVAGRRAV---EVAERLNALGMNLEAVGETPGQASSLKMIRSVM 201

Query: 143 MGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQ 202
           +  +     E L  AE++G+  R L  V +        ++      L   +        +
Sbjct: 202 IKGVEALLIEALSSAERAGVTERILDSVQE--TFPGLDWRDVADYYLSRTFEHGAR---R 256

Query: 203 QKDMRLALALGDENAVSMPIAAAANEAFK------KARSLGLGDNDFSAVFEVVKDLKRS 256
             +M  A    +   ++ P++ AA E         K + L + D     V  + + L R 
Sbjct: 257 VTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRLARD 316

Query: 257 S 257
           S
Sbjct: 317 S 317

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264

 Score =  101 bits (253), Expect = 5e-26
 Identities = 38/199 (19%), Positives = 71/199 (35%), Gaps = 32/199 (16%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + VGF+G G + + ++  L   G +V       S      A    V  +  E +  C + 
Sbjct: 1   LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 61  IGMLADPAAALSAITS--------------------------KGGHFLEAPVSGSKQPAE 94
           I  +    A  +A  +                          + G F++A + GS +   
Sbjct: 61  ISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRRKG 120

Query: 95  TGQLVILSAGEKALYDEAISALNVIGKKAFFLG-EVGNGAKMKLVVNMIMGCMMNTFSEG 153
               +I S  +     E    LN  G      G E G+ + +K++ +     +     E 
Sbjct: 121 ADIRIIASGRD----AEEFMKLNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWET 176

Query: 154 LVLAEKSGLDPRTLLDVLD 172
           L  A + GL+   +L++L+
Sbjct: 177 LTAAHRLGLEED-VLEMLE 194

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} Length = 266

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 30/213 (14%), Positives = 56/213 (26%), Gaps = 32/213 (15%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCT 58
             +  +G G +   ++  L R GF++  V++RT     EL     A      AEV     
Sbjct: 11  TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAK 70

Query: 59  ITIGMLADPAAA----------------LSAITSKGGHFLE------------APVSGSK 90
           + I  L D A A                +    S   +  E               S  +
Sbjct: 71  LYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTFSKQR 130

Query: 91  QPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF 150
           +         + A          +  + +  + +          + L          + +
Sbjct: 131 EVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADS-EQRKSLHLAAVFTCNFTNHMY 189

Query: 151 SEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKG 183
           +    L +K  L    +L  L            
Sbjct: 190 ALAAELLKKYNLPFDVMLP-LIDETARKVHELE 221

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358

 Score = 60.4 bits (147), Expect = 7e-11
 Identities = 15/56 (26%), Positives = 25/56 (44%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK 56
          M++G +GLG MG  +   L + G +  V++  ++    L   G     S  E   K
Sbjct: 23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAK 78

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215

 Score = 59.2 bits (143), Expect = 8e-11
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           +VG LG G   ++++  L+ +GFKV V +R   +   L    A V     E +    + 
Sbjct: 29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQV-TFQEEAVSSPEVI 87

Query: 61 IGMLADPAAA 70
             +     +
Sbjct: 88 FVAVFREHYS 97

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP 50
          M+VG +GLG+MG  +++N+   GFKV V+NRT SK +E +   A+   + 
Sbjct: 2  MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAG 51

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474

 Score = 57.6 bits (140), Expect = 8e-10
 Identities = 14/54 (25%), Positives = 29/54 (53%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK 55
            G +G+ +MGK +++N+   G+ V ++NRT SK +E+            + ++
Sbjct: 7  NFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLE 60

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 14/54 (25%), Positives = 33/54 (61%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK 55
          ++G +G+ +MG+ +++N+   G+ V+++NR+  K +E++A        P   +K
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVK 70

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 Length = 276

 Score = 56.8 bits (136), Expect = 1e-09
 Identities = 20/190 (10%), Positives = 50/190 (26%), Gaps = 27/190 (14%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
           + + F+G G + +   +  L++ +++  + +R++ +   L         +  +  +   +
Sbjct: 3   LVLNFVGTGTLTRFF-LECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGV 61

Query: 60  TIGMLADPAAA------------------------LSAITSKGGHFLEAPVSGSKQPAET 95
              ++ D                                     H   +  S  K     
Sbjct: 62  VFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMK 121

Query: 96  GQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLV 155
            Q+V    G++            I  K F +          L   +     +        
Sbjct: 122 DQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS-EKKKAYHLAAVIASNFPVALAYLSKR 180

Query: 156 LAEKSGLDPR 165
           +    GLD  
Sbjct: 181 IYTLLGLDEP 190

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          + G +GL +MG+ + +N   +GF V  +NRT SK D  +A
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLA 51

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 15/40 (37%), Positives = 28/40 (70%)

Query: 2  EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41
          ++  +GL +MG+ + +N+  +GF V  +NRT+SK D+ +A
Sbjct: 4  DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLA 43

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
            V   G G  GK++ + +L+ G+ V   +R       L+  GA V    +E   +  + 
Sbjct: 20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVS-SLLPRGAEV-LCYSEAASRSDVI 77

Query: 61 IGMLADPAAA 70
          +  +      
Sbjct: 78 VLAVHREHYD 87

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} Length = 245

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 13/74 (17%), Positives = 27/74 (36%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
          M++  LG G +G+ ++  L   G +VT+  R            A      ++ + +    
Sbjct: 20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV 79

Query: 61 IGMLADPAAALSAI 74
                  AA + +
Sbjct: 80 HLAAFADVAAGAEL 93

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A Length = 259

 Score = 44.8 bits (107), Expect = 1e-05
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTI 59
          M++G +G+G M  AI   L +   ++ +   +L +  E+          S  ++I +  +
Sbjct: 4  MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDL 63

Query: 60 TI 61
           I
Sbjct: 64 VI 65

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A Length = 450

 Score = 43.4 bits (101), Expect = 4e-05
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 9/68 (13%)

Query: 6  LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV---------IKK 56
          LG G + +     L  +G KVTV  RTL    +L A          +V         + K
Sbjct: 9  LGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAK 68

Query: 57 CTITIGML 64
            + I ++
Sbjct: 69 HDLVISLI 76

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 42.4 bits (99), Expect = 6e-05
 Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 3  VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
          V  LG  G MG  I+  +  +   +          D L   G  +       I +  + +
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPL-TDGDGWIDEADVVV 72

Query: 62 GMLADPAAA 70
            L D    
Sbjct: 73 LALPDNIIE 81

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* Length = 212

 Score = 41.4 bits (96), Expect = 1e-04
 Identities = 34/192 (17%), Positives = 59/192 (30%), Gaps = 22/192 (11%)

Query: 1   MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTI 59
           M V  LG  G +GK +++ L   G ++ V +R   K +   A    + G  +        
Sbjct: 1   MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDAS-------- 52

Query: 60  TIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVI 119
             GM  + AA    I      +  A  +         + +++S              +  
Sbjct: 53  ITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREKIVVSPLVPVSRGAKGFTYSSE 112

Query: 120 GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTL----------- 167
              A  + EV    K+   ++ I         E         G D  +            
Sbjct: 113 RSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISEID 172

Query: 168 -LDVLDLGGIAN 178
            L  LD G ++N
Sbjct: 173 GLRPLDAGPLSN 184

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 6   LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTI----- 59
           LG G   +A+   L++ G KV +WNRT  K  +L       V  SP EVI K  +     
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTT 194

Query: 60  TIGM 63
           ++G+
Sbjct: 195 SVGL 198

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 6   LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA 65
           +G G  GKA++      G KV + NRT  +  EL           AE I    +++  L 
Sbjct: 370 IGAGGAGKALAYGAKEKGAKVVIANRTYERALEL-----------AEAIGGKALSLTDLD 418

Query: 66  DPAAALSAI----TSKG--GHFLEAPVSGSKQPAET 95
           +       +    TS G   +  E P+S        
Sbjct: 419 NYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYA 454

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	100.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	100.0
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	100.0
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	100.0
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	100.0
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	100.0
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	100.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	100.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	100.0
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	100.0
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	100.0
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	100.0
4ezb_A	317	Uncharacterized conserved protein; structural geno	100.0
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	100.0
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	100.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	100.0
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	100.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	100.0
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.98
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.97
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.97
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	99.97
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	99.97
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.97
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	99.97
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	99.96
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	99.96
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.95
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	99.95
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	99.95
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.95
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	99.95
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	99.94
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.92
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.91
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.91
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	99.91
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.9
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.9
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.89
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.88
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.88
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.87
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.87
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.87
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.86
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.86
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.85
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.83
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.82
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.82
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.81
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.81
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.81
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.8
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.8
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.78
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.78
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.78
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.77
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.76
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.76
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.73
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.73
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.72
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.72
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.71
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.69
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.69
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.69
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	99.51
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.68
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.66
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.66
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.63
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.61
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.61
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.59
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.55
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.53
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.5
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.49
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.47
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.3
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	99.25
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.23
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.1
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.03
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.01
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.01
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	98.99
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	98.98
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.97
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.96
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.94
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.94
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.94
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.94
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.93
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	98.93
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.93
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.92
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.92
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.92
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.91
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.91
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.9
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.89
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.88
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.87
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.87
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.86
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.85
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.85
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.82
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.82
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.82
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.81
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.8
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.8
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.79
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.79
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.79
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.78
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.78
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.78
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.77
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.77
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.77
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.77
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.76
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.76
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.76
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.75
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.75
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.74
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.74
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.74
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.74
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.73
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	98.73
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.73
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.71
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.7
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.7
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	98.68
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.67
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.67
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.66
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.66
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.66
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.65
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	98.64
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.64
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.64
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.64
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.63
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.62
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	98.62
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.61
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.61
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.61
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.61
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.6
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.6
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.59
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.57
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	98.56
4had_A	350	Probable oxidoreductase protein; structural genomi	98.56
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.55
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.53
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.5
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.49
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.47
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	98.46
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.46
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.46
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.46
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.46
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	98.46
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.44
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	98.44
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.44
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.44
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.43
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.42
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.42
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	98.42
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	98.41
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	98.41
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	98.41
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.41
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.41
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	98.41
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.41
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.41
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.4
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.38
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	98.37
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	98.37
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	98.37
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.37
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.37
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.37
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.36
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.36
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	98.33
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.31
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.31
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.3
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	98.3
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	98.3
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	98.3
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.28
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	98.28
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.27
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.25
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.25
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.25
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	98.24
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.24
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	98.22
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.22
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	98.22
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.22
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.21
4h3v_A	390	Oxidoreductase domain protein; structural genomics	98.2
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	98.2
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	98.2
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.2
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.2
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	98.19
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.18
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.18
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.18
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.18
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.18
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	98.17
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	98.17
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	98.17
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.17
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	98.16
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	98.16
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.15
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.15
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.15
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	98.12
4g65_A	461	TRK system potassium uptake protein TRKA; structur	98.12
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.1
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	98.1
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	98.08
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	98.08
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.08
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	98.07
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	98.07
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.06
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	98.05
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.04
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	98.04
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.04
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.04
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	98.03
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.03
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	98.03
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.02
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	98.01
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.98
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.97
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.93
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.93
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.93
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.91
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.9
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.87
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.87
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.86
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.85
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.84
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.84
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.82
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	97.82
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.82
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	97.76
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.74
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	97.72
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.72
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.71
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.69
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	97.69
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.69
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.68
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	97.64
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	97.64
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	97.62
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.62
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.6
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	97.59
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	97.58
1lnq_A	336	MTHK channels, potassium channel related protein;	97.58
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	97.58
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.57
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	97.57
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	97.55
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.53
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	97.53
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.51
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	97.47
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	97.46
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	97.41
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	97.41
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.4
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.4
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	97.39
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	97.38
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	97.37
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	97.37
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	97.35
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.35
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	97.35
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	97.35
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	97.34
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.34
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	97.34
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	97.34
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	97.33
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.31
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.29
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.28
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.28
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	97.27
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.25
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	97.24
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.22
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	97.2
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.19
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	97.19
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.18
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.18
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	97.18
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	97.17
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	97.17
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	97.15
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	97.15
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.14
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	97.14
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	97.13
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.13
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.12
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.08
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	97.04
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	97.04
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	97.04
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	97.03
1xq6_A	253	Unknown protein; structural genomics, protein stru	97.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.02
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.0
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.0
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.99
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	96.97
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.97
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.95
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	96.94
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.92
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.92
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	96.92
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	96.91
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.9
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.9
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.89
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.89
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	96.88
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	96.88
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	96.84
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.8
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	96.78
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.77
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.77
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.76
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	96.76
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	96.75
1vm6_A	228	DHPR, dihydrodipicolinate reductase; TM1520, struc	96.74
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	96.73
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	96.72
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	96.72
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.72
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	96.71
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.7
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	96.7
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.68
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.62
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	96.62
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	96.61
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	96.59
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	96.58
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.58
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	96.58
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	96.58
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.58
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.56
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.55
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.55
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.55
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	96.52
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.49
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.48
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.47
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	96.47
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.46
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	96.43
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	96.43
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.42
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	96.42
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	96.39
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	96.39
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	96.39
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.38
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.37
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	96.37
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.36
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.35
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	96.35
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	96.34
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	96.34
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	96.32
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.3
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	96.28
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	96.28
1y8q_B	640	Anthracycline-, ubiquitin-like 2 activating enzyme	96.27
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	96.25
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	96.24
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	96.24
3hsk_A	381	Aspartate-semialdehyde dehydrogenase; candida albi	96.23
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.22
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	96.21
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	96.21
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.21
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	96.2
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.19
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.19
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.16
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.14
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.14
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.14
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	96.13
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	96.13
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	96.11
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	96.09
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.09
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	96.09
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	96.09
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.06
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	96.06
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.05
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.05
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	96.05
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.03
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	96.02
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	96.01
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.0
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	96.0
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	95.99
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	95.98
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.97
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	95.97
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.95
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.94
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	95.94
1tt5_A	531	APPBP1, amyloid protein-binding protein 1; cell cy	95.93
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	95.93
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	95.92
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	95.91
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	95.91
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.9
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	95.9
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	95.9
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.89
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.89
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.88
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	95.87
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.85
1j6u_A	469	UDP-N-acetylmuramate-alanine ligase MURC; structur	95.85
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	95.84
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	95.84
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	95.82
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	95.82
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	95.79
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	95.79
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	95.78
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.78
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	95.77
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	95.77
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	95.77
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	95.77

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=9.1e-53  Score=355.32  Aligned_cols=254  Identities=26%  Similarity=0.437  Sum_probs=243.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---------   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---------   72 (257)
                      ||||||+|.||.+||++|.++||+|++|||++++.+.+.+.|++.+.|+.|+++++|+||+|+|++.+++.         
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~   84 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLL   84 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSST
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999998876         


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeC
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                                               .+..+|+.|+|+||+|++..+..|++.+++||+++.+++++|+|+.++.+++|+|
T Consensus        85 ~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~G  164 (300)
T 3obb_A           85 AHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG  164 (300)
T ss_dssp             TSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEeC
Confidence                                     6677899999999999999999999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-------cccCCCCCCCcccc
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-------TMLQSNYAPAFPLK  200 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~  200 (257)
                      +.|.++.+|+++|.+.+.++.++.|++.++++.|+|++.+.++++.+++.++.++.+.+       .+..++|.++|+++
T Consensus       165 ~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~  244 (300)
T 3obb_A          165 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ  244 (300)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHH
Confidence            99999999999999999999999999999999999999999999999999999887655       45678899999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          201 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      .+.||++++.+++++.|+|+|+.+.+.++|+.+.++|++++||++|+++|++..+
T Consensus       245 l~~KDl~l~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~~G  299 (300)
T 3obb_A          245 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPTQG  299 (300)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTTC-
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999987654

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=7.1e-52  Score=349.92  Aligned_cols=253  Identities=27%  Similarity=0.437  Sum_probs=237.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---------   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---------   72 (257)
                      ||||||+|.||.+||.+|+++||+|++|||++++.+++.+.|+..+.|+.|+++++|+||+|+|++...+.         
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~   86 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVEK   86 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHH
T ss_pred             cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHhh
Confidence            79999999999999999999999999999999999999999999999999999999999999999887665         


Q ss_pred             -----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-
Q 025163           73 -----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-  128 (257)
Q Consensus        73 -----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-  128 (257)
                                             .+..+|+.|+|+|+++++..+..+++.++++|+++.+++++++|+.++.+++++|+ 
T Consensus        87 ~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g~~  166 (297)
T 4gbj_A           87 LGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDD  166 (297)
T ss_dssp             HCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEECCSC
T ss_pred             cCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEecCC
Confidence                                   66678999999999999999999999999999999999999999999999999995 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCC-CcccchHHHHHH
Q 025163          129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP-AFPLKHQQKDMR  207 (257)
Q Consensus       129 ~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~-~~~~~~~~kd~~  207 (257)
                      +|.++.+|+++|.+.+.++.++.|++.++++.|+|++.+.++++.+.+.||.++++.+++..++|.| +|+++.+.||++
T Consensus       167 ~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~  246 (297)
T 4gbj_A          167 PGAANVIKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDIN  246 (297)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999987 899999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ++++++++.|+|+|+.+.+.++|+.+.++|++++||++|++.+++..
T Consensus       247 l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~a  293 (297)
T 4gbj_A          247 LTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDDA  293 (297)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHHT
T ss_pred             HHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999876

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=100.00  E-value=3.7e-46  Score=317.45  Aligned_cols=253  Identities=79%  Similarity=1.212  Sum_probs=240.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..+|.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|||++...+.        
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l  101 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGV  101 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhh
Confidence            689999999999999999999999999999999999999999999999999999999999999998755433        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...|+.|+++|+++++..+..+++.++++|+++.+++++++|+.++.+++++
T Consensus       102 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~~  181 (310)
T 3doj_A          102 LEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYL  181 (310)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEEe
Confidence                                      445678999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.|.++++|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.++.++++.++++.++|.++|++.++.||+
T Consensus       182 g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl  261 (310)
T 3doj_A          182 GQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDM  261 (310)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  253 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~  253 (257)
                      +.+++++++.|+++|+++.+.++|+.+.+.|+|++||++++++++++
T Consensus       262 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~  308 (310)
T 3doj_A          262 RLALALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS  308 (310)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=100.00  E-value=1.2e-45  Score=315.54  Aligned_cols=254  Identities=30%  Similarity=0.471  Sum_probs=239.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++.+|+++||+|++|||++++++++.+.|+..+.+++++++++|+||+|||++...+.        
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~~~  111 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQGVA  111 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTTCHH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcchhHH
Confidence            689999999999999999999999999999999999999999999999999999999999999998644321        


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeC
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                                               .+...|+.|+++|+++++..+..+++.++++|+++.+++++++|+.+ .+++++|
T Consensus       112 ~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~g  190 (320)
T 4dll_A          112 AAMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATHVG  190 (320)
T ss_dssp             HHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEEEE
T ss_pred             hhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEEeC
Confidence                                     44567899999999999999999999999999999999999999999 8999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHH
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      +.|.++++|+++|.+.+.++.+++|++.++++.|+|++++.++++.+.+.||.++++.++++.++|.++|+++++.||++
T Consensus       191 ~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~  270 (320)
T 4dll_A          191 PHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMR  270 (320)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999899999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      .+.+++++.|+++|+++.+.++|+.+.+.|+|++||+++++++++...
T Consensus       271 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~  318 (320)
T 4dll_A          271 NALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASRNG  318 (320)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC--
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999987654

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=100.00  E-value=1.6e-45  Score=310.47  Aligned_cols=251  Identities=56%  Similarity=0.931  Sum_probs=238.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++.+|.++||+|++|||++++.+.+.+.|+...+++.++++++|+||+|||++...+.        
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            899999999999999999999999999999999999999999999999999999999999999997654432        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...|+.|+++|+++++..+..+++.++++++++.+++++++|+.++.+++++
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHL  161 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEe
Confidence                                      445678999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.+.++++|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.||.++++.+++..++|.++|+++++.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pef_A          162 GDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      +.+++++++.|+++|+++.++++++.+.+.|+|++||++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~  286 (287)
T 3pef_A          242 RLAVALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHh
Confidence            999999999999999999999999999999999999999998875

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=100.00  E-value=1.8e-45  Score=310.14  Aligned_cols=251  Identities=57%  Similarity=0.942  Sum_probs=238.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++.+|+++||+|++|||++++.+.+.+.|+...++++++++++|+||+|||++...+.        
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            589999999999999999999999999999999999999999999999999999999999999998754432        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...|+.|+++|+++++..+..+++.++++++++.+++++++|+.++.+++++
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~  161 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHL  161 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEc
Confidence                                      345578999999999999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.|.+.++|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.|+.++++.+++..++|.++|++.++.||+
T Consensus       162 g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  241 (287)
T 3pdu_A          162 GEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDL  241 (287)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999988999999999999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      +.+++++++.|+++|+++.+.++++.+.+.|+|++||++++++++
T Consensus       242 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~  286 (287)
T 3pdu_A          242 RLAVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE  286 (287)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999986

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=100.00  E-value=2.4e-45  Score=311.59  Aligned_cols=254  Identities=23%  Similarity=0.404  Sum_probs=237.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..++.+|+++||+|++|||++++++.+.+.|... +.++.|+++++|+||+|||++...+.       
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~   87 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDG   87 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhh
Confidence            6899999999999999999999999999999999999999999887 88999999999999999999755433       


Q ss_pred             ---------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 ---------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 ---------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                                 .+...|+.|+++|+++++..+..+++.++++++++.+++++++|+.+++++++
T Consensus        88 l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~  167 (303)
T 3g0o_A           88 VAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYR  167 (303)
T ss_dssp             CGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEEE
T ss_pred             HHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEEE
Confidence                                       34456899999999999999999999999999999999999999999999999


Q ss_pred             eCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHH
Q 025163          126 LGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK  204 (257)
Q Consensus       126 ~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  204 (257)
                      +++ +|.+++.|+++|.+.+.++.+++|++.++++.|++++++.++++.+.+.||.++++.++++.++|.++|+++++.|
T Consensus       168 ~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  247 (303)
T 3g0o_A          168 ISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVK  247 (303)
T ss_dssp             EESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHH
Confidence            998 9999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          205 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       205 d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      |++.+++++++.|+++|+++.++++++.+.+.|+|++||++++++++++.
T Consensus       248 D~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~  297 (303)
T 3g0o_A          248 DLGLVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEG  297 (303)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred             HHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999987653

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=100.00  E-value=7.4e-43  Score=296.54  Aligned_cols=250  Identities=20%  Similarity=0.305  Sum_probs=227.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..+|.+|.++||+|++|||++++++++.+.|+....++.++++++|+||+|||++...+.        
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~   89 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLGMPGVA   89 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchh
Confidence            589999999999999999999999999999999999999988999999999999999999999998864432        


Q ss_pred             ------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe--
Q 025163           73 ------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL--  126 (257)
Q Consensus        73 ------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~--  126 (257)
                                              .+...|+.|+++|++++++....+.+.++++|+++.+++++++|+.++.+++++  
T Consensus        90 ~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~~~~  169 (306)
T 3l6d_A           90 RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPW  169 (306)
T ss_dssp             HHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEECCH
T ss_pred             hccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEEecC
Confidence                                    445678999999999998877777778999999999999999999998899999  


Q ss_pred             CC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcC--CCchhhhccCCcccCCCCCCC-cccchH
Q 025163          127 GE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG--IANPMFKGKGPTMLQSNYAPA-FPLKHQ  202 (257)
Q Consensus       127 g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~-~~~~~~  202 (257)
                      |+ +|.++.+|    .+.+.++.++.|++.++++.|+|++.+.++++.+.  +.++.+.++.+++..++|.++ |++.++
T Consensus       170 g~~~g~g~~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~  245 (306)
T 3l6d_A          170 DEALAFATVLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVH  245 (306)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHH
T ss_pred             CCCccHHHHHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHH
Confidence            87 89999999    45567889999999999999999999999999875  678888888899999999985 689999


Q ss_pred             HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          203 QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       203 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      .||++++++++++.|+++|+++++.++|+.+.+.|+|++||++++++++++.
T Consensus       246 ~KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~~  297 (306)
T 3l6d_A          246 ADAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFAREQ  297 (306)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC---
T ss_pred             HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhHH
Confidence            9999999999999999999999999999999999999999999999998654

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=100.00  E-value=3.7e-41  Score=284.89  Aligned_cols=236  Identities=27%  Similarity=0.380  Sum_probs=218.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..+|.+|+++||+|++|||++++++.+.+.|+..+++++++++ +|+||+|||++...+.        
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~~l~~~   94 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVGELAGH   94 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHHHHHTT
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999999999999999999 9999999998765543        


Q ss_pred             -----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCC
Q 025163           73 -----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV  129 (257)
Q Consensus        73 -----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~  129 (257)
                                             .+...|+.|+++|+++++..+..+++.++++++++.+++++++|+.++.+++++++.
T Consensus        95 l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~  174 (296)
T 3qha_A           95 AKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEP  174 (296)
T ss_dssp             CCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEEEEST
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEEcCCh
Confidence                                   345578999999999999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHhhcCCCchhhhccCCcccCCCCCCCccc----
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTL------LDVLDLGGIANPMFKGKGPTMLQSNYAPAFPL----  199 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~----  199 (257)
                      |.++++|+++|.+.+.++.+++|++.++++.|++++++      .++++.+.+.|+..+  .++++.+ |.++|++    
T Consensus       175 g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~-~~~~f~~~~~~  251 (296)
T 3qha_A          175 GAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--NMKDLEP-DNFLYQPFLHT  251 (296)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--SCSCCCT-TSTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--chhhhhc-CCCCCchhhhh
Confidence            99999999999999999999999999999999999999      899888777775554  6788887 8899999    


Q ss_pred             -chHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCC
Q 025163          200 -KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGD  240 (257)
Q Consensus       200 -~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~  240 (257)
                       +++.||++++.+.+++.|+++|+++.+.++|+.+.+.|+.+
T Consensus       252 ~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~  293 (296)
T 3qha_A          252 RGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKE  293 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC--
T ss_pred             hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCccc
Confidence             99999999999999999999999999999999999988743

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=100.00  E-value=4.8e-39  Score=272.29  Aligned_cols=254  Identities=30%  Similarity=0.546  Sum_probs=231.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.++|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++...+.        
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            689999999999999999999999999999999999999988988888999999999999999997654321        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...|+.|+++|+++++..+..+.+.++++++++.++.++++|+.++.+++++
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  165 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  165 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence                                      334458889999999887777777888889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.+.+.+.|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++.+..+.+.++.+++.++++++.+.||+
T Consensus       166 ~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  245 (299)
T 1vpd_A          166 GDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL  245 (299)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999999998777777776666788888888899999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      +.+++.++++|+++|+.+.++++++.+.+.|++++||+++++++++..
T Consensus       246 ~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  293 (299)
T 1vpd_A          246 ANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLA  293 (299)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=100.00  E-value=3.6e-38  Score=267.15  Aligned_cols=254  Identities=32%  Similarity=0.600  Sum_probs=230.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|||.+...+.        
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999999999999888988888999999999999999987654321        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...++.|+++|+.+++..+..+.+.++++++++.++.++++|+.++.+++++
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  164 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHV  164 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence                                      334458889999998887767777777888899999999999999999998899


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-cccCCCCCCCcccchHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD  205 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd  205 (257)
                      ++.+.+.+.|+++|.+...+..++.|++.++++.|++++++.+++..+...++.+..+.+ .++.+++.++++++.+.||
T Consensus       165 ~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd  244 (301)
T 3cky_A          165 GDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKD  244 (301)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHH
Confidence            999999999999999999999999999999999999999999999987767777776778 8889999999999999999


Q ss_pred             HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          206 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       206 ~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      ++.+++.++++|+++|+.+.++++++.+.+.|+++.||+++++++++..
T Consensus       245 ~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  293 (301)
T 3cky_A          245 LGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQMT  293 (301)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998654

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=100.00  E-value=2.3e-38  Score=267.77  Aligned_cols=254  Identities=28%  Similarity=0.485  Sum_probs=225.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.++|++|++|||++++++.+.+.|+....++.++++++|+||+|||.+...+.        
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            899999999999999999999999999999999999999988988888999999999999999987754433        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...+..|++.|+.+++..+..+.+.++.+++++.++.++++|+.+|.+++++
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~  160 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYC  160 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEe
Confidence                                      233457788899988877667778888899999999999999999999998899


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccC--C-----cccCCCCCCCccc
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG--P-----TMLQSNYAPAFPL  199 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~--~-----~~~~~~~~~~~~~  199 (257)
                      +..|.+.+.|+++|.+.+.++.++.|++.++++.|++++++.+++..+.+.++.+....  +     .+..+++.++|.+
T Consensus       161 ~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~  240 (296)
T 2gf2_A          161 GAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGT  240 (296)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCch
Confidence            98999999999999998999999999999999999999999999998766766665432  2     3445678889999


Q ss_pred             chHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          200 KHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       200 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      +.+.||++.++++++++|+++|+.+.++++++.+.+.|++++||+++++++++.+
T Consensus       241 ~~~~kd~~~~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~  295 (296)
T 2gf2_A          241 TLMAKDLGLAQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREEE  295 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCCC
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999999999997654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=100.00  E-value=3.6e-38  Score=266.39  Aligned_cols=254  Identities=29%  Similarity=0.493  Sum_probs=229.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|| ++++.+.+.+.|+....++.++++++|+||+|||.+...+.        
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            799999999999999999999999999999 99999999888988888999999999999999998864332        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...+++|+++|+++++..+..+.+.++++++++.+++++++|+.++.+++++
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~  162 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLV  162 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEe
Confidence                                      233457888899998877766677777888999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.+.+.+.|+++|.+...+..++.|+..++++.|++++++.+++..+...++.+.++.+.+..+++.++++...+.||+
T Consensus       163 ~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~  242 (295)
T 1yb4_A          163 GGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDL  242 (295)
T ss_dssp             ESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999998776677776666778888899999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      +.+++.++++|+++|+.++++++++++.+.|++++||+++++++++...
T Consensus       243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~~~  291 (295)
T 1yb4_A          243 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALELMAN  291 (295)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999987653

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=100.00  E-value=9.6e-39  Score=272.28  Aligned_cols=244  Identities=19%  Similarity=0.276  Sum_probs=209.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCc-------hhHHHHHHCCCcccC-CHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTL-------SKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~-------~~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|||+|.||.++|.+|+++| |+|++|||++       +..+++.+.|+  ++ ++.++++++|+||+|||++...+
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~  102 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKA  102 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHH
Confidence            68999999999999999999999 9999999998       56667777787  66 88999999999999999987765


Q ss_pred             H------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163           72 S------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK  121 (257)
Q Consensus        72 ~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  121 (257)
                      .                              .+...|+.|+++|++++ ..+..+++.++++|+.+  ++++++|+.++.
T Consensus       103 ~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ll~~~g~  179 (317)
T 4ezb_A          103 VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAERLNALGM  179 (317)
T ss_dssp             HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHHHHHTTTC
T ss_pred             HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHHHHHHhCC
Confidence            4                              44567899999999996 45667788899999887  899999999999


Q ss_pred             CeEEeCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccc
Q 025163          122 KAFFLGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLK  200 (257)
Q Consensus       122 ~~~~~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  200 (257)
                      +++++++ +|.++++|+++|.+.++++.+++|++.++++.|++++.+..+.....+.++  ..+.++++.++|.++|.  
T Consensus       180 ~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~g~~--  255 (317)
T 4ezb_A          180 NLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTERILDSVQETFPGLDW--RDVADYYLSRTFEHGAR--  255 (317)
T ss_dssp             EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCH--HHHHHHHHHHHHHHHHH--
T ss_pred             CeEEeCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCccccH--HHhhhhhhcCCCCCCcc--
Confidence            9999998 999999999999999999999999999999999999755444433323333  34567778888877776  


Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHH----HHHHHHcCCC-CCcHHHHHHHHHhhc
Q 025163          201 HQQKDMRLALALGDENAVSMPIAAAANEA----FKKARSLGLG-DNDFSAVFEVVKDLK  254 (257)
Q Consensus       201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~~~~~g~~-~~d~~~l~~~~~~~~  254 (257)
                       +.||++.+.+++++.|+++|+++.+.++    ++.+.+.|++ +.||+++++.+++.-
T Consensus       256 -~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~~  313 (317)
T 4ezb_A          256 -RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARRL  313 (317)
T ss_dssp             -HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHHC
T ss_pred             -hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhhc
Confidence             5899999999999999999999999999    7777778886 999999999987653

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=100.00  E-value=1.1e-37  Score=266.04  Aligned_cols=251  Identities=51%  Similarity=0.847  Sum_probs=227.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|||++...+.        
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            689999999999999999999999999999999999999988988888999999999999999996554432        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .+...+..|+++|+++++.....+.+.++++++++.++.++++|+.+|.+++++
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~  190 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFL  190 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEe
Confidence                                      223457889999999888888888887888889999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++++.+.+.|++.|.+.+....++.|++.++++.|++++++.+++..+...++.+....+.++.+++.+++++..+.||+
T Consensus       191 ~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~  270 (316)
T 2uyy_A          191 GEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDL  270 (316)
T ss_dssp             SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777776666778888898999999999999


Q ss_pred             HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          207 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       207 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                      +.+++.+++.|+++|+.++++++++.+.+.|+|++||++++++++
T Consensus       271 ~~~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~  315 (316)
T 2uyy_A          271 RLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI  315 (316)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence            999999999999999999999999999999999999999988764

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=100.00  E-value=5.7e-38  Score=264.32  Aligned_cols=251  Identities=25%  Similarity=0.386  Sum_probs=225.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.+ |++|++|||++++.+.+.+.|+...+ +.++++++|+||+|||++...+.        
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEALYPY   79 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHHHTTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHHHHHhh
Confidence            689999999999999999999 99999999999999998887877666 77888899999999998864432        


Q ss_pred             -----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCC
Q 025163           73 -----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEV  129 (257)
Q Consensus        73 -----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~  129 (257)
                                             .+...+..|+++|+++++.....+.+.++++++++.++.++++| .++.+++++++.
T Consensus        80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~  158 (289)
T 2cvz_A           80 LREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPV  158 (289)
T ss_dssp             CCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEEST
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEcCCC
Confidence                                   23334788999999887777777887788889999999999999 999888999999


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-cccCCCCCCCcccchHHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMRL  208 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~~  208 (257)
                      +.+.+.|++.|.+...+..++.|++.++++.|++++++.+++..+...++++..+.+ .++.++++++++++.+.||++.
T Consensus       159 ~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~  238 (289)
T 2cvz_A          159 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGI  238 (289)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHH
Confidence            999999999999999999999999999999999999999999987766777766666 7888899999999999999999


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhc
Q 025163          209 ALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK  254 (257)
Q Consensus       209 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~  254 (257)
                      +++.++++|+++|+.++++++++++.+.|++++||+++++.+++..
T Consensus       239 ~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~~~  284 (289)
T 2cvz_A          239 AMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWG  284 (289)
T ss_dssp             HHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999998654

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=100.00  E-value=3.7e-37  Score=262.06  Aligned_cols=232  Identities=21%  Similarity=0.276  Sum_probs=205.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC--chhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~--~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||..++.+|+++|| +|++|||+  +++.+.+.+.|+....++.++++++|+||+|||++...+.     
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~l~  104 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQAG  104 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHHHG
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHhhH
Confidence            689999999999999999999999 99999997  5888888889999999999999999999999999877655     


Q ss_pred             -------------------------HHHhc--CCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 -------------------------AITSK--GGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 -------------------------~~~~~--g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                               .+..+  |++|+++|+++++.. ..+.+.++++|+.+  ++++++|+.++.++++
T Consensus       105 ~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~-~~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~  181 (312)
T 3qsg_A          105 PHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKP-HGHRVPLVVDGDGA--RRFQAAFTLYGCRIEV  181 (312)
T ss_dssp             GGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTT-TGGGSEEEEESTTH--HHHHHHHHTTTCEEEE
T ss_pred             hhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchh-hcCCEEEEecCChH--HHHHHHHHHhCCCeEE
Confidence                                     34455  899999999997654 47788899999887  8999999999999999


Q ss_pred             eCC-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHH
Q 025163          126 LGE-VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQK  204 (257)
Q Consensus       126 ~g~-~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~k  204 (257)
                      +++ +|.++++|+++|.+.+.++.++.|++.++++.|++++ +.+.+..+. .++.+..+.++++.++|.++|++   .|
T Consensus       182 ~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~~~g~~~---~K  256 (312)
T 3qsg_A          182 LDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMGLADR-VLASLDASF-PEHHLRDLALYLVERNLEHADRR---AH  256 (312)
T ss_dssp             CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHS-GGGTHHHHHHHHHHHHHHHHHHH---HH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcC-CchhHHHhhhHhhcCCCCcccch---HH
Confidence            998 8999999999999999999999999999999999995 667777654 34555666778888888888764   79


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCC
Q 025163          205 DMRLALALGDENAVSMPIAAAANEAFKKARSLGLGD  240 (257)
Q Consensus       205 d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~  240 (257)
                      |++.+.+++++.|+++|+++.+.++++.+.+.|+++
T Consensus       257 Dl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~  292 (312)
T 3qsg_A          257 ELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL  292 (312)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999998876543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=100.00  E-value=4e-34  Score=246.67  Aligned_cols=245  Identities=20%  Similarity=0.324  Sum_probs=204.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcC---ceEEEccCChHHHHH-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKC---TITIGMLADPAAALS-----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~---dvii~~v~~~~~~~~-----   72 (257)
                      |||+|||+|.||..+|.+|.++||+|++|||++++++.+.+.|+..+.+++|+++++   |+||+|||++...+.     
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl~~l~  102 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQRMT  102 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHHHHHG
T ss_pred             CEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999988   999999998833222     


Q ss_pred             -------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhc-------
Q 025163           73 -------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG-------  120 (257)
Q Consensus        73 -------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~-------  120 (257)
                                               .+..+|+.|+++|+++++..+..|+ .+++||+++.+++++++|+.++       
T Consensus       103 ~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~~~~~~~  181 (358)
T 4e21_A          103 PLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAP  181 (358)
T ss_dssp             GGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSCCGGGSC
T ss_pred             hhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhccccccCc
Confidence                                     4556799999999999999999998 8999999999999999999999       


Q ss_pred             -------------CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------------CCC
Q 025163          121 -------------KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS------------------------GLD  163 (257)
Q Consensus       121 -------------~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~------------------------g~~  163 (257)
                                   ..++++|+.|+++.+|+++|.+.+..+.+++|++.++++.                        +++
T Consensus       182 ~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d  261 (358)
T 4e21_A          182 RTPGREKREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLD  261 (358)
T ss_dssp             CCTTGGGCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCC
T ss_pred             ccccccccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCC
Confidence                         5789999999999999999999999999999999999998                        899


Q ss_pred             HHHHHHHHhhcC-CCchhhhccCCcccCCCCCCCc-ccchHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCC
Q 025163          164 PRTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF-PLKHQQKD---MRLALALGDENAVSMPIAAAANEAFKKARSLGL  238 (257)
Q Consensus       164 ~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~-~~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~  238 (257)
                      .+.+.+.++.+. ..|++++.... ++..+.  .+ .+....+|   .+.++..+.+.|+|+|.+.++  ++.+..++  
T Consensus       262 ~~~i~~~~~~g~~~~s~~l~~~~~-~~~~~p--~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~~~~~s~--  334 (358)
T 4e21_A          262 LADITEVWRRGSVISSWLLDLSAT-ALLDSP--DLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LYERFSSR--  334 (358)
T ss_dssp             HHHHHHHHTTTSTTCBHHHHHHHH-HHHHCT--TCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HHHHHHHT--
T ss_pred             HHHHHHHHhCccHHHHHHHHHHHH-HHhhCC--ChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HHHHHHHC--
Confidence            999999999886 68888876432 222221  11 11222222   377999999999999999874  55555553  


Q ss_pred             CCCcHH-HHHHHHHhh
Q 025163          239 GDNDFS-AVFEVVKDL  253 (257)
Q Consensus       239 ~~~d~~-~l~~~~~~~  253 (257)
                      +..++. .++...|+.
T Consensus       335 ~~~~~~~~l~~a~r~~  350 (358)
T 4e21_A          335 GEDDFANRLLSAMRYE  350 (358)
T ss_dssp             TTTHHHHHHHHHHC--
T ss_pred             CCcccHHHHHHHHHHh
Confidence            555665 477777654

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=100.00  E-value=1.2e-33  Score=251.33  Aligned_cols=230  Identities=21%  Similarity=0.288  Sum_probs=195.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC-----CcccCCHHHHhh---cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----ATVGGSPAEVIK---KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g-----~~~~~~~~~~~~---~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||.+||.+|+++||+|++|||++++++.+.+.+     +..+.+++|+++   ++|+||+|||++..++.
T Consensus         5 ~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~   84 (484)
T 4gwg_A            5 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDD   84 (484)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHH
T ss_pred             CEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHH
Confidence            6899999999999999999999999999999999999998763     234689999887   49999999999755543


Q ss_pred             -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163           73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  121 (257)
                                                     .+..+|++|+++|+++++..+..|+ .+++||+++.+++++++|+.++.
T Consensus        85 vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~~ig~  163 (484)
T 4gwg_A           85 FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQGIAA  163 (484)
T ss_dssp             HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSC
T ss_pred             HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHHHhcC
Confidence                                           4556799999999999999999999 79999999999999999999998


Q ss_pred             Ce-------EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---hhcCCCchhhhccCCcccC
Q 025163          122 KA-------FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVL---DLGGIANPMFKGKGPTMLQ  190 (257)
Q Consensus       122 ~~-------~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~---~~~~~~s~~~~~~~~~~~~  190 (257)
                      ++       +++|+.|+++.+|+++|.+.+.++++++|++.++++ .|++++++.+++   +.+.+.||+++.+.+.+..
T Consensus       164 ~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~l~~  243 (484)
T 4gwg_A          164 KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANILKF  243 (484)
T ss_dssp             BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHC
T ss_pred             cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhc
Confidence            87       899999999999999999999999999999999999 999999998886   5678899999988888887


Q ss_pred             CCCCCCcccchHH-----HHH-HHHHHHHhhcCCCchHH-HHHHHHHH
Q 025163          191 SNYAPAFPLKHQQ-----KDM-RLALALGDENAVSMPIA-AAANEAFK  231 (257)
Q Consensus       191 ~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~-~~~~~~~~  231 (257)
                      +|+.+++.++...     |+. +...+.+.+.|+|+|++ +++...+.
T Consensus       244 ~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~  291 (484)
T 4gwg_A          244 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCL  291 (484)
T ss_dssp             BCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             CCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            7876545454432     323 45677888999999954 44444443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-32  Score=246.91  Aligned_cols=225  Identities=20%  Similarity=0.289  Sum_probs=200.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----CCCcccCCHHHHhhc---CceEEEccCChHHHHH-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIKK---CTITIGMLADPAAALS-   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~-   72 (257)
                      +|+|||+|.||.+||.+|+++||+|++|||++++++++.+     .|+..+.++++++++   +|+||+|||++..++. 
T Consensus        12 ~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v   91 (497)
T 2p4q_A           12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDAL   91 (497)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHH
T ss_pred             CEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHH
Confidence            7999999999999999999999999999999999999988     578888899999877   9999999999755443 


Q ss_pred             ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                                                    .+...|+.|+++|+++++..+..++ .++++|+++.+++++++|+.++.+
T Consensus        92 l~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~~g~~  170 (497)
T 2p4q_A           92 INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQSISAK  170 (497)
T ss_dssp             HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSCE
T ss_pred             HHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHHhcCc
Confidence                                          3445689999999999999888898 688899999999999999999988


Q ss_pred             ------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCCC
Q 025163          123 ------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSN  192 (257)
Q Consensus       123 ------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~  192 (257)
                            +.++|+.|.++++|+++|.+.+.++.+++|++.++++ .|++++++.+++.   .+...|++++++.+.+..+|
T Consensus       171 ~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d  250 (497)
T 2p4q_A          171 SDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDD  250 (497)
T ss_dssp             ETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBC
T ss_pred             cCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCC
Confidence                  7889989999999999999999999999999999999 5999999998884   56778888888777778888


Q ss_pred             CCCCcccchHH-----HHHH-HHHHHHhhcCCCchHHHHHH
Q 025163          193 YAPAFPLKHQQ-----KDMR-LALALGDENAVSMPIAAAAN  227 (257)
Q Consensus       193 ~~~~~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~~  227 (257)
                      +.+++.++.+.     ||.. ...+.+++.|+++|+...+.
T Consensus       251 ~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~av  291 (497)
T 2p4q_A          251 VDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEAV  291 (497)
T ss_dssp             TTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             CCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHHH
Confidence            86667787776     7776 68999999999999998853

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.98  E-value=1.4e-31  Score=239.26  Aligned_cols=225  Identities=19%  Similarity=0.298  Sum_probs=195.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHHhhc---CceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|.||.+||.+|+++|++|++|||++++++++.+.    |+..+.|+++++++   +|+||+|||++..++. 
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v   95 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAA   95 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHH
T ss_pred             CeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH
Confidence            579999999999999999999999999999999999999875    78888899999887   9999999999644433 


Q ss_pred             ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                                                    .+...|+.|+++|+++++..+..+. .++++|+++.++.++++|+.++.+
T Consensus        96 l~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~  174 (480)
T 2zyd_A           96 IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAV  174 (480)
T ss_dssp             HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHHHHSCB
T ss_pred             HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHHHHhcc
Confidence                                          3445689999999999999888888 789999999999999999999988


Q ss_pred             -------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCC
Q 025163          123 -------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQS  191 (257)
Q Consensus       123 -------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~  191 (257)
                             +.++|+.|.+.++|+++|.+.+.++.++.|++.++++ .|++++++.+++.   .+...|+......+.+.++
T Consensus       175 ~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~  254 (480)
T 2zyd_A          175 AEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKK  254 (480)
T ss_dssp             CTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCB
T ss_pred             ccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcC
Confidence                   7889999999999999999999999999999999999 6999999998874   4667777777666666677


Q ss_pred             CCCCCcccchHH-----HHH-HHHHHHHhhcCCCchHHHHH
Q 025163          192 NYAPAFPLKHQQ-----KDM-RLALALGDENAVSMPIAAAA  226 (257)
Q Consensus       192 ~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~  226 (257)
                      |+.+++.++.+.     |+. +.+.+.+++.|+++|+.+.+
T Consensus       255 d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a  295 (480)
T 2zyd_A          255 DEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES  295 (480)
T ss_dssp             CTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred             CCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence            776567666554     443 47889999999999999885

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.97  E-value=1.4e-31  Score=222.64  Aligned_cols=227  Identities=19%  Similarity=0.286  Sum_probs=186.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC--CchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r--~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------   72 (257)
                      |||+|||+|.||..++.+|.++||+|++|||  ++++++++.+.|+.  .++.++++++|+||+|||++...+.      
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~   78 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAARRAGR   78 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHHHHHHT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999  77888888877877  6788888999999999998765443      


Q ss_pred             ------------------HH----HhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-C
Q 025163           73 ------------------AI----TSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-V  129 (257)
Q Consensus        73 ------------------~~----~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~  129 (257)
                                        .+    ...|  |+++|+.+++..+..+.. ++++++.+  +.+++ |+.+|.+++++++ +
T Consensus        79 ~~~~~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~  152 (264)
T 1i36_A           79 HVRGIYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIEVRGREP  152 (264)
T ss_dssp             TCCSEEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEEECSSST
T ss_pred             hcCcEEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeEECCCCc
Confidence                              11    1123  778899888887777877 77788766  78999 9999998899998 8


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLA  209 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~  209 (257)
                      +.+.++|++.|.+.+.++.++.|++.++++.|++++ ..+.+..+.+.++..  ..+.+..+++.++++   ..||++.+
T Consensus       153 g~~~~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~~~~~~~~~~g~~---~~~~~~~~  226 (264)
T 1i36_A          153 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAISRLKSSCIHARR---RYEEMKEV  226 (264)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHHHHHHHHHHTHHH---HHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHHHHhcCCCCcchh---hHHHHHHH
Confidence            999999999999999999999999999999999997 667777654433332  334566677777665   68999999


Q ss_pred             HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCc
Q 025163          210 LALGDENAVSMPIAAAANEAFKKARSLGLGDND  242 (257)
Q Consensus       210 ~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d  242 (257)
                      .+.+++. +++|+.++++++++.+.+.+.+..|
T Consensus       227 ~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~  258 (264)
T 1i36_A          227 QDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADA  258 (264)
T ss_dssp             HHHHHTT-SCCSHHHHHHHHHHHHCC------G
T ss_pred             HHHHHHh-cCchHHHHHHHHHHHHHHcCCChhh
Confidence            9999999 9999999999999999877765443

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.97  E-value=1.1e-30  Score=234.15  Aligned_cols=232  Identities=21%  Similarity=0.278  Sum_probs=198.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----CCCcccCCHHHHhh---cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATVGGSPAEVIK---KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||..+|.+|+++||+|++|||++++++.+.+     .|+..+.+++++++   ++|+||+|||++..++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            78999999999999999999999999999999999999987     67888889999875   89999999999754433


Q ss_pred             -------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcC
Q 025163           73 -------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~  121 (257)
                                                     .+...|+.|+++|+++++..+..+. .++++++++.++.++++|+.++.
T Consensus        83 vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~~g~  161 (482)
T 2pgd_A           83 FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAA  161 (482)
T ss_dssp             HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSC
T ss_pred             HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHHhhh
Confidence                                           3344688999999999988888888 67889999999999999999998


Q ss_pred             Ce-------EEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHh---hcCCCchhhhccCCcccC
Q 025163          122 KA-------FFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS-GLDPRTLLDVLD---LGGIANPMFKGKGPTMLQ  190 (257)
Q Consensus       122 ~~-------~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~-g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~  190 (257)
                      ++       .++|+.|.++++|+++|.+.+..+.++.|++.++++. |++++++.+++.   .+...|+..+.+.+.+..
T Consensus       162 ~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~  241 (482)
T 2pgd_A          162 KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKF  241 (482)
T ss_dssp             BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHC
T ss_pred             hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhHHhhc
Confidence            76       6788899999999999999999999999999999999 999999999985   455677777766666677


Q ss_pred             CCCCCCcccchH------HHHHHHHHHHHhhcCCCchHHH-HHHHHHHHH
Q 025163          191 SNYAPAFPLKHQ------QKDMRLALALGDENAVSMPIAA-AANEAFKKA  233 (257)
Q Consensus       191 ~~~~~~~~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~~  233 (257)
                      +++.+++.++.+      .++.+.+.+.++++|+|+|++. .+++.+...
T Consensus       242 ~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s~  291 (482)
T 2pgd_A          242 QDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS  291 (482)
T ss_dssp             BCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             cCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhhh
Confidence            777766666654      4667889999999999999995 566666443

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=99.97  E-value=3.5e-30  Score=227.54  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=177.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvii   61 (257)
                      +|+|||+|+||.++|..|+++||+|++|||++++++.+++.                    +++.++|+.++++++|+||
T Consensus        10 ~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvi   89 (446)
T 4a7p_A           10 RIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVF   89 (446)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEE
Confidence            79999999999999999999999999999999999998762                    2456789999999999999


Q ss_pred             EccCChH----------HHHH-------------------------------HHHhcCCcEEeccccCCccccccCcE--
Q 025163           62 GMLADPA----------AALS-------------------------------AITSKGGHFLEAPVSGSKQPAETGQL--   98 (257)
Q Consensus        62 ~~v~~~~----------~~~~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~--   98 (257)
                      +|||++.          .++.                               .+...+.. .+.++..+|..+.+|..  
T Consensus        90 i~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~eG~a~~  168 (446)
T 4a7p_A           90 IAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLREGAAIE  168 (446)
T ss_dssp             ECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCCTTSHHH
T ss_pred             EEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCcccccccchhh
Confidence            9998874          2332                               22232211 23344444445555543  


Q ss_pred             ------EEEecCC-hhhHHHHHHHHHHhcCC---eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 025163           99 ------VILSAGE-KALYDEAISALNVIGKK---AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLL  168 (257)
Q Consensus        99 ------~~~~~g~-~~~~~~~~~~l~~~~~~---~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~  168 (257)
                            .+++|++ ++..++++++|+.+..+   ++++++++.+++.|++.|++.++.+++++|+..+|++.|+|++++.
T Consensus       169 d~~~p~~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v~  248 (446)
T 4a7p_A          169 DFKRPDRVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVS  248 (446)
T ss_dssp             HHHSCSCEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             hccCCCEEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence                  4677765 88999999999998764   5888999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          169 DVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       169 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ++++.++...+.       .+  ...++|...++.||+.++...+++.|+++|+++++.++.+..
T Consensus       249 ~~~~~~~rig~~-------~l--~pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~  304 (446)
T 4a7p_A          249 RGIGMDNRIGGK-------FL--HAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR  304 (446)
T ss_dssp             HHHHTSTTC----------CC--CCCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCCCc-------cC--CCCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            999976322111       11  123478899999999999999999999999999998887664

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=99.97  E-value=8.2e-30  Score=226.14  Aligned_cols=222  Identities=13%  Similarity=0.184  Sum_probs=178.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+||.++|..|+++||+|++|||++++++.+++.                    ++..+++++++++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            799999999999999999999999999999999999988762                    235677899999999999


Q ss_pred             EEccCChH---------HHHH-------------------------------HHHhcCCc---EEeccccCCccccccCc
Q 025163           61 IGMLADPA---------AALS-------------------------------AITSKGGH---FLEAPVSGSKQPAETGQ   97 (257)
Q Consensus        61 i~~v~~~~---------~~~~-------------------------------~~~~~g~~---~~~~pv~~~~~~~~~~~   97 (257)
                      |+|||++.         .++.                               .+...+..   ..+.++..+|..+..|.
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~  162 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGN  162 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTS
T ss_pred             EEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhcccc
Confidence            99999883         2222                               22221110   12334444455555554


Q ss_pred             E--------EEEecC-ChhhHHHHHHHHHHhcC--CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q 025163           98 L--------VILSAG-EKALYDEAISALNVIGK--KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRT  166 (257)
Q Consensus        98 ~--------~~~~~g-~~~~~~~~~~~l~~~~~--~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~  166 (257)
                      .        .+++|+ +++..+.++++|+.++.  .++++++++.+++.|++.|++.++.+++++|+..+|++.|+|+++
T Consensus       163 ~~~~~~~p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~  242 (450)
T 3gg2_A          163 AIDDFMKPDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSM  242 (450)
T ss_dssp             HHHHHHSCSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             hhhhccCCCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence            3        366665 68999999999999886  367888999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCchhhhccCCcccCCCCCC--CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          167 LLDVLDLGGIANPMFKGKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       167 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      +.++++.++           ++....+.|  +|...++.||+.++...+++.|+++|+++++.++.+..
T Consensus       243 v~~~~~~~~-----------rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~  300 (450)
T 3gg2_A          243 VRLGIGSDS-----------RIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ  300 (450)
T ss_dssp             HHHHHHTST-----------TTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCC-----------CCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            999999763           122223344  58899999999999999999999999999998887654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.97  E-value=5.5e-30  Score=229.13  Aligned_cols=225  Identities=22%  Similarity=0.304  Sum_probs=190.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-C-------CcccCCHHHHhhc---CceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKK---CTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~---~dvii~~v~~~~~   69 (257)
                      |||+|||+|.||..+|.+|+++||+|++|||++++++.+.+. |       +..+.+++++++.   +|+||+|||++..
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            899999999999999999999999999999999999998865 6       5677899998874   9999999999754


Q ss_pred             HHH-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHH
Q 025163           70 ALS-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV  118 (257)
Q Consensus        70 ~~~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~  118 (257)
                      ++.                               .+...|+.|+++|+++++..+..+. .++++++++.++.++++|+.
T Consensus        82 v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~  160 (478)
T 1pgj_A           82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEA  160 (478)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHHHHH
Confidence            433                               2334588999999999988888888 67889999999999999999


Q ss_pred             hcCC-------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh----hcCCCchhhhccCCc
Q 025163          119 IGKK-------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD----LGGIANPMFKGKGPT  187 (257)
Q Consensus       119 ~~~~-------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~----~~~~~s~~~~~~~~~  187 (257)
                      ++.+       +.++|+.|.++++|+++|.+.+..+.++.|++.++++.|++++++.+++.    .+...|+..+...+.
T Consensus       161 ~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~  240 (478)
T 1pgj_A          161 AAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAA  240 (478)
T ss_dssp             HSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHH
T ss_pred             hcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchh
Confidence            9987       68889999999999999999999999999999999999999999999886    456667766665555


Q ss_pred             ccCCCCCCCcccchHH-----HHH-HHHHHHHhhcCCCchHHHHH
Q 025163          188 MLQSNYAPAFPLKHQQ-----KDM-RLALALGDENAVSMPIAAAA  226 (257)
Q Consensus       188 ~~~~~~~~~~~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~  226 (257)
                      +..+|+.+.+.++.+.     |+. +.+++.++++|+|+|+++.+
T Consensus       241 l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a  285 (478)
T 1pgj_A          241 ARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA  285 (478)
T ss_dssp             HHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             hhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence            5556663225555554     444 68999999999999999983

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.97  E-value=4.5e-30  Score=229.65  Aligned_cols=225  Identities=21%  Similarity=0.337  Sum_probs=191.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHHhhc---CceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEVIKK---CTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|.||..++.+|+++|++|++|||++++++.+.+.    |+..+.+++++++.   +|+||+|||++..++. 
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            489999999999999999999999999999999999998875    77788899998876   9999999999754443 


Q ss_pred             ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                                                    .+...|+.|+++|+++++..+..+. .++++++++.++.++++|+.++.+
T Consensus        86 l~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~  164 (474)
T 2iz1_A           86 IKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAK  164 (474)
T ss_dssp             HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHHHSCB
T ss_pred             HHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHHHhcc
Confidence                                          2223578899999999988888888 578889999999999999999987


Q ss_pred             --------eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccC
Q 025163          123 --------AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQ  190 (257)
Q Consensus       123 --------~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~  190 (257)
                              +.++|+.|.+.++|+++|.+.+..+.++.|++.++++ .|++++++.+++.   .+...|+......+.+..
T Consensus       165 ~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~  244 (474)
T 2iz1_A          165 APQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKR  244 (474)
T ss_dssp             CTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTC
T ss_pred             cccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhc
Confidence                    5788999999999999999999999999999999999 7999999998885   345666766665555667


Q ss_pred             CCCCCC-cccchHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q 025163          191 SNYAPA-FPLKHQQ-----KDMR-LALALGDENAVSMPIAAAA  226 (257)
Q Consensus       191 ~~~~~~-~~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~  226 (257)
                      +|+.++ +.++.+.     ||.. .+.+.+++.|+++|+.+.+
T Consensus       245 ~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a  287 (474)
T 2iz1_A          245 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES  287 (474)
T ss_dssp             BCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             CCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence            788766 6666544     5555 6889999999999999885

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=99.97  E-value=3.1e-29  Score=222.66  Aligned_cols=223  Identities=14%  Similarity=0.047  Sum_probs=183.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CC-eEEEEcCCch----hHHHHHHC---------------------C-CcccCCHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLS----KCDELVAH---------------------G-ATVGGSPAE   52 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~-~V~~~~r~~~----~~~~l~~~---------------------g-~~~~~~~~~   52 (257)
                      |||+|||+|+||.++|..|+++ || +|++|||+++    +++.+++.                     | +..+++ .+
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~e   97 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FS   97 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HH
Confidence            7999999999999999999999 99 9999999999    88888651                     2 233445 67


Q ss_pred             HhhcCceEEEccCChH-----------HHHH--------------------------------HH-HhcC------CcEE
Q 025163           53 VIKKCTITIGMLADPA-----------AALS--------------------------------AI-TSKG------GHFL   82 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~-----------~~~~--------------------------------~~-~~~g------~~~~   82 (257)
                      +++++|+||+|||++.           .+..                                .+ +..|      +.++
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v~  177 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALA  177 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEEE
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCceeEE
Confidence            8899999999999873           1111                                22 2234      4688


Q ss_pred             eccccCCccccccCcE---EEEecCChhhHHHHHHHHHHh-cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163           83 EAPVSGSKQPAETGQL---VILSAGEKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE  158 (257)
Q Consensus        83 ~~pv~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~l~~~-~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~  158 (257)
                      ++|.+..+..+..+.+   .++.|++++.+++++++|+.+ +..++++++++.+++.|+++|++.++.+++++|++.+|+
T Consensus       178 ~~Pe~~~~G~a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e  257 (478)
T 3g79_A          178 HAPERVMVGRLLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCE  257 (478)
T ss_dssp             ECCCCCCTTSHHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCccCCccchhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998877666544433   578888999999999999999 788999999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCc--ccchHHHHHHHHHHHHhhcCCC-------chHHHHHHHH
Q 025163          159 KSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVS-------MPIAAAANEA  229 (257)
Q Consensus       159 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~-------~p~~~~~~~~  229 (257)
                      +.|+|++.+.++++..+    ++     ++....+.|++  ...++.||+.++...+++.|++       +++++++.++
T Consensus       258 ~~GiD~~~v~~~~~~~~----~~-----ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~~i  328 (478)
T 3g79_A          258 AMGINVYDVRTGVDSLK----GE-----GITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKV  328 (478)
T ss_dssp             HTTCCHHHHHHHHHTSC----CS-----SSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHHHH
T ss_pred             HcCCCHHHHHHHHCCCc----hh-----hhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHHHH
Confidence            99999999999998753    11     33445566654  6788999999999999999987       8999888776


Q ss_pred             HHHH
Q 025163          230 FKKA  233 (257)
Q Consensus       230 ~~~~  233 (257)
                      -+..
T Consensus       329 N~~~  332 (478)
T 3g79_A          329 NDFM  332 (478)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=99.96  E-value=8.6e-28  Score=214.69  Aligned_cols=221  Identities=15%  Similarity=0.141  Sum_probs=177.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------------CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+||..+|..|+++||+|++|||++++++.+++.+                    +..+++++++++++|+|
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvv   88 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQ   88 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEE
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEE
Confidence            8999999999999999999999999999999999999988642                    34566888888999999


Q ss_pred             EEccCCh---------HHHHH-------------------------------HHHh---cCCcE-EeccccCCccccccC
Q 025163           61 IGMLADP---------AAALS-------------------------------AITS---KGGHF-LEAPVSGSKQPAETG   96 (257)
Q Consensus        61 i~~v~~~---------~~~~~-------------------------------~~~~---~g~~~-~~~pv~~~~~~~~~~   96 (257)
                      |+|||++         ...+.                               .+..   .| .+ ++.++..+|..+..|
T Consensus        89 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~~~eG  167 (478)
T 2y0c_A           89 FIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEFLKEG  167 (478)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCCCCTT
T ss_pred             EEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhhhccc
Confidence            9999985         34333                               1111   12 12 344555666666666


Q ss_pred             cE--------EEEecCC-h----hhHHHHHHHHHHhcC--CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 025163           97 QL--------VILSAGE-K----ALYDEAISALNVIGK--KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSG  161 (257)
Q Consensus        97 ~~--------~~~~~g~-~----~~~~~~~~~l~~~~~--~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g  161 (257)
                      ..        .+++|++ +    +..+.++++|+.+..  .++++++++.+++.|++.|.+.++.+.+++|+..++++.|
T Consensus       168 ~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~G  247 (478)
T 2y0c_A          168 AAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFG  247 (478)
T ss_dssp             CHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            54        4666665 5    688899999998764  5788999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCC--cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          162 LDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPA--FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       162 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ++++++.+.++..           +++....+.|+  +...++.||.+.+.+.++++|+++|++++++++++..
T Consensus       248 id~~~v~~~i~~~-----------~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~  310 (478)
T 2y0c_A          248 ADIEAVRRGIGSD-----------PRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ  310 (478)
T ss_dssp             CCHHHHHHHHHTS-----------TTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcC-----------CccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence            9999999888743           22222344454  4566789999999999999999999999999988764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=99.96  E-value=3.7e-27  Score=206.58  Aligned_cols=219  Identities=16%  Similarity=0.141  Sum_probs=176.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC------------------CCcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------GATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+||.++|..|++ ||+|++|||++++++.+++.                  ++..++|++++++++|+||+
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvVii  115 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVII  115 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEE
Confidence            799999999999999999998 99999999999999988762                  35667899999999999999


Q ss_pred             ccCChH----------HHHH------------------------------HHHhcCCcEEeccccCCccccccCcE---E
Q 025163           63 MLADPA----------AALS------------------------------AITSKGGHFLEAPVSGSKQPAETGQL---V   99 (257)
Q Consensus        63 ~v~~~~----------~~~~------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~---~   99 (257)
                      |||++.          .++.                              .+..  ..+..+|+++.+..+..+.+   .
T Consensus       116 aVPt~~~~~~~~~Dl~~V~~v~~~i~~l~~g~iVV~~STv~pgtt~~l~~~l~~--~~v~~sPe~~~~G~A~~~~l~p~r  193 (432)
T 3pid_A          116 ATPTDYDPKTNYFNTSTVEAVIRDVTEINPNAVMIIKSTIPVGFTRDIKERLGI--DNVIFSPEFLREGRALYDNLHPSR  193 (432)
T ss_dssp             CCCCEEETTTTEEECHHHHHHHHHHHHHCTTSEEEECSCCCTTHHHHHHHHHTC--CCEEECCCCCCTTSHHHHHHSCSC
T ss_pred             eCCCccccccccccHHHHHHHHHHHHhcCCCcEEEEeCCCChHHHHHHHHHHhh--ccEeecCccCCcchhhhcccCCce
Confidence            999872          2222                              1111  23455999988888877766   6


Q ss_pred             EEecCChhhHHHHHHHHHH--hcCC-eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          100 ILSAGEKALYDEAISALNV--IGKK-AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       100 ~~~~g~~~~~~~~~~~l~~--~~~~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      +++|++.+.++++.++|..  ++.. .+++++++.|++.|++.|++.++.+++++|+..+|++.|+|++++.++++..+.
T Consensus       194 IvvG~~~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~~dpr  273 (432)
T 3pid_A          194 IVIGERSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDPR  273 (432)
T ss_dssp             EEESSCSHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTT
T ss_pred             EEecCCHHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCCC
Confidence            8999999999999999987  4432 466778999999999999999999999999999999999999999999987632


Q ss_pred             CchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          177 ANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       177 ~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ..+.+       .  ...+|+...|+.||...+...+  .|++.++++++.++-+..
T Consensus       274 ig~~~-------~--~pg~G~GG~C~pkD~~~L~~~~--~~~~~~li~~~~~~N~~~  319 (432)
T 3pid_A          274 IGNHY-------N--NPSFGYGGYCLPKDTKQLLANY--ESVPNNIIAAIVDANRTR  319 (432)
T ss_dssp             TCSSS-------C--CCCSCCCTTTHHHHHHHHHHHT--TTSCCSHHHHHHHHHHHH
T ss_pred             CCccc-------C--CCCCCCcccchhhhHHHHHHHh--cCCchhHHHHHHHHHHhh
Confidence            22111       0  1123678899999999886544  588999999988876553

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.95  E-value=2.1e-27  Score=212.17  Aligned_cols=218  Identities=13%  Similarity=0.126  Sum_probs=175.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH-------------------CCCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv   59 (257)
                      |||+|||+|+||..+|..|+++  ||+|++|||++++++.+++                   .++..++++.++++++|+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            6899999999999999999999  8999999999999888643                   245566788889999999


Q ss_pred             EEEccCChHH------------------HHH---------------------------HHHhcCCcEEeccccCCccccc
Q 025163           60 TIGMLADPAA------------------ALS---------------------------AITSKGGHFLEAPVSGSKQPAE   94 (257)
Q Consensus        60 ii~~v~~~~~------------------~~~---------------------------~~~~~g~~~~~~pv~~~~~~~~   94 (257)
                      ||+|||++..                  .+.                           .+...+..+++.++..+|....
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~  165 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLA  165 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhh
Confidence            9999987542                  111                           2333344456677777777777


Q ss_pred             cCcEE--------EEecC-----ChhhHHHHHHHHHHh-cCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025163           95 TGQLV--------ILSAG-----EKALYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS  160 (257)
Q Consensus        95 ~~~~~--------~~~~g-----~~~~~~~~~~~l~~~-~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~  160 (257)
                      .+...        +++|+     +++..+.++++++.+ +..++++++++.+++.|++.|.+.++.+++++|+..++++.
T Consensus       166 ~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~  245 (467)
T 2q3e_A          166 EGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEAT  245 (467)
T ss_dssp             TTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77754        66777     778899999999999 67788999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCC--CcccchHHHHHHHHHHHHhhcCCC--chHHHHHHHH
Q 025163          161 GLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVS--MPIAAAANEA  229 (257)
Q Consensus       161 g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~  229 (257)
                      |++++++.++++..+..++           ..+.|  +|...++.||+.++.+.++++|++  .++++++.+.
T Consensus       246 Gid~~~v~~~~~~~~~~~~-----------~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~  307 (467)
T 2q3e_A          246 GADVEEVATAIGMDQRIGN-----------KFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDM  307 (467)
T ss_dssp             TCCHHHHHHHHHTSTTTCS-----------SSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHcCCCCCCc-----------cccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            9999999999987643211           11233  467888999999999999999987  5555554443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=99.95  E-value=4.1e-27  Score=208.77  Aligned_cols=221  Identities=15%  Similarity=0.118  Sum_probs=173.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------------------g-~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+||..+|..|+++||+|++|||++++++.+++.                   | +..+++++++++++|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            899999999999999999999999999999999999988762                   3 45677888889999999


Q ss_pred             EEccCChHH---------HHH------HHHhc---CCcEEe----------------------------ccccCCccccc
Q 025163           61 IGMLADPAA---------ALS------AITSK---GGHFLE----------------------------APVSGSKQPAE   94 (257)
Q Consensus        61 i~~v~~~~~---------~~~------~~~~~---g~~~~~----------------------------~pv~~~~~~~~   94 (257)
                      |+|||++..         ++.      .....   +..++.                            .++..+|....
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~  160 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLR  160 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECccccc
Confidence            999998752         222      11112   333332                            12223333444


Q ss_pred             cCcE--------EEEecCC-hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 025163           95 TGQL--------VILSAGE-KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR  165 (257)
Q Consensus        95 ~~~~--------~~~~~g~-~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~  165 (257)
                      .+..        .+++|++ ++..+.++++++.++..++. ++++.+++.|++.|.+.+..+.+++|+..++++.|++++
T Consensus       161 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~  239 (436)
T 1mv8_A          161 ESTAIKDYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGR  239 (436)
T ss_dssp             TTSHHHHHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccccchhccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence            4443        3566665 88889999999999986544 778999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchhhhccCCccc--CCCCCC--CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          166 TLLDVLDLGGIANPMFKGKGPTML--QSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       166 ~~~~~~~~~~~~s~~~~~~~~~~~--~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      ++.++++...           ++.  ...+.|  ++...++.||...+.+.++++|+++|++++++++.+..
T Consensus       240 ~v~~~~~~~~-----------r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~  300 (436)
T 1mv8_A          240 EVMDVICQDH-----------KLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ  300 (436)
T ss_dssp             HHHHHHTTCT-----------TTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred             HHHHHhcCCC-----------CCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence            9999988532           122  234444  57888999999999999999999999999988876653

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=99.95  E-value=1.3e-26  Score=207.61  Aligned_cols=221  Identities=14%  Similarity=0.100  Sum_probs=171.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~-------------------g~~~~~~~~~~~~~~dv   59 (257)
                      |||+|||+|+||..+|..|+++  ||+|++|||++++++.+++.                   ++..++++.++++++|+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            6999999999999999999998  79999999999999988752                   23455678888899999


Q ss_pred             EEEccCChH--------------HHHH-------------------------------HHHh-cCC------cEEecccc
Q 025163           60 TIGMLADPA--------------AALS-------------------------------AITS-KGG------HFLEAPVS   87 (257)
Q Consensus        60 ii~~v~~~~--------------~~~~-------------------------------~~~~-~g~------~~~~~pv~   87 (257)
                      ||+|||++.              .++.                               .+.. .+.      .+..+|.+
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe~  169 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEF  169 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCCC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCccc
Confidence            999998763              1222                               2333 331      23445544


Q ss_pred             CCccccccCcE---EEEecCCh-----hhHHHHHHHHHHhcC-CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025163           88 GSKQPAETGQL---VILSAGEK-----ALYDEAISALNVIGK-KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAE  158 (257)
Q Consensus        88 ~~~~~~~~~~~---~~~~~g~~-----~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~  158 (257)
                      ..+..+....+   .+++|++.     +.++.++++++.++. .++++++++.+++.|++.|++.++.+++++|+..+++
T Consensus       170 ~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la~  249 (481)
T 2o3j_A          170 LAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCE  249 (481)
T ss_dssp             CCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            43333221111   35666654     577889999999985 7888999999999999999999999999999999999


Q ss_pred             HcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCC--cccchHHHHHHHHHHHHhhcCCC--chHHHHHHHHHHH
Q 025163          159 KSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPA--FPLKHQQKDMRLALALGDENAVS--MPIAAAANEAFKK  232 (257)
Q Consensus       159 ~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~--~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~~  232 (257)
                      +.|+|++++.++++.+.           ++....+.|+  +...++.||+.++...+++.|++  +|+++++.++-+.
T Consensus       250 ~~Gid~~~v~~~~~~~~-----------ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~  316 (481)
T 2o3j_A          250 ATGAEISEVAHAVGYDT-----------RIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNW  316 (481)
T ss_dssp             HHSCCHHHHHHHHHTST-----------TTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HhCcCHHHHHHHHccCC-----------CCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHh
Confidence            99999999999998763           1222335555  47888999999999999999999  9998887765543

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.95  E-value=1.2e-27  Score=206.36  Aligned_cols=243  Identities=17%  Similarity=0.175  Sum_probs=184.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||+++|..|+++||+|++|+|++++++.+++.|              +..++++.++++++|+||+|||+
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~  109 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPS  109 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCH
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCH
Confidence            6899999999999999999999999999999999999998754              23467888999999999999998


Q ss_pred             hHHHHH------------------------------HHHh----cCCcEEeccccCCccccccCcEEEEecCChhhHHHH
Q 025163           67 PAAALS------------------------------AITS----KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEA  112 (257)
Q Consensus        67 ~~~~~~------------------------------~~~~----~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~  112 (257)
                      ....+.                              .+..    ..+.++++|.+.........+..++.+.+++..+++
T Consensus       110 ~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v  189 (356)
T 3k96_A          110 FAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDL  189 (356)
T ss_dssp             HHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHH
Confidence            754433                              0111    234456677766655556666667778899999999


Q ss_pred             HHHHHHhcCCeEEeCCCChHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc-
Q 025163          113 ISALNVIGKKAFFLGEVGNGAK-----------------MKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG-  174 (257)
Q Consensus       113 ~~~l~~~~~~~~~~g~~g~a~~-----------------~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~-  174 (257)
                      +++|+..+.+++...++-..+|                 +|+..|...+++..++.|+..++++.|.+++++.++.+.+ 
T Consensus       190 ~~lf~~~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gD  269 (356)
T 3k96_A          190 IERLHGQRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGD  269 (356)
T ss_dssp             HHHHCCSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHH
T ss_pred             HHHhCCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhH
Confidence            9999998888888777433333                 5677788888899999999999999999999998654432 


Q ss_pred             ---CCCchhhhcc--CCcccCCCCCCC------cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163          175 ---GIANPMFKGK--GPTMLQSNYAPA------FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDF  243 (257)
Q Consensus       175 ---~~~s~~~~~~--~~~~~~~~~~~~------~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~  243 (257)
                         ++.|+.++|+  +..+.+ .++..      ..+.+..++.+.+.++++++|+++|+++++++++.       ++.+.
T Consensus       270 l~~tc~s~~sRN~~~G~~l~~-g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------~~~~~  341 (356)
T 3k96_A          270 LVLTCTDNQSRNRRFGLALGE-GVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH-------EDLDP  341 (356)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHH-TCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCH
T ss_pred             HHHhccCCCCccHHHHHHHHC-CCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CCCCH
Confidence               3556666654  223332 22211      13456788999999999999999999999999886       44555


Q ss_pred             HHHHHHHH
Q 025163          244 SAVFEVVK  251 (257)
Q Consensus       244 ~~l~~~~~  251 (257)
                      ...++.|-
T Consensus       342 ~~~~~~l~  349 (356)
T 3k96_A          342 QQAVQELL  349 (356)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=99.95  E-value=1.1e-25  Score=197.48  Aligned_cols=219  Identities=16%  Similarity=0.122  Sum_probs=167.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC------------------cccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA------------------TVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~------------------~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|+||..+|..|++ ||+|++|||++++++.+++.+.                  ..++++.++++++|+||+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            899999999999999999999 9999999999999999987664                  345678888899999999


Q ss_pred             ccCChH----------HHHH---HH--HhcCC-----------------------cEEeccccCCccccccCcE---EEE
Q 025163           63 MLADPA----------AALS---AI--TSKGG-----------------------HFLEAPVSGSKQPAETGQL---VIL  101 (257)
Q Consensus        63 ~v~~~~----------~~~~---~~--~~~g~-----------------------~~~~~pv~~~~~~~~~~~~---~~~  101 (257)
                      |||++.          .++.   .+  ...+.                       .++.+|.+..+..+..+.+   .++
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v~~~Pe~~~~G~a~~~~~~~~riv  159 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRIIFSPEFLRESKALYDNLYPSRII  159 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEEECCCCCCTTSTTHHHHSCSCEE
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHhhCCCCEEEEeCCCCccHHHHHHHHhCCCeEEECCccccCcchhhcccCCCEEE
Confidence            999973          2222   00  01111                       3444554443333222112   267


Q ss_pred             ecCCh-------hhHHHHHHHHHHhcC--C-eEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163          102 SAGEK-------ALYDEAISALNVIGK--K-AFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL  171 (257)
Q Consensus       102 ~~g~~-------~~~~~~~~~l~~~~~--~-~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~  171 (257)
                      +|++.       +..+.+.++|..-+.  . +++.++++.++|.|++.|.+.++.+++++|+..+|++.|+|++++.+++
T Consensus       160 iG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~  239 (402)
T 1dlj_A          160 VSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGI  239 (402)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             EeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence            77766       666778888865332  2 5788889999999999999999999999999999999999999999999


Q ss_pred             hhcCCCchhhhccCCcccCCCCCC--CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          172 DLGGIANPMFKGKGPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       172 ~~~~~~s~~~~~~~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      +.++..           ....+.|  +|...++.||+.++...++  |+++|+++++.++-+..
T Consensus       240 ~~~~ri-----------~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~  290 (402)
T 1dlj_A          240 SYDDRI-----------GMHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVR  290 (402)
T ss_dssp             HTSTTT-----------CSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHH
T ss_pred             ccCCCC-----------CcCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHh
Confidence            876421           1122345  6788899999999998885  88999999988776654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=99.94  E-value=1.5e-26  Score=202.92  Aligned_cols=213  Identities=14%  Similarity=0.131  Sum_probs=161.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC--------------------cccCCHHHHhhcCceEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA--------------------TVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~--------------------~~~~~~~~~~~~~dvii   61 (257)
                      |..|||+|+||.++|.+|+++||+|++|||++++++.+++...                    ..+++    .+++|+||
T Consensus        13 ~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd----~~~aDvvi   88 (431)
T 3ojo_A           13 KLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTT----PEASDVFI   88 (431)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESS----CCCCSEEE
T ss_pred             ccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCc----hhhCCEEE
Confidence            7899999999999999999999999999999999999986421                    12222    34799999


Q ss_pred             EccCChHH-----------HHH--------------------------------HHHhcC------CcEEeccccCCccc
Q 025163           62 GMLADPAA-----------ALS--------------------------------AITSKG------GHFLEAPVSGSKQP   92 (257)
Q Consensus        62 ~~v~~~~~-----------~~~--------------------------------~~~~~g------~~~~~~pv~~~~~~   92 (257)
                      +|||++..           +..                                .++..|      +.++++|.+..+..
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~  168 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGK  168 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTS
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcc
Confidence            99998862           221                                222244      36889998876665


Q ss_pred             cccCcE---EEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163           93 AETGQL---VILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD  169 (257)
Q Consensus        93 ~~~~~~---~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~  169 (257)
                      +..+.+   .++.|++++..++++++|+.++..++++++++.|++.|+++|++.++.+++++|+..+|++.|+|++++.+
T Consensus       169 A~~~~~~p~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~  248 (431)
T 3ojo_A          169 ILEELVHNNRIIGGVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIE  248 (431)
T ss_dssp             HHHHHHHSCEEEEESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             hhhcccCCCEEEEeCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            544432   57888899999999999999998888999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          170 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       170 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      +++..+....    +       ..-+|+...|+.||..++...+++.+   ++++++.++-+.
T Consensus       249 ~~~~~~ri~~----l-------~pG~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~~  297 (431)
T 3ojo_A          249 MANKHPRVNI----H-------QPGPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINNS  297 (431)
T ss_dssp             HHTTSTTCCC----C-------CCCSCCCCCCBCSCC---------CC---HHHHHHHHHHHT
T ss_pred             HHccCCCccc----C-------CCCCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHHH
Confidence            9987643211    0       11235777888889888888888876   777666655443

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.92  E-value=1.1e-24  Score=185.00  Aligned_cols=233  Identities=17%  Similarity=0.171  Sum_probs=165.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC------------CHHHHhh---cCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------------SPAEVIK---KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------------~~~~~~~---~~dvii~~v~   65 (257)
                      |||+|||+|.||..+|..|.++||+|++|+|++++++.+++.|.....            +..++.+   ++|+||+|||
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            799999999999999999999999999999999999999877754321            3445444   8999999999


Q ss_pred             ChHHHHH--HHHh---cCCcEE----------------------------eccccCCc--cccccCcEEEEe--cCChhh
Q 025163           66 DPAAALS--AITS---KGGHFL----------------------------EAPVSGSK--QPAETGQLVILS--AGEKAL  108 (257)
Q Consensus        66 ~~~~~~~--~~~~---~g~~~~----------------------------~~pv~~~~--~~~~~~~~~~~~--~g~~~~  108 (257)
                      ++...+.  .+..   .+..++                            .++..++.  .....+.+.+..  +++++.
T Consensus        84 ~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~  163 (316)
T 2ew2_A           84 AQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKF  163 (316)
T ss_dssp             HHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHH
T ss_pred             cccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHH
Confidence            7654433  0100   011111                            12222221  122344444432  456788


Q ss_pred             HHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH--H
Q 025163          109 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM---------------------GCMMNTFSEGLVLAEKSGLDP--R  165 (257)
Q Consensus       109 ~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~~E~~~l~~~~g~~~--~  165 (257)
                      .+.++++|+..+.++++.++++.+.|.|++.|...                     ..+..++.|+..++++.|+++  +
T Consensus       164 ~~~~~~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~  243 (316)
T 2ew2_A          164 ALEVVDVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQA  243 (316)
T ss_dssp             HHHHHHHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence            89999999999998888888999999999999653                     456789999999999999986  4


Q ss_pred             HHHHHHhhcCCCchhhhccCCcccCCCC-CCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHc
Q 025163          166 TLLDVLDLGGIANPMFKGKGPTMLQSNY-APAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSL  236 (257)
Q Consensus       166 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~  236 (257)
                      .+.+.+..........+++ +.|. .|+ ..++..+ +.++++.+++.++++|+++|+++.++++++.....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~-~sm~-~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~~  312 (316)
T 2ew2_A          244 EVYTHIVQTYDPNGIGLHY-PSMY-QDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEEL  312 (316)
T ss_dssp             HHHHHHHHTTCTTTTTTSC-CHHH-HHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCCC-cHHH-HHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            6666665421111001111 1121 334 4445444 78999999999999999999999999999877553

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.91  E-value=2.2e-24  Score=181.24  Aligned_cols=223  Identities=16%  Similarity=0.180  Sum_probs=157.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC---C----c-ccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---A----T-VGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g---~----~-~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||..+|..|.++||+|++|+|++++++.+...+   .    . ..++ .+.++++|+||+|||++...+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAWQVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGGGHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHHhHHHH
Confidence            8999999999999999999999999999999988776554432   1    1 2334 4677899999999999875443


Q ss_pred             --HHHh---cCCcEEe--------------------------ccccCC-ccccccCcEEEEe-cCChhhHHHHHHHHHHh
Q 025163           73 --AITS---KGGHFLE--------------------------APVSGS-KQPAETGQLVILS-AGEKALYDEAISALNVI  119 (257)
Q Consensus        73 --~~~~---~g~~~~~--------------------------~pv~~~-~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~  119 (257)
                        .+..   .+..+++                          +...++ +.....+.+.+.. +++++.++.++++|+..
T Consensus        80 ~~~l~~~l~~~~~vv~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~p~~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~  159 (291)
T 1ks9_A           80 VKSLASTLPVTTPILLIHNGMGTIEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTV  159 (291)
T ss_dssp             HHHHHTTSCTTSCEEEECSSSCTTGGGTTCCSCEEEEEECCEEEEETTEEEEEECCCEEEEESSGGGTTCTHHHHHHHTT
T ss_pred             HHHHHhhCCCCCEEEEecCCCCcHHHHHHhcCCeEEEEEeEccEEcCCEEEEecccceEEccCCCCcchHHHHHHHHHhc
Confidence              0110   0111111                          011111 2233445544433 45567788999999999


Q ss_pred             cCCeEEeCCCChHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH----HHHHhhc-
Q 025163          120 GKKAFFLGEVGNGAKMKLVVNMIM------------------GCMMNTFSEGLVLAEKSGLDP--RTL----LDVLDLG-  174 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~~n~~~------------------~~~~~~~~E~~~l~~~~g~~~--~~~----~~~~~~~-  174 (257)
                      +.++++.++++.+.|.|++.|...                  ..+..++.|+..++++.|+++  +.+    .+++... 
T Consensus       160 g~~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~  239 (291)
T 1ks9_A          160 LPDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATA  239 (291)
T ss_dssp             SSCEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999988                  678899999999999999986  444    3334332 


Q ss_pred             CCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163          175 GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKAR  234 (257)
Q Consensus       175 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~  234 (257)
                      ...+.++.         |+..++..+. ..+.+.+++.++++|+++|+.+.++++++...
T Consensus       240 ~~~ssm~~---------d~~~g~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e  289 (291)
T 1ks9_A          240 ENISSMLQ---------DIRALRHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRKE  289 (291)
T ss_dssp             TCCCHHHH---------HHHTTCCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             CCCChHHH---------HHHcCCccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence            23333332         1222222222 24678899999999999999999999998654

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.91  E-value=1.4e-23  Score=180.12  Aligned_cols=240  Identities=17%  Similarity=0.165  Sum_probs=160.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC-----------CcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-----------ATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g-----------~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|||+|+||++++.+|+++||+|++|+|++++++.+++.|           +..++++.+ ++++|+||+|||+...
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~~~   93 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQYI   93 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGGGH
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHHHH
Confidence            7999999999999999999999999999999999999998876           456778888 8899999999997554


Q ss_pred             HHHH--HHhcCCcEEec------------------------cccCCccccc---cCcE-EEEecCChhhHHHHHHHHHHh
Q 025163           70 ALSA--ITSKGGHFLEA------------------------PVSGSKQPAE---TGQL-VILSAGEKALYDEAISALNVI  119 (257)
Q Consensus        70 ~~~~--~~~~g~~~~~~------------------------pv~~~~~~~~---~~~~-~~~~~g~~~~~~~~~~~l~~~  119 (257)
                      .+..  +...+..+++.                        ++..+|..+.   .+.. .+..+++.  ++.++++|+..
T Consensus        94 ~~v~~~l~~~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~g~~~--~~~~~~ll~~~  171 (335)
T 1z82_A           94 REHLLRLPVKPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVAKKLPTAVTLAGEN--SKELQKRISTE  171 (335)
T ss_dssp             HHHHTTCSSCCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHHTTCCEEEEEEETT--HHHHHHHHCCS
T ss_pred             HHHHHHhCcCCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHhCCCceEEEEEehh--HHHHHHHhCCC
Confidence            4431  10022222221                        1111111111   2322 23333333  78899999999


Q ss_pred             cCCeEEeCCCChHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCc
Q 025163          120 GKKAFFLGEVGNGAKMKLV-----------------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG----GIAN  178 (257)
Q Consensus       120 ~~~~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~----~~~s  178 (257)
                      +.++++..++-...|.|+.                 .|.....+..++.|+..++++.|++++++.++...+    +..+
T Consensus       172 g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s  251 (335)
T 1z82_A          172 YFRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNS  251 (335)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHC
T ss_pred             CEEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccC
Confidence            9888877775444454433                 455556778999999999999999998876532110    0112


Q ss_pred             hhhhcc--CCcccCCCCCC------CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 025163          179 PMFKGK--GPTMLQSNYAP------AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV  250 (257)
Q Consensus       179 ~~~~~~--~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~  250 (257)
                      +..+++  ...+.. .+..      .+......+|++.++++++++|+++|+.+.++++++       ...+...+++.|
T Consensus       252 ~~~~n~~~~~~~~~-g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~~~~~~~~~l  323 (335)
T 1z82_A          252 RYSRNRRFGELIAR-GFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGKPPLQSMRDL  323 (335)
T ss_dssp             TTCHHHHHHHHHHH-TCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred             ccCcHHHHHHHHhC-CCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCCCHHHHHHHH
Confidence            222211  111211 1111      123445789999999999999999999999998874       345666666655


Q ss_pred             H
Q 025163          251 K  251 (257)
Q Consensus       251 ~  251 (257)
                      -
T Consensus       324 ~  324 (335)
T 1z82_A          324 M  324 (335)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=99.91  E-value=1e-22  Score=178.45  Aligned_cols=222  Identities=16%  Similarity=0.201  Sum_probs=164.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--------------------g~~~~~~~~~~~~~~dvii   61 (257)
                      +|+|||+|++|..+|..|+++||+|+++|.|+++++.|++-                    .++.++++.++++.+|++|
T Consensus        23 ~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~  102 (444)
T 3vtf_A           23 SLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATF  102 (444)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEE
T ss_pred             EEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceE
Confidence            79999999999999999999999999999999999888641                    1345778889999999999


Q ss_pred             EccCChHH---------HHH-------HHHh--cCCc-EEe------------------------ccccCCccccccCcE
Q 025163           62 GMLADPAA---------ALS-------AITS--KGGH-FLE------------------------APVSGSKQPAETGQL   98 (257)
Q Consensus        62 ~~v~~~~~---------~~~-------~~~~--~g~~-~~~------------------------~pv~~~~~~~~~~~~   98 (257)
                      +|||++..         ++.       .++.  +|.. .+.                        .++...|.....|..
T Consensus       103 I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~eG~a  182 (444)
T 3vtf_A          103 IAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSA  182 (444)
T ss_dssp             ECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCCTTSH
T ss_pred             EEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccccCCcc
Confidence            99987521         111       1111  1111 111                        111111222222221


Q ss_pred             --------EEEec-CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q 025163           99 --------VILSA-GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLD  169 (257)
Q Consensus        99 --------~~~~~-g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~  169 (257)
                              .+++| .++.+.+.++++++.+...++ +.++..|++.|++.|++.++.+++++|...+|++.|+|..++.+
T Consensus       183 ~~d~~~~~riViG~~~~~a~~~~~~ly~~~~~~~~-~~~~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV~~  261 (444)
T 3vtf_A          183 LEDFFKPDRIVIGAGDERAASFLLDVYKAVDAPKL-VMKPREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFE  261 (444)
T ss_dssp             HHHHHSCSCEEEEESSHHHHHHHHHHTTTSCSCEE-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             ccccccCCcEEEcCCCHHHHHHHHHHHhccCCCEE-EechhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence                    13444 467777889999988876654 44568999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 025163          170 VLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA  233 (257)
Q Consensus       170 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~  233 (257)
                      .++...-..+.+       +  ...+|+...|..||..++...+++.|+++++++++.++-+..
T Consensus       262 a~~~d~rig~~~-------l--~PG~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~~  316 (444)
T 3vtf_A          262 AVGLDKRIGRHY-------F--GAGLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEYM  316 (444)
T ss_dssp             HHHTSTTSCSTT-------C--CCSSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             HhccCCCCCCCC-------C--CCCCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHHH
Confidence            998653222111       0  112467889999999999999999999999999887766543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.90  E-value=8.5e-23  Score=169.05  Aligned_cols=223  Identities=13%  Similarity=0.209  Sum_probs=165.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||..++..|.+.|++|.+|||++++.+.+.+. |+....++.++++++|+||+|+|+....+.       
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~~~~~v~~~l~~~   83 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHFK   83 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSCCC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcHhHHHHHHHhccC
Confidence            799999999999999999999999999999999999988865 888888999999999999999996544333       


Q ss_pred             ----------------HHHhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCCCChHHH
Q 025163           73 ----------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGEVGNGAK  134 (257)
Q Consensus        73 ----------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~  134 (257)
                                      .....+..+++ ++.+.+.....+...++.++  +++.++.++++|+.+| +++++++......
T Consensus        84 ~~vv~~~~~~~~~~l~~~~~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~~~~d~~  161 (259)
T 2ahr_A           84 QPIISMAAGISLQRLATFVGQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-STFDISEKDFDTF  161 (259)
T ss_dssp             SCEEECCTTCCHHHHHHHHCTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCGGGHHHH
T ss_pred             CEEEEeCCCCCHHHHHHhcCCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecHHHccHH
Confidence                            11122334544 44444555556665566666  7889999999999999 6888888777777


Q ss_pred             HHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch-hhhccC--Cccc-CCCCCCCcccchHHHHHHH
Q 025163          135 MKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKGKG--PTML-QSNYAPAFPLKHQQKDMRL  208 (257)
Q Consensus       135 ~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~-~~~~~~--~~~~-~~~~~~~~~~~~~~kd~~~  208 (257)
                      .++.  .|.+...+...+.|+   +.+.|++++.+.+++..+...++ ....+.  +.++ ...++|++++..+.||+  
T Consensus       162 ~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~p~~~~~~~~~~l--  236 (259)
T 2ahr_A          162 TALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDFIDAICSPGGTTIAGLMEL--  236 (259)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHCCTTSHHHHHHHHH--
T ss_pred             HHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCChhHHHHHHHH--
Confidence            7764  244444445555555   78899999999999887644444 333232  4444 33457888877766666  


Q ss_pred             HHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          209 ALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       209 ~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                           ++.|++..+.+++...++++.+
T Consensus       237 -----~~~g~~~~~~~a~~~~~~r~~~  258 (259)
T 2ahr_A          237 -----ERLGLTATVSSAIDKTIDKAKS  258 (259)
T ss_dssp             -----HHHTHHHHHHHHHHHHHHHHHH
T ss_pred             -----HHCChHHHHHHHHHHHHHHHhc
Confidence                 4678888888888888887754

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.90  E-value=2.1e-23  Score=177.38  Aligned_cols=225  Identities=13%  Similarity=0.114  Sum_probs=152.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-----C-CeEEEEcCCchhHHHHHH-CCCcccC-------------CHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-----G-FKVTVWNRTLSKCDELVA-HGATVGG-------------SPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-----g-~~V~~~~r~~~~~~~l~~-~g~~~~~-------------~~~~~~~~~dvi   60 (257)
                      |||+|||+|.||.++|..|.++     | |+|++|+| +++++.+++ .|+....             +..+.+.++|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            6899999999999999999999     9 99999999 888999988 7765542             344567899999


Q ss_pred             EEccCChHHHHH-------------------------HHHh--------cCCcEEeccccCCcc--ccccCcEEEEe---
Q 025163           61 IGMLADPAAALS-------------------------AITS--------KGGHFLEAPVSGSKQ--PAETGQLVILS---  102 (257)
Q Consensus        61 i~~v~~~~~~~~-------------------------~~~~--------~g~~~~~~pv~~~~~--~~~~~~~~~~~---  102 (257)
                      |+|||+....+.                         .+..        .|+.++++++.++..  ....+.+.++.   
T Consensus        88 il~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ig~~~  167 (317)
T 2qyt_A           88 LFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFYFGSGL  167 (317)
T ss_dssp             EECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             EEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEEEcCCC
Confidence            999998876443                         1111        122344555543222  22333333232   


Q ss_pred             -cCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHcCC
Q 025163          103 -AGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG-------------------CMMNTFSEGLVLAEKSGL  162 (257)
Q Consensus       103 -~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~-------------------~~~~~~~E~~~l~~~~g~  162 (257)
                       +++.+.+ .+.++|+..+.++++.++++.+.|.|++.|...+                   .+..++.|+..++++.|+
T Consensus       168 ~~~~~~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~  246 (317)
T 2qyt_A          168 PEQTDDEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYG  246 (317)
T ss_dssp             SSCCHHHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCcCHHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence             1235666 8999999999988889899999999999998765                   345899999999999999


Q ss_pred             CHH--HHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          163 DPR--TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       163 ~~~--~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      +++  .+.+.+....   +......+.|. .|+..++..+. ....+.+++.++++|+++|+.+.++++++.
T Consensus       247 ~~~~~~~~~~~~~~~---~~~~~~~~sm~-~d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~  313 (317)
T 2qyt_A          247 QVPDDVVQQLLDKQR---KMPPESTSSMH-SDFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYRELVS  313 (317)
T ss_dssp             CCCSSHHHHHHHHHH---HC----------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred             CCChHHHHHHHHHHh---ccCCCCCChHH-HHHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            863  5666655321   11111112232 24443332211 112688999999999999999999988754

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.89  E-value=1.8e-22  Score=167.40  Aligned_cols=223  Identities=13%  Similarity=0.159  Sum_probs=157.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSAI----   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~----   74 (257)
                      |||+|||+|.||..++..|.++| ++|++|||++++++.+.+. |+....++.+++ ++|+||+||| +...+..+    
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~l~   78 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKNIR   78 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTTCC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHHhc
Confidence            89999999999999999999999 9999999999999999875 888888888888 9999999999 44444311    


Q ss_pred             ------------------H---hcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeC-CCC
Q 025163           75 ------------------T---SKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLG-EVG  130 (257)
Q Consensus        75 ------------------~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g-~~g  130 (257)
                                        .   ..+..++.+ +.+.+.....+...++.++  +++.++.++++|+.+|..+ +++ +..
T Consensus        79 ~~~~ivv~~~~g~~~~~l~~~~~~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~  156 (263)
T 1yqg_A           79 TNGALVLSVAAGLSVGTLSRYLGGTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLDDEEK  156 (263)
T ss_dssp             CTTCEEEECCTTCCHHHHHHHTTSCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECSSTTH
T ss_pred             cCCCEEEEecCCCCHHHHHHHcCCCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeCChhh
Confidence                              1   112344444 4444445555665566666  7888999999999999775 777 411


Q ss_pred             hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch-hhhccC--C-cccCCCCCCCcccchHHH
Q 025163          131 NGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP-MFKGKG--P-TMLQSNYAPAFPLKHQQK  204 (257)
Q Consensus       131 ~a~~~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~-~~~~~~--~-~~~~~~~~~~~~~~~~~k  204 (257)
                      .....-+.  .+.+...++..+.|+   +++.|++++.+.+++..+...++ +.....  + .+....+.|++++..+.+
T Consensus       157 ~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  233 (263)
T 1yqg_A          157 MHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEKLQKNVTSKGGTTHEAVE  233 (263)
T ss_dssp             HHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTCCTTSHHHHHHH
T ss_pred             ccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChhHHHHHH
Confidence            11111111  122234444555565   78899999999988865433323 333222  3 345566778777666555


Q ss_pred             HHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          205 DMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       205 d~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      ++       ++.|++.|+.+++.+.++++.+.|
T Consensus       234 ~l-------~~~~~~~~~~~a~~~~~~~~~~~~  259 (263)
T 1yqg_A          234 AF-------RRHRVAEAISEGVCACVRRSQEME  259 (263)
T ss_dssp             HH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence            54       778999999999999999998764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.88  E-value=8.4e-23  Score=177.27  Aligned_cols=230  Identities=13%  Similarity=0.109  Sum_probs=157.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||+|||+|.||.++|..|+++||+|++|+|++++++.+.+.+              +..++++.++++++|+||+|||+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~   96 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   96 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence            899999999999999999999999999999999999887653              345578888889999999999975


Q ss_pred             HHHHH--H----HHh---c-CCcEEecc--cc-----------------------CCcccc-----ccCcEEEEecCChh
Q 025163           68 AAALS--A----ITS---K-GGHFLEAP--VS-----------------------GSKQPA-----ETGQLVILSAGEKA  107 (257)
Q Consensus        68 ~~~~~--~----~~~---~-g~~~~~~p--v~-----------------------~~~~~~-----~~~~~~~~~~g~~~  107 (257)
                      ...+.  .    +..   . +..+++..  +.                       .++...     ......++.+++++
T Consensus        97 ~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~  176 (366)
T 1evy_A           97 FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADIN  176 (366)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEECSSHH
T ss_pred             HHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEecCCHH
Confidence            43322  2    221   2 44444421  10                       001111     11123344566788


Q ss_pred             hHHHHHHHHHHh--cCCeEEeCCCChHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q 025163          108 LYDEAISALNVI--GKKAFFLGEVGNGAKMKLV-----------------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLL  168 (257)
Q Consensus       108 ~~~~~~~~l~~~--~~~~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~  168 (257)
                      .+++++++|+..  +.++++.+++....|.|+.                 +|.....+..++.|+..++++.|++++++.
T Consensus       177 ~~~~v~~ll~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~  256 (366)
T 1evy_A          177 VARRLQRIMSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVF  256 (366)
T ss_dssp             HHHHHHHHHSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTT
T ss_pred             HHHHHHHHhcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence            889999999999  8887777775555555553                 556667788999999999999999987664


Q ss_pred             HHHhhc----CCCchhhhcc--CCcccCCCCCC------CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          169 DVLDLG----GIANPMFKGK--GPTMLQSNYAP------AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       169 ~~~~~~----~~~s~~~~~~--~~~~~~~~~~~------~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      ++...+    +..++..+++  ...+.. .+..      .+....+.+|++.+++.++++|+++|+++.++++++.
T Consensus       257 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~  331 (366)
T 1evy_A          257 GLAGLGDLQLTCSSELSRNFTVGKKLGK-GLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK  331 (366)
T ss_dssp             STTTHHHHHHHHTCTTSHHHHHHHHHHT-TCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred             ccccchhheeeecCCCCchHHHHHHHhC-CCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence            321110    0112222221  112221 1110      1233456799999999999999999999999988864

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.88  E-value=1.1e-21  Score=168.00  Aligned_cols=240  Identities=14%  Similarity=0.064  Sum_probs=163.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC--CchhHHHHHHCCC-----------cccC--CHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR--TLSKCDELVAHGA-----------TVGG--SPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r--~~~~~~~l~~~g~-----------~~~~--~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||..+|..|.++||+|++|+|  ++++++.+.+.|.           ...+  ++.++++++|+||+|||
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            8999999999999999999999999999999  9999999988764           3445  67788899999999999


Q ss_pred             ChHHHHH--HHH--hcCCcEEec--cc------------------cC---------Ccccccc---C--cEEEEecCChh
Q 025163           66 DPAAALS--AIT--SKGGHFLEA--PV------------------SG---------SKQPAET---G--QLVILSAGEKA  107 (257)
Q Consensus        66 ~~~~~~~--~~~--~~g~~~~~~--pv------------------~~---------~~~~~~~---~--~~~~~~~g~~~  107 (257)
                      ++...+.  .+.  ..+..+++.  .+                  .+         +|..+..   +  ...++.+.+++
T Consensus        81 ~~~~~~v~~~i~~l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~  160 (335)
T 1txg_A           81 TDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSES  160 (335)
T ss_dssp             GGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHH
T ss_pred             hHHHHHHHHHHhcCCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHHHHccCCcEEEEEeCCHH
Confidence            8865443  111  112223321  11                  00         0111100   1  12334445788


Q ss_pred             hHHHHHHHHHHhcCCeEEeCCCChHHHH-----------------HHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHH
Q 025163          108 LYDEAISALNVIGKKAFFLGEVGNGAKM-----------------KLV-----VNMIMGCMMNTFSEGLVLAEKSGLDPR  165 (257)
Q Consensus       108 ~~~~~~~~l~~~~~~~~~~g~~g~a~~~-----------------kl~-----~n~~~~~~~~~~~E~~~l~~~~g~~~~  165 (257)
                      .++.++++|+..+.++++.+++....|.                 |+.     .|.....+..++.|+..++++.|++++
T Consensus       161 ~~~~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~  240 (335)
T 1txg_A          161 SANKMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRE  240 (335)
T ss_dssp             HHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGG
T ss_pred             HHHHHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcc
Confidence            8899999999998888888887666665                 556     677777788999999999999999987


Q ss_pred             HHH------HHHhhcCCCchhhhccCCcccCCCCCCCc----------ccchHHHHHHHHHHHHhhcCCCchHHHHHHHH
Q 025163          166 TLL------DVLDLGGIANPMFKGKGPTMLQSNYAPAF----------PLKHQQKDMRLALALGDENAVSMPIAAAANEA  229 (257)
Q Consensus       166 ~~~------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~----------~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~  229 (257)
                      .+.      +.+..... +. .... .......++...          ...+..+|.+.+++.++++|+++|+++.++++
T Consensus       241 ~~~~~~~~~~~~~~~~~-~~-~~~~-~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P~~~~~~~~  317 (335)
T 1txg_A          241 TAFGLSGFGDLIATFRG-GR-NGML-GELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRV  317 (335)
T ss_dssp             GGGSTTTHHHHHHTTTC-HH-HHHH-HHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             hhhcccchhheeecccc-Cc-cHHH-HHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            664      44433222 11 0000 000111111100          23345699999999999999999999999988


Q ss_pred             HHHHHHcCCCCCcHHHHHHHH
Q 025163          230 FKKARSLGLGDNDFSAVFEVV  250 (257)
Q Consensus       230 ~~~~~~~g~~~~d~~~l~~~~  250 (257)
                      ++.       ..+...+++.+
T Consensus       318 ~~~-------~~~~~~~~~~l  331 (335)
T 1txg_A          318 LYE-------GLKVEEVLFEL  331 (335)
T ss_dssp             HHS-------CCCHHHHHHHH
T ss_pred             HhC-------CCCHHHHHHHH
Confidence            863       23555555544

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.87  E-value=2.9e-22  Score=167.74  Aligned_cols=226  Identities=14%  Similarity=0.111  Sum_probs=149.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-------CCcccCCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------GATVGGSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-------g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      +||+|||+|.||..||.+|+ +|++|++|||++++++++.+.       +++.++|+++ +++||+||.|+|.+..++. 
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~   90 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVE   90 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHH
T ss_pred             CeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHH
Confidence            58999999999999999999 999999999999999988876       7777888876 7899999999999987665 


Q ss_pred             H---HHh-cCCcEEeccccCCcc-------------------ccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 A---ITS-KGGHFLEAPVSGSKQ-------------------PAETGQLVILSAG---EKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 ~---~~~-~g~~~~~~pv~~~~~-------------------~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                      .   +.. .+..+.+...+-.+.                   ....+.+..++.+   +++.+++++++++.+|++++++
T Consensus        91 l~~~l~~~~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~Pv~~~~lveiv~g~~t~~~~~~~~~~l~~~lGk~~v~v  170 (293)
T 1zej_A           91 VLREVERLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVC  170 (293)
T ss_dssp             HHHHHHTTCCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTTTCCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhcCCCCEEEEECCCcCHHHHHHHhhcccceEeEEecCccccCCEEEEECCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence            1   111 232222211000000                   1122345555554   8999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH
Q 025163          127 GEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM  206 (257)
Q Consensus       127 g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~  206 (257)
                      ++.      +++++.+.    .+++|++.++++ |++++++.++++.+.+.++....  |.-+ -|.   ..++....-.
T Consensus       171 ~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~~~~G--P~~l-~D~---~Gld~~~~~~  233 (293)
T 1zej_A          171 KGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLYTLFG--PLGN-LDY---IGLDVAYYAS  233 (293)
T ss_dssp             ESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHHHHHH--HHHH-HHH---HCHHHHHHHH
T ss_pred             ccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCCCCCC--HHHH-HHH---hchHHHHHHH
Confidence            864      67776654    579999999999 88999999999876555431110  1000 011   1123333333


Q ss_pred             HHHHHHHhh-cCCCchHHHHHHHHHHHHHHcCCCCCcHHH
Q 025163          207 RLALALGDE-NAVSMPIAAAANEAFKKARSLGLGDNDFSA  245 (257)
Q Consensus       207 ~~~~~~a~~-~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~  245 (257)
                      +.+.+...+ .-.|.|+++..++.-+.+.+.|.|..+|..
T Consensus       234 ~~l~~~~~~~~~~~~~~l~~~v~~G~lG~Ktg~Gfy~y~~  273 (293)
T 1zej_A          234 LYLYKRFGDEKFKPPEWLQEKIKKGEVGVKAGKGIYEYGP  273 (293)
T ss_dssp             HHHHHHHCCGGGSCCHHHHHHHHTTCCBGGGTBSSSBCCT
T ss_pred             HHHHHHcCCCcCCCCHHHHHHHHCCCCccccCCEeeecCc
Confidence            333322211 113456665544444445556777777754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.87  E-value=9.7e-22  Score=169.78  Aligned_cols=229  Identities=11%  Similarity=0.030  Sum_probs=157.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI   54 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~   54 (257)
                      |||+|||+|.||.++|..|+++|       ++|++|+|+++     +.+.+.+.              ++..++++.+++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA   88 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence            58999999999999999999999       99999999988     88887652              234456888888


Q ss_pred             hcCceEEEccCChHHHHH--HHHh---cCCcEEe--------------------------ccccCCccccc---cC--cE
Q 025163           55 KKCTITIGMLADPAAALS--AITS---KGGHFLE--------------------------APVSGSKQPAE---TG--QL   98 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~--~~~~---~g~~~~~--------------------------~pv~~~~~~~~---~~--~~   98 (257)
                      +++|+||+|||+....+.  .+..   .+..+++                          .++..+|..+.   .+  ..
T Consensus        89 ~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g~~~~  168 (354)
T 1x0v_A           89 EDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCE  168 (354)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHHHTTCCEE
T ss_pred             cCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHHHhcCCce
Confidence            999999999998654433  1111   1211222                          11111121111   12  33


Q ss_pred             EEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcC
Q 025163           99 VILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV-----------------VNMIMGCMMNTFSEGLVLAEKSG  161 (257)
Q Consensus        99 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~E~~~l~~~~g  161 (257)
                      ..+.+++++..++++++|+..+.++++.+++....|.|+.                 .|.....+..++.|+..++++.|
T Consensus       169 ~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G  248 (354)
T 1x0v_A          169 TTIGCKDPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFC  248 (354)
T ss_dssp             EEEECSSHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEEECCHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            3455667888899999999999888888887666777666                 56666788899999999999999


Q ss_pred             C---CHHHHHH------HHhhcCCCchhhhccCCcccCCCCCC--------CcccchHHHHHHHHHHHHhhcCC--CchH
Q 025163          162 L---DPRTLLD------VLDLGGIANPMFKGKGPTMLQSNYAP--------AFPLKHQQKDMRLALALGDENAV--SMPI  222 (257)
Q Consensus       162 ~---~~~~~~~------~~~~~~~~s~~~~~~~~~~~~~~~~~--------~~~~~~~~kd~~~~~~~a~~~g~--~~p~  222 (257)
                      +   +++++.+      ++..... +. .....+.+...+++.        .+...+..+|++.+++.++++|+  ++|+
T Consensus       249 ~~~~~~~~~~~~~g~~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~~~~P~  326 (354)
T 1x0v_A          249 SGPVSSATFLESCGVADLITTCYG-GR-NRKVAEAFARTGKSIEQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPL  326 (354)
T ss_dssp             SSCCCGGGGGSTTTHHHHHHHHHH-CH-HHHHHHHHHHHCCCHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCGGGSHH
T ss_pred             CCCCCcccccccchHHHHHHhhcc-cc-cHHHHHHHHhcCCCHHHHHHhhcCCcEeehHHHHHHHHHHHHHhCCCCCCCH
Confidence            9   8876542      2222111 11 001112222101110        13455678999999999999999  9999


Q ss_pred             HHHHHHHHH
Q 025163          223 AAAANEAFK  231 (257)
Q Consensus       223 ~~~~~~~~~  231 (257)
                      ++.+++++.
T Consensus       327 ~~~v~~~~~  335 (354)
T 1x0v_A          327 FMAVYKVCY  335 (354)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998876

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.87  E-value=2.5e-21  Score=168.53  Aligned_cols=228  Identities=13%  Similarity=0.073  Sum_probs=158.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-------CeEEEEcCCch-----hHHHHHHC--------------CCcccCCHHHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAH--------------GATVGGSPAEVI   54 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-------~~V~~~~r~~~-----~~~~l~~~--------------g~~~~~~~~~~~   54 (257)
                      |||+|||+|.||+++|..|+++|       ++|++|+|+++     +++.+++.              ++..++++.+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            58999999999999999999999       99999999998     88888763              245567888888


Q ss_pred             hcCceEEEccCChHHHHH--HHHh-------cCCcEEecc--------------------------ccCCcccc-----c
Q 025163           55 KKCTITIGMLADPAAALS--AITS-------KGGHFLEAP--------------------------VSGSKQPA-----E   94 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~--~~~~-------~g~~~~~~p--------------------------v~~~~~~~-----~   94 (257)
                      +++|+||+|||+....+.  .+..       .+..+++..                          +..+|..+     .
T Consensus       102 ~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g  181 (375)
T 1yj8_A          102 NDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAME  181 (375)
T ss_dssp             TTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHHHHTT
T ss_pred             cCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHHHHhC
Confidence            999999999997544333  2222       132333311                          11111111     1


Q ss_pred             cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH-----------------HHHHHHHHHHHHHHHHHHH
Q 025163           95 TGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV-----------------VNMIMGCMMNTFSEGLVLA  157 (257)
Q Consensus        95 ~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~-----------------~n~~~~~~~~~~~E~~~l~  157 (257)
                      .....++.+++++..+.++++|+..+.++++.+++....|.|+.                 .|.....+..++.|+..++
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la  261 (375)
T 1yj8_A          182 NFSEATIGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMILFG  261 (375)
T ss_dssp             CCEEEEEECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHH
Confidence            12333455678888899999999999888888887666666554                 5557778889999999999


Q ss_pred             HHc--CCCHHHHHH------HHhhcCC-CchhhhccCCcccC-CC-CCCC--------cccchHHHHHHHHHHHHhhcCC
Q 025163          158 EKS--GLDPRTLLD------VLDLGGI-ANPMFKGKGPTMLQ-SN-YAPA--------FPLKHQQKDMRLALALGDENAV  218 (257)
Q Consensus       158 ~~~--g~~~~~~~~------~~~~~~~-~s~~~~~~~~~~~~-~~-~~~~--------~~~~~~~kd~~~~~~~a~~~g~  218 (257)
                      ++.  |++++++.+      ++..... .+..   .+..+.. ++ ++..        +...+..+|.+.+++.++++|+
T Consensus       262 ~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~---~~~~~~~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv  338 (375)
T 1yj8_A          262 KVFFQKFNENILLESCGFADIITSFLAGRNAK---CSAEFIKSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNM  338 (375)
T ss_dssp             HHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHH---HHHHHHHHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccCCCcchhhccccccceeEeeeCCccHH---HHHHHHhcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCC
Confidence            999  699877643      2222221 1111   1122222 10 1101        3455678999999999999999


Q ss_pred             --CchHHHHHHHHHH
Q 025163          219 --SMPIAAAANEAFK  231 (257)
Q Consensus       219 --~~p~~~~~~~~~~  231 (257)
                        ++|+++.+++++.
T Consensus       339 ~~~~P~~~~v~~~~~  353 (375)
T 1yj8_A          339 TNEFPLFTVLHKISF  353 (375)
T ss_dssp             GGGCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHh
Confidence              9999999998875

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.86  E-value=1.5e-21  Score=160.37  Aligned_cols=147  Identities=16%  Similarity=0.240  Sum_probs=120.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh--------------HHHHHHC-CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--------------CDELVAH-GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~--------------~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||.+||.+|+++||+|++|||++++              .+++.+. +.....++.++++++|+||+|||
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp   99 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATE   99 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccC
Confidence            68999999999999999999999999999999987              5666543 55667789999999999999999


Q ss_pred             ChHHHHH--HH---------------------------------------Hh--------cCCcEEeccccCCccccccC
Q 025163           66 DPAAALS--AI---------------------------------------TS--------KGGHFLEAPVSGSKQPAETG   96 (257)
Q Consensus        66 ~~~~~~~--~~---------------------------------------~~--------~g~~~~~~pv~~~~~~~~~~   96 (257)
                      +....+.  .+                                       ..        +++.++++|+++++..+..+
T Consensus       100 ~~~~~~~~~~i~~~~l~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~~~a~~g  179 (245)
T 3dtt_A          100 GASSIAALTAAGAENLAGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGG  179 (245)
T ss_dssp             GGGHHHHHHHHCHHHHTTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCGGGTGGG
T ss_pred             cHHHHHHHHHhhhhhcCCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCccccCCC
Confidence            8765543  11                                       11        14556677777777777677


Q ss_pred             cEEEEecC-ChhhHHHHHHHHHHhcCC-eEEeCCCChHHHHHHHHHHHHHHHH
Q 025163           97 QLVILSAG-EKALYDEAISALNVIGKK-AFFLGEVGNGAKMKLVVNMIMGCMM  147 (257)
Q Consensus        97 ~~~~~~~g-~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~kl~~n~~~~~~~  147 (257)
                      ++.++++| +++.++.++++|+.++.+ ++++|+++.+..+|+++|++..+..
T Consensus       180 ~~~~~v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~~  232 (245)
T 3dtt_A          180 DHSVFVSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLWG  232 (245)
T ss_dssp             CCCEEEECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHHH
T ss_pred             CeeEEEECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHHH
Confidence            77777755 589999999999999975 6899999999999999999877653

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.85  E-value=3.4e-21  Score=164.33  Aligned_cols=227  Identities=15%  Similarity=0.147  Sum_probs=151.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCch--hHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS--KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~--~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||.+|+.+|.++|    ++|++|+|+++  +++.+.+.|+....++.++++++|+||+|||+....+.  
T Consensus        23 mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~~~~~vl~  102 (322)
T 2izz_A           23 MSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPFILD  102 (322)
T ss_dssp             CCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHHHHHHHHH
Confidence            78999999999999999999999    89999999986  88888888998888999999999999999996544443  


Q ss_pred             HHHh---cCCcEEec------------------------cccCCccccccCcEEEEecCC---hhhHHHHHHHHHHhcCC
Q 025163           73 AITS---KGGHFLEA------------------------PVSGSKQPAETGQLVILSAGE---KALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ~~~~---~g~~~~~~------------------------pv~~~~~~~~~~~~~~~~~g~---~~~~~~~~~~l~~~~~~  122 (257)
                      .+..   .+..+++.                        .+...+.....+. .++.+++   ++.++.++++|+.+|..
T Consensus       103 ~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~~~~vv~~~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~ll~~~G~~  181 (322)
T 2izz_A          103 EIGADIEDRHIVVSCAAGVTISSIEKKLSAFRPAPRVIRCMTNTPVVVREGA-TVYATGTHAQVEDGRLMEQLLSSVGFC  181 (322)
T ss_dssp             HHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSSCCEEEEEECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEE
T ss_pred             HHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCCCCeEEEEeCCcHHHHcCCe-EEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence            1110   11122221                        0111122223333 4555665   78889999999999976


Q ss_pred             eEEeCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchh-hhc--cCCcccCCC-CCCC
Q 025163          123 AFFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM-FKG--KGPTMLQSN-YAPA  196 (257)
Q Consensus       123 ~~~~g~~g~a~~~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~-~~~--~~~~~~~~~-~~~~  196 (257)
                      ++ +.+........+.  .+.+.+.++.++.|+   +.+.|++++.+.+++..+...++. ...  ..+.++... ++|+
T Consensus       182 ~~-~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l~~~v~sp~  257 (322)
T 2izz_A          182 TE-VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQLKDNVSSPG  257 (322)
T ss_dssp             EE-CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCCTT
T ss_pred             EE-eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhCCCCC
Confidence            54 4442333333332  233444445555554   678999999999988865333332 211  122223222 2454


Q ss_pred             cccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCC
Q 025163          197 FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG  239 (257)
Q Consensus       197 ~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~  239 (257)
                      +++       ...++.+++.|++.++.+++.+.++++.+.|.+
T Consensus       258 g~t-------~~~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~  293 (322)
T 2izz_A          258 GAT-------IHALHVLESGGFRSLLINAVEASCIRTRELQSM  293 (322)
T ss_dssp             SHH-------HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHH-------HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhc
Confidence            432       235567788999999999999999999886644

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.83  E-value=4.6e-20  Score=153.18  Aligned_cols=169  Identities=18%  Similarity=0.187  Sum_probs=126.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      |||+|||+|.||..++..|.+.|++ |.+|||++++++.+.+. |+....+++++++++|+||+|+|+....+.  .+..
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v~~~l~~   90 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVE   90 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHHHHHHHT
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHHHHHHHh
Confidence            7899999999999999999999999 99999999999988776 888888998988999999999998855332  1111


Q ss_pred             ---cCCcEE-----------------------eccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcCCeEEeCCC
Q 025163           77 ---KGGHFL-----------------------EAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKAFFLGEV  129 (257)
Q Consensus        77 ---~g~~~~-----------------------~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~~g~~  129 (257)
                         .+..++                       .+|+++++.... +...+++ +++++.++.++++++.+|.+++++++.
T Consensus        91 ~~~~~~ivv~~s~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~  169 (266)
T 3d1l_A           91 GKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTFSKQREVDF-KEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSE  169 (266)
T ss_dssp             TCCTTCEEEECCTTSCGGGSTTTCSSEEEEEECCCC---CCCCC-TTCCEEEEESSHHHHHHHHHHHHTTCSCEEECCHH
T ss_pred             hcCCCcEEEECCCCCchHHHHHHHHhccCcCCceecCCCchhhc-CCCeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHH
Confidence               222222                       233333222111 2223444 788999999999999999999999875


Q ss_pred             C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc
Q 025163          130 G---NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG  174 (257)
Q Consensus       130 g---~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~  174 (257)
                      +   ...+.|+++|...  ....+.|+  ++++.|++++.+.+++..+
T Consensus       170 ~~~~~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~  213 (266)
T 3d1l_A          170 QRKSLHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDET  213 (266)
T ss_dssp             HHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHH
Confidence            4   5678899988742  34555665  6789999999998888764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.82  E-value=2.8e-18  Score=145.99  Aligned_cols=221  Identities=13%  Similarity=0.165  Sum_probs=146.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-------------ccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------------VGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-------------~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||+++|..|+++|++|++| +++++++.+++.|..             ..+++++ ++++|+||+|||..
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~~   97 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKST   97 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEcccc
Confidence            79999999999999999999999999999 889999999876532             2455544 57899999999998


Q ss_pred             HHHHH-------------------------HHHh-cCCcEEe------ccccCCccccccCcEEEEecCChhhHHHHHHH
Q 025163           68 AAALS-------------------------AITS-KGGHFLE------APVSGSKQPAETGQLVILSAGEKALYDEAISA  115 (257)
Q Consensus        68 ~~~~~-------------------------~~~~-~g~~~~~------~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  115 (257)
                      ...+.                         .+.. .+-.++.      +...++......+.-.+.++. .+..+.+.++
T Consensus        98 ~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~~~~~~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~~~l~~~  176 (318)
T 3hwr_A           98 DTQSAALAMKPALAKSALVLSLQNGVENADTLRSLLEQEVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHGANLAAI  176 (318)
T ss_dssp             GHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHHHCCSEEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTTHHHHHH
T ss_pred             cHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHHHcCCcEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHHHHHHHH
Confidence            65444                         1111 1111111      111111111111111223343 4556789999


Q ss_pred             HHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCCH--H---HHHH
Q 025163          116 LNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSGLDP--R---TLLD  169 (257)
Q Consensus       116 l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g~~~--~---~~~~  169 (257)
                      |+..+.+++...++....|.|++.|...+.                     +..++.|+..++++.|++.  +   .+.+
T Consensus       177 l~~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~  256 (318)
T 3hwr_A          177 FAAAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRR  256 (318)
T ss_dssp             HHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHH
T ss_pred             HHhCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence            999999988888899999999999876553                     3568899999999999763  2   2323


Q ss_pred             HHhhc-CCCchhhhc-cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          170 VLDLG-GIANPMFKG-KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       170 ~~~~~-~~~s~~~~~-~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                      .+... ...++++.. ...+...-|+.           .+.+++.++++|+++|.++.++++++....
T Consensus       257 ~~~~~~~~~sSM~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~tP~~~~l~~ll~~~e~  313 (318)
T 3hwr_A          257 IAETMPRQSSSTAQDLARGKRSEIDHL-----------NGLIVRRGDALGIPVPANRVLHALVRLIED  313 (318)
T ss_dssp             HHHHSTTCCCHHHHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcHHHHHHHcCChhHHHHH-----------HHHHHHHHHHhCCCCcHHHHHHHHHHHHHh
Confidence            33222 122222211 01111111111           377999999999999999999999987644

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.82  E-value=1.9e-19  Score=151.01  Aligned_cols=173  Identities=14%  Similarity=0.144  Sum_probs=137.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+ |.||..++..|.++|++|++|||++++++.+.+.|+... ++.++++++|+||+|||+....+.       
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~~~~~~v~~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPDNIIEKVAEDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCchHHHHHHHHHHHh
Confidence            58999999 999999999999999999999999999999988886654 677888999999999998764333       


Q ss_pred             --------------HHH-----hcCCcEE-eccccCCc------cccccCc-------EE--EEecCChhhHHHHHHHHH
Q 025163           73 --------------AIT-----SKGGHFL-EAPVSGSK------QPAETGQ-------LV--ILSAGEKALYDEAISALN  117 (257)
Q Consensus        73 --------------~~~-----~~g~~~~-~~pv~~~~------~~~~~~~-------~~--~~~~g~~~~~~~~~~~l~  117 (257)
                                    ...     ..+..|+ .+|++++.      .....+.       ..  +..+++++.++.++++|+
T Consensus        91 l~~~~ivv~~s~~~~~~~l~~~~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~  170 (286)
T 3c24_A           91 VRPGTIVLILDAAAPYAGVMPERADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICE  170 (286)
T ss_dssp             SCTTCEEEESCSHHHHHTCSCCCTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchhHHHHhhhCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHH
Confidence                          010     1245677 78888766      3344552       22  335678999999999999


Q ss_pred             HhcC---CeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhhc
Q 025163          118 VIGK---KAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLDLG  174 (257)
Q Consensus       118 ~~~~---~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~~~  174 (257)
                      .+|.   +++++++.+.+.+.|.+.|.....++..+.|++..+.. .|++++.+.+++..+
T Consensus       171 ~~G~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~  231 (286)
T 3c24_A          171 TMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGH  231 (286)
T ss_dssp             HHTCSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             HhcCCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            9998   78899877677776999887777888888887766555 599999999888754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.81  E-value=2.4e-19  Score=148.37  Aligned_cols=217  Identities=14%  Similarity=0.183  Sum_probs=145.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~----   72 (257)
                      |||+|||+|.||..++..|.++|    ++|++|||++++      .|+....++.++++++|+||+|||+....+.    
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~v~~~l   78 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDIAGSVLNNI   78 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTTHHHHHHHS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHHHHHHHHHH
Confidence            68999999999999999999999    799999999887      5788888999999999999999997654443    


Q ss_pred             -------------------HHH---hcCCcEEe-ccccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 -------------------AIT---SKGGHFLE-APVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 -------------------~~~---~~g~~~~~-~pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                         .+.   ..+..++. .|  ..+.....+ ..++.++   +++.++.++++|+.+|. ++++
T Consensus        79 ~~~l~~~~vv~~~~gi~~~~l~~~~~~~~~~v~~~p--~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~  154 (262)
T 2rcy_A           79 KPYLSSKLLISICGGLNIGKLEEMVGSENKIVWVMP--NTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEI  154 (262)
T ss_dssp             GGGCTTCEEEECCSSCCHHHHHHHHCTTSEEEEEEC--CGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEE-EEEC
T ss_pred             HHhcCCCEEEEECCCCCHHHHHHHhCCCCcEEEECC--ChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence                               111   11111111 11  112223344 4455544   68888999999999997 8888


Q ss_pred             CCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhh---ccCCcccCCCC-CCCcccc
Q 025163          127 GEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFK---GKGPTMLQSNY-APAFPLK  200 (257)
Q Consensus       127 g~~g~a~~~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~---~~~~~~~~~~~-~~~~~~~  200 (257)
                      ++.......++.  .|.+...+...+.|+   +.+.|++++.+.+++..+...+....   ...+.++...+ +++++..
T Consensus       155 ~~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~t~~  231 (262)
T 2rcy_A          155 KEKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQLKDNIVSPGGITA  231 (262)
T ss_dssp             CGGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHCCTTSHHH
T ss_pred             CHHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhcCCCChHHH
Confidence            875555555553  344444445555554   68899999988888775422222111   22234444433 3444432


Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          201 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                             ..++..++.|++.++.+++.+.++++.+.+
T Consensus       232 -------~~l~~l~~~~~~~~~~~a~~~~~~r~~~~~  261 (262)
T 2rcy_A          232 -------VGLYSLEKNSFKYTVMNAVEAACEKSKAMG  261 (262)
T ss_dssp             -------HHHHHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred             -------HHHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence                   334444666888999999999999887653

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.81  E-value=2.9e-18  Score=145.55  Aligned_cols=216  Identities=18%  Similarity=0.187  Sum_probs=143.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------------~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||+.+|..|.++|++|++|+|++  .+.+++.|...              .+++++ +.++|+||+|||.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            689999999999999999999999999999976  47787766432              245544 6789999999998


Q ss_pred             hHHHHH-------------------------HHHhc-C-CcEE------eccccCCccccccCcEEEEec----CChhhH
Q 025163           67 PAAALS-------------------------AITSK-G-GHFL------EAPVSGSKQPAETGQLVILSA----GEKALY  109 (257)
Q Consensus        67 ~~~~~~-------------------------~~~~~-g-~~~~------~~pv~~~~~~~~~~~~~~~~~----g~~~~~  109 (257)
                      ....+.                         .+... + -.++      .+-..++......+.-.+.+|    .+.+..
T Consensus        80 ~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~~~~~~~v~~~~~~~~a~~~~p~~v~~~~~g~~~ig~~~~~~~~~~  159 (312)
T 3hn2_A           80 FANSRYEELIRPLVEEGTQILTLQNGLGNEEALATLFGAERIIGGVAFLCSNRGEPGEVHHLGAGRIILGEFLPRDTGRI  159 (312)
T ss_dssp             GGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHHHTCGGGEEEEEEEEECCBCSSSEEEECEEEEEEEEESSCCCSHHH
T ss_pred             CCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHHHCCCCcEEEEEEEeeeEEcCCcEEEECCCCeEEEecCCCCccHHH
Confidence            765443                         11110 1 0111      112222222222222223333    245677


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcC--CCH--
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGC---------------------MMNTFSEGLVLAEKSG--LDP--  164 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~---------------------~~~~~~E~~~l~~~~g--~~~--  164 (257)
                      +.+.++|+..+.++++..++....|.|++.|...+.                     +..++.|+..++++.|  ++.  
T Consensus       160 ~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~  239 (312)
T 3hn2_A          160 EELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIAD  239 (312)
T ss_dssp             HHHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCT
T ss_pred             HHHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCH
Confidence            889999999999988888899999999998876542                     3458899999999999  552  


Q ss_pred             HHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHH
Q 025163          165 RTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       165 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                      +....++......+                  ...+.|+.|+            +.+++.++++|+++|+++.++++++.
T Consensus       240 ~~~~~~~~~~~~~~------------------~~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~  301 (312)
T 3hn2_A          240 GYVDDMLEFTDAMG------------------EYKPSMEIDREEGRPLEIAAIFRTPLAYGAREGIAMPRVEMLATLLEQ  301 (312)
T ss_dssp             THHHHHHHHHTTSC------------------SCCCHHHHHHHTTCCCCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC------------------CCCchHHHHHHhCCCccHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            22222222110000                  0011344443            78999999999999999999999987


Q ss_pred             HHHcC
Q 025163          233 ARSLG  237 (257)
Q Consensus       233 ~~~~g  237 (257)
                      ....|
T Consensus       302 ~~~~~  306 (312)
T 3hn2_A          302 ATGEG  306 (312)
T ss_dssp             HTTC-
T ss_pred             HHhcc
Confidence            65554

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.81  E-value=6.8e-18  Score=143.77  Aligned_cols=212  Identities=15%  Similarity=0.079  Sum_probs=145.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC---------------cccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------------TVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||+.+|..|.++|++|++|+|++  .+.+++.|+               ....+++++.+++|+||+|||
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            789999999999999999999999999999976  367766543               234566676668999999999


Q ss_pred             ChHHHHH-------------------------HHHh-c-CCcEEeccccCCc------cccccCcEEEEec----CChhh
Q 025163           66 DPAAALS-------------------------AITS-K-GGHFLEAPVSGSK------QPAETGQLVILSA----GEKAL  108 (257)
Q Consensus        66 ~~~~~~~-------------------------~~~~-~-g~~~~~~pv~~~~------~~~~~~~~~~~~~----g~~~~  108 (257)
                      ..+..+.                         .+.. . .-.++.++++.+.      .....+.-.+.+|    .+.+.
T Consensus        81 ~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~  160 (320)
T 3i83_A           81 VVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAAAFPDNEVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSER  160 (320)
T ss_dssp             CCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHHHSTTSCEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHH
T ss_pred             CCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHHHCCCCcEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHH
Confidence            8765433                         1111 1 1134444433211      1111111223332    34567


Q ss_pred             HHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCCHH---
Q 025163          109 YDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG--------------------CMMNTFSEGLVLAEKSGLDPR---  165 (257)
Q Consensus       109 ~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~--------------------~~~~~~~E~~~l~~~~g~~~~---  165 (257)
                      .+.+.++|+..+.++++..++....|.|++.|...+                    .+..++.|+..++++.|++.+   
T Consensus       161 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~  240 (320)
T 3i83_A          161 VKTLAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDI  240 (320)
T ss_dssp             HHHHHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTH
T ss_pred             HHHHHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHH
Confidence            888999999999998888889999999999986543                    235688999999999997632   


Q ss_pred             --HHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHH
Q 025163          166 --TLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFK  231 (257)
Q Consensus       166 --~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~  231 (257)
                        .+.+........                     ...|+.|+            +.+++.++++|+++|+++.++++++
T Consensus       241 ~~~~~~~~~~~~~~---------------------~sSM~qD~~~gr~tEid~i~G~vv~~a~~~gv~~P~~~~l~~~l~  299 (320)
T 3i83_A          241 VEKNVASTYKMPPY---------------------KTSMLVDFEAGQPMETEVILGNAVRAGRRTRVAIPHLESVYALMK  299 (320)
T ss_dssp             HHHHHHHHHHSCCC---------------------CCHHHHHHHHTCCCCHHHHTHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCC---------------------CCcHHHHHHhCCCchHHHHccHHHHHHHHhCCCCCHHHHHHHHHH
Confidence              222222211100                     11233443            7899999999999999999999998


Q ss_pred             HHHH
Q 025163          232 KARS  235 (257)
Q Consensus       232 ~~~~  235 (257)
                      ....
T Consensus       300 ~~e~  303 (320)
T 3i83_A          300 LLEL  303 (320)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.80  E-value=2.2e-18  Score=148.84  Aligned_cols=227  Identities=14%  Similarity=0.131  Sum_probs=142.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CC--------------cccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------------TVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~--------------~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||..+|..|.++|++|++|+|++++++.+++. +.              ...++++++++++|+||+|||
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999999999988775 32              245688888899999999999


Q ss_pred             ChHHHHH-----------------------------HHHhcC---CcEEe---ccccCCcccc---c----cCcEEEEe-
Q 025163           66 DPAAALS-----------------------------AITSKG---GHFLE---APVSGSKQPA---E----TGQLVILS-  102 (257)
Q Consensus        66 ~~~~~~~-----------------------------~~~~~g---~~~~~---~pv~~~~~~~---~----~~~~~~~~-  102 (257)
                      .....+.                             .+...+   +.|++   .|+.+.....   .    .+.+.+-. 
T Consensus        85 ~~~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~gpg~v~~~~~~~~~~~g~~  164 (359)
T 1bg6_A           85 AIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACL  164 (359)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHHHTTCCCCEEEEESSCSEEEECSSTTEEEEEEECSCEEEEEE
T ss_pred             chHHHHHHHHHHHhCCCCCEEEEcCCCchHHHHHHHHHHhcCCCCeEEEEecCCcEEEEeCCCCEEEEEEeecceEEEec
Confidence            8876544                             111221   22443   3333211110   0    01111111 


Q ss_pred             --cCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH--------------------------------HHHHHHHHHH
Q 025163          103 --AGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLV--------------------------------VNMIMGCMMN  148 (257)
Q Consensus       103 --~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~--------------------------------~n~~~~~~~~  148 (257)
                        +++++.++.++++|..+.    ...+    .|.|+.                                .+.....+..
T Consensus       165 ~~~~~~~~~~~l~~~~~~~~----~~~d----i~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (359)
T 1bg6_A          165 PAAKAGWALEQIGSVLPQYV----AVEN----VLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEK  236 (359)
T ss_dssp             SGGGHHHHHHHHTTTCTTEE----ECSC----HHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhhhcE----EcCC----hHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHH
Confidence              234445566666664431    1121    122222                                1223456678


Q ss_pred             HHHHHHHHHHHcCCCHHHHHHHHhhcCCCchh--hhc-cCCcccCCCCCCCcccc--hHHHHH----HHHHHHHhhcCCC
Q 025163          149 TFSEGLVLAEKSGLDPRTLLDVLDLGGIANPM--FKG-KGPTMLQSNYAPAFPLK--HQQKDM----RLALALGDENAVS  219 (257)
Q Consensus       149 ~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~--~~~-~~~~~~~~~~~~~~~~~--~~~kd~----~~~~~~a~~~g~~  219 (257)
                      ++.|+..++++.|++++.+.+.+......++.  ... ....|......| ..++  .+.||+    +.+++.++++|++
T Consensus       237 ~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~-~e~~~~~~~~D~~~~~g~~~~~a~~~gv~  315 (359)
T 1bg6_A          237 VDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGP-INLNTRYFFEDVSTGLVPLSELGRAVNVP  315 (359)
T ss_dssp             HHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCC-SSSCCHHHHHHHHTTHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCC-CCCCccceecCcCccHHHHHHHHHHcCCC
Confidence            89999999999999987777776543222221  000 012232222212 2244  678998    8999999999999


Q ss_pred             chHHHHHHHHHHHHHHc
Q 025163          220 MPIAAAANEAFKKARSL  236 (257)
Q Consensus       220 ~p~~~~~~~~~~~~~~~  236 (257)
                      +|+.+.++++++.....
T Consensus       316 ~P~~~~l~~~~~~~~~~  332 (359)
T 1bg6_A          316 TPLIDAVLDLISSLIDT  332 (359)
T ss_dssp             CHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHCC
Confidence            99999999999876443

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.80  E-value=2.9e-18  Score=140.85  Aligned_cols=174  Identities=14%  Similarity=0.149  Sum_probs=122.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~----~V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      |||+|||+|.||.+++..|.++|+    +|++|||++++++++.+ .|+....++.++++++|+||+|||+....+.   
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~   82 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASIINE   82 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC--
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            689999999999999999999998    99999999999999975 4888889999999999999999987655444   


Q ss_pred             ---------------------HHH---hcCCcEEe-ccccCCccccccCcEEEEe--cCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 ---------------------AIT---SKGGHFLE-APVSGSKQPAETGQLVILS--AGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 ---------------------~~~---~~g~~~~~-~pv~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                           .+.   ..+..++. .|.  .|.....+...+..  +++++.++.++++|+.+|. +++
T Consensus        83 l~~~l~~~~~vvs~~~gi~~~~l~~~~~~~~~~v~~~p~--~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~  159 (247)
T 3gt0_A           83 IKEIIKNDAIIVTIAAGKSIESTENAFNKKVKVVRVMPN--TPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEI  159 (247)
T ss_dssp             -CCSSCTTCEEEECSCCSCHHHHHHHHCSCCEEEEEECC--GGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEE
T ss_pred             HHhhcCCCCEEEEecCCCCHHHHHHHhCCCCcEEEEeCC--hHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEE
Confidence                                 111   12223332 121  12222334443444  3688899999999999997 667


Q ss_pred             eCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHhhcCCCch
Q 025163          126 LGEVGNGAKMKLVVNMIMGCMMNTFSEGLVL-AEKSGLDPRTLLDVLDLGGIANP  179 (257)
Q Consensus       126 ~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l-~~~~g~~~~~~~~~~~~~~~~s~  179 (257)
                      +++.......-+.....  ..+..+.|++.. +.+.|++++...+++..+...++
T Consensus       160 ~~e~~~d~~~a~~g~gp--a~~~~~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~  212 (247)
T 3gt0_A          160 VSEKLMDVVTSVSGSSP--AYVYMIIEAMADAAVLDGMPRNQAYKFAAQAVLGSA  212 (247)
T ss_dssp             CCGGGHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eCHHHccHHHHHhccHH--HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            76533333233222111  223455566555 88999999999999987644333

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.79  E-value=1.3e-18  Score=147.08  Aligned_cols=165  Identities=14%  Similarity=0.203  Sum_probs=118.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC------------------CcccCCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG------------------ATVGGSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g------------------~~~~~~~~   51 (257)
                      +||+|||+|.||..+|..|+++|++|++|||++++++.+.           +.|                  ++.+++++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            4799999999999999999999999999999998877542           233                  34567888


Q ss_pred             HHhhcCceEEEccCChHHHHH----HHHh---cCCcEEe----------------------ccccCCccccccCcEEEEe
Q 025163           52 EVIKKCTITIGMLADPAAALS----AITS---KGGHFLE----------------------APVSGSKQPAETGQLVILS  102 (257)
Q Consensus        52 ~~~~~~dvii~~v~~~~~~~~----~~~~---~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~  102 (257)
                      ++++++|+||+|||.+.....    .+..   .+..+++                      .+.+.+   .....+..++
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~~~~~~~~~~g~h~~~P---~~~~~~~~i~  172 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP---VPVMKLVEVI  172 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSS---TTTCCEEEEE
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHhcCCcccEEEEecCCC---cccCceEEEe
Confidence            889999999999998754332    1111   1222222                      111111   1123344555


Q ss_pred             cC---ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          103 AG---EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       103 ~g---~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                      ++   +++.++.+.++++.+|..++++++. .+   ++++|++    ..+++|++.++++.+++++++..++..+.+
T Consensus       173 ~g~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l----~~~~~Ea~~l~~~g~~~~~~id~~~~~g~g  241 (302)
T 1f0y_A          173 KTPMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLL----VPYLMEAIRLYERGDASKEDIDTAMKLGAG  241 (302)
T ss_dssp             CCTTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHH----HHHHHHHHHHHHTTSSCHHHHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHhCCC
Confidence            55   7899999999999999888888762 22   3445544    356899999999999999999999876533

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.78  E-value=1.8e-18  Score=154.44  Aligned_cols=222  Identities=14%  Similarity=0.134  Sum_probs=145.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..||..|+++|++|++||+++++++++.+           .|             ++.+++++ .++++
T Consensus         7 kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a   85 (483)
T 3mog_A            7 TVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAAA   85 (483)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGGC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcCC
Confidence            7999999999999999999999999999999999887654           33             23466774 67899


Q ss_pred             ceEEEccCChHHHHH----HHH---hcCCcEEe----------------------ccccCCccccccCcEEEEecC---C
Q 025163           58 TITIGMLADPAAALS----AIT---SKGGHFLE----------------------APVSGSKQPAETGQLVILSAG---E  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~----~~~---~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g---~  105 (257)
                      |+||+|||.+...+.    .+.   ..+..+.+                      ...+.+   +...+++.++++   +
T Consensus        86 DlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~~~~~p~~~ig~hf~~P---a~v~~Lvevv~g~~Ts  162 (483)
T 3mog_A           86 DLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLHFFNP---APVMKLVEVVSGLATA  162 (483)
T ss_dssp             SEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTSSSGGGEEEEEECSS---TTTCCEEEEEECSSCC
T ss_pred             CEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHHHccCccceEEeeecCh---hhhCCeEEEecCCCCC
Confidence            999999999865543    111   11222212                      111111   122356677777   7


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccC
Q 025163          106 KALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG  185 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~  185 (257)
                      ++.++.+.++++.+|+.++++++.. +   ++++|.+..    +++|++.++++.+.+++++.++++.+.+.. +    +
T Consensus       163 ~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~~~G~p-~----G  229 (483)
T 3mog_A          163 AEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRDGAGFP-M----G  229 (483)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHHTTCCS-S----C
T ss_pred             HHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhcCCCC-C----C
Confidence            8999999999999999999998732 2   666666544    789999999999999999999998654431 1    0


Q ss_pred             CcccCCCCCCCcccchHHHHHHHHHHHH--hhcCCCchHHHHHHHHHHHHHHcCCCCCcHH
Q 025163          186 PTMLQSNYAPAFPLKHQQKDMRLALALG--DENAVSMPIAAAANEAFKKARSLGLGDNDFS  244 (257)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~kd~~~~~~~a--~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~  244 (257)
                      |.-+ .|.   ..++...+-.+.+.+..  ...-.|.|+++...+.-+.+.+.|.|..+|.
T Consensus       230 P~~l-~D~---~Gld~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~g~lG~k~g~GfY~y~  286 (483)
T 3mog_A          230 PLEL-TDL---IGQDVNFAVTCSVFNAFWQERRFLPSLVQQELVIGGRLGKKSGLGVYDWR  286 (483)
T ss_dssp             HHHH-HHH---HCHHHHHHHHHHHHHHTTSCGGGCCCHHHHHHHHTTCCBGGGTBSSSBTT
T ss_pred             HHHH-HHH---hchHHHHHHHHHHHHHhcCCCccCchHHHHHHHHCCCCceeCCCEeEECC
Confidence            1000 011   01222222222222221  1122355666655544444566777877774

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.78  E-value=2.2e-18  Score=144.08  Aligned_cols=223  Identities=17%  Similarity=0.198  Sum_probs=148.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|+||.+++..|.++|+   +|++|||++++++++.+. |+....+..++++++|+||+|||+....+.  .+
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~l   83 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEEL   83 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHHHHHHH
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHHH
Confidence            689999999999999999999999   999999999999999886 998888999999999999999987654433  11


Q ss_pred             ----HhcCCcEEe-----------------------ccccCCccccccCcEEEEecC---ChhhHHHHHHHHHHhcCCeE
Q 025163           75 ----TSKGGHFLE-----------------------APVSGSKQPAETGQLVILSAG---EKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        75 ----~~~g~~~~~-----------------------~pv~~~~~~~~~~~~~~~~~g---~~~~~~~~~~~l~~~~~~~~  124 (257)
                          ...+..+++                       .|.  .|.....+. ..+..+   +++.++.++++|+.+|. ++
T Consensus        84 ~~~~l~~~~iiiS~~agi~~~~l~~~l~~~~~vvr~mPn--~p~~v~~g~-~~l~~~~~~~~~~~~~v~~l~~~iG~-~~  159 (280)
T 3tri_A           84 KDILSETKILVISLAVGVTTPLIEKWLGKASRIVRAMPN--TPSSVRAGA-TGLFANETVDKDQKNLAESIMRAVGL-VI  159 (280)
T ss_dssp             HHHHHTTTCEEEECCTTCCHHHHHHHHTCCSSEEEEECC--GGGGGTCEE-EEEECCTTSCHHHHHHHHHHHGGGEE-EE
T ss_pred             HhhccCCCeEEEEecCCCCHHHHHHHcCCCCeEEEEecC--ChHHhcCcc-EEEEeCCCCCHHHHHHHHHHHHHCCC-eE
Confidence                111212222                       121  122222222 233333   57888999999999997 55


Q ss_pred             EeCC-CChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCc-hhhhcc--CC-cccCCCCCCCc
Q 025163          125 FLGE-VGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIAN-PMFKGK--GP-TMLQSNYAPAF  197 (257)
Q Consensus       125 ~~g~-~g~a~~~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s-~~~~~~--~~-~~~~~~~~~~~  197 (257)
                      ++.+ .......-+.  .+.+.+.++.++.|+   +.+.|++++...+++..+..-+ .+....  .+ .+...-.+|+.
T Consensus       160 ~v~~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~l~~~v~spgG  236 (280)
T 3tri_A          160 WVSSEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQLRQFVTSPGG  236 (280)
T ss_dssp             ECSSHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHCCTTS
T ss_pred             EECCHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhccCCCh
Confidence            6643 2222222222  244556666677776   6689999999998887542211 111110  01 11122233433


Q ss_pred             ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          198 PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       198 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      +.       ...++..++.|++..+.+++...++++.+.+
T Consensus       237 tT-------~~~l~~le~~g~~~~~~~av~aa~~r~~el~  269 (280)
T 3tri_A          237 TT-------EQAIKVLESGNLRELFIKALTAAVNRAKELS  269 (280)
T ss_dssp             HH-------HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence            22       3367777899999999999999999987754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.78  E-value=1.2e-17  Score=143.18  Aligned_cols=223  Identities=16%  Similarity=0.163  Sum_probs=146.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------------cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------------GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------------~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||+.+|..|+++|++|++|+|+ ++.+.+++.|...             .+++++ +.++|+||+|||..
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~~   81 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKAP   81 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCch
Confidence            78999999999999999999999999999996 7888888877532             356766 58899999999987


Q ss_pred             HHHHH--HHH---hcCCcEEe--ccc---------------------------------------------cCCcccccc
Q 025163           68 AAALS--AIT---SKGGHFLE--APV---------------------------------------------SGSKQPAET   95 (257)
Q Consensus        68 ~~~~~--~~~---~~g~~~~~--~pv---------------------------------------------~~~~~~~~~   95 (257)
                      ...+.  .+.   ..+..++.  .++                                             .++......
T Consensus        82 ~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~~gv~~~~a~~~~pg~v~~~  161 (335)
T 3ghy_A           82 ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVLGCVVHLTCATVSPGHIRHG  161 (335)
T ss_dssp             HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEEEEEECCCEEESSTTEEEEC
T ss_pred             hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEEEEEEEEEEEEcCCcEEEEC
Confidence            55443  010   01111211  111                                             011011111


Q ss_pred             CcEEEEec----CChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH---------------------HHHHHHH
Q 025163           96 GQLVILSA----GEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM---------------------GCMMNTF  150 (257)
Q Consensus        96 ~~~~~~~~----g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~---------------------~~~~~~~  150 (257)
                      +.-.+.+|    .+.+..+.+.++|+..+.++++..++....|.|++.|...                     ..+..++
T Consensus       162 ~~g~~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~~~~  241 (335)
T 3ghy_A          162 NGRRLILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVM  241 (335)
T ss_dssp             SCCEEEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCeEEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHHHHH
Confidence            11112333    2356678899999999988888888999999998866432                     3456799


Q ss_pred             HHHHHHHHHcCCCH----HHHHHHHhhcC-CCchhhhccCCcccCCCCCCCc-ccchHHHHHHHHHHHHhhcCCCchHHH
Q 025163          151 SEGLVLAEKSGLDP----RTLLDVLDLGG-IANPMFKGKGPTMLQSNYAPAF-PLKHQQKDMRLALALGDENAVSMPIAA  224 (257)
Q Consensus       151 ~E~~~l~~~~g~~~----~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~g~~~p~~~  224 (257)
                      .|+..++++.|+++    +...+...... ..+        .|. .|+..+. ..+ .-.=.+.+++.++++|+++|+++
T Consensus       242 ~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~s--------SM~-qD~~~gr~~tE-id~i~G~vv~~a~~~gv~~P~~~  311 (335)
T 3ghy_A          242 AEAKAIGARIGCPIEQSGEARSAVTRQLGAFKT--------SML-QDAEAGRGPLE-IDALVASVREIGLHVGVPTPQID  311 (335)
T ss_dssp             HHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCC--------TTT-C-----CCCCC-HHHHTHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHcCCCCCccHHHHHHHHhccCCCCc--------HHH-HHHHcCCCCch-HHHHhhHHHHHHHHhCCCCCHHH
Confidence            99999999999764    33333333221 112        222 2333333 211 22234789999999999999999


Q ss_pred             HHHHHHHHHHH
Q 025163          225 AANEAFKKARS  235 (257)
Q Consensus       225 ~~~~~~~~~~~  235 (257)
                      .++++++....
T Consensus       312 ~l~~li~~~e~  322 (335)
T 3ghy_A          312 TLLGLVRLHAQ  322 (335)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999997655

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.77  E-value=8.6e-19  Score=151.48  Aligned_cols=230  Identities=10%  Similarity=-0.037  Sum_probs=154.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--------eEEEEcCCchh-----HHHHHHC--------------CCcccCCHHHHh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--------KVTVWNRTLSK-----CDELVAH--------------GATVGGSPAEVI   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--------~V~~~~r~~~~-----~~~l~~~--------------g~~~~~~~~~~~   54 (257)
                      ||+|||+|.||++||..|+++||        +|++|.|+++.     .+.++..              ++..++|+.+++
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            89999999999999999999875        59999998663     3445432              245677899999


Q ss_pred             hcCceEEEccCChHHHHH---------------------------------HHH-hc--CCcEEeccccCCccccccCcE
Q 025163           55 KKCTITIGMLADPAAALS---------------------------------AIT-SK--GGHFLEAPVSGSKQPAETGQL   98 (257)
Q Consensus        55 ~~~dvii~~v~~~~~~~~---------------------------------~~~-~~--g~~~~~~pv~~~~~~~~~~~~   98 (257)
                      +++|+||++||+......                                 .+. ..  .+.++.+|.++........+.
T Consensus       116 ~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~~~~~~vLsGPs~A~EVa~~~pta  195 (391)
T 4fgw_A          116 KDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEELGIQCGALSGANIATEVAQEHWSE  195 (391)
T ss_dssp             TTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHHCCEEEEEECSCCHHHHHTTCCEE
T ss_pred             hcCCEEEEECChhhhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHHhCccceeccCCchHHHhhcCCCce
Confidence            999999999998866544                                 111 11  234567777776666667776


Q ss_pred             EEEecCChh---------hHHHHHHHHHHhcCCeEEeCC-CC----------------hHHHHHHHHHHHHHHHHHHHHH
Q 025163           99 VILSAGEKA---------LYDEAISALNVIGKKAFFLGE-VG----------------NGAKMKLVVNMIMGCMMNTFSE  152 (257)
Q Consensus        99 ~~~~~g~~~---------~~~~~~~~l~~~~~~~~~~g~-~g----------------~a~~~kl~~n~~~~~~~~~~~E  152 (257)
                      .++.+.+.+         ..+.++++|..-..+++...+ +|                ....+++..|+..+++..++.|
T Consensus       196 ~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALitrGl~E  275 (391)
T 4fgw_A          196 TTVAYHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGE  275 (391)
T ss_dssp             EEEECCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            666655433         245677887765666666655 32                3344556689999999999999


Q ss_pred             HHHHHHHc---CCCHHHHHHHHhhc----CCCchhhhccCCcccCCCCCCC--------cccchHHHHHHHHHHHHhhcC
Q 025163          153 GLVLAEKS---GLDPRTLLDVLDLG----GIANPMFKGKGPTMLQSNYAPA--------FPLKHQQKDMRLALALGDENA  217 (257)
Q Consensus       153 ~~~l~~~~---g~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~--------~~~~~~~kd~~~~~~~a~~~g  217 (257)
                      +..++.+.   |-++.++..+.+.+    ++.|...+.++..+..+..+..        -.+.+.....+.+.+++++++
T Consensus       276 m~rlg~al~~~g~~~tt~~glaGlGDLi~Tc~sSRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v~~l~~~~~  355 (391)
T 4fgw_A          276 IIRFGQMFFPESREETYYQESAGVADLITTCAGGRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCG  355 (391)
T ss_dssp             HHHHHHHHSTTCCHHHHHHSTTTHHHHHHHHHSSHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccCCceeecCCCcccceeEEecCCccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHHHHHHHHcC
Confidence            99999997   44444444332221    2233222222223322111100        013345667789999999999


Q ss_pred             C--CchHHHHHHHHHH
Q 025163          218 V--SMPIAAAANEAFK  231 (257)
Q Consensus       218 ~--~~p~~~~~~~~~~  231 (257)
                      +  +||+++++++++.
T Consensus       356 v~~emPI~~~vy~IL~  371 (391)
T 4fgw_A          356 SVEDFPLFEAVYQIVY  371 (391)
T ss_dssp             CSTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9  8999999999887

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.76  E-value=3e-17  Score=137.44  Aligned_cols=166  Identities=16%  Similarity=0.236  Sum_probs=122.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----------C--------------CcccCCHHHHhh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G--------------ATVGGSPAEVIK   55 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----------g--------------~~~~~~~~~~~~   55 (257)
                      +||+|||+|.||..+|..|+++|++|++|||++++++++.+.           |              +...+++.++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            379999999999999999999999999999999988776543           2              456788989999


Q ss_pred             cCceEEEccCChHHHHH----HH---HhcCC----------------------cEEeccccCCccccccCcEEEEecC--
Q 025163           56 KCTITIGMLADPAAALS----AI---TSKGG----------------------HFLEAPVSGSKQPAETGQLVILSAG--  104 (257)
Q Consensus        56 ~~dvii~~v~~~~~~~~----~~---~~~g~----------------------~~~~~pv~~~~~~~~~~~~~~~~~g--  104 (257)
                      ++|+||+|||.......    .+   ...+.                      .++..+.+.   ......++.++.+  
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~~~~~~~~~ig~h~~~---p~~~~~lvevv~~~~  161 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKFLALHFAN---HVWVNNTAEVMGTTK  161 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHHHHSCGGGEEEEEECS---STTTSCEEEEEECTT
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEccCC---CcccCceEEEEeCCC
Confidence            99999999998743332    00   01122                      233222221   1233455556655  


Q ss_pred             -ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC
Q 025163          105 -EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI  176 (257)
Q Consensus       105 -~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~  176 (257)
                       +++.++.++++++.+|+.+++++....+.   ++++.+    ...+.|++.++++.+.+++++.++++.+.+
T Consensus       162 t~~~~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~----~~~~~ea~~l~~~g~~~~~~id~~~~~~~g  227 (283)
T 4e12_A          162 TDPEVYQQVVEFASAIGMVPIELKKEKAGY---VLNSLL----VPLLDAAAELLVDGIADPETIDKTWRIGTG  227 (283)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEECSSCCTTT---THHHHH----HHHHHHHHHHHHTTSCCHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEecCCCCE---EehHHH----HHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence             68899999999999999998885445554   233333    357889999999999999999999986533

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.76  E-value=3.9e-18  Score=143.57  Aligned_cols=222  Identities=13%  Similarity=0.138  Sum_probs=142.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC---cccCCHHHHh-hcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---TVGGSPAEVI-KKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~---~~~~~~~~~~-~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||+.++..|.++|++|++|+|+++.++.....|.   ....++.+.+ .++|+||+|||..+..+.  .+
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~~~~l~~l   82 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQLDAVIPHL   82 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGHHHHGGGH
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCHHHHHHHH
Confidence            68999999999999999999999999999999776543222342   1223445554 789999999999876655  11


Q ss_pred             Hh------------cCCc---------EE------eccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeC
Q 025163           75 TS------------KGGH---------FL------EAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG  127 (257)
Q Consensus        75 ~~------------~g~~---------~~------~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g  127 (257)
                      +.            .|+.         .+      .+-..++. ....+...+. .++.+..+.+.++|+.-+.++++..
T Consensus        83 ~~~l~~~~~iv~~~nGi~~~~~~~~~~v~~g~~~~~a~~~~pg-~v~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~  160 (294)
T 3g17_A           83 TYLAHEDTLIILAQNGYGQLEHIPFKNVCQAVVYISGQKKGDV-VTHFRDYQLR-IQDNALTRQFRDLVQDSQIDIVLEA  160 (294)
T ss_dssp             HHHEEEEEEEEECCSSCCCGGGCCCSCEEECEEEEEEEEETTE-EEEEEEEEEE-EECSHHHHHHHHHTTTSSCEEEEES
T ss_pred             HHhhCCCCEEEEeccCcccHhhCCCCcEEEEEEEEEEEEcCCC-EEEECCCEEe-cCccHHHHHHHHHHHhCCCceEECh
Confidence            10            1110         00      01111111 1111111112 2455667889999998888888888


Q ss_pred             CCChHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHHhh----c-CCCchh
Q 025163          128 EVGNGAKMKLVVNMIMG--------------------CMMNTFSEGLVLAEKSGLD--PRTLLDVLDL----G-GIANPM  180 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~--------------------~~~~~~~E~~~l~~~~g~~--~~~~~~~~~~----~-~~~s~~  180 (257)
                      ++....|.|++.|...+                    .+..++.|+..++++.|++  ++.+.+.+..    . ...+++
T Consensus       161 di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~~sSM  240 (294)
T 3g17_A          161 NIQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGYPDEMGTSM  240 (294)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCCCcH
Confidence            89999999999998544                    1245889999999999975  4444444432    1 111222


Q ss_pred             hhc-cCCcccCCCCCCCcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          181 FKG-KGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       181 ~~~-~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                      ++. ...+...-|+.           .+.+++.++++|+++|.++.++++++...+
T Consensus       241 ~qD~~~gr~tEid~i-----------~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~  285 (294)
T 3g17_A          241 YYDIVHQQPLEVEAI-----------QGFIYRRAREHNLDTPYLDTIYSFLRAYQQ  285 (294)
T ss_dssp             HHHHHTTCCCSGGGT-----------HHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCccHHHh-----------hhHHHHHHHHhCCCCChHHHHHHHHHHHHh
Confidence            211 00111111110           378999999999999999999999987654

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.73  E-value=1.3e-16  Score=135.21  Aligned_cols=148  Identities=17%  Similarity=0.197  Sum_probs=116.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHH-HhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAE-VIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~--~~~~~~~~-~~~~~dvii~~v~~~~~~~~---   72 (257)
                      |||+|||+|.||..+|..|.++|+  +|++|||++++++.+.+.|+  ....++++ +++++|+||+|||.....+.   
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~  113 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKK  113 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHHHHH
Confidence            589999999999999999999999  99999999999999988887  45678888 89999999999998765443   


Q ss_pred             -----------------------HHHhc-CCcEEe-ccccCCc----cccc----cCcEEEEec---CChhhHHHHHHHH
Q 025163           73 -----------------------AITSK-GGHFLE-APVSGSK----QPAE----TGQLVILSA---GEKALYDEAISAL  116 (257)
Q Consensus        73 -----------------------~~~~~-g~~~~~-~pv~~~~----~~~~----~~~~~~~~~---g~~~~~~~~~~~l  116 (257)
                                             .+... +-.|+. .|++++.    ..+.    .+...+++.   ++++.++.+++++
T Consensus       114 l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~  193 (314)
T 3ggo_A          114 LSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVW  193 (314)
T ss_dssp             HHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHH
T ss_pred             HhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHH
Confidence                                   11111 116776 6777643    2222    566666663   5788999999999


Q ss_pred             HHhcCCeEEeCCCChHHHHHHHHHHHHHHHHH
Q 025163          117 NVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMN  148 (257)
Q Consensus       117 ~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~  148 (257)
                      +.+|.+++++++......+.+++.....+...
T Consensus       194 ~~~G~~v~~~~~~~hD~~~a~~s~lph~~a~~  225 (314)
T 3ggo_A          194 EDVGGVVEYMSPELHDYVFGVVSHLPHAVAFA  225 (314)
T ss_dssp             HHTTCEEEECCHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998888888888887765544333

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.73  E-value=2.2e-17  Score=139.81  Aligned_cols=215  Identities=10%  Similarity=0.032  Sum_probs=134.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCC----------HHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGS----------PAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~----------~~~~~~~~dvii~~v~~~~~~   70 (257)
                      |||+|||+|.||+.++..|. +|++|++|+|++++++.+++.|+....+          ..+....+|+||+|||..+..
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~~   81 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQLQ   81 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGGHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHHHH
Confidence            79999999999999999999 9999999999999999998877654311          023457899999999987665


Q ss_pred             HH-----------------------HHHhc-C-CcEEe------ccccCCcc--ccccCcEEEEe-cCChhhHHHHHHHH
Q 025163           71 LS-----------------------AITSK-G-GHFLE------APVSGSKQ--PAETGQLVILS-AGEKALYDEAISAL  116 (257)
Q Consensus        71 ~~-----------------------~~~~~-g-~~~~~------~pv~~~~~--~~~~~~~~~~~-~g~~~~~~~~~~~l  116 (257)
                      +.                       .+... + -.++.      +-..++..  ....+.+.+-. .+..+.++.+.+.|
T Consensus        82 ~~l~~l~~~~~~~ivs~~nGi~~~e~l~~~~~~~~vl~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~l~~~l  161 (307)
T 3ego_A           82 SVFSSLERIGKTNILFLQNGMGHIHDLKDWHVGHSIYVGIVEHGAVRKSDTAVDHTGLGAIKWSAFDDAEPDRLNILFQH  161 (307)
T ss_dssp             HHHHHTTSSCCCEEEECCSSSHHHHHHHTCCCSCEEEEEEECCEEEECSSSEEEEEECCCEEEEECTTCCGGGGTTTTSS
T ss_pred             HHHHHhhcCCCCeEEEecCCccHHHHHHHhCCCCcEEEEEEeeceEECCCCEEEEeeeeeEEEEeCCCCcHHHHHHHHHh
Confidence            54                       11111 1 01111      11111111  11122221111 12234444555666


Q ss_pred             HHhcCCeEEeCCCChHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHcCCCHHHHHHHHhhcC
Q 025163          117 NVIGKKAFFLGEVGNGAKMKLVVNMIMGCM---------------------MNTFSEGLVLAEKSGLDPRTLLDVLDLGG  175 (257)
Q Consensus       117 ~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~---------------------~~~~~E~~~l~~~~g~~~~~~~~~~~~~~  175 (257)
                      ..-+.++.+..++....|.|++.|...+..                     ..++.|+..++++.  +++.+.+.+... 
T Consensus       162 ~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~--~~~~~~~~~~~~-  238 (307)
T 3ego_A          162 NHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE--NEEKAWERVQAV-  238 (307)
T ss_dssp             CCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHH-
T ss_pred             hhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH-
Confidence            666777777788999999999999866643                     34667777776543  233333222110 


Q ss_pred             CCchhhhccCCcccCCCCCCCcccchHHHHH------------HHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          176 IANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------RLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       176 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                           ..        .   .....+.|+.|+            +.+++.++++|+++|.++.++++++...+
T Consensus       239 -----~~--------~---~~~~~sSM~qD~~~gr~tEid~i~G~vv~~a~~~gv~tP~~~~l~~li~~~e~  294 (307)
T 3ego_A          239 -----CG--------Q---TKENRSSMLVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLYGSIKALER  294 (307)
T ss_dssp             -----HH--------H---TTTCCCHHHHHHHHTCCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTC-
T ss_pred             -----HH--------h---cCCCCchHHHHHHcCCcccHHHhhhHHHHHHHHcCCCCcHHHHHHHHHHHHHh
Confidence                 00        0   001122344443            78999999999999999999999986533

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.72  E-value=2.3e-16  Score=131.60  Aligned_cols=167  Identities=14%  Similarity=0.218  Sum_probs=120.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALS------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|||++++++.+.+.|..  ...++.++ +++|+||+|||+....+.      
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~~~l~~   79 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTLEKLIP   79 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHHHHHGG
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999998887764  56688888 899999999997644333      


Q ss_pred             --------------------HHHhcCCcEEec-cccCC----cccc----ccCcEEEEec---CChhhHHHHHHHHHHhc
Q 025163           73 --------------------AITSKGGHFLEA-PVSGS----KQPA----ETGQLVILSA---GEKALYDEAISALNVIG  120 (257)
Q Consensus        73 --------------------~~~~~g~~~~~~-pv~~~----~~~~----~~~~~~~~~~---g~~~~~~~~~~~l~~~~  120 (257)
                                          .+......++.+ |+.++    +..+    ..+....+..   ++++..+.++++|+.+|
T Consensus        80 ~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g  159 (279)
T 2f1k_A           80 HLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLG  159 (279)
T ss_dssp             GSCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGT
T ss_pred             hCCCCCEEEECCCCcHHHHHHHHHHhCCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcC
Confidence                                111111245554 65532    2221    1343444442   47888999999999999


Q ss_pred             CCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHh
Q 025163          121 KKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLD--PRTLLDVLD  172 (257)
Q Consensus       121 ~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~--~~~~~~~~~  172 (257)
                      .+++++++.....+.|++.|...+... ++.++   +...|.+  .+....++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~  209 (279)
T 2f1k_A          160 VKIYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLAS  209 (279)
T ss_dssp             CEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCC
T ss_pred             CEEEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcC
Confidence            989999888899999999997555444 33333   3345554  444544443

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.72  E-value=3.9e-16  Score=137.68  Aligned_cols=160  Identities=14%  Similarity=0.210  Sum_probs=115.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhH--------HHHHHCCC-------------cccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC--------DELVAHGA-------------TVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~--------~~l~~~g~-------------~~~~~~~~~~~~~dv   59 (257)
                      +||+|||+|.||..||..|+++|++|++||+++++.        +++.+.|.             +.++|++ ++++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            589999999999999999999999999999998843        23444442             3567775 6889999


Q ss_pred             EEEccCChHHHHH----HHH---hcCCc----------------------EEeccccCCccccccCcEEEEecC---Chh
Q 025163           60 TIGMLADPAAALS----AIT---SKGGH----------------------FLEAPVSGSKQPAETGQLVILSAG---EKA  107 (257)
Q Consensus        60 ii~~v~~~~~~~~----~~~---~~g~~----------------------~~~~pv~~~~~~~~~~~~~~~~~g---~~~  107 (257)
                      ||.|||.+...+.    .+.   ..+..                      ++....+.++   ....++.++.+   +++
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~~~~~p~r~iG~HffnPv---~~m~LvEIv~g~~Ts~e  210 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGIHFFNPA---NVIRLVEIIYGSHTSSQ  210 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHTTSSSGGGEEEEECCSST---TTCCEEEEECCSSCCHH
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHHhccCCcceEEEEecchh---hhCCEEEEEeCCCCCHH
Confidence            9999998765543    010   01112                      2222222211   12344555554   789


Q ss_pred             hHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          108 LYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       108 ~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      .++.+.++++.+|+.++++++ ..+.   ++++.+.    ..++|++.++++.|++++++.+++.
T Consensus       211 ~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~----~~~~EA~~l~~~~Ga~~e~ID~a~~  267 (460)
T 3k6j_A          211 AIATAFQACESIKKLPVLVGN-CKSF---VFNRLLH----VYFDQSQKLMYEYGYLPHQIDKIIT  267 (460)
T ss_dssp             HHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHH----HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHH----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            999999999999999999987 4443   3444443    4688999999999999999999987

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.71  E-value=3.6e-16  Score=130.60  Aligned_cols=150  Identities=17%  Similarity=0.212  Sum_probs=113.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCc--ccCCHHHHhh-cCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEVIK-KCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~~-~~dvii~~v~~~~~~~~---   72 (257)
                      |||+|||+|.||..++..|.+.|+  +|++|||++++++.+.+.|+.  ...++.++++ ++|+||+|||.....+.   
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~   81 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAKK   81 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHHH
Confidence            589999999999999999999999  999999999999988888875  3567888888 99999999998765443   


Q ss_pred             -----------------------HHHhc-CCcEEe-ccccCCc----ccc----ccCcEEEEe---cCChhhHHHHHHHH
Q 025163           73 -----------------------AITSK-GGHFLE-APVSGSK----QPA----ETGQLVILS---AGEKALYDEAISAL  116 (257)
Q Consensus        73 -----------------------~~~~~-g~~~~~-~pv~~~~----~~~----~~~~~~~~~---~g~~~~~~~~~~~l  116 (257)
                                             .+... .-.++. .|++++.    ..+    ..+...++.   +++++..+.++++|
T Consensus        82 l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~  161 (281)
T 2g5c_A           82 LSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVW  161 (281)
T ss_dssp             HHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHH
T ss_pred             HHhhCCCCcEEEECCCCcHHHHHHHHHhccccceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHH
Confidence                                   01110 001444 4554422    222    245545565   56888999999999


Q ss_pred             HHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHH
Q 025163          117 NVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTF  150 (257)
Q Consensus       117 ~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~  150 (257)
                      +.+|.+++++++.....+.|++.|....+...++
T Consensus       162 ~~~g~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~  195 (281)
T 2g5c_A          162 EDVGGVVEYMSPELHDYVFGVVSHLPHAVAFALV  195 (281)
T ss_dssp             HHTTCEEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHcCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988888887789999999998766444333

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.69  E-value=1.2e-16  Score=149.04  Aligned_cols=158  Identities=15%  Similarity=0.189  Sum_probs=113.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l-----------~~~g-------------~~~~~~~~~~~~~   56 (257)
                      |||+|||+|.||..||..|+++||+|++||+++++++..           .+.|             ++.++++ +++++
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  393 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN  393 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence            589999999999999999999999999999999987763           2334             3456677 67889


Q ss_pred             CceEEEccCChHHHHH----HHHh---cCCcEEe----------------------ccccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS----AITS---KGGHFLE----------------------APVSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~----~~~~---~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~g---  104 (257)
                      +|+||+|||.+...+.    .+..   .+..+++                      ...+.+   .....++.++.|   
T Consensus       394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~~~~~ig~hf~~P---~~~~~lvevv~g~~t  470 (715)
T 1wdk_A          394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNP---VHMMPLVEVIRGEKS  470 (715)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSS---TTTCCEEEEEECSSC
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHHHhcCccceEEEEccCC---cccCceEEEEECCCC
Confidence            9999999998875543    1111   1222222                      111111   112234444544   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVL  171 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~  171 (257)
                      +++.++.+.++++.+|+.++++++. .+.   ++++.+    ...++|++.++++ |++++++.+++
T Consensus       471 ~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril----~~~~~Ea~~l~~~-G~~~~~id~~~  528 (715)
T 1wdk_A          471 SDLAVATTVAYAKKMGKNPIVVNDC-PGF---LVNRVL----FPYFGGFAKLVSA-GVDFVRIDKVM  528 (715)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESC-TTT---THHHHH----HHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCEeEEEcCC-CCh---hhhHHH----HHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            7899999999999999999999872 332   333333    3568899999997 99999999998

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.69  E-value=4.7e-16  Score=132.83  Aligned_cols=147  Identities=14%  Similarity=0.203  Sum_probs=114.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc----CceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK----CTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~----~dvii~~v~~~~~~~~----   72 (257)
                      |||+|||+|.||..++..|.++|++|++|||++++++.+.+.|+....++.+++++    +|+||+|||.....+.    
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl~~l   88 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLLDAV   88 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999888898887764    7999999996544332    


Q ss_pred             ---------------------HHHhc--CCcEEe-ccccCCc-cc-------cccCcEEEEecC---Chh--------hH
Q 025163           73 ---------------------AITSK--GGHFLE-APVSGSK-QP-------AETGQLVILSAG---EKA--------LY  109 (257)
Q Consensus        73 ---------------------~~~~~--g~~~~~-~pv~~~~-~~-------~~~~~~~~~~~g---~~~--------~~  109 (257)
                                           .+...  +..|+. .|++++. ..       ...+...++.++   +++        .+
T Consensus        89 ~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~  168 (341)
T 3ktd_A           89 HTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIW  168 (341)
T ss_dssp             HHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHH
T ss_pred             HccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHH
Confidence                                 12222  356887 7888764 11       223445566654   456        88


Q ss_pred             HHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHH
Q 025163          110 DEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMM  147 (257)
Q Consensus       110 ~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~  147 (257)
                      +.++++++.+|.+++++++..+...+.++......+..
T Consensus       169 ~~v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~  206 (341)
T 3ktd_A          169 KDVVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAE  206 (341)
T ss_dssp             HHHHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999888888888888776654433

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.69  E-value=3.8e-16  Score=145.83  Aligned_cols=219  Identities=16%  Similarity=0.148  Sum_probs=128.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~   56 (257)
                      |||+|||+|.||..||..|+++||+|++||++++++++..+           .|             ++.++++ +++++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            47999999999999999999999999999999998776422           23             2345677 57889


Q ss_pred             CceEEEccCChHHHHH----HHH---hcCCcEEecc----------------------ccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS----AIT---SKGGHFLEAP----------------------VSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~----~~~---~~g~~~~~~p----------------------v~~~~~~~~~~~~~~~~~g---  104 (257)
                      +|+||+|||.+...+.    .+.   ..+..+.+..                      .+.+   .....++.++.|   
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~~~~~p~~~iG~hf~~P---~~~~~lvevv~g~~t  468 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFFSP---AHIMPLLEIVRTNHT  468 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTTTCSCTTTEEEEEECSS---TTTCCEEEEEECSSC
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHHHhcCCCCEEEecCCCC---cccCceEEEEECCCC
Confidence            9999999998875543    111   1222232221                      1111   112234455555   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhcc
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGK  184 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~  184 (257)
                      +++.++.+.++++.+|+.++++++. .+.   ++++.+    ...++|++.++++ |++++++.+++ .+.+. |+    
T Consensus       469 ~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril----~~~~~Ea~~l~~~-G~~~e~id~~~-~~~g~-p~----  533 (725)
T 2wtb_A          469 SAQVIVDLLDVGKKIKKTPVVVGNC-TGF---AVNRMF----FPYTQAAMFLVEC-GADPYLIDRAI-SKFGM-PM----  533 (725)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEEESS-TTT---THHHHH----HHHHHHHHHHHHT-TCCHHHHHHHH-HHHTC-SS----
T ss_pred             CHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHH----HHHHHHHHHHHHC-CCCHHHHHHHH-HHcCC-CC----
Confidence            7899999999999999999999872 332   233333    3568999999998 99999999998 43232 11    


Q ss_pred             CCcccCCCCCCCcccchHHHHHHHHHHHHhhc-CCCchHHHHHHHHHHHHHHcCCCCCcH
Q 025163          185 GPTMLQSNYAPAFPLKHQQKDMRLALALGDEN-AVSMPIAAAANEAFKKARSLGLGDNDF  243 (257)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~-g~~~p~~~~~~~~~~~~~~~g~~~~d~  243 (257)
                      +|.-+ -|.   ..++...+-.+.+.+...+. -.| |+++..++.-+.+.+.|.|..+|
T Consensus       534 Gp~~l-~D~---vGld~~~~i~~~~~~~~~~~~~~~-~~l~~~v~~g~lG~k~g~GfY~y  588 (725)
T 2wtb_A          534 GPFRL-CDL---VGFGVAIATATQFIENFSERTYKS-MIIPLMQEDKRAGEATRKGFYLY  588 (725)
T ss_dssp             CHHHH-HHH---HCHHHHHHHHHHHHHHSGGGCCCC-THHHHHHTTC-------------
T ss_pred             CHHHH-HHH---hchHHHHHHHHHHHHhcCCccCCh-HHHHHHHHCCCceecCCceeEeC
Confidence            11000 011   11333333333333322222 123 66666665555666667776666

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=99.51  E-value=2.2e-18  Score=137.11  Aligned_cols=136  Identities=18%  Similarity=0.288  Sum_probs=103.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||..++..|.+.|++|++|+|+++ .+.+...|+... ++.++++++|+||+|||.......        
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~~~~~~v~~l~~~~~   97 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHREHYDFLAELADSLK   97 (201)
Confidence            6899999999999999999999999999999987 566666677666 788888999999999997643221        


Q ss_pred             ----HHHhcC----------CcEEeccccCCcc----------ccccCcE-----EEEecCChhhHHHHHHHHHHhcCCe
Q 025163           73 ----AITSKG----------GHFLEAPVSGSKQ----------PAETGQL-----VILSAGEKALYDEAISALNVIGKKA  123 (257)
Q Consensus        73 ----~~~~~g----------~~~~~~pv~~~~~----------~~~~~~~-----~~~~~g~~~~~~~~~~~l~~~~~~~  123 (257)
                          .-...|          ..+++.++.+...          ....+.+     .++.+++++.++.++++|+.+|.++
T Consensus        98 ~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~  177 (201)
T 2yjz_A           98 GRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLGLTP  177 (201)
Confidence                000112          2556655544322          2222332     4667788889999999999999999


Q ss_pred             EEeCCCChHHHHHHH
Q 025163          124 FFLGEVGNGAKMKLV  138 (257)
Q Consensus       124 ~~~g~~g~a~~~kl~  138 (257)
                      +++|+++.+.++|.+
T Consensus       178 ~~~G~l~~a~~~e~~  192 (201)
T 2yjz_A          178 LDQGSLVAAKEIENY  192 (201)
Confidence            999999999999864

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.68  E-value=3e-16  Score=125.64  Aligned_cols=145  Identities=19%  Similarity=0.305  Sum_probs=108.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-C-------CcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-------ATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g-------~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+||| +|.||..++..|.++|++|++++|++++.+.+.+. +       +. ..++.++++++|+||+|+|.....+
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIPWEHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSCHHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCChhhHHH
Confidence            8999999 99999999999999999999999999988877653 3       33 3577788899999999999765433


Q ss_pred             H--HHHh--cCC-----------------------------------cEEec--cccCCcccc--ccCcEEEEecCC-hh
Q 025163           72 S--AITS--KGG-----------------------------------HFLEA--PVSGSKQPA--ETGQLVILSAGE-KA  107 (257)
Q Consensus        72 ~--~~~~--~g~-----------------------------------~~~~~--pv~~~~~~~--~~~~~~~~~~g~-~~  107 (257)
                      .  .+..  .+.                                   .++++  |+.+.....  ..+.+.++++|+ ++
T Consensus        80 ~~~~l~~~~~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  159 (212)
T 1jay_A           80 TARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDE  159 (212)
T ss_dssp             HHHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHH
T ss_pred             HHHHHHHHcCCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeEEEEccchHHHHhhCcCCCCCccEEEECCcHH
Confidence            2  0000  122                                   23332  222111111  334466677775 88


Q ss_pred             hHHHHHHHHHHh-cCCeEEeCCCChHHHHHHHHHHHHHHH
Q 025163          108 LYDEAISALNVI-GKKAFFLGEVGNGAKMKLVVNMIMGCM  146 (257)
Q Consensus       108 ~~~~~~~~l~~~-~~~~~~~g~~g~a~~~kl~~n~~~~~~  146 (257)
                      .++.++++|+.+ |.+++++++.+.+.++|.+.|++....
T Consensus       160 ~~~~v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~  199 (212)
T 1jay_A          160 SKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIM  199 (212)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHH
Confidence            899999999999 999899999999999999999887644

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.66  E-value=2.1e-15  Score=127.09  Aligned_cols=153  Identities=14%  Similarity=0.216  Sum_probs=110.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+||| +|.||..++..|.+.|++|++|||+++.             ++.++++++|+||+|||.....+.       
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~~~~~~vl~~l~~~   88 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPINLTLETIERLKPY   88 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCHHHHHHHHHHHHhh
Confidence            4899999 9999999999999999999999998652             567788899999999998765443       


Q ss_pred             --------------------HHHhcCCcEEe-ccccCCccccccCcEEEEec-CChhhHHHHHHHHHHhcCCeEEeCCCC
Q 025163           73 --------------------AITSKGGHFLE-APVSGSKQPAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGEVG  130 (257)
Q Consensus        73 --------------------~~~~~g~~~~~-~pv~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~g~~g  130 (257)
                                          .....+..++. .|++++......+...++.. .+++.++.++++|+.+|.+++++++..
T Consensus        89 l~~~~iv~~~~svk~~~~~~~~~~~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~  168 (298)
T 2pv7_A           89 LTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATE  168 (298)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHH
T ss_pred             cCCCcEEEECCCCCcHHHHHHHHhcCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHH
Confidence                                11112345665 47777665555565445543 378888999999999999888888777


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 025163          131 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV  170 (257)
Q Consensus       131 ~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~  170 (257)
                      ...+.+++.+....+... +.+++   .+.|++.+...++
T Consensus       169 ~d~~~a~~~~~p~~~a~~-l~~~l---~~~g~~~~~~~~l  204 (298)
T 2pv7_A          169 HDHNMTYIQALRHFSTFA-NGLHL---SKQPINLANLLAL  204 (298)
T ss_dssp             HHHHHHHHTHHHHHHHHH-HHHHH---TTSSCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHH---HhcCCCHHHHHhh
Confidence            788888888875543333 23332   2367766554443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.66  E-value=2.4e-16  Score=131.48  Aligned_cols=166  Identities=12%  Similarity=0.146  Sum_probs=110.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      |||+|||+|.||..++..|.++ ++| .+|||++++.+++.+ .|. ...+++++++++|+||+|||+....+.  .+..
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~~~~~v~~~l~~   80 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDRYIKTVANHLNL   80 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTTTHHHHHTTTCC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChHHHHHHHHHhcc
Confidence            6899999999999999999998 999 599999999988864 466 667788888899999999999875443  1111


Q ss_pred             cCCcEEe---------------------ccccCCccccc-cCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChH--
Q 025163           77 KGGHFLE---------------------APVSGSKQPAE-TGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNG--  132 (257)
Q Consensus        77 ~g~~~~~---------------------~pv~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a--  132 (257)
                      .+..+++                     .++++++.... ...+.++++++++.++.++++++.+|.+++++++.+..  
T Consensus        81 ~~~ivi~~s~~~~~~~l~~~~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~~  160 (276)
T 2i76_A           81 GDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKAY  160 (276)
T ss_dssp             SSCCEEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCGGGHHHH
T ss_pred             CCCEEEECCCCCcHHHHHHhhccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEECHHHHHHH
Confidence            2222222                     12333232222 34445777788888999999999999889999864332  


Q ss_pred             -HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHh
Q 025163          133 -AKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPR--TLLDVLD  172 (257)
Q Consensus       133 -~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~--~~~~~~~  172 (257)
                       ...+++.|.+.    ..+.|+..++++.|++.+  .+.+++.
T Consensus       161 ~~~~~l~~n~~~----~~~~~a~~~~~~~Gl~~~~a~~~~l~~  199 (276)
T 2i76_A          161 HLAAVIASNFPV----ALAYLSKRIYTLLGLDEPELLIHTLMK  199 (276)
T ss_dssp             HHHHHHHHTTHH----HHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence             23356666443    456788888999999987  4444443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.63  E-value=9.2e-16  Score=123.70  Aligned_cols=136  Identities=12%  Similarity=0.190  Sum_probs=99.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEE-EcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AIT-   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~-~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~-   75 (257)
                      |||+|||+|+||.+++..|.++|++|++ |+|++++++++.+. |.....+..+.++++|+||+|||.....+.  .+. 
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~  103 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSIADIVTQVSD  103 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGHHHHHTTCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHHHHHHHHhhc
Confidence            6899999999999999999999999999 99999999988754 776666667778999999999997655443  100 


Q ss_pred             hcCCcEEe--ccc---------------------------------------cC-CccccccCcEEEEecCChhhHHHHH
Q 025163           76 SKGGHFLE--APV---------------------------------------SG-SKQPAETGQLVILSAGEKALYDEAI  113 (257)
Q Consensus        76 ~~g~~~~~--~pv---------------------------------------~~-~~~~~~~~~~~~~~~g~~~~~~~~~  113 (257)
                      ..+..+++  .|+                                       .. ++.....+...++.+.+++..+.++
T Consensus       104 ~~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~  183 (220)
T 4huj_A          104 WGGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGAKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVA  183 (220)
T ss_dssp             CTTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTCEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCCCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHH
Confidence            11222222  111                                       11 1111111223455666889999999


Q ss_pred             HHHHHhcCCeEEeCCCChHHHHH
Q 025163          114 SALNVIGKKAFFLGEVGNGAKMK  136 (257)
Q Consensus       114 ~~l~~~~~~~~~~g~~g~a~~~k  136 (257)
                      ++++.+|.+++++|+++.+.++.
T Consensus       184 ~l~~~~G~~~~~~G~l~~a~~~~  206 (220)
T 4huj_A          184 ELISSLGFAPVDLGTLAASGPIQ  206 (220)
T ss_dssp             HHHHHTTCEEEECCSHHHHHHHH
T ss_pred             HHHHHhCCCeEeeCChhhcchhh
Confidence            99999999999999988776643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.61  E-value=1.2e-15  Score=122.55  Aligned_cols=138  Identities=15%  Similarity=0.199  Sum_probs=102.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH----HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS----AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~----~~~~   76 (257)
                      |||+|||+|.||..++..|.+.|++|++++|++++.+.+.+.|+... +..++++++|+||+|+|.......    ... 
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~~~~~~v~~l~~~~-  106 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFREHYSSLCSLSDQL-  106 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCGGGSGGGGGGHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCChHHHHHHHHHHHhc-
Confidence            68999999999999999999999999999999999998887787766 788888999999999996432111    011 


Q ss_pred             cCCcEEecc---------------------ccCC--------------ccccccCc-EEEEecCChhhHHHHHHHHHHhc
Q 025163           77 KGGHFLEAP---------------------VSGS--------------KQPAETGQ-LVILSAGEKALYDEAISALNVIG  120 (257)
Q Consensus        77 ~g~~~~~~p---------------------v~~~--------------~~~~~~~~-~~~~~~g~~~~~~~~~~~l~~~~  120 (257)
                      .+..+++..                     +.+.              ......+. ..++.+++++.++.++++|+.+|
T Consensus       107 ~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G  186 (215)
T 2vns_A          107 AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMG  186 (215)
T ss_dssp             TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcC
Confidence            232333211                     1000              00111122 35677789999999999999999


Q ss_pred             CCeEEeCCCChHHHHHHHHH
Q 025163          121 KKAFFLGEVGNGAKMKLVVN  140 (257)
Q Consensus       121 ~~~~~~g~~g~a~~~kl~~n  140 (257)
                      .+++++|+++.+.+++...+
T Consensus       187 ~~~~~~g~~~~~~~~e~~~~  206 (215)
T 2vns_A          187 FMPVDMGSLASAWEVEAMPL  206 (215)
T ss_dssp             CEEEECCSGGGHHHHHHSCC
T ss_pred             CceEeecchhhhhHhhhhhh
Confidence            99999999999999885433

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.61  E-value=8.4e-15  Score=130.45  Aligned_cols=159  Identities=19%  Similarity=0.319  Sum_probs=110.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-----------CcccCCHHHHhhcCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-----------ATVGGSPAEVIKKCT   58 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-----------~~~~~~~~~~~~~~d   58 (257)
                      |||+|||+|.||..||..|+++|++|++||+++++++...+           .|           ...++++ +.++++|
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aD  116 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVD  116 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCC
Confidence            57999999999999999999999999999999988776533           11           1345566 5678999


Q ss_pred             eEEEccCChHHHHH----HHH---hcCCcEEe----------------------ccccCCccccccCcEEEEec---CCh
Q 025163           59 ITIGMLADPAAALS----AIT---SKGGHFLE----------------------APVSGSKQPAETGQLVILSA---GEK  106 (257)
Q Consensus        59 vii~~v~~~~~~~~----~~~---~~g~~~~~----------------------~pv~~~~~~~~~~~~~~~~~---g~~  106 (257)
                      +||+|||.......    .+.   ..+..+++                      .+.+.+   .....++.++.   +++
T Consensus       117 lVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~~~~~~~~~ig~hf~~P---~~~~~lvevv~g~~t~~  193 (463)
T 1zcj_A          117 LVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSP---AHVMRLLEVIPSRYSSP  193 (463)
T ss_dssp             EEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSS---TTTCCEEEEEECSSCCH
T ss_pred             EEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHHHhcCCcceEEeecCCC---cccceeEEEeCCCCCCH
Confidence            99999998754333    111   11222322                      111111   11223344444   478


Q ss_pred             hhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          107 ALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       107 ~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +.++.++++++.+|+.++++++ ..+.   ++++.+ .   ..+.|++.++++ |++++++.+++.
T Consensus       194 e~~~~~~~l~~~lGk~~v~v~~-~~gf---i~Nrll-~---~~~~ea~~l~~~-G~~~~~id~~~~  250 (463)
T 1zcj_A          194 TTIATVMSLSKKIGKIGVVVGN-CYGF---VGNRML-A---PYYNQGFFLLEE-GSKPEDVDGVLE  250 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEEEBCC-STTT---THHHHH-H---HHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCEEEEECC-CccH---HHHHHH-H---HHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            9999999999999999999987 2333   233322 2   245899999887 899999999887

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.59  E-value=2.8e-14  Score=119.65  Aligned_cols=129  Identities=16%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCC--cccCCHHHHhhcCceEEEccCChHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALS----   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~----   72 (257)
                      |||+|||+|.||..++..|.++  |++|++|||++++.+.+.+.|.  ....++.++++++|+||+|||.....+.    
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~~l   86 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFIKIL   86 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHHHHH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHHHHH
Confidence            6899999999999999999988  6899999999999999888886  3567888888999999999998765332    


Q ss_pred             -----------------------HHH---h-cCCcEEe-ccccC----Cccccc----cCcEEEEe---cCChhhHHHHH
Q 025163           73 -----------------------AIT---S-KGGHFLE-APVSG----SKQPAE----TGQLVILS---AGEKALYDEAI  113 (257)
Q Consensus        73 -----------------------~~~---~-~g~~~~~-~pv~~----~~~~~~----~~~~~~~~---~g~~~~~~~~~  113 (257)
                                             .+.   . .+..++. .|+++    ++..+.    .+...++.   +++++.++.++
T Consensus        87 ~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~  166 (290)
T 3b1f_A           87 ADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQ  166 (290)
T ss_dssp             HTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHH
T ss_pred             HhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHH
Confidence                                   011   1 1445555 45543    222222    44433333   46788899999


Q ss_pred             HHHHHhcCCeEEeCCC
Q 025163          114 SALNVIGKKAFFLGEV  129 (257)
Q Consensus       114 ~~l~~~~~~~~~~g~~  129 (257)
                      ++|+.+|.+++++++.
T Consensus       167 ~l~~~~G~~~~~~~~~  182 (290)
T 3b1f_A          167 DLLSGLHARYVEIDAA  182 (290)
T ss_dssp             HHTGGGCCEEEECCHH
T ss_pred             HHHHHcCCEEEEcCHH
Confidence            9999999988777753

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.55  E-value=1.8e-14  Score=115.13  Aligned_cols=125  Identities=23%  Similarity=0.214  Sum_probs=87.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--H---HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--A---IT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~---~~   75 (257)
                      |||+|||+|.||.+++..|.++|++|++|||+++                  +++++|+||+|||+....+.  .   ..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~~~~~~~v~~~l~~~~   81 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVPYPALAALAKQYATQL   81 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSCHHHHHHHHHHTHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCCcHHHHHHHHHHHHhc
Confidence            7899999999999999999999999999999866                  34567788888774332222  0   01


Q ss_pred             hcCCcEEe------------------------------------------ccccCCccccccCcEEEEecC-ChhhHHHH
Q 025163           76 SKGGHFLE------------------------------------------APVSGSKQPAETGQLVILSAG-EKALYDEA  112 (257)
Q Consensus        76 ~~g~~~~~------------------------------------------~pv~~~~~~~~~~~~~~~~~g-~~~~~~~~  112 (257)
                      . +..+++                                          +|.++.......+...+++++ +++..+.+
T Consensus        82 ~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v  160 (209)
T 2raf_A           82 K-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRF  160 (209)
T ss_dssp             T-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTTSEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHH
T ss_pred             C-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCCCcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHH
Confidence            1 322332                                          222111111111233444454 56889999


Q ss_pred             HHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163          113 ISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus       113 ~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      +++|+.+|.+++++++++.+.++|.+.|.+..
T Consensus       161 ~~ll~~~G~~~~~~~~i~~a~~~K~i~~l~~~  192 (209)
T 2raf_A          161 TRALADSPLEVKDAGKLKRARELEAMGFMQMT  192 (209)
T ss_dssp             HHHTTTSSCEEEEEESGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCceEeCCCHhHHHHhcchHHHHHH
Confidence            99999999999999999999999999887643

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.53  E-value=9.4e-14  Score=117.18  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=120.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-----------HCC--------------CcccCCHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG--------------ATVGGSPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-----------~~g--------------~~~~~~~~~~~~~   56 (257)
                      ||+|||+|.||..+|..++.+|++|++||++++.+++..           +.|              +..++++.|++++
T Consensus         8 ~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~   87 (319)
T 3ado_A            8 DVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEG   87 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTT
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhcc
Confidence            799999999999999999999999999999988654421           222              2346788899999


Q ss_pred             CceEEEccCChHHHHH--------------------------HHHh---cCCcEEeccccCCccccccCcEEEEecC---
Q 025163           57 CTITIGMLADPAAALS--------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILSAG---  104 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~--------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~~g---  104 (257)
                      +|+|+-|||..-..+.                          .+..   +.-.++..+.+-++...   .++-++.+   
T Consensus        88 ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~~~~p~r~ig~HffNP~~~m---~LVEiv~g~~T  164 (319)
T 3ado_A           88 VVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPYYI---PLVELVPHPET  164 (319)
T ss_dssp             EEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTTCTTGGGEEEEEECSSTTTC---CEEEEEECTTC
T ss_pred             CcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhhccCCCcEEEecCCCCcccc---chHHhcCCCCC
Confidence            9999999999888776                          1111   11223333333333222   34445544   


Q ss_pred             ChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCC
Q 025163          105 EKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIA  177 (257)
Q Consensus       105 ~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~  177 (257)
                      +++.++.+.++++.+|++++.+.....+....       .+....+.|++.+.+....+++++..++..+.+.
T Consensus       165 s~~~~~~~~~~~~~~gk~pv~v~kd~pGFi~N-------Rl~~~~~~EA~~lv~eGvas~edID~~~~~g~g~  230 (319)
T 3ado_A          165 SPATVDRTHALMRKIGQSPVRVLKEIDGFVLN-------RLQYAIISEAWRLVEEGIVSPSDLDLVMSDGLGM  230 (319)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEECSSCCTTTTHH-------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTHHH
T ss_pred             cHHHHHHHHHHHHHhCCccCCcCCCCCCEeHH-------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence            67889999999999998877554334454433       2345677899999999999999999999876544

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.50  E-value=4.9e-13  Score=114.47  Aligned_cols=164  Identities=18%  Similarity=0.202  Sum_probs=106.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHH----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAIT----   75 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~----   75 (257)
                      |||+|||+|.||.++|..|.+.|++|++|+|++++ .+...+.|+... ++.++++++|+||+|||+...... +.    
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~~~~~~v-~~~~i~   94 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL-YKEEIE   94 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH-HHHHTG
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCcHHHHHH-HHHHHH
Confidence            68999999999999999999999999999999876 566667788766 888999999999999998765332 11    


Q ss_pred             h---cCCcEE---------------------e-ccccCCccc------cccCcEEEEe---cCChhhHHHHHHHHHHhcC
Q 025163           76 S---KGGHFL---------------------E-APVSGSKQP------AETGQLVILS---AGEKALYDEAISALNVIGK  121 (257)
Q Consensus        76 ~---~g~~~~---------------------~-~pv~~~~~~------~~~~~~~~~~---~g~~~~~~~~~~~l~~~~~  121 (257)
                      .   .+..++                     . .| .++...      ...+...++.   ..+++..+.++++++.+|.
T Consensus        95 ~~l~~~~ivi~~~gv~~~~~~~~~~~~~~vv~~~P-~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~  173 (338)
T 1np3_A           95 PNLKKGATLAFAHGFSIHYNQVVPRADLDVIMIAP-KAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGG  173 (338)
T ss_dssp             GGCCTTCEEEESCCHHHHTTSSCCCTTCEEEEEEE-SSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTH
T ss_pred             hhCCCCCEEEEcCCchhHHHhhcCCCCcEEEeccC-CCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            0   122222                     1 22 111110      1113323322   2357788899999999997


Q ss_pred             -C--eEEeCCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 025163          122 -K--AFFLGEVGNGAKMKLVVN-MIMGCMMNTFSEGLVLAEKSGLDPRTL  167 (257)
Q Consensus       122 -~--~~~~g~~g~a~~~kl~~n-~~~~~~~~~~~E~~~l~~~~g~~~~~~  167 (257)
                       +  ++.+..........++.+ .+.......+..++..+.+.|++++..
T Consensus       174 ~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          174 GRTGIIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             HHHCEEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             CccceEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence             4  555543223333344434 222333444445555566789887644

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.49  E-value=1.8e-12  Score=113.57  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCeEEEEc---CCchhHHHH-HHCC---------C----------cccCCHHHHhhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLR-NGFKVTVWN---RTLSKCDEL-VAHG---------A----------TVGGSPAEVIKK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~-~g~~V~~~~---r~~~~~~~l-~~~g---------~----------~~~~~~~~~~~~   56 (257)
                      |||+|||+|.||+.+|..|++ +|++|++|+   |++++++.+ ++.|         .          ..++++++++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            699999999999999999998 599999999   888888874 4333         1          145678888899


Q ss_pred             CceEEEccCChHHHHH
Q 025163           57 CTITIGMLADPAAALS   72 (257)
Q Consensus        57 ~dvii~~v~~~~~~~~   72 (257)
                      +|+||+|||+....+.
T Consensus        83 aD~Vilav~~~~~~~v   98 (404)
T 3c7a_A           83 ADVVILTVPAFAHEGY   98 (404)
T ss_dssp             CSEEEECSCGGGHHHH
T ss_pred             CCEEEEeCchHHHHHH
Confidence            9999999998876544

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.47  E-value=4.3e-13  Score=107.95  Aligned_cols=129  Identities=12%  Similarity=0.125  Sum_probs=89.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||+|||+|.||+.|+..|.++||+|++|++.                  ++ ++++|  |+|||+....+.        
T Consensus         7 mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~ai~~vl~~l~~~l   65 (232)
T 3dfu_A            7 LRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAHGVEGYVEKLSAFA   65 (232)
T ss_dssp             CEEEEECCSCCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSSCHHHHHHHHHTTC
T ss_pred             cEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHHHHHHHHHHHHHhc
Confidence            79999999999999999999999999999983                  11 35567  667776644332        


Q ss_pred             -------------------HHHhcCCcEEe-ccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           73 -------------------AITSKGGHFLE-APVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        73 -------------------~~~~~g~~~~~-~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                                         .....|..|+. .|+++.        ...+.+++++.++.++++++.+|.+++.+++..+.
T Consensus        66 ~~g~ivvd~sgs~~~~vl~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~~~hd  137 (232)
T 3dfu_A           66 RRGQMFLHTSLTHGITVMDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGSIVEIADDKRA  137 (232)
T ss_dssp             CTTCEEEECCSSCCGGGGHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCEECCCCGGGHH
T ss_pred             CCCCEEEEECCcCHHHHHHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCEEEEeCHHHHh
Confidence                               23344555553 555432        23445568888999999999999999998875555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 025163          133 AKMKLVVNMIMGCMMNTFSEGLVLAEKS  160 (257)
Q Consensus       133 ~~~kl~~n~~~~~~~~~~~E~~~l~~~~  160 (257)
                      ...  +.-...+.+..+..++..++++.
T Consensus       138 ~~~--AAvsh~nhLv~L~~~A~~ll~~~  163 (232)
T 3dfu_A          138 QLA--AALTYAGFLSTLQRDASYFLDEF  163 (232)
T ss_dssp             HHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            442  11222455566777777777554

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.30  E-value=9.2e-11  Score=102.90  Aligned_cols=170  Identities=18%  Similarity=0.190  Sum_probs=103.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC------CCeEEEEcCCc-hhHHHHHHCCCcc----cCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN------GFKVTVWNRTL-SKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~------g~~V~~~~r~~-~~~~~l~~~g~~~----~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|||+|+||.++|++|.+.      |++|++++|+. ...+...+.|+..    ..++.|+++++|+||++||+...
T Consensus        55 KkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~  134 (525)
T 3fr7_A           55 KQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ  134 (525)
T ss_dssp             SEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHH
T ss_pred             CEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHH
Confidence            5899999999999999999999      99988776654 4455666778876    36899999999999999998766


Q ss_pred             HHH-----------------------HHHh------cCCcEEe-ccccCCcc-------c---cccCcE-EEEecC--Ch
Q 025163           70 ALS-----------------------AITS------KGGHFLE-APVSGSKQ-------P---AETGQL-VILSAG--EK  106 (257)
Q Consensus        70 ~~~-----------------------~~~~------~g~~~~~-~pv~~~~~-------~---~~~~~~-~~~~~g--~~  106 (257)
                      .+.                       .+..      .++.++. +|...+..       .   ...|.. .+-+..  +.
T Consensus       135 ~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tg  214 (525)
T 3fr7_A          135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG  214 (525)
T ss_dssp             HHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSS
T ss_pred             HHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCH
Confidence            443                       1121      1233322 44332221       0   012322 223333  34


Q ss_pred             hhHHHHHHHHHHhcCCeEEeCCCChHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 025163          107 ALYDEAISALNVIGKKAFFLGEVGNGAKMKLV--VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDV  170 (257)
Q Consensus       107 ~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~--~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~  170 (257)
                      +..+.+..++..+|...+.-.........++.  ...+.....+++.-++..+.+.|++++..+..
T Consensus       215 ea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtvLsG~~pAlieA~~d~lVe~G~~pe~Ay~~  280 (525)
T 3fr7_A          215 RATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLGAVHGIVEALFRRYTEQGMDEEMAYKN  280 (525)
T ss_dssp             CHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhhhcCcHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            77889999999999763222221111111121  11122333344444555578899998755543

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=99.25  E-value=6.7e-13  Score=107.98  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=54.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeE-EEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||..+++.|.+.|++| .+||+++ +.++       ...|+++++ .++|+|++|+|+....+.
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~~~~~~   66 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQAVKDY   66 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHHHHHHH
Confidence            89999999999999999999999997 7899985 3221       677899988 689999999998866655

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.23  E-value=1.1e-13  Score=117.15  Aligned_cols=67  Identities=19%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CC-eEEEEcCCchhHHHHHHC-C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH-G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~-~V~~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |+|+|||+|.||..++..|.+. |+ +|.+|||++++.+++.+. +  +..+.+++++++++|+|++|+|..
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~  207 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT  207 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC
Confidence            5899999999999999999886 76 899999999999998765 5  677889999999999999999964

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.10  E-value=1.7e-09  Score=100.89  Aligned_cols=158  Identities=18%  Similarity=0.271  Sum_probs=108.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----------------------CCcccCCHHHHhhcCce
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----------------------GATVGGSPAEVIKKCTI   59 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----------------------g~~~~~~~~~~~~~~dv   59 (257)
                      ||+|||+|.||..||..++.+|++|+++|++++.+++..+.                      .+...++.+ .++++|+
T Consensus       318 ~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aDl  396 (742)
T 3zwc_A          318 SVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTVDL  396 (742)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSCSE
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhCCE
Confidence            79999999999999999999999999999998865543220                      123444554 4679999


Q ss_pred             EEEccCChHHHHH--------------------------HHH---hcCCcEEeccccCCccccccCcEEEEecC---Chh
Q 025163           60 TIGMLADPAAALS--------------------------AIT---SKGGHFLEAPVSGSKQPAETGQLVILSAG---EKA  107 (257)
Q Consensus        60 ii~~v~~~~~~~~--------------------------~~~---~~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~~~  107 (257)
                      ||-+|+..-..+.                          .+.   .+.-.++..+.+.++..   -.++-++.+   +++
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~~~~p~r~ig~HFfnP~~~---m~LVEvi~g~~Ts~e  473 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGTHFFSPAHV---MRLLEVIPSRYSSPT  473 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEECCSSTTT---CCEEEEEECSSCCHH
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhhcCCccccccccccCCCCC---CceEEEecCCCCCHH
Confidence            9999999888776                          111   01122333343433322   234444443   688


Q ss_pred             hHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          108 LYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       108 ~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      +++.+.++.+.+++.++.+.+ ..+...+-       +....+.|++.+.+. |.+++++.+++.
T Consensus       474 ~~~~~~~~~~~lgK~pV~vkd-~pGFi~NR-------i~~~~~~ea~~l~~e-G~~~~~id~a~~  529 (742)
T 3zwc_A          474 TIATVMSLSKKIGKIGVVVGN-CYGFVGNR-------MLAPYYNQGFFLLEE-GSKPEDVDGVLE  529 (742)
T ss_dssp             HHHHHHHHHHHTTCEEEECCC-STTTTHHH-------HHHHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcccCC-CCCccHHH-------HhhHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            899999999999999888876 44544333       234566688777765 677777766654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.03  E-value=4.1e-10  Score=95.92  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=60.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|+|||+|.||..+|+.|...|++|++|||++++.+.+.+.|+... +++++++++|+|++|+|....
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChH
Confidence            68999999999999999999999999999999887777766677666 899999999999999997643

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.01  E-value=3.5e-10  Score=84.64  Aligned_cols=86  Identities=15%  Similarity=0.208  Sum_probs=66.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChHHHHH-HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAAALS-AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~-~~~~   76 (257)
                      ++|+|||+|.||..++..|.+.|++|++|+|++++.+.+.+. |..  ...+..++++++|+||.|+|.+..... ..-.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~~~~~~~l~  101 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTPIVEERSLM  101 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSCSBCGGGCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCcEeeHHHcC
Confidence            589999999999999999999999999999999999887653 543  456888889999999999997632111 1112


Q ss_pred             cCCcEEeccc
Q 025163           77 KGGHFLEAPV   86 (257)
Q Consensus        77 ~g~~~~~~pv   86 (257)
                      .|..+++..+
T Consensus       102 ~g~~vid~~~  111 (144)
T 3oj0_A          102 PGKLFIDLGN  111 (144)
T ss_dssp             TTCEEEECCS
T ss_pred             CCCEEEEccC
Confidence            3556666443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.01  E-value=2.7e-09  Score=76.50  Aligned_cols=82  Identities=20%  Similarity=0.274  Sum_probs=62.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|.|+|+|.||..++..|.+.| ++|++++|++++.+.+...++...       .+..++++++|+||.|+|.......
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~~~~~   85 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFLTPII   85 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGGHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchhhHHH
Confidence            47999999999999999999999 999999999999988876554321       2344566789999999986654332


Q ss_pred             --HHHhcCCcEE
Q 025163           73 --AITSKGGHFL   82 (257)
Q Consensus        73 --~~~~~g~~~~   82 (257)
                        .....|..++
T Consensus        86 ~~~~~~~g~~~~   97 (118)
T 3ic5_A           86 AKAAKAAGAHYF   97 (118)
T ss_dssp             HHHHHHTTCEEE
T ss_pred             HHHHHHhCCCEE
Confidence              3444555553

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.00  E-value=7.2e-10  Score=94.84  Aligned_cols=69  Identities=19%  Similarity=0.237  Sum_probs=62.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|||||+|.||..+|+.|...|++|++|||++...+...+.|+....+++++++++|+|++++|....
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~  233 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEK  233 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTT
T ss_pred             CEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHH
Confidence            589999999999999999999999999999998777777777888888999999999999999996533

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=98.99  E-value=8.1e-10  Score=94.70  Aligned_cols=69  Identities=19%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|. ..|++|++|||++++.+...+.|+....+++++++++|+|++|+|....
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~  233 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKL  233 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGG
T ss_pred             CEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChH
Confidence            58999999999999999999 9999999999998877666666777767899999999999999998654

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=98.98  E-value=9.9e-10  Score=93.69  Aligned_cols=67  Identities=15%  Similarity=0.275  Sum_probs=58.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|+|||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++|+|....
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~  217 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRE  217 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTT
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChH
Confidence            58999999999999999999999999999999887 5555557655 4888999999999999998753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.97  E-value=5.4e-09  Score=77.23  Aligned_cols=70  Identities=17%  Similarity=0.294  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc-c---CCHHHH----hhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV-G---GSPAEV----IKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~-~---~~~~~~----~~~~dvii~~v~~~~~~   70 (257)
                      |+|.|+|+|.+|..++..|.+.|++|+++|+++++++.+.+. |... .   .+...+    ++++|+||+|+|++...
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            799999999999999999999999999999999998888753 6532 1   123221    46899999999987543

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.96  E-value=1e-09  Score=91.14  Aligned_cols=68  Identities=31%  Similarity=0.418  Sum_probs=60.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |+|+|||+|.||.+++..|.+.|++|++|||++++.+++.+. |+....++.++++++|+||.|+|...
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~  198 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGL  198 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTS
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCC
Confidence            589999999999999999999999999999999999888754 66666688888899999999999874

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.94  E-value=1.6e-09  Score=92.77  Aligned_cols=68  Identities=21%  Similarity=0.291  Sum_probs=60.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++ +.+...+.|+....+++++++++|+|++++|....
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~  228 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN-SKERARADGFAVAESKDALFEQSDVLSVHLRLNDE  228 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH-HHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTT
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC-CHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHH
Confidence            589999999999999999999999999999985 44556677888888999999999999999997644

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.94  E-value=1.6e-09  Score=91.76  Aligned_cols=68  Identities=13%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r-~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++||| ++++ +...+.|+....+++++++++|+|++|+|....
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~  215 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPE  215 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchH
Confidence            5799999999999999999999999999999 8776 344556777666899999999999999997643

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.94  E-value=1.3e-09  Score=92.82  Aligned_cols=66  Identities=30%  Similarity=0.400  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |+|+|||+|.||..+|+.|...|++|++|||++++ +...+.|+... +++++++++|+|++|+|...
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~  212 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTR  212 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCCh
Confidence            58999999999999999999999999999999876 44445576554 88899999999999999874

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.94  E-value=1.6e-09  Score=92.25  Aligned_cols=67  Identities=25%  Similarity=0.417  Sum_probs=52.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|||||+|.||..+|++|...|++|.+|||++++     ..+.....+++|+++++|+|++++|.......
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~  238 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQN  238 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC--------
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHH
Confidence            58999999999999999999999999999998765     23555667999999999999999996655443

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.93  E-value=5.2e-09  Score=81.34  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=59.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCccc----CCH---HHH--hhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG----GSP---AEV--IKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~----~~~---~~~--~~~~dvii~~v~~~~~~   70 (257)
                      ++|.|+|+|.||..+++.|.+. |++|+++|+++++++.+.+.|....    ++.   .++  ++++|+||+|+|++...
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~  119 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGN  119 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHH
Confidence            4799999999999999999999 9999999999999999988886532    232   233  56789999999987654


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      ..
T Consensus       120 ~~  121 (183)
T 3c85_A          120 QT  121 (183)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=98.93  E-value=1.2e-09  Score=90.97  Aligned_cols=64  Identities=17%  Similarity=0.346  Sum_probs=55.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.+.     .....+++++++++|+|++|+|....
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-----~~~~~~l~ell~~aDiV~l~~P~t~~  186 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV-----DVISESPADLFRQSDFVLIAIPLTDK  186 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC-----SEECSSHHHHHHHCSEEEECCCCCTT
T ss_pred             chheeeccCchhHHHHHHHHhhCcEEEEEecccccccc-----ccccCChHHHhhccCeEEEEeecccc
Confidence            58999999999999999999999999999998765432     44566999999999999999996544

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.93  E-value=2.2e-09  Score=90.59  Aligned_cols=67  Identities=16%  Similarity=0.270  Sum_probs=56.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC----------CCcc-cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH----------GATV-GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~----------g~~~-~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||.+++..|+++|  ++|++|||++++++.+...          .... ..++ ++++++|+||+|+|.+
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            69999999999999999999999  8999999999888766531          1333 4566 7788999999999986


Q ss_pred             H
Q 025163           68 A   68 (257)
Q Consensus        68 ~   68 (257)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            5

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.92  E-value=2.7e-09  Score=89.86  Aligned_cols=66  Identities=9%  Similarity=0.183  Sum_probs=58.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+... +++++++++|+|++|+|...
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~  208 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVE  208 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCST
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCCh
Confidence            57999999999999999999999999999999877 55566787654 89999999999999999764

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.92  E-value=1.5e-09  Score=92.44  Aligned_cols=64  Identities=20%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|||||+|.||..+|+.|...|++|++|||++++.+     |.....+++++++++|+|++++|....
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~-----g~~~~~~l~ell~~aDvVil~vP~~~~  228 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT-----NYTYYGSVVELASNSDILVVACPLTPE  228 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC-----CSEEESCHHHHHHTCSEEEECSCCCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc-----CceecCCHHHHHhcCCEEEEecCCChH
Confidence            5899999999999999999999999999999887532     666677899999999999999997643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.92  E-value=2.9e-09  Score=89.95  Aligned_cols=66  Identities=17%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++. ...+.|+.. .+++++++++|+|++|+|...
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~  208 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSK  208 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCCh
Confidence            589999999999999999999999999999998774 355667765 489999999999999999764

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.91  E-value=2.3e-09  Score=92.29  Aligned_cols=69  Identities=16%  Similarity=0.100  Sum_probs=61.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++ |++|||++.+.+...+.|+....+++++++++|+|++|+|....
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~  234 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAG  234 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChH
Confidence            5799999999999999999999997 99999998777767777877767899999999999999998643

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.91  E-value=2.4e-09  Score=92.77  Aligned_cols=69  Identities=14%  Similarity=0.078  Sum_probs=60.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|||||+|.||..+|+.|...|++|++|||++++.+...+.|+....+++++++++|+|++++|....
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~  260 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE  260 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT
T ss_pred             CEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchH
Confidence            589999999999999999999999999999987766666666877667899999999999999997543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.90  E-value=3.1e-09  Score=90.67  Aligned_cols=67  Identities=19%  Similarity=0.242  Sum_probs=57.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|++|...|++|.+|||++...+...  |.....+++++++++|+|++++|....
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~--g~~~~~~l~ell~~sDvV~l~~Plt~~  240 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE--GAIYHDTLDSLLGASDIFLIAAPGRPE  240 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT--TCEECSSHHHHHHTCSEEEECSCCCGG
T ss_pred             CEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc--CCeEeCCHHHHHhhCCEEEEecCCCHH
Confidence            5799999999999999999999999999999875544332  777777999999999999999997644

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.89  E-value=1.8e-09  Score=91.75  Aligned_cols=68  Identities=21%  Similarity=0.219  Sum_probs=58.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++.+.+...+.|+... +++++++.+|+|++++|....
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~  213 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNAD  213 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTT
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHH
Confidence            58999999999999999999999999999998866665556676554 899999999999999996543

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.88  E-value=1.9e-08  Score=74.75  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~   71 (257)
                      +|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|....    ++.+.+    +.++|++|+++|++....
T Consensus         9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            6999999999999999999999999999999999999998886532    222211    468999999999886544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.87  E-value=3.4e-09  Score=90.59  Aligned_cols=68  Identities=19%  Similarity=0.222  Sum_probs=57.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.. ..+.|+....+++++++++|+|++++|....
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~  236 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEH  236 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTT
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHH
Confidence            5899999999999999999999999999999876522 2345776667899999999999999997643

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.87  E-value=5.5e-09  Score=88.88  Aligned_cols=67  Identities=18%  Similarity=0.294  Sum_probs=58.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++ +...+.|+.. .+++++++++|+|++|+|....
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~  232 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPS  232 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTT
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHH
Confidence            58999999999999999999999999999998776 3455667764 4899999999999999998754

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.86  E-value=8.7e-09  Score=88.16  Aligned_cols=121  Identities=15%  Similarity=0.213  Sum_probs=88.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|.||..++..|.+. +++|+ ++|+++++++.+.+. |....+|++++++  ++|+|++|+|+....+.  .
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~   84 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITR   84 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHH
Confidence            3799999999999999999986 66755 789999999888765 7788899999998  89999999999988776  3


Q ss_pred             HHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHHH--hcC
Q 025163           74 ITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALNV--IGK  121 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~~--~~~  121 (257)
                      ....|.+ +++-|+......+       .+....++++-.   ...+.+++++++.  +|.
T Consensus        85 al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG~  145 (344)
T 3euw_A           85 AVERGIPALCEKPIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVANQEIGN  145 (344)
T ss_dssp             HHHTTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHHTTTTSS
T ss_pred             HHHcCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHhcCCCCc
Confidence            4455654 6677876554421       222224555543   2445677777775  553

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.85  E-value=6.9e-09  Score=89.16  Aligned_cols=117  Identities=14%  Similarity=0.157  Sum_probs=85.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||..++..|.+.  +.+++ ++|+++++.+.+.+. |+...+|++++++  +.|+|++|+|+....+.  
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   93 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSI   93 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            4799999999999999999987  67754 889999999888764 8888899999986  78999999999887776  


Q ss_pred             HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .....|.+ +++-|+......+       ......++++-.   ...+.+++++++
T Consensus        94 ~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  149 (354)
T 3q2i_A           94 ECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQ  149 (354)
T ss_dssp             HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEEcccCCHHHHHHHHHHh
Confidence            34456665 5667876554322       111223444432   234567777776

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.85  E-value=8.6e-09  Score=86.85  Aligned_cols=120  Identities=14%  Similarity=0.209  Sum_probs=84.9

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||.. ++..|.+. +.+++ ++|+++++.+.+.+. |+...+|++++++++|+|++|+|+....+.  ..
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~a   86 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKIL   86 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHHH
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHHH
Confidence            48999999999996 88888874 56766 789999999988764 777788999999999999999999988776  44


Q ss_pred             HhcCCc-EEeccccCCccccc-------cCcEEEEecCChhhHHHHHHHHHHhc
Q 025163           75 TSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGEKALYDEAISALNVIG  120 (257)
Q Consensus        75 ~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~~~~~~~~~~~l~~~~  120 (257)
                      ...|.+ +++-|+......+.       +....++++-.......++.+-+.++
T Consensus        87 l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~ig  140 (308)
T 3uuw_A           87 LNLGVHVYVDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIKNNAT  140 (308)
T ss_dssp             HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHCC
T ss_pred             HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHHHHcC
Confidence            456765 55668766543221       22234566554433333444444454

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.82  E-value=4.9e-09  Score=88.84  Aligned_cols=67  Identities=22%  Similarity=0.427  Sum_probs=54.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHC---------CCcc-cCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH---------GATV-GGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~---------g~~~-~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.||.+++..|+++|+  +|+++|+++++++.+...         ...+ .++ .++++++|+||+|+|.+.
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            899999999999999999999999  999999998887765421         1122 234 456789999999999754

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.82  E-value=1.1e-08  Score=87.03  Aligned_cols=120  Identities=14%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|.||..++..|.+. +++|+ ++|+++++.+.+.+. |+. .+|++++++  +.|+|++|+|+....+.  .
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~   82 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIER   82 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHH
Confidence            3899999999999999999986 67765 789999999888764 777 889999987  79999999999888776  3


Q ss_pred             HHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHHH--hcC
Q 025163           74 ITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALNV--IGK  121 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~~--~~~  121 (257)
                      ....|.+ +++-|+......+       .+....++++-.   ...+.+++++++.  +|.
T Consensus        83 al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG~  143 (331)
T 4hkt_A           83 FARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDGRIGE  143 (331)
T ss_dssp             HHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTTTTCS
T ss_pred             HHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcCCCCc
Confidence            4455665 5667866554422       122233555543   2345677777765  553

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.82  E-value=9.5e-09  Score=76.25  Aligned_cols=65  Identities=20%  Similarity=0.281  Sum_probs=54.7

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +|+|||+    |.||..++++|.+.|++|+.+|++.+.+     .|.+...|+.|+.+.+|++++|+|+....+
T Consensus        16 ~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp~~~v~~   84 (138)
T 1y81_A           16 KIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVGLQ   84 (138)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHHHH
T ss_pred             eEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeCHHHHHH
Confidence            7999999    9999999999999999977777664433     488888899999889999999999644433

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.81  E-value=1.1e-08  Score=87.94  Aligned_cols=117  Identities=16%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHh--hcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVI--KKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~--~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|.||..++..|.+. +++| .++|+++++.+.+.+. |+...+|+++++  .+.|+|++|+|+....+.  .
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~   85 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQ   85 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence            3799999999999999999987 6774 4789999999888654 888888999998  568999999999888776  3


Q ss_pred             HHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH
Q 025163           74 ITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      ....|.+ +++-|+......+.       +....++++-.   ...+.+++++++
T Consensus        86 al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~  140 (354)
T 3db2_A           86 CARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMID  140 (354)
T ss_dssp             HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             HHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHh
Confidence            4456665 66788766544221       11223455543   234567777776

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.80  E-value=2.2e-08  Score=74.33  Aligned_cols=69  Identities=16%  Similarity=0.107  Sum_probs=56.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+.|....    ++++.+    ++++|+||+++|+....
T Consensus         8 ~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n   84 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFN   84 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHH
Confidence            6999999999999999999999999999999999999988776421    233222    35799999999966443

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.80  E-value=6.9e-09  Score=87.19  Aligned_cols=63  Identities=22%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|||||+|.||..+|++|...|++|.+|||+++  +.    +.....+++++++++|+|++|+|....
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~  187 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKH  187 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTT
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchH
Confidence            5899999999999999999999999999999876  21    444566899999999999999998754

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.79  E-value=1.3e-08  Score=85.55  Aligned_cols=67  Identities=24%  Similarity=0.295  Sum_probs=58.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..+++.|...|++|++|||++++.+.+.+.|...  ..+++++++++|+|++++|..
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~  226 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSM  226 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSC
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChh
Confidence            4799999999999999999999999999999998887777777653  257888899999999999973

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.79  E-value=3.8e-09  Score=89.43  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=55.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ++|||||+|.||..+|+.|...|++|++|||+++..+.+..  .....+++++++++|+|++++|.....
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t  205 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTT  205 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHH
Confidence            47999999999999999999999999999998765432211  123457889999999999999965443

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=98.79  E-value=1.3e-08  Score=85.82  Aligned_cols=66  Identities=15%  Similarity=0.176  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHH---CC---------CcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVA---HG---------ATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~---~g---------~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.+++..|+.+  |++|++||+++++++.+..   ..         +..++++++ ++++|+||+|+|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            8999999999999999999985  7999999999988775431   11         233467766 8899999999976


Q ss_pred             h
Q 025163           67 P   67 (257)
Q Consensus        67 ~   67 (257)
                      +
T Consensus        80 p   80 (310)
T 1guz_A           80 P   80 (310)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.78  E-value=1.2e-08  Score=84.16  Aligned_cols=65  Identities=23%  Similarity=0.349  Sum_probs=57.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +|+|||+|.||.+++..|.+.|++|++|||++++.+.+.+. |.. ..++.++ +++|+||+|+|...
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~  183 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGL  183 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTT
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCC
Confidence            68999999999999999999999999999999988887654 554 4577788 89999999999873

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.78  E-value=1.5e-08  Score=76.57  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-HCCCccc----CCHH---HH-hhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG----GSPA---EV-IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~   71 (257)
                      |+|.|+|+|.+|..+++.|.+.|++|++++|++++++.+. +.|....    .+.+   ++ ++++|+||+|++++....
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~   99 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNF   99 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHH
Confidence            5899999999999999999999999999999999988877 5565322    1222   22 567999999999876544


Q ss_pred             H
Q 025163           72 S   72 (257)
Q Consensus        72 ~   72 (257)
                      .
T Consensus       100 ~  100 (155)
T 2g1u_A          100 F  100 (155)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.78  E-value=4.6e-09  Score=88.82  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=54.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|++|...|++|++|||++...+.+  .+.....+++++++++|+|++++|....
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~  207 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRE  207 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSS
T ss_pred             ceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHH
Confidence            589999999999999999999999999999987543322  1122346899999999999999996643

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.77  E-value=1.2e-08  Score=92.22  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=56.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |+|+|||+|.||..+|++|...|++|++||++++. +...+.|+... +++++++++|+|++|+|..
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~  207 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKT  207 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCc
Confidence            58999999999999999999999999999998753 44555677665 8999999999999999976

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.77  E-value=1.7e-08  Score=84.48  Aligned_cols=67  Identities=21%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..+++.|...|.+|++|||++++.+.+.+.|+...  .++.++++++|+|++++|..
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~  224 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL  224 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChH
Confidence            47999999999999999999999999999999988777777776643  46788889999999999964

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.77  E-value=1.8e-08  Score=85.73  Aligned_cols=66  Identities=20%  Similarity=0.176  Sum_probs=56.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.  +.+ ++....+++++++++|+|++|+|....
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~  212 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--LEK-KGYYVDSLDDLYKQADVISLHVPDVPA  212 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHH-TTCBCSCHHHHHHHCSEEEECSCCCGG
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--HHh-hCeecCCHHHHHhhCCEEEEcCCCcHH
Confidence            579999999999999999999999999999988764  222 355555899999999999999997653

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.77  E-value=1.5e-08  Score=86.18  Aligned_cols=120  Identities=15%  Similarity=0.195  Sum_probs=87.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||..++..|.+. +.+|+ ++|+++++.+.+.+. |+ ...+|++++++  ++|+|++|+|+....+.  
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   85 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAK   85 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHH
Confidence            3799999999999999999985 56765 789999999888764 66 57889999987  78999999999988776  


Q ss_pred             HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCCh---hhHHHHHHHHH--Hhc
Q 025163           73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGEK---ALYDEAISALN--VIG  120 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~~---~~~~~~~~~l~--~~~  120 (257)
                      .....|.+ +++-|+......+       ......++++-..   ..+.+++++++  .+|
T Consensus        86 ~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g~iG  146 (330)
T 3e9m_A           86 LALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQEGGLG  146 (330)
T ss_dssp             HHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHHTTTTC
T ss_pred             HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHhCCCCC
Confidence            34455654 6678876554422       2223345555432   34567777776  455

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.76  E-value=1.8e-08  Score=86.54  Aligned_cols=69  Identities=23%  Similarity=0.301  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      ++|||||+|.||..+|+.+...|++|++|||++ +.+...+.|+.. .+++++++.+|+|++++|......
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~-~~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~  245 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL-PRSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENK  245 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS-CHHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC--
T ss_pred             CEEEEecCCcccHHHHHhhhhCCCEEEEECCCC-CHHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHH
Confidence            479999999999999999999999999999985 445556677764 489999999999999999765443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.76  E-value=2.1e-08  Score=85.84  Aligned_cols=118  Identities=16%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||..++..|.+. +.+++ ++|+++++.+.+.+. |+ ...+|++++++  ++|+|++|+|+....+.  
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   82 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVI   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHH
Confidence            3899999999999999999885 56755 789999998887764 65 47889999987  79999999999887776  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      .....|.+ +++-|+......+.       +....++++-.   ...+.+++++++.
T Consensus        83 ~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~  139 (344)
T 3ezy_A           83 ACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVEN  139 (344)
T ss_dssp             HHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHT
T ss_pred             HHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHc
Confidence            44456665 56788766544221       11223555543   2445677777763

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.76  E-value=1.3e-08  Score=86.16  Aligned_cols=65  Identities=11%  Similarity=0.098  Sum_probs=52.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHH----H------C--CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A------H--GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~----~------~--g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.++|..|+.+|+ +|++||+++++++...    .      .  .+..+++. ++++++|+||+|++.
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            589999999999999999999999 9999999988776531    1      1  23334667 778999999999943

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.75  E-value=3e-07  Score=78.07  Aligned_cols=117  Identities=14%  Similarity=0.136  Sum_probs=82.8

Q ss_pred             CeEEEEcCChhHHHH-HHHHHHCCCeEE-EEcCCchhHHHHHHC-CCc-ccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAI-SMNLLRNGFKVT-VWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~l-a~~L~~~g~~V~-~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||..+ +..|.+.+++++ ++|+++++.+.+.+. |+. ..+|++++++  ++|+|++|+|+....+.  
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~   80 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTL   80 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             CeEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHH
Confidence            799999999999998 888888778754 789999998887654 664 6788999886  59999999998877665  


Q ss_pred             HHHhcCCc-EEeccccCCccc-------cccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQP-------AETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~-------~~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .....|.+ +++.|+......       +.+....++++-.   ...+..++++++
T Consensus        81 ~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~  136 (332)
T 2glx_A           81 AAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIA  136 (332)
T ss_dssp             HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHH
T ss_pred             HHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHH
Confidence            34456765 566777654432       1122223445432   233566777776

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.75  E-value=3.2e-08  Score=85.18  Aligned_cols=117  Identities=14%  Similarity=0.103  Sum_probs=86.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~~   75 (257)
                      ||+|||+|.||...+..|.+. +.+|+ ++|+++++.+...+.|+...+|++++++  +.|+|++|+|+....+.  ...
T Consensus         7 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~al   86 (359)
T 3e18_A            7 QLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAISAL   86 (359)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHHHH
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHH
Confidence            699999999999999999877 56754 6799999987666678888899999987  78999999999888776  444


Q ss_pred             hcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           76 SKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        76 ~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      ..|.+ +++-|+......+.       +....++++-+   ...+.+++++++.
T Consensus        87 ~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~  140 (359)
T 3e18_A           87 EAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQ  140 (359)
T ss_dssp             HTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHH
T ss_pred             HCCCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHHHc
Confidence            56765 67788766544322       11223455432   2445677777763

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.74  E-value=1.3e-08  Score=85.79  Aligned_cols=62  Identities=21%  Similarity=0.262  Sum_probs=54.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.+      + ...+++++++++|+|++++|....
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~  206 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPE  206 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTT
T ss_pred             CEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChH
Confidence            5799999999999999999999999999999887643      2 245889999999999999998743

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.74  E-value=2.4e-08  Score=85.39  Aligned_cols=118  Identities=18%  Similarity=0.246  Sum_probs=85.6

Q ss_pred             CeEEEEcCChhHHHHHHHHH-H-CCCeEE-EEcCCchhHHHHHHC-C--CcccCCHHHHhhc--CceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIKK--CTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~-~g~~V~-~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~~--~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||..++..|. + .+++++ ++|+++++.+.+.+. |  ....+|+++++++  .|+|++|+|+....+.
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~   82 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESS   82 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHH
Confidence            37999999999999999999 4 366755 789999999888764 6  5778899999875  8999999999888776


Q ss_pred             --HHHhcCCc-EEeccccCCcccc--------ccCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           73 --AITSKGGH-FLEAPVSGSKQPA--------ETGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~~~~~~--------~~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                        .....|.+ +++-|+......+        ..+...++++-.   ...+.+++++++.
T Consensus        83 ~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~~r~~p~~~~~k~~i~~  142 (344)
T 3mz0_A           83 VLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRLVQVGFMRRYDSGYVQLKEALDN  142 (344)
T ss_dssp             HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCCEEECCGGGGSHHHHHHHHHHHT
T ss_pred             HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEEEEEecccccCHHHHHHHHHHHc
Confidence              44456765 5678876654432        123322255543   2445677777764

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.74  E-value=2.1e-08  Score=85.93  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--CCCeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~--~g~~V~~~~r~~~~~~~l~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..++..|..  ...+|.+|||++++.+++.+.     |  +....+++++++++|+|++|+|+.
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~  205 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK  205 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC
Confidence            379999999999999998864  346899999999999988764     5  345678999999999999999986

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.74  E-value=2.8e-09  Score=89.95  Aligned_cols=67  Identities=19%  Similarity=0.425  Sum_probs=53.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |+|||||+|.||..+|+.|...|++|++|||+++..+.+...  ....+++++++++|+|++++|....
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~  206 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQ  206 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchh
Confidence            589999999999999999999999999999987754321111  1125788999999999999996644

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.73  E-value=2.4e-08  Score=85.74  Aligned_cols=121  Identities=17%  Similarity=0.196  Sum_probs=88.7

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||. .++..|.+. +++|+ ++||++++.+.+.+. |+....|++++++  +.|+|++|+|+....+.  
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~  107 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWID  107 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHH
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            4799999999998 799999887 67765 789999999888765 8887889999986  58999999999988776  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH--HhcC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN--VIGK  121 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~--~~~~  121 (257)
                      .....|.+ +++-|+......+.       +....++++-.   ...+.+++++++  .+|.
T Consensus       108 ~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  169 (350)
T 3rc1_A          108 RALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIGE  169 (350)
T ss_dssp             HHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTCS
T ss_pred             HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence            44456665 66788776644222       22233555532   244677888887  4553

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=98.73  E-value=1.8e-08  Score=85.68  Aligned_cols=65  Identities=11%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH--------C----CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA--------H----GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~--------~----g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||.++|..|+..|+ +|++||+++++++....        .    .+..+++++++++++|+||+++.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            689999999999999999999998 99999999987765211        1    13345788888999999999983

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.73  E-value=2e-08  Score=85.64  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||+++..   .+.+.... +++++++++|+|++++|....
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~-~l~ell~~aDvV~l~~Plt~~  213 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTYT-DFDTVLKEADIVSLHTPLFPS  213 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEEC-CHHHHHHHCSEEEECCCCCTT
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhcccccc-CHHHHHhcCCEEEEcCCCCHH
Confidence            479999999999999999999999999999987651   22333333 899999999999999996543

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.70  E-value=4.8e-08  Score=84.00  Aligned_cols=121  Identities=17%  Similarity=0.260  Sum_probs=87.5

Q ss_pred             CeEEEEcCChhHHHHHHHHH-H-CCCeEE-EEcCCchhHHHHHHC-C--CcccCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLL-R-NGFKVT-VWNRTLSKCDELVAH-G--ATVGGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~-~g~~V~-~~~r~~~~~~~l~~~-g--~~~~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||..++..|. + .+.+|+ ++|+++++++.+.+. |  ....+|++++++  +.|+|++|+|+....+.
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~  103 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADV  103 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHH
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHH
Confidence            37999999999999999998 4 366755 789999999888764 6  678889999987  58999999999988776


Q ss_pred             --HHHhcCCc-EEeccccCCcccc--------ccCcEEEEecCC---hhhHHHHHHHHHH--hcC
Q 025163           73 --AITSKGGH-FLEAPVSGSKQPA--------ETGQLVILSAGE---KALYDEAISALNV--IGK  121 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~~~~~~--------~~~~~~~~~~g~---~~~~~~~~~~l~~--~~~  121 (257)
                        .....|.+ +++-|+......+        ..+...++++-.   ...+.+++++++.  +|.
T Consensus       104 ~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~  168 (357)
T 3ec7_A          104 AVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQ  168 (357)
T ss_dssp             HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCCEEEECGGGGSHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeEEEEeecccCCHHHHHHHHHHhcCCCCC
Confidence              44456665 6678877664422        223322245443   3445677777765  553

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=98.68  E-value=4.1e-08  Score=83.41  Aligned_cols=65  Identities=12%  Similarity=0.143  Sum_probs=53.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHH----H-------C-CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----A-------H-GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~----~-------~-g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.++|..|+.+|+ +|++||+++++++...    +       . .+..+++. ++++++|+||++++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~   92 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGV   92 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCC
Confidence            589999999999999999999999 9999999988776421    1       0 23344677 788999999999953

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.67  E-value=7.5e-08  Score=81.44  Aligned_cols=90  Identities=14%  Similarity=0.264  Sum_probs=70.1

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||.. ++..|.+. +++++ ++|+++++.+.+.+. |+...++.+++..++|+|++|+|+....+.  ..
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~a   85 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTL   85 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHHHH
Confidence            47999999999996 88888764 66765 899999999887765 777777887776689999999999877665  34


Q ss_pred             HhcCCc-EEeccccCCc
Q 025163           75 TSKGGH-FLEAPVSGSK   90 (257)
Q Consensus        75 ~~~g~~-~~~~pv~~~~   90 (257)
                      ...|.+ +++-|+....
T Consensus        86 l~~G~~v~~eKP~~~~~  102 (319)
T 1tlt_A           86 LNAGVHVCVDKPLAENL  102 (319)
T ss_dssp             HHTTCEEEEESSSCSSH
T ss_pred             HHcCCeEEEeCCCCCCH
Confidence            456765 5667866543

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.67  E-value=3e-08  Score=86.44  Aligned_cols=66  Identities=12%  Similarity=0.177  Sum_probs=55.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ++|||||+|.||..+|+++...|++|++|||++...    ..++....+++|+++.||+|++++|.....
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHH
Confidence            589999999999999999999999999999976531    123556678999999999999999987543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.66  E-value=2.5e-08  Score=85.87  Aligned_cols=64  Identities=11%  Similarity=0.132  Sum_probs=53.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|++|...|++|.+||++.+...     ......+++++++++|+|++++|....
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~~~~sl~ell~~aDiV~l~~Plt~~  183 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEGDFRTLDELVQEADVLTFHTPLYKD  183 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCSCBCCHHHHHHHCSEEEECCCCCCS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCcccCCHHHHHhhCCEEEEcCcCCcc
Confidence            5799999999999999999999999999998543221     233456899999999999999996543

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.66  E-value=1.9e-08  Score=84.96  Aligned_cols=120  Identities=14%  Similarity=0.175  Sum_probs=85.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||..++..|.+. +++ |.++|+++++.+.+.+. +...++++++++  ++|+|++|+|+....+.  ..
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~a   89 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITLAA   89 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHHH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHHH
Confidence            4899999999999999999986 566 55889999988776655 666788999885  79999999999887665  34


Q ss_pred             HhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHHHhcC
Q 025163           75 TSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALNVIGK  121 (257)
Q Consensus        75 ~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~~~~~  121 (257)
                      ...|.+ +++-|+.......       ++....++++-.   ...+.+++++++.+|.
T Consensus        90 l~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~lG~  147 (315)
T 3c1a_A           90 IASGKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVEHTQLFNPAWEALKADLTSIGP  147 (315)
T ss_dssp             HHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEECGGGGCHHHHHHHHTHHHHCS
T ss_pred             HHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEeechhcCHHHHHHHHHHHHcCC
Confidence            456765 5566876554321       111223444432   2345677777776764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.66  E-value=2.7e-08  Score=86.56  Aligned_cols=67  Identities=13%  Similarity=0.176  Sum_probs=53.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      ++|||||+|.||..+|+.+...|++|++||+++...    ..+.....++++++++||+|++++|......
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~  223 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTS  223 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHh
Confidence            479999999999999999999999999999975421    1244566799999999999999999876544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.65  E-value=2.1e-08  Score=82.06  Aligned_cols=66  Identities=24%  Similarity=0.221  Sum_probs=56.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|||+|.||.+++..|.+.|. +|+++||++++.+++.+. +.....++.++++++|+||.|+|..
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~g  177 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVG  177 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTT
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCC
Confidence            58999999999999999999998 899999999998887654 2234456778888999999999864

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=98.64  E-value=8.1e-08  Score=81.80  Aligned_cols=117  Identities=18%  Similarity=0.207  Sum_probs=85.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---Ce-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g---~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      |||||||+|.||..++..|.+.+   ++ |.++||++++.+.+.+. |+ +..+|++++++  +.|+|++|+|+....+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   82 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAA   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHH
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHH
Confidence            38999999999999999998764   34 56789999999888764 66 57889999987  68999999999988776


Q ss_pred             --HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           73 --AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                        .....|.+ +++-|+......+       .+....++++-.   ...+.+++++++
T Consensus        83 ~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~  140 (334)
T 3ohs_X           83 VMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLA  140 (334)
T ss_dssp             HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHh
Confidence              44456765 6778887664422       222334555543   244567777775

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.64  E-value=5.3e-08  Score=82.54  Aligned_cols=118  Identities=17%  Similarity=0.207  Sum_probs=81.2

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCeEEEEcCCchhHHHHHHC-CCcc-cCCHHHHh-hcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-GGSPAEVI-KKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~~~-~~~~~~~~-~~~dvii~~v~~~~~~~~--~   73 (257)
                      |||+|||+|.||. .++..|.+. +.+|+++|+++++.+++.+. |+.. ..+..+.+ .++|+|++|+|+....+.  .
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~   82 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF   82 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHHH
Confidence            4899999999998 599999875 67877999999999888764 6653 44545555 689999999998877665  3


Q ss_pred             HHhcCCc-EEeccccCCccc-------cccCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           74 ITSKGGH-FLEAPVSGSKQP-------AETGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~-------~~~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      ....|.+ +++-|+......       ++.....++++-.   ...+.+++++++.
T Consensus        83 al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~  138 (323)
T 1xea_A           83 FLHLGIPTFVDKPLAASAQECENLYELAEKHHQPLYVGFNRRHIPLYNQHLSELAQ  138 (323)
T ss_dssp             HHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEEECGGGCCHHHHHHCHHHHH
T ss_pred             HHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEEeeccccCHHHHHHHHHHhc
Confidence            3456664 567787655432       1222223455432   2445677777765

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.64  E-value=4.7e-08  Score=84.15  Aligned_cols=116  Identities=14%  Similarity=0.149  Sum_probs=83.5

Q ss_pred             eEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC--CCcccCCHHHHhhc--CceEEEccCChHHHHH--
Q 025163            2 EVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH--GATVGGSPAEVIKK--CTITIGMLADPAAALS--   72 (257)
Q Consensus         2 kI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--   72 (257)
                      ||+|||+|.||.. ++..|.+. +.+|+ ++|+++++.+.+.+.  +....+|+++++++  .|+|++|+|+....+.  
T Consensus         7 rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~   86 (359)
T 3m2t_A            7 KVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGL   86 (359)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence            7999999999995 88999876 56755 789999999888775  56778899999874  5999999999887776  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCCh---hhHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                      .....|.+ +++-|+......+.       +....++++-+.   ..+.+++++++
T Consensus        87 ~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  142 (359)
T 3m2t_A           87 LAMSKGVNVFVEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPVRQLREMTQ  142 (359)
T ss_dssp             HHHHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHHHHHHHHHT
T ss_pred             HHHHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHHHHHHHHHH
Confidence            44456765 56788766543222       112245555432   33456666665

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.64  E-value=4.1e-08  Score=83.04  Aligned_cols=66  Identities=14%  Similarity=0.391  Sum_probs=51.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH--HHH-HCCC------cc--cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELV-AHGA------TV--GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~--~l~-~~g~------~~--~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..++..|+++|+  +|+++||++++++  .+. ..+.      .+  ..+. +.++++|+||+|++.+
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~aD~Vii~v~~~   86 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGPR   86 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            799999999999999999999999  9999999987765  221 2222      11  1243 5678999999999654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.63  E-value=4.3e-08  Score=78.36  Aligned_cols=71  Identities=18%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCcc----cCCH---HHH-hhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV----GGSP---AEV-IKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~----~~~~---~~~-~~~~dvii~~v~~~~~~~   71 (257)
                      |||.|+|+|.+|..+++.|.+.|++|+++|+++++++.+.+ .|...    .++.   .++ ++++|+||++++++....
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            89999999999999999999999999999999999998765 35432    1222   232 468999999999886543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.62  E-value=4.6e-08  Score=83.23  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=54.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.  + +.++. ..+++++++++|+|++|+|....
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~  210 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQ  210 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchh
Confidence            579999999999999999999999999999987653  1 22333 34899999999999999998754

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=98.62  E-value=1.4e-07  Score=80.41  Aligned_cols=121  Identities=12%  Similarity=0.073  Sum_probs=88.4

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCeE-EEEcCCchhHHHHHHC--CCcccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRNGFKV-TVWNRTLSKCDELVAH--GATVGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~g~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||||||+|.+|. .++..|...+++| .++|+++++.+.+.+.  +....+|++++++  +.|+|++|+|+....+.  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   84 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELAL   84 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHH
Confidence            5899999999996 6788887778885 6889999999888765  6778889999986  68999999999888776  


Q ss_pred             HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC----hhhHHHHHHHHH--HhcC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE----KALYDEAISALN--VIGK  121 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~----~~~~~~~~~~l~--~~~~  121 (257)
                      .....|.+ +++-|+......+       ++....++++-.    +..+.+++++++  .+|.
T Consensus        85 ~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~~~~~i~~g~iG~  147 (336)
T 2p2s_A           85 RTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGRKFAVYFNERINVDSALFAGELVQRGEIGR  147 (336)
T ss_dssp             HHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCCCEEECCTTTTTCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCcHHHHHHHHHHhCCCCCc
Confidence            44456775 6778877654421       222223555532    233678888887  4553

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.61  E-value=9.7e-08  Score=82.35  Aligned_cols=84  Identities=23%  Similarity=0.288  Sum_probs=65.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc------cCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV------GGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~------~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||.|||+|.+|..++..|.+ .++|+++||+.++++++.+..-..      ..++.++++++|+||.|+|.......  
T Consensus        17 mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~~~v~~   95 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLGFKSIK   95 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcccchHHH
Confidence            899999999999999999976 589999999999998886642111      12345667899999999998755443  


Q ss_pred             HHHhcCCcEEecc
Q 025163           73 AITSKGGHFLEAP   85 (257)
Q Consensus        73 ~~~~~g~~~~~~p   85 (257)
                      .....|.+|+|..
T Consensus        96 ~~~~~g~~yvD~s  108 (365)
T 3abi_A           96 AAIKSKVDMVDVS  108 (365)
T ss_dssp             HHHHHTCEEEECC
T ss_pred             HHHhcCcceEeee
Confidence            5556788898843

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.61  E-value=1.5e-07  Score=80.38  Aligned_cols=117  Identities=16%  Similarity=0.186  Sum_probs=83.5

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HC-CCe-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RN-GFK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~-g~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|.||..++..|. +. +++ |.++|+++++.+.+.+. |+ ....|++++++  ++|+|++|+|+....+. 
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~   88 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMT   88 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHH
Confidence            48999999999999999998 53 667 56789999999888765 76 56789999886  68999999999877665 


Q ss_pred             -HHHhcCCc-EEeccccCCcccc-------ccC-cEEEEecCC---hhhHHHHHHHHH
Q 025163           73 -AITSKGGH-FLEAPVSGSKQPA-------ETG-QLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv~~~~~~~-------~~~-~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                       .....|.+ +++.|+......+       ... ...++++-.   ...+..+++++.
T Consensus        89 ~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i~  146 (346)
T 3cea_A           89 IYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIVD  146 (346)
T ss_dssp             HHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHHH
Confidence             34456765 4566776544321       122 334555432   234667777776

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.61  E-value=5.7e-08  Score=82.64  Aligned_cols=64  Identities=23%  Similarity=0.144  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|||||+|.||..+|+.|...|++|++|||++++.  + +.++. ..+++++++++|+|++++|...
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~  210 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIK  210 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCch
Confidence            579999999999999999999999999999987653  2 22333 3489999999999999999764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.61  E-value=6.8e-08  Score=81.26  Aligned_cols=67  Identities=19%  Similarity=0.354  Sum_probs=50.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHH---CC------Cccc-CCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA---HG------ATVG-GSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~---~g------~~~~-~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.||.+++..|+.+|+  +|+++|+++++++....   ..      .+.. .+ .++++++|+||++++.+.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            899999999999999999999999  99999999886654221   11      1222 34 467889999999996553

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.60  E-value=5e-08  Score=81.48  Aligned_cols=66  Identities=18%  Similarity=0.212  Sum_probs=52.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHH----C--C--CcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVA----H--G--ATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~----~--g--~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.+++..|+.+|+  +|.+||+++++++    ++.+    .  .  +...++ .++++++|+||++...
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            999999999999999999999998  9999999998764    1222    1  1  223446 7788999999999754


Q ss_pred             h
Q 025163           67 P   67 (257)
Q Consensus        67 ~   67 (257)
                      +
T Consensus        80 ~   80 (294)
T 1oju_A           80 A   80 (294)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.60  E-value=5.7e-08  Score=83.78  Aligned_cols=64  Identities=16%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.||..+|+.|...|++|++||++++..    ..|. ...+++++++++|+|++|+|....
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~  180 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRD  180 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSS
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccc
Confidence            589999999999999999999999999999865432    2343 345899999999999999997653

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.59  E-value=8.2e-08  Score=81.61  Aligned_cols=121  Identities=15%  Similarity=0.164  Sum_probs=85.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-Ce-EEEEcCCchhHHHHHHC-CCc-ccCCHHHHhh--cCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FK-VTVWNRTLSKCDELVAH-GAT-VGGSPAEVIK--KCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~-V~~~~r~~~~~~~l~~~-g~~-~~~~~~~~~~--~~dvii~~v~~~~~~~~--   72 (257)
                      |||||||+|.||..++..|.+.+ .+ |.++||++++.+.+.+. |+. ...|++++++  +.|+|++|+|+....+.  
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~   85 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAK   85 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHH
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHH
Confidence            37999999999999999998764 45 45789999998887765 664 7789999987  78999999999888776  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH--HhcC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN--VIGK  121 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~--~~~~  121 (257)
                      .....|.+ +++-|+......+.       +....++++-.   ...+..++++++  .+|.
T Consensus        86 ~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG~  147 (329)
T 3evn_A           86 AALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIGE  147 (329)
T ss_dssp             HHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTCS
T ss_pred             HHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCCC
Confidence            44456665 66788776544221       22223455533   355677888887  4553

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.57  E-value=1.4e-07  Score=79.99  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHH--CCCeEEEEcCCchhHHHHHHC------CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH------GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~--~g~~V~~~~r~~~~~~~l~~~------g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..++..|.+  ...+|.+|||++++.+++.+.      .+. ..++++++ ++|+|++|+|+.
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~  198 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSR  198 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCC
Confidence            379999999999999999987  246899999999999888753      234 67899999 999999999975

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=98.56  E-value=1.3e-07  Score=80.13  Aligned_cols=64  Identities=8%  Similarity=0.189  Sum_probs=51.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHH----HH------CC--CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VA------HG--ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l----~~------~g--~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||..++..|+..|+ +|.++|+++++++..    .+      ..  +..+++. ++++++|+||++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g   81 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG   81 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            589999999999999999999998 999999998876532    11      11  2334677 78899999999984

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.56  E-value=2.7e-07  Score=78.99  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=86.2

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~-   72 (257)
                      |||||||+|.||.. ++..+.+. +.+|+ ++|++++++++++++ |+ +..+|++++++  +.|+|++|+|+....+. 
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~  103 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWS  103 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHH
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHH
Confidence            48999999999975 56777765 45654 689999999988765 66 46789999885  47999999999988776 


Q ss_pred             -HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH--HhcC
Q 025163           73 -AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN--VIGK  121 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~--~~~~  121 (257)
                       .....|.+ +++-|+......+.       +....++++-.   ...+.+++++++  .+|.
T Consensus       104 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G~iG~  166 (350)
T 4had_A          104 IKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEGAIGS  166 (350)
T ss_dssp             HHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTTTTSS
T ss_pred             HHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcCCCCc
Confidence             44456765 67888876655332       22334556543   234567777776  3553

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.55  E-value=5.7e-08  Score=72.67  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=54.7

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCc--hhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~--~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|+|||+    |.||..++++|.+.|++|+.+|++.  +.+     .|.+...|+.|+...+|++++|+|+....+.
T Consensus        15 ~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~~~v~~v   86 (145)
T 2duw_A           15 TIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNSEAAWGV   86 (145)
T ss_dssp             CEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCSTHHHHH
T ss_pred             EEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCHHHHHHH
Confidence            6999999    8999999999999999977777654  332     4888888999988899999999997655443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.53  E-value=1.1e-07  Score=79.62  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=55.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CC---ccc--CCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA---TVG--GSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~---~~~--~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++.|||+|.||.+++..|.+.|. +|++++|++++++.+.+. +.   ...  .++.+.+.++|+||.|+|.+
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~  215 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVG  215 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTT
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCC
Confidence            479999999999999999999997 899999999999888754 32   222  24556678999999999976

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.50  E-value=3e-07  Score=79.14  Aligned_cols=90  Identities=19%  Similarity=0.282  Sum_probs=69.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeE-EEEcCCchhHHHHHHC-C----CcccCCHHHHhh--cCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V-~~~~r~~~~~~~l~~~-g----~~~~~~~~~~~~--~~dvii~~v~~~~~~~   71 (257)
                      |||+|||+|.||..++..|.+. ++++ .++|+++++.+.+.+. |    .....|++++++  +.|+|++|+|+....+
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   86 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   86 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHH
Confidence            4899999999999999999886 4564 5789999998887654 5    356789999886  5899999999987766


Q ss_pred             H--HHHhcCCc-EEeccccCCc
Q 025163           72 S--AITSKGGH-FLEAPVSGSK   90 (257)
Q Consensus        72 ~--~~~~~g~~-~~~~pv~~~~   90 (257)
                      .  .....|.+ +++-|+....
T Consensus        87 ~~~~al~aGk~V~~EKP~a~~~  108 (362)
T 1ydw_A           87 WAIKAAEKGKHILLEKPVAMNV  108 (362)
T ss_dssp             HHHHHHTTTCEEEECSSCSSSH
T ss_pred             HHHHHHHCCCeEEEecCCcCCH
Confidence            5  34456765 4566765543

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.49  E-value=2.4e-07  Score=68.48  Aligned_cols=66  Identities=20%  Similarity=0.274  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHH---H-hhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAE---V-IKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~---~-~~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|..++..|.+.|++|+++++++++.+.+.+.+....    .+.+.   + ..++|+||.|++++
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~   81 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN   81 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence            5999999999999999999999999999999988887766664321    23322   2 46799999999976

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.47  E-value=3.2e-07  Score=77.26  Aligned_cols=67  Identities=9%  Similarity=0.120  Sum_probs=51.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH---C-------C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA---H-------G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~---~-------g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..++..|+..|+ +|.++|+++++++....   .       .  +..+.+. ++++++|+||+++..+
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            599999999999999999999997 99999999877654211   1       1  2233566 7789999999998655


Q ss_pred             H
Q 025163           68 A   68 (257)
Q Consensus        68 ~   68 (257)
                      .
T Consensus        82 ~   82 (309)
T 1ur5_A           82 R   82 (309)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=98.46  E-value=3.8e-07  Score=79.20  Aligned_cols=121  Identities=14%  Similarity=0.204  Sum_probs=87.1

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHC-CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhc--CceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLG-IMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G-~mG~~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+| .||..++..|.+. +.+ |.++|+++++.+++.+. |+....|+++++++  .|+|++|+|+....+.  
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~   82 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVV   82 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHH
Confidence            489999999 9999999999886 456 45789999998887654 88888999999874  8999999999887766  


Q ss_pred             HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCCh---hhHHHHHHHHHH--hcC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGEK---ALYDEAISALNV--IGK  121 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~~---~~~~~~~~~l~~--~~~  121 (257)
                      .....|.+ +++-|+......+       .+....++++-..   ..+..++++++.  +|.
T Consensus        83 ~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG~  144 (387)
T 3moi_A           83 QASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQEGSVGR  144 (387)
T ss_dssp             HHHHTTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHHHCTTCC
T ss_pred             HHHHCCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHhcCCCCC
Confidence            44456765 5677876554322       1112234555432   345677888774  553

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.46  E-value=2.4e-07  Score=78.40  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC------CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.+++..|+..|+  +|.++|+++++++.    |.+.      +++..++..++++++|+||+++..
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            589999999999999999999887  89999999887665    4432      233334445678999999999854

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.46  E-value=2.8e-07  Score=77.65  Aligned_cols=68  Identities=15%  Similarity=0.182  Sum_probs=52.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHH------CCCccc-CCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVA------HGATVG-GSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~------~g~~~~-~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..++..|+..|+  +|.++|+++++++    ++.+      ...++. ++..++++++|+||++.+.+
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            999999999999999999999887  8999999988754    3332      123332 35567889999999998765


Q ss_pred             H
Q 025163           68 A   68 (257)
Q Consensus        68 ~   68 (257)
                      .
T Consensus        81 ~   81 (314)
T 3nep_X           81 R   81 (314)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.46  E-value=3.8e-07  Score=78.35  Aligned_cols=86  Identities=20%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC-------------------------CHHHHhhc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-------------------------SPAEVIKK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-------------------------~~~~~~~~   56 (257)
                      ||+|||+|.+|...++.+...|.+|+++||++++++.+.+.|.+...                         ++++.+++
T Consensus       186 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~  265 (381)
T 3p2y_A          186 SALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITK  265 (381)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhc
Confidence            79999999999999999999999999999999999999887765432                         45678899


Q ss_pred             CceEEEcc--CCh---H-HHHHHHH--hcCCcEEecccc
Q 025163           57 CTITIGML--ADP---A-AALSAIT--SKGGHFLEAPVS   87 (257)
Q Consensus        57 ~dvii~~v--~~~---~-~~~~~~~--~~g~~~~~~pv~   87 (257)
                      +|+||.++  |..   . ..+..++  ..|..++|..+.
T Consensus       266 aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d  304 (381)
T 3p2y_A          266 FDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGE  304 (381)
T ss_dssp             CSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             CCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCC
Confidence            99999986  321   1 1112222  357777775544

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.46  E-value=5.5e-07  Score=80.16  Aligned_cols=68  Identities=19%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|+|||+|.||..+++.+...|++|+++|+++.+.+...+.|+.. .+++++++++|+||.|+++...
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~  342 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDI  342 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHH
Confidence            4799999999999999999999999999999999988888888864 5788889999999999987653

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=98.46  E-value=5.6e-07  Score=78.39  Aligned_cols=66  Identities=18%  Similarity=0.159  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|.... +++|+++.+|+|+++..+.
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~-sL~eal~~ADVVilt~gt~  277 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVL-LVEDVVEEAHIFVTTTGND  277 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCS
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeec-CHHHHHhhCCEEEECCCCc
Confidence            47999999999999999999999999999999888777777787654 8999999999999876543

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.44  E-value=4.1e-07  Score=76.94  Aligned_cols=65  Identities=11%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHH----HHHH------CCCc--ccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD----ELVA------HGAT--VGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~----~l~~------~g~~--~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||.+++..|+..|+ +|+++|+++++++    ++.+      ...+  .+.+. ++++++|+||++...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~   85 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGV   85 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCc
Confidence            599999999999999999999999 9999999988764    2322      1223  33565 788999999999753

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=98.44  E-value=3.1e-07  Score=81.00  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=82.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCe-EEEEcCCchhHHHHHHC-CCc-----ccCCHHHHhh--cCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-GFK-VTVWNRTLSKCDELVAH-GAT-----VGGSPAEVIK--KCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~-g~~-----~~~~~~~~~~--~~dvii~~v~~~~~   69 (257)
                      |||+|||+|.||. .++..|.+. +++ |.++|+++++.+.+.+. |+.     ...|++++++  +.|+|++|+|+...
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            4899999999997 899999875 456 46789999998887664 654     4678999886  78999999999888


Q ss_pred             HHH--HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           70 ALS--AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        70 ~~~--~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .+.  .....|.+ +++-|+......+       ++....++++-.   ...+.+++++++
T Consensus       164 ~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  224 (433)
T 1h6d_A          164 AEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIR  224 (433)
T ss_dssp             HHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEEechhcCHHHHHHHHHHH
Confidence            776  44456765 5667876554321       112223455532   234567777776

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.44  E-value=9.1e-06  Score=71.06  Aligned_cols=72  Identities=25%  Similarity=0.350  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~~~~   72 (257)
                      |+|.|+|+|.+|..+++.|.+.|++|+++|+|+++++.+.+.|..+.    ++++   ++ ++++|+||+|++++.....
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~   84 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQ   84 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHH
Confidence            57999999999999999999999999999999999999998886542    2322   22 4689999999998765443

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.44  E-value=3.7e-07  Score=81.03  Aligned_cols=69  Identities=16%  Similarity=0.215  Sum_probs=54.1

Q ss_pred             CeEEEEcCChh--HHHHHHHHHHC----CCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIM--GKAISMNLLRN----GFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~m--G~~la~~L~~~----g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|.|  |.+++..|+..    |++|++||+++++++.....            .++.++|+.+++++||+||+
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIi   83 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN   83 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEE
Confidence            58999999996  57778888754    89999999999886654321            13445688888999999999


Q ss_pred             ccCChHH
Q 025163           63 MLADPAA   69 (257)
Q Consensus        63 ~v~~~~~   69 (257)
                      +++....
T Consensus        84 aagv~~~   90 (480)
T 1obb_A           84 TAMVGGH   90 (480)
T ss_dssp             CCCTTHH
T ss_pred             CCCcccc
Confidence            9997654

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.43  E-value=2.2e-07  Score=81.74  Aligned_cols=66  Identities=11%  Similarity=0.206  Sum_probs=54.6

Q ss_pred             CeEEEEcCChh--HHHHHHHHHH----CCCeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIM--GKAISMNLLR----NGFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~m--G~~la~~L~~----~g~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|+|  |..++..|+.    .| +|++||+++++++.+...         .++.++|++++++++|+||++++
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~air   84 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISIL   84 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEeccc
Confidence            48999999996  6899999986    56 999999999887665431         24567899999999999999998


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      ..
T Consensus        85 vG   86 (450)
T 3fef_A           85 PG   86 (450)
T ss_dssp             SS
T ss_pred             cC
Confidence            65

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.42  E-value=5.7e-07  Score=79.90  Aligned_cols=66  Identities=18%  Similarity=0.047  Sum_probs=56.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..+|+.|...|.+|++|||++.+..+....|... .+++++++.+|+|++++.+.
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~  343 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNY  343 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcc
Confidence            4799999999999999999999999999999988764555567665 48999999999999998544

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.42  E-value=2.4e-07  Score=79.25  Aligned_cols=117  Identities=13%  Similarity=0.219  Sum_probs=79.6

Q ss_pred             CeEEEEcCChhHHHHHHH-H-HH-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhc--CceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMN-L-LR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~-L-~~-~g~~V~-~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|.||..+... + .. .+++|+ ++|+++++.+...+. ++...+|+++++++  .|+|++|+|+....+. 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~   82 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA   82 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHH
Confidence            489999999999964433 4 33 366765 789998877544443 67788899999875  8999999999988776 


Q ss_pred             -HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCCh---hhHHHHHHHHH
Q 025163           73 -AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                       .....|.+ +++-|+......+.       +....++++-..   ..+.+++++++
T Consensus        83 ~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  139 (345)
T 3f4l_A           83 KRALEAGKNVLVEKPFTPTLAQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIE  139 (345)
T ss_dssp             HHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEechhcCHHHHHHHHHHh
Confidence             44456766 55678766544221       112235555432   44567788776

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=98.42  E-value=3.2e-06  Score=71.71  Aligned_cols=123  Identities=15%  Similarity=0.095  Sum_probs=81.7

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch--hHHHHHHCCCccc--CCHHHHh-hcCceEEEc--cCChHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS--KCDELVAHGATVG--GSPAEVI-KKCTITIGM--LADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~~--~~~~~~~-~~~dvii~~--v~~~~~~~~   72 (257)
                      |||.|||.|.+|.. +|+.|.++|++|+++|+++.  ..+.|.+.|+.+.  .+++++. .++|+||.+  +|.....-.
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHHH
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHHH
Confidence            57999999999995 99999999999999998643  5667888887654  3555554 478999985  444333333


Q ss_pred             HHHhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCe
Q 025163           73 AITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKA  123 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~  123 (257)
                      ....+|+.+++-+-.-........+..-+.|.  ...+...+..+|+..|.++
T Consensus        85 ~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~  137 (326)
T 3eag_A           85 AILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAGLAP  137 (326)
T ss_dssp             HHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence            56678888776442211100112233334442  3455567888999888665

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=98.41  E-value=4.3e-07  Score=79.19  Aligned_cols=120  Identities=13%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             eEEEEcCCh---hHHHHHHHHHHCC-CeEE--EEcCCchhHHHHHH-CCC---cccCCHHHHhhc-------CceEEEcc
Q 025163            2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVA-HGA---TVGGSPAEVIKK-------CTITIGML   64 (257)
Q Consensus         2 kI~iIG~G~---mG~~la~~L~~~g-~~V~--~~~r~~~~~~~l~~-~g~---~~~~~~~~~~~~-------~dvii~~v   64 (257)
                      ||||||+|.   ||...+..+...+ ++++  ++|+++++.+.+.+ .|+   +..+|+++++++       .|+|++|+
T Consensus        14 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~t   93 (398)
T 3dty_A           14 RWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIAT   93 (398)
T ss_dssp             EEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEES
T ss_pred             eEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECC
Confidence            799999999   9999999888765 5765  57999999988765 477   678899999865       89999999


Q ss_pred             CChHHHHH--HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCCh---hhHHHHHHHHH--HhcC
Q 025163           65 ADPAAALS--AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGEK---ALYDEAISALN--VIGK  121 (257)
Q Consensus        65 ~~~~~~~~--~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~~---~~~~~~~~~l~--~~~~  121 (257)
                      |+....+.  .....|.+ +++-|+......+       .+....++++-..   ..+.+++++++  .+|.
T Consensus        94 p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~G~iG~  165 (398)
T 3dty_A           94 PNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGVTYGYAGHQLIEQAREMIAAGELGD  165 (398)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHTTTTCS
T ss_pred             CcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCCC
Confidence            99988776  44456766 5678877654322       2222345555432   44567777776  3553

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=98.41  E-value=6.2e-07  Score=78.66  Aligned_cols=119  Identities=13%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             eEEEEcCCh---hHHHHHHHHHHCC-CeEE--EEcCCchhHHHHHHC-CC---cccCCHHHHhhc-------CceEEEcc
Q 025163            2 EVGFLGLGI---MGKAISMNLLRNG-FKVT--VWNRTLSKCDELVAH-GA---TVGGSPAEVIKK-------CTITIGML   64 (257)
Q Consensus         2 kI~iIG~G~---mG~~la~~L~~~g-~~V~--~~~r~~~~~~~l~~~-g~---~~~~~~~~~~~~-------~dvii~~v   64 (257)
                      ||+|||+|.   ||...+..+...+ ++++  ++|+++++.+++.+. |+   +..+|+++++++       .|+|++|+
T Consensus        39 rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~t  118 (417)
T 3v5n_A           39 RLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVT  118 (417)
T ss_dssp             EEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECS
T ss_pred             eEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECC
Confidence            799999999   9999998888776 5654  679999999888764 76   578899999876       89999999


Q ss_pred             CChHHHHH--HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH--Hhc
Q 025163           65 ADPAAALS--AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN--VIG  120 (257)
Q Consensus        65 ~~~~~~~~--~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~--~~~  120 (257)
                      |+....+.  .....|.+ +++-|+......+.       +....++++-.   ...+.+++++++  .+|
T Consensus       119 p~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG  189 (417)
T 3v5n_A          119 PNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIENGDIG  189 (417)
T ss_dssp             CTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHTTTTC
T ss_pred             CcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhcCCCC
Confidence            99888776  44456765 67788776544222       22223455543   244567777776  345

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=98.41  E-value=6.8e-07  Score=76.25  Aligned_cols=117  Identities=21%  Similarity=0.189  Sum_probs=84.4

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLG-IMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G-~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      +||+|||+| .||...+..|.+.  +.+| .++|+++++.+++.+. |+ ...+|++++++  +.|+|++|+|+....+.
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~   98 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   98 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence            379999999 8999999999876  4564 6789999999888764 65 67889999886  58999999999877665


Q ss_pred             --HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCCh---hhHHHHHHHHH
Q 025163           73 --AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                        .....|.+ +++-|+......+       ++....++++-..   ..+.+++++++
T Consensus        99 ~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  156 (340)
T 1zh8_A           99 IEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVE  156 (340)
T ss_dssp             HHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh
Confidence              44456765 6778876654422       2222235555432   34566777774

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.41  E-value=5.6e-07  Score=79.63  Aligned_cols=66  Identities=20%  Similarity=0.147  Sum_probs=57.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++|+|||+|.||..+|+.|...|.+|++||+++.+..+....|... .+++++++.+|+|++++.+.
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~  323 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV  323 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh
Confidence            4799999999999999999999999999999988765556667754 48999999999999997544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.41  E-value=3.5e-07  Score=75.23  Aligned_cols=65  Identities=22%  Similarity=0.240  Sum_probs=54.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .++.|||+|.||.+++..|.+.|.+|++++|++++.+++.+.|+... +++++ .++|+||-|+|..
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l-~~~DiVInaTp~G  183 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPK-SAFDLIINATSAS  183 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCS-SCCSEEEECCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHh-ccCCEEEEcccCC
Confidence            37899999999999999999999999999999999999885565433 33343 3899999999865

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=98.41  E-value=9.6e-07  Score=75.97  Aligned_cols=121  Identities=14%  Similarity=0.111  Sum_probs=86.5

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCe-EEEEcCCchhHHHHHHC-C-CcccCCHHHHhhc--CceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRNGFK-VTVWNRTLSKCDELVAH-G-ATVGGSPAEVIKK--CTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~g~~-V~~~~r~~~~~~~l~~~-g-~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--   72 (257)
                      +||||||+|.++. .++..+...+.+ |.++|+++++.+.+.+. | ....+|+++++++  .|+|++|+|+....+.  
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~  106 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAI  106 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHH
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHH
Confidence            3899999999994 577777777888 55789999999888764 4 5678899999864  8999999999887776  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCCh----hhHHHHHHHHH--HhcC
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGEK----ALYDEAISALN--VIGK  121 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~~----~~~~~~~~~l~--~~~~  121 (257)
                      .....|.+ +++-|+......+.       +....++++-..    ..+.+++++++  .+|.
T Consensus       107 ~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~g~iG~  169 (361)
T 3u3x_A          107 RAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAIGE  169 (361)
T ss_dssp             HHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHTTTTSS
T ss_pred             HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHcCCCCC
Confidence            44456765 67788776544222       223345555432    44567777776  3553

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.41  E-value=7.5e-07  Score=77.15  Aligned_cols=85  Identities=21%  Similarity=0.214  Sum_probs=64.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----------------------------CCHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----------------------------GSPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----------------------------~~~~~   52 (257)
                      ||+|||+|.+|..+++.+...|.+|++||+++++++.+.+.|....                             .++++
T Consensus       192 kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e  271 (405)
T 4dio_A          192 KIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAE  271 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHH
Confidence            7999999999999999999999999999999999998888776421                             14677


Q ss_pred             HhhcCceEEEccCChH--H----HHHHHH--hcCCcEEeccc
Q 025163           53 VIKKCTITIGMLADPA--A----ALSAIT--SKGGHFLEAPV   86 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~--~----~~~~~~--~~g~~~~~~pv   86 (257)
                      +++++|+||.|+..+.  .    .+..+.  ..|..++|..+
T Consensus       272 ~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          272 HIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             HhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence            8899999999863221  1    111222  35777777654

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=98.41  E-value=6e-07  Score=75.42  Aligned_cols=79  Identities=11%  Similarity=0.166  Sum_probs=54.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcc--cCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~--~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||..++..|.+. +++|. ++|+++++++.   .|+..  ..++.+. .++|+|++|+|+....+.  ..
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~~a   85 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTALEI   85 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHHHH
Confidence            3799999999999999999874 56766 78999887765   56542  3344444 689999999998877765  44


Q ss_pred             HhcCCcEEe
Q 025163           75 TSKGGHFLE   83 (257)
Q Consensus        75 ~~~g~~~~~   83 (257)
                      ...|.++++
T Consensus        86 l~aG~~Vi~   94 (304)
T 3bio_A           86 LKKGICTAD   94 (304)
T ss_dssp             HTTTCEEEE
T ss_pred             HHcCCeEEE
Confidence            456777664

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.40  E-value=5.9e-07  Score=75.71  Aligned_cols=63  Identities=17%  Similarity=0.323  Sum_probs=52.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|.||..++..|.+.  ..+|.+|||+  +.+++.+.     |+  ..+ +++++++++|+|++|+|..
T Consensus       123 ~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~  194 (313)
T 3hdj_A          123 VLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST  194 (313)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS
T ss_pred             EEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC
Confidence            699999999999999999873  3689999999  55555432     55  345 9999999999999999974

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.38  E-value=3.4e-07  Score=81.22  Aligned_cols=68  Identities=13%  Similarity=0.178  Sum_probs=54.3

Q ss_pred             eEEEEcCChh-HHHHHHHHHHC-----CCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhcCceEEEc
Q 025163            2 EVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         2 kI~iIG~G~m-G~~la~~L~~~-----g~~V~~~~r~~~~~~~l~~~------------g~~~~~~~~~~~~~~dvii~~   63 (257)
                      ||+|||+|.+ |.+++..|+++     +++|.+||+++++++...+.            .+..++|+.+++++||+||++
T Consensus        30 KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VVia  109 (472)
T 1u8x_X           30 SIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAH  109 (472)
T ss_dssp             EEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEc
Confidence            8999999999 66788888887     67899999999886653221            133456888899999999999


Q ss_pred             cCChHH
Q 025163           64 LADPAA   69 (257)
Q Consensus        64 v~~~~~   69 (257)
                      +|.+..
T Consensus       110 ag~~~~  115 (472)
T 1u8x_X          110 IRVGKY  115 (472)
T ss_dssp             CCTTHH
T ss_pred             CCCccc
Confidence            998654

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=98.37  E-value=1.2e-06  Score=77.57  Aligned_cols=120  Identities=13%  Similarity=0.139  Sum_probs=83.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeE-EEEcCCchhHHHHHH----CC---CcccC----CHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKV-TVWNRTLSKCDELVA----HG---ATVGG----SPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V-~~~~r~~~~~~~l~~----~g---~~~~~----~~~~~~~--~~dvii~~v~   65 (257)
                      |||+|||+|.||...+..|.+. +.+| .++|+++++++.+.+    .|   ....+    |++++++  +.|+|++|+|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            4899999999999999999875 5664 578999999887764    35   45666    8999986  5899999999


Q ss_pred             ChHHHHH--HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH--Hhc
Q 025163           66 DPAAALS--AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN--VIG  120 (257)
Q Consensus        66 ~~~~~~~--~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~--~~~  120 (257)
                      +....+.  .....|.+ +++-|+......+       ++....++++-+   ...+..++++++  .+|
T Consensus       101 ~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~G~iG  170 (444)
T 2ixa_A          101 WEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMALENVCYRRDVMAILNMVRKGMFG  170 (444)
T ss_dssp             GGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTTTTC
T ss_pred             cHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeccccCHHHHHHHHHHHcCCCC
Confidence            9888776  34456765 5677776554321       111223444432   133456777776  355

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=98.37  E-value=6.9e-07  Score=78.22  Aligned_cols=121  Identities=19%  Similarity=0.233  Sum_probs=86.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---------CCe-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN---------GFK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~---------g~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~   66 (257)
                      +||||||+|.||...+..|.+.         +.+ |.++|+++++++++++. |+ +..+|.+++++  +.|+|++|+|+
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            3799999999999999888764         235 55679999999988765 65 47789999885  58999999999


Q ss_pred             hHHHHH--HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH--hcC
Q 025163           67 PAAALS--AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV--IGK  121 (257)
Q Consensus        67 ~~~~~~--~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~--~~~  121 (257)
                      ....+.  .....|.+ +++-|+......+.       .....++++-.   ...+.+++++++.  +|.
T Consensus       107 ~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  176 (412)
T 4gqa_A          107 HLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMVAFNNIKTPAALLAKQIIARGDIGE  176 (412)
T ss_dssp             GGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEEECGGGTSHHHHHHHHHHHHTTTCS
T ss_pred             HHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeeeccceecCHHHHHHHHHHhcCCcCC
Confidence            988776  44456766 67888876654322       22223555542   3445677787774  553

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=98.37  E-value=8.6e-07  Score=75.96  Aligned_cols=116  Identities=16%  Similarity=0.206  Sum_probs=81.0

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeE-EEEcCCchhHHHHHHCCCcccCCHHHHhhc--CceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~   73 (257)
                      +||+|||+|.||.. .+..|.+. +.+| .++|+++++.+. ...+....+|+++++++  .|+|++|+|+....+.  .
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~   86 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQS   86 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence            37999999999997 77777765 5675 478999888761 11266788899999875  8999999999888776  4


Q ss_pred             HHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           74 ITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      ....|.+ +++-|+......+       .+....++++-.   ...+.+++++++
T Consensus        87 al~aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  141 (352)
T 3kux_A           87 ALAAGKHVVVDKPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLA  141 (352)
T ss_dssp             HHHTTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             HHHCCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHh
Confidence            4466765 6678876554322       122223555543   244567788776

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.37  E-value=6.2e-07  Score=78.35  Aligned_cols=68  Identities=26%  Similarity=0.380  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH-CCCcc--cCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATV--GGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~-~g~~~--~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|+|||+|.||..+++.|...|. +|+++||++++.+++.+ .|...  ..++.+.+.++|+||.|+|.+.
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~  239 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH  239 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence            479999999999999999999998 89999999998866654 36543  2466777889999999998654

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.37  E-value=8.5e-07  Score=74.96  Aligned_cols=66  Identities=14%  Similarity=0.248  Sum_probs=51.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHH----HHHHC------CCcc--cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD----ELVAH------GATV--GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~----~l~~~------g~~~--~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||.+++..|+..|+ +|.++|+++++++    ++.+.      ..++  ..+ .++++++|+||++...+
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag~p   84 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAGVP   84 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCCcC
Confidence            589999999999999999999988 9999999988764    33321      2333  344 47889999999997543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.37  E-value=1.1e-06  Score=75.61  Aligned_cols=115  Identities=18%  Similarity=0.230  Sum_probs=80.5

Q ss_pred             eEEEEcCChhHHH-HHHHHHHC-CCeE-EEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HH
Q 025163            2 EVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         2 kI~iIG~G~mG~~-la~~L~~~-g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~   74 (257)
                      ||+|||+|.||.. .+..+.+. +.+| .++|+++++++. ...+....+|++++++  +.|+|++|+|+....+.  ..
T Consensus         9 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~a   87 (364)
T 3e82_A            9 NIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARLA   87 (364)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHHH
Confidence            7999999999997 66777665 6675 478999987652 2236778889999987  78999999999888776  44


Q ss_pred             HhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           75 TSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        75 ~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      ...|.+ +++-|+......+       .+....++++-.   ...+.+++++++
T Consensus        88 l~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  141 (364)
T 3e82_A           88 LNAGKHVVVDKPFTLDMQEARELIALAEEKQRLLSVFHNRRWDSDYLGIRQVIE  141 (364)
T ss_dssp             HHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHH
T ss_pred             HHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEEeecccCHHHHHHHHHHH
Confidence            456665 5667876554422       122234555543   245677888876

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.36  E-value=1.7e-06  Score=70.14  Aligned_cols=61  Identities=15%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEE-EcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|+|+|.||..+++.+.+.++++.. +|++++.     ..|+.+.++++++. ++|++|-++...
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~p~   65 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSNPN   65 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSCHH
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCChH
Confidence            6899999999999999999998777554 7887663     46888888998888 999998555433

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.36  E-value=1.5e-07  Score=77.87  Aligned_cols=67  Identities=21%  Similarity=0.154  Sum_probs=53.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCC-cccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~-~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .++.|||+|.||.+++..|.+.|. +|++++|++++.+++.+... ....++.+++.++|+||.|+|..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~G  186 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAG  186 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC--
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCC
Confidence            368999999999999999999998 89999999999887764321 12234556678999999999976

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=98.33  E-value=2.9e-06  Score=74.41  Aligned_cols=127  Identities=22%  Similarity=0.330  Sum_probs=86.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCe-EEEEcCCchhHHHHHHC--C----------------------CcccCCHHHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAH--G----------------------ATVGGSPAEVI   54 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~--g----------------------~~~~~~~~~~~   54 (257)
                      +||||||+|.||..++..+.+. +.+ +.++||++++.+.+.+.  |                      ....+|.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            3899999999999999988764 445 56679999998877542  3                      34678999988


Q ss_pred             h--cCceEEEccCChHH-HHH--HHHhcCCcEEeccc--cC--C----ccccccCcEEEEecCC-hhhHHHHHHHHHHhc
Q 025163           55 K--KCTITIGMLADPAA-ALS--AITSKGGHFLEAPV--SG--S----KQPAETGQLVILSAGE-KALYDEAISALNVIG  120 (257)
Q Consensus        55 ~--~~dvii~~v~~~~~-~~~--~~~~~g~~~~~~pv--~~--~----~~~~~~~~~~~~~~g~-~~~~~~~~~~l~~~~  120 (257)
                      +  +.|+|++|+|++.. .+.  .....|.+.+....  ..  +    ....+.+....+..|+ +....++-++.+.+|
T Consensus       104 ~d~dIDaVviaTp~p~~H~e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~~~~gdqp~~~~eLv~~a~~~G  183 (446)
T 3upl_A          104 SNPLIDVIIDATGIPEVGAETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYSLGAGDEPSSCMELIEFVSALG  183 (446)
T ss_dssp             TCTTCCEEEECSCCHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEEECTTSHHHHHHHHHHHHHHTT
T ss_pred             cCCCCCEEEEcCCChHHHHHHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeeeecCCcchHHHHHHHHHHHhCC
Confidence            6  58999999998643 333  44466777764221  00  0    0012234444555565 455667777888889


Q ss_pred             CCeEEeC
Q 025163          121 KKAFFLG  127 (257)
Q Consensus       121 ~~~~~~g  127 (257)
                      .+++.+|
T Consensus       184 ~~~v~~G  190 (446)
T 3upl_A          184 YEVVSAG  190 (446)
T ss_dssp             CEEEEEE
T ss_pred             CeEEEec
Confidence            8888776

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.31  E-value=1e-06  Score=74.45  Aligned_cols=68  Identities=10%  Similarity=0.192  Sum_probs=48.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-----CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-----GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|++|.+++..|+..|+  +|.++|+++++++    ++.+.     ..++..+..++++++|+||++++.+.
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            589999999999999999999987  8999999987644    23221     11222234567899999999998764

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.31  E-value=9e-07  Score=74.77  Aligned_cols=67  Identities=12%  Similarity=0.155  Sum_probs=51.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHH----HHC------CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH------GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l----~~~------g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..++..|...|.  +|.++|+++++.+..    .+.      ..+...+..++++++|+||++.+.+
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            589999999999999999998774  899999998755432    221      1222234557789999999998754

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.30  E-value=1.3e-06  Score=75.51  Aligned_cols=67  Identities=22%  Similarity=0.270  Sum_probs=55.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCcc------cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .+|+|||+|.+|..+++.+...|.+|+++||++++++.+.+ .|...      ..++.+.++++|+||.|++.+
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p  242 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVP  242 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcC
Confidence            37999999999999999999999999999999999888776 45442      234567778999999998644

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=98.30  E-value=2.4e-06  Score=73.91  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--------CCe-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--------GFK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--------g~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~   68 (257)
                      ||||||+|.||..-+..+.+.        +.+ |.++|++++++++++++ |+ +..+|.+++++  +.|+|++|+|+..
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~  106 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQF  106 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGG
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHH
Confidence            699999999999877766532        345 56779999999988765 65 47789999885  5799999999998


Q ss_pred             HHHH--HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           69 AALS--AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        69 ~~~~--~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      ..+.  .....|.+ +++-|+......+.       +....++++-.   ...+.+++++++.
T Consensus       107 H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~  169 (393)
T 4fb5_A          107 HAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGD  169 (393)
T ss_dssp             HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHc
Confidence            8876  44456766 67788876655332       22234566543   2345677777763

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=98.30  E-value=1.6e-06  Score=77.42  Aligned_cols=117  Identities=15%  Similarity=0.198  Sum_probs=85.9

Q ss_pred             CeEEEEcC----ChhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHHC-CCc---ccCCHHHHhh--cCceEEEccCCh
Q 025163            1 MEVGFLGL----GIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~----G~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~~-g~~---~~~~~~~~~~--~~dvii~~v~~~   67 (257)
                      |||+|||+    |.||...+..|.+.  +.+| .++|+++++.+.+.+. |+.   ...|++++++  +.|+|++|+|+.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP  119 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcH
Confidence            37999999    99999999999986  6674 5789999999888764 654   7889999985  689999999998


Q ss_pred             HHHHH--HHHhcC------C-cEEeccccCCccc-------c-ccCcEEEEecCCh---hhHHHHHHHHH
Q 025163           68 AAALS--AITSKG------G-HFLEAPVSGSKQP-------A-ETGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        68 ~~~~~--~~~~~g------~-~~~~~pv~~~~~~-------~-~~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                      ...+.  .....|      . .+++-|+......       + ..+...++++-..   ..+.+++++++
T Consensus       120 ~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v~~~~R~~p~~~~~k~~i~  189 (479)
T 2nvw_A          120 EHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTIICLQGRKSPYIVRAKELIS  189 (479)
T ss_dssp             HHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEEEeccccCHHHHHHHHHHH
Confidence            87776  344556      5 4778888765432       1 2331456666432   34567777776

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=98.30  E-value=5.8e-07  Score=76.06  Aligned_cols=80  Identities=8%  Similarity=0.142  Sum_probs=59.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      |||+|||+|+||..++..|.+. +.+ |.++|+++++  .+. .|+...+++++++.++|+|++|+|+....+.  ....
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~~al~   80 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFA   80 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHT
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHHHHHH
Confidence            4899999999999999999987 456 5678998665  222 4666667788877789999999998866554  3334


Q ss_pred             cCCcEEe
Q 025163           77 KGGHFLE   83 (257)
Q Consensus        77 ~g~~~~~   83 (257)
                      .|.+++.
T Consensus        81 aG~~Vv~   87 (320)
T 1f06_A           81 QFACTVD   87 (320)
T ss_dssp             TTSEEEC
T ss_pred             CCCEEEE
Confidence            5665544

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.28  E-value=1.3e-06  Score=73.79  Aligned_cols=68  Identities=13%  Similarity=0.207  Sum_probs=53.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-----CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-----GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.||.+++..|+..|+  +|.++|+++++++    ++.+.     ..+..++..++++++|+||++...+.
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~~   88 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCCC
Confidence            699999999999999999999887  8999999988766    33321     23344455677899999999976543

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=98.28  E-value=1.7e-06  Score=74.37  Aligned_cols=114  Identities=15%  Similarity=0.195  Sum_probs=79.5

Q ss_pred             eEEEEcCChhHHH-HHHHHHHC-CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHhh--cCceEEEccCChHHHHH--H
Q 025163            2 EVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALS--A   73 (257)
Q Consensus         2 kI~iIG~G~mG~~-la~~L~~~-g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~   73 (257)
                      ||||||+|.||.. .+..|.+. +++| .++|++++++.+  +. +....+|++++++  +.|+|++|+|+....+.  .
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~   84 (358)
T 3gdo_A            7 KVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR--DFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMA   84 (358)
T ss_dssp             EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH--HCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHH
T ss_pred             eEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh--hCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence            7999999999997 67777665 5675 567999876332  23 6778889999987  68999999999888776  4


Q ss_pred             HHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHH
Q 025163           74 ITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      ....|.+ +++-|+......+.       +....++++-.   ...+.+++++++
T Consensus        85 al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  139 (358)
T 3gdo_A           85 CIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLIS  139 (358)
T ss_dssp             HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             HHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHh
Confidence            4456765 66788766544222       11223455443   244567788776

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.27  E-value=2.2e-06  Score=64.40  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=52.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHH---HCCCccc----CCH---HHH-hhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELV---AHGATVG----GSP---AEV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~---~~g~~~~----~~~---~~~-~~~~dvii~~v~~~~~   69 (257)
                      +|.|+|+|.+|..+++.|.+.|++|+++++++ ++.+.+.   ..|..+.    +++   .++ ++++|+||++++++..
T Consensus         5 ~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~   84 (153)
T 1id1_A            5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChHH
Confidence            69999999999999999999999999999984 6555554   3344321    122   333 6789999999998754


Q ss_pred             HH
Q 025163           70 AL   71 (257)
Q Consensus        70 ~~   71 (257)
                      ..
T Consensus        85 n~   86 (153)
T 1id1_A           85 NA   86 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.25  E-value=1e-06  Score=77.83  Aligned_cols=69  Identities=9%  Similarity=0.050  Sum_probs=54.2

Q ss_pred             CeEEEEcCChh-HHHHHHHHHHC-----CCeEEEEcCCc--hhHHHHHH--------CC----CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTL--SKCDELVA--------HG----ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~m-G~~la~~L~~~-----g~~V~~~~r~~--~~~~~l~~--------~g----~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|++ |.+++..|+++     +++|.+||+++  ++++....        .+    +..+.|..++++++|+|
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V   87 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   87 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence            58999999999 88888888874     67899999999  77654221        12    23456888899999999


Q ss_pred             EEccCChHH
Q 025163           61 IGMLADPAA   69 (257)
Q Consensus        61 i~~v~~~~~   69 (257)
                      |++++.+..
T Consensus        88 Vitagv~~~   96 (450)
T 1s6y_A           88 TTQFRVGGL   96 (450)
T ss_dssp             EECCCTTHH
T ss_pred             EEcCCCCCC
Confidence            999997653

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=98.25  E-value=1.3e-06  Score=74.73  Aligned_cols=115  Identities=13%  Similarity=0.197  Sum_probs=77.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCeE-EEEcCCchhHHHHHH----CCCcccCCHHHHhhc--CceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-GFKV-TVWNRTLSKCDELVA----HGATVGGSPAEVIKK--CTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-g~~V-~~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~   71 (257)
                      |||+|||+|.||. ..+..+.+. +++| .++|++  +.+++.+    .++...+|+++++++  .|+|++|+|+....+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~   80 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYD   80 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHH
Confidence            3799999999999 566666654 5675 477887  4444533    467888999999875  899999999988877


Q ss_pred             H--HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHH
Q 025163           72 S--AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALN  117 (257)
Q Consensus        72 ~--~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~  117 (257)
                      .  .....|.+ +++-|+......+       .+....++++-+   ...+.+++++++
T Consensus        81 ~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  139 (349)
T 3i23_A           81 LAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVE  139 (349)
T ss_dssp             HHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh
Confidence            6  44456765 5677876554322       222234555543   234567777776

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.25  E-value=9.2e-07  Score=73.11  Aligned_cols=69  Identities=23%  Similarity=0.254  Sum_probs=52.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CC--cc-cCCHHHHhh-cCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--TV-GGSPAEVIK-KCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~--~~-~~~~~~~~~-~~dvii~~v~~~~~   69 (257)
                      +++.|+|+|.||.+++..|.+.|++|++++|++++.+++.+. +.  .. ..+++++.+ ++|+||.|+|....
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~  193 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS  193 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC---
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCC
Confidence            478999999999999999999999999999999998888643 11  11 223444333 89999999997743

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=98.24  E-value=4e-06  Score=73.09  Aligned_cols=65  Identities=17%  Similarity=0.140  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||.|.+|..+|+.+...|.+|+++++++.+..+....|.... +++++++.+|+|++++.+.
T Consensus       249 TVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv-~LeElL~~ADIVv~atgt~  313 (464)
T 3n58_A          249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV-TLDDAASTADIVVTTTGNK  313 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC-CHHHHGGGCSEEEECCSSS
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec-cHHHHHhhCCEEEECCCCc
Confidence            6999999999999999999999999999999887666666777654 7899999999999987654

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.24  E-value=2.9e-06  Score=72.25  Aligned_cols=67  Identities=9%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC--CeEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+ |.+|..+|..++..|  .+|.++|+++++++-    |...     .+....+..++++++|+||++...+
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~p   87 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAP   87 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC--
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCCC
Confidence            59999998 999999999999988  489999999886653    4431     2344568888899999999997443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=98.22  E-value=1.7e-06  Score=76.41  Aligned_cols=116  Identities=12%  Similarity=0.114  Sum_probs=84.3

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHHC-CCc---ccCCHHHHhh--cCceEEEccCChH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GAT---VGGSPAEVIK--KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~~-g~~---~~~~~~~~~~--~~dvii~~v~~~~   68 (257)
                      ||+|||+    |.||...+..|.+.  +.+| .++|+++++.+.+.+. |+.   ...|++++++  +.|+|++|+|+..
T Consensus        22 rvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~  101 (438)
T 3btv_A           22 RVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVAS  101 (438)
T ss_dssp             EEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHH
T ss_pred             EEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHH
Confidence            7999999    99999999999987  5674 6789999998888764 654   6789999986  6899999999987


Q ss_pred             HHHH--HHHhcC------Cc-EEeccccCCccc-------cccCcEEEEecCCh---hhHHHHHHHHH
Q 025163           69 AALS--AITSKG------GH-FLEAPVSGSKQP-------AETGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        69 ~~~~--~~~~~g------~~-~~~~pv~~~~~~-------~~~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                      ..+.  .....|      .+ +++-|+......       +.+....++++-..   ..+.+++++++
T Consensus       102 H~~~~~~al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  169 (438)
T 3btv_A          102 HYEVVMPLLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTIISLQGRKSPYILRAKELIS  169 (438)
T ss_dssp             HHHHHHHHHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEEECGGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEEecccccCHHHHHHHHHHH
Confidence            7766  333456      44 677787655432       22223345555432   34567778776

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.22  E-value=9.8e-07  Score=73.17  Aligned_cols=67  Identities=18%  Similarity=0.243  Sum_probs=54.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-C---CcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G---ATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g---~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|+|+|.+|.+++..|.+.|. +|++++|++++.+++.+. +   -....+++++..++|+||.|+|..-
T Consensus       128 ~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm  199 (281)
T 3o8q_A          128 TILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASL  199 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC
T ss_pred             EEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCC
Confidence            68999999999999999999996 999999999998887653 1   1122245555578999999999874

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=98.22  E-value=1.4e-06  Score=74.91  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=81.8

Q ss_pred             eEEEEcCChhHHH-HHHHHHHC-CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHhhc--CceEEEccCChHHHHH--H
Q 025163            2 EVGFLGLGIMGKA-ISMNLLRN-GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVIKK--CTITIGMLADPAAALS--A   73 (257)
Q Consensus         2 kI~iIG~G~mG~~-la~~L~~~-g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~--~   73 (257)
                      ||+|||+|.||.. .+..|.+. +.+| .++|++++++.  .+. +....+|+++++++  .|+|++|+|+....+.  .
T Consensus         7 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~   84 (362)
T 3fhl_A            7 KTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGM   84 (362)
T ss_dssp             EEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH
Confidence            7999999999997 67777766 5675 47799988733  222 66788899999876  8999999999888776  4


Q ss_pred             HHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH--hcC
Q 025163           74 ITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV--IGK  121 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~--~~~  121 (257)
                      ....|.+ +++-|+......+.       +....++++-+   ...+.+++++++.  +|.
T Consensus        85 al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG~  145 (362)
T 3fhl_A           85 ALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAKSLLGR  145 (362)
T ss_dssp             HHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTTTSS
T ss_pred             HHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHcCCCCC
Confidence            4456765 66788766544222       12223555543   2445677888764  553

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.22  E-value=2.1e-06  Score=73.62  Aligned_cols=65  Identities=26%  Similarity=0.353  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhh-cCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIK-KCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~-~~dvii~~v~~   66 (257)
                      ++|+|+|+|+||..+|+.|.+.|++|+++|+++++++++.+. |.... +.+++.. ++|+++.|...
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~  240 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG  240 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH
Confidence            479999999999999999999999999999999998887764 65544 4445544 89999988643

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=98.21  E-value=3.9e-06  Score=71.30  Aligned_cols=67  Identities=21%  Similarity=0.346  Sum_probs=55.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      .++||||+|.+|..+|+.+..-|.+|.+||+.+..  ...+.+... .+++++++.||+|++++|-....
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~~-~~l~ell~~sDivslh~Plt~~T  208 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCVY-TSLDELLKESDVISLHVPYTKET  208 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTT
T ss_pred             cEEEEECcchHHHHHHHhhcccCceeeecCCccch--hhhhcCcee-cCHHHHHhhCCEEEEcCCCChhh
Confidence            36999999999999999999999999999987543  344556544 48999999999999999976543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=98.20  E-value=2.4e-06  Score=73.82  Aligned_cols=117  Identities=16%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC--------Ce-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG--------FK-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g--------~~-V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~   68 (257)
                      ||||||+|.||...+..+.+..        .+ |.++|+++++++.+++. |+ +..+|.+++++  +.|+|++|+|+..
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~   87 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDS   87 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGG
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHH
Confidence            6999999999999888877542        24 55779999999888764 65 46789999885  5799999999998


Q ss_pred             HHHH--HHHhcCCc-EEeccccCCccccc----------cCcEEEEecCCh---hhHHHHHHHHHH
Q 025163           69 AALS--AITSKGGH-FLEAPVSGSKQPAE----------TGQLVILSAGEK---ALYDEAISALNV  118 (257)
Q Consensus        69 ~~~~--~~~~~g~~-~~~~pv~~~~~~~~----------~~~~~~~~~g~~---~~~~~~~~~l~~  118 (257)
                      ..+.  .....|.+ +++-|+......+.          .....++++-..   ..+.+++++++.
T Consensus        88 H~~~~~~al~aGkhVl~EKPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R~~p~~~~~k~~i~~  153 (390)
T 4h3v_A           88 HAEIAIAALEAGKHVLCEKPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYRRVPAIALARKLVAD  153 (390)
T ss_dssp             HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCceeecCcccchhHHHHHHHHHHHHHhcCCceEEEeeeccCchHHHHHHHHHc
Confidence            8876  44456765 77888876654321          122345555432   345677777763

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=98.20  E-value=5.2e-06  Score=72.17  Aligned_cols=64  Identities=23%  Similarity=0.179  Sum_probs=55.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      +++|+|+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+|+|++|..+
T Consensus       222 tV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt  285 (435)
T 3gvp_A          222 QVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGN  285 (435)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSC
T ss_pred             EEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCC
Confidence            699999999999999999999999999999988776666677654 4799999999999998543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=98.20  E-value=2.6e-06  Score=70.30  Aligned_cols=65  Identities=23%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|||+|.+|.+++..|.+.|. +|++++|+.++.+.+.+. +.....+..  ..++|+||-|+|...
T Consensus       121 ~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm  187 (271)
T 1npy_A          121 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM  187 (271)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence            68999999999999999999997 799999999999888754 433322222  468999999999763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.20  E-value=1.3e-06  Score=73.81  Aligned_cols=66  Identities=12%  Similarity=0.114  Sum_probs=51.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~-------g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.||..++..|+..|+  +|.++|+++++++.    +.+.       .+....++++ ++++|+||++...+
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p  100 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGAR  100 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCC
Confidence            689999999999999999999987  89999999886543    2221       1233456665 78999999986543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.20  E-value=4.1e-06  Score=73.02  Aligned_cols=63  Identities=19%  Similarity=0.141  Sum_probs=54.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC---------------------------CHHHHh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---------------------------SPAEVI   54 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---------------------------~~~~~~   54 (257)
                      +|+|||+|.+|...++.+...|.+|+++|+++++.+.+.+.|.....                           ++.+.+
T Consensus       174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~  253 (401)
T 1x13_A          174 KVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQA  253 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHh
Confidence            78999999999999999999999999999999998888777765432                           255777


Q ss_pred             hcCceEEEcc
Q 025163           55 KKCTITIGML   64 (257)
Q Consensus        55 ~~~dvii~~v   64 (257)
                      .++|+||.|+
T Consensus       254 ~~aDvVI~~~  263 (401)
T 1x13_A          254 KEVDIIVTTA  263 (401)
T ss_dssp             HHCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            8899999993

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=98.19  E-value=4.3e-06  Score=70.47  Aligned_cols=119  Identities=9%  Similarity=-0.036  Sum_probs=82.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHC--CCcccCCHHHHh----------hcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH--GATVGGSPAEVI----------KKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~----------~~~dvii~~v~~   66 (257)
                      +||+|||+ |.||...+..|.+.+.+ |.++|+++++. .+.+.  +....+|.++++          .+.|+|++|+|+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            58999999 78999999999998877 56679998874 23332  567788898877          468999999999


Q ss_pred             hHHHHH--HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHHhc
Q 025163           67 PAAALS--AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNVIG  120 (257)
Q Consensus        67 ~~~~~~--~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~~~  120 (257)
                      ....+.  .....|.+ +++-|+......+.       +....++++-.   ...+..++++++.-|
T Consensus        83 ~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~gG  149 (312)
T 3o9z_A           83 HLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLGQEK  149 (312)
T ss_dssp             GGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTCC
T ss_pred             hhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHHcCC
Confidence            888776  44456765 56788776544322       11223444432   234566777776543

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.18  E-value=3.1e-06  Score=71.44  Aligned_cols=67  Identities=12%  Similarity=0.187  Sum_probs=51.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHH------CCCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.+|.+++..|+..|.  +|.++|+++++++.    +.+      ...++..+..++++++|+||++++.+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~   85 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA   85 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence            589999999999999999998884  89999999876553    222      12233335567789999999998654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.18  E-value=3.2e-06  Score=71.59  Aligned_cols=68  Identities=12%  Similarity=0.155  Sum_probs=52.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHH----HHC-----CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.+|.+++..|+..+.  +|.++|+++++++..    .+.     ..++..+..++++++|+||++.+.+.
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            699999999999999999998876  899999998876542    221     22233355677899999999987653

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.18  E-value=3.1e-06  Score=73.03  Aligned_cols=68  Identities=22%  Similarity=0.299  Sum_probs=54.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-CCCcc------cCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATV------GGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-~g~~~------~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++|+|+|+|.+|..+++.+...|++|+++||++++++.+.+ .|...      ..++.+.++++|+||.|++.+.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            47999999999999999999999999999999998887765 45432      2245567789999999998653

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.18  E-value=3.2e-06  Score=71.18  Aligned_cols=66  Identities=11%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC--chhHHH----HHH------CCCc--ccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--LSKCDE----LVA------HGAT--VGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~--~~~~~~----l~~------~g~~--~~~~~~~~~~~~dvii~~v~   65 (257)
                      +||+|||+|.||..++..|+..|+ +|+++|++  +++.+-    +.+      ...+  .+++ .++++++|+||++..
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIiaag   87 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVITAG   87 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEeCC
Confidence            389999999999999999999999 99999998  444322    211      1222  2334 467789999999975


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      .+
T Consensus        88 ~p   89 (315)
T 3tl2_A           88 IA   89 (315)
T ss_dssp             CC
T ss_pred             CC
Confidence            43

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.18  E-value=2.6e-06  Score=71.93  Aligned_cols=68  Identities=10%  Similarity=0.165  Sum_probs=52.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHH----HHC-----CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDEL----VAH-----GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l----~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.+|.+++..|+..++  +|.++|+++++++..    .+.     ..++..+..++++++|+||++.+.+.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~   84 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ   84 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence            599999999999999999998876  899999998876642    221     22333355677899999999987653

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=98.17  E-value=8.6e-07  Score=65.77  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=53.7

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +|+|||+    |.+|..++++|.+.||+  +|++|+.+ .+.+  .|..+..|+.|+-+..|++++++|.....+
T Consensus        15 ~vaVvGas~~~g~~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~~~~~~   85 (140)
T 1iuk_A           15 TIAVLGAHKDPSRPAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPPSALMD   85 (140)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCHHHHTT
T ss_pred             EEEEECCCCCCCChHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCHHHHHH
Confidence            6999999    89999999999999997  67777764 2222  477888899998888999999999854433

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=98.17  E-value=3.6e-06  Score=69.46  Aligned_cols=68  Identities=22%  Similarity=0.287  Sum_probs=53.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CC--c-ccCCHHHHh-hcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--T-VGGSPAEVI-KKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~--~-~~~~~~~~~-~~~dvii~~v~~~~   68 (257)
                      +++.|+|+|.||.+++..|++.|.+|++++|++++++.+.+. +.  . ...+.+++. .++|+||.|+|...
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~  192 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI  192 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCC
Confidence            368999999999999999999999999999999998887643 21  1 122333433 48999999999764

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=98.17  E-value=4.6e-06  Score=70.46  Aligned_cols=117  Identities=8%  Similarity=-0.050  Sum_probs=81.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHC--CCcccCCHHHHh-----------hcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH--GATVGGSPAEVI-----------KKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~-----------~~~dvii~~v~   65 (257)
                      |||||||+ |.||...+..|.+.+.+ |.++|+++++. .+.+.  +....+|.++++           .+.|+|++|+|
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP   82 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP   82 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence            58999999 78999999999998876 56679988763 23332  566778888876           46899999999


Q ss_pred             ChHHHHH--HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           66 DPAAALS--AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        66 ~~~~~~~--~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      +....+.  .....|.+ +++-|+......+.       +....++++-.   ...+..++++++.
T Consensus        83 ~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~  148 (318)
T 3oa2_A           83 NYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAR  148 (318)
T ss_dssp             GGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhc
Confidence            9888776  44456766 66788776544322       11223444432   2345667777764

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.17  E-value=3e-06  Score=71.02  Aligned_cols=65  Identities=11%  Similarity=0.197  Sum_probs=49.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCch---hHHHHHHC---CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLS---KCDELVAH---GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~---~~~~l~~~---g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||..++..|+.+|+  +|.++|++++   ...++...   .+....++ ++++++|+||+++..
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~   87 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNS   87 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCC
Confidence            589999999999999999999998  9999999874   22233321   34455677 678999999999743

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=98.16  E-value=4.8e-06  Score=61.98  Aligned_cols=74  Identities=15%  Similarity=0.188  Sum_probs=56.9

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +|+|||+    |.+|..++++|.+.|++  +|++|+.. +.+  .|..+..|+.|+....|++++++|.....+.  .+.
T Consensus        24 ~iaVVGas~~~g~~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~~~~~~vv~~~~   98 (144)
T 2d59_A           24 KIALVGASPKPERDANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAI   98 (144)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCCchHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCHHHHHHHHHHHH
Confidence            6999999    79999999999999997  55555553 111  4778888999988889999999998666554  333


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        99 ~~gi~  103 (144)
T 2d59_A           99 KKGAK  103 (144)
T ss_dssp             HHTCS
T ss_pred             HcCCC
Confidence            45543

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=98.16  E-value=2.4e-06  Score=73.67  Aligned_cols=84  Identities=18%  Similarity=0.283  Sum_probs=65.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeE-EEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHH----HHH-
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAA----ALS-   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V-~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~----~~~-   72 (257)
                      ||+|||+| +|...+..+.+.  ++++ -++||++++.+++.+. |+...+|+++++++.|++++|+|+...    .+. 
T Consensus         9 rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a   87 (372)
T 4gmf_A            9 RVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLA   87 (372)
T ss_dssp             EEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHH
T ss_pred             EEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHHHH
Confidence            79999999 899888888765  4664 4679999999888764 888889999999999999999998654    222 


Q ss_pred             -HHHhcCCc-EEeccc
Q 025163           73 -AITSKGGH-FLEAPV   86 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv   86 (257)
                       .+...|.+ +++-|+
T Consensus        88 ~~al~aGkhVl~EKPl  103 (372)
T 4gmf_A           88 RHFLARGVHVIQEHPL  103 (372)
T ss_dssp             HHHHHTTCEEEEESCC
T ss_pred             HHHHHcCCcEEEecCC
Confidence             44466776 566776

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.15  E-value=3.2e-06  Score=71.10  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHH----HHHC-----CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~----l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+|.+|.+++..|+..+  .+|.++|+++++++.    +.+.     ..++..+..++++++|+||++.+.+
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~   78 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA   78 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC
Confidence            89999999999999999999887  589999999887664    2221     2223224467789999999988654

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.15  E-value=5.1e-06  Score=70.03  Aligned_cols=67  Identities=18%  Similarity=0.300  Sum_probs=50.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC--CeEEEEcCCchh--HHHHHHCC----Ccc---cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSK--CDELVAHG----ATV---GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g--~~V~~~~r~~~~--~~~l~~~g----~~~---~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+|||+ |.+|..++..|+..|  ++|.++|+++.+  ..++.+..    +..   +++++++++++|+||++...+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~   79 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP   79 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence            89999998 999999999999988  789999998722  12333221    122   246788899999999997543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.15  E-value=8.3e-06  Score=70.63  Aligned_cols=71  Identities=20%  Similarity=0.302  Sum_probs=60.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc------hhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL------SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~------~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      .||+|||.|+-|.+-|.+|.+.|.+|++--|..      ...+...+.|..+. +++|+++.+|+|++.+|+....+.
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~~q~~v  114 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDKQHSDV  114 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGGGHHHH
T ss_pred             CEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChhhHHHH
Confidence            379999999999999999999999999887732      34556667788766 799999999999999999877665

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=98.12  E-value=1.1e-05  Score=71.39  Aligned_cols=129  Identities=21%  Similarity=0.225  Sum_probs=86.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc----hhHHHHHHCCCccc--CCHHHHhhc-CceEEEc--cCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL----SKCDELVAHGATVG--GSPAEVIKK-CTITIGM--LADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~----~~~~~l~~~g~~~~--~~~~~~~~~-~dvii~~--v~~~~~~~~   72 (257)
                      ||.|||.|..|.+.|+.|.+.|++|+++|+++    ...+.|.+.|+.+.  .++.+...+ +|+||++  +|.....-.
T Consensus        11 ~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~~   90 (451)
T 3lk7_A           11 KVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVK   90 (451)
T ss_dssp             EEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHHH
T ss_pred             EEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhHH
Confidence            79999999999999999999999999999864    24567777887654  234445566 8999986  444333333


Q ss_pred             HHHhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           73 AITSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        73 ~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ..+..|+.+++-+-.....  ...+..-+.|  |...+...+..+|+..+.+++..|++|..
T Consensus        91 ~a~~~gi~v~~~~e~~~~~--~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~~~~Gnig~~  150 (451)
T 3lk7_A           91 KALEKQIPVLTEVELAYLV--SESQLIGITGSNGKTTTTTMIAEVLNAGGQRGLLAGNIGFP  150 (451)
T ss_dssp             HHHHTTCCEECHHHHHHHH--CCSEEEEEECSSCHHHHHHHHHHHHHHTTCCEEEEETSSSC
T ss_pred             HHHHCCCcEEeHHHHHHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEeeecChh
Confidence            5667788777643221111  1223333343  23455667889999988877777766643

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=98.12  E-value=2.1e-06  Score=76.21  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=55.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc----cCCH---HHH-hhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSP---AEV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~----~~~~---~~~-~~~~dvii~~v~~~~~   69 (257)
                      |||-|+|+|.+|..+|+.|.+.||+|++.|+++++++++.+. ++.+    .+++   .++ ++++|+++.+++++..
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De~   81 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDET   81 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChHH
Confidence            899999999999999999999999999999999999998753 5432    1232   333 4789999888877644

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.10  E-value=1e-05  Score=70.08  Aligned_cols=64  Identities=17%  Similarity=0.158  Sum_probs=54.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CC---------------------------HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------------------PA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~---------------------------~~   51 (257)
                      .+|+|||+|.+|...++.+...|.+|+++||++++.+.+.+.|....  ..                           +.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            37999999999999999999999999999999999888887776543  11                           55


Q ss_pred             HHhhcCceEEEcc
Q 025163           52 EVIKKCTITIGML   64 (257)
Q Consensus        52 ~~~~~~dvii~~v   64 (257)
                      +.++++|+||.|+
T Consensus       253 ~~~~~aDvVi~~~  265 (384)
T 1l7d_A          253 KELVKTDIAITTA  265 (384)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HHhCCCCEEEECC
Confidence            6778999999998

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=98.10  E-value=1.2e-05  Score=65.41  Aligned_cols=87  Identities=16%  Similarity=0.142  Sum_probs=63.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHHC------CCccc-----C-
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVAH------GATVG-----G-   48 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~~------g~~~~-----~-   48 (257)
                      .+|.|||+|.+|..++..|++.|. +|+++|++.                   .|++.+++.      .+.+.     . 
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~  111 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLD  111 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEeccCC
Confidence            479999999999999999999996 899999987                   666555331      22211     1 


Q ss_pred             --CHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           49 --SPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        49 --~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                        +..+.++++|+||.|+++......   .....++.++.+...
T Consensus       112 ~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~  155 (249)
T 1jw9_B          112 DAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAI  155 (249)
T ss_dssp             HHHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             HhHHHHHHhCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence              234567899999999987654333   445568888886544

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=98.08  E-value=5e-06  Score=71.96  Aligned_cols=118  Identities=13%  Similarity=0.112  Sum_probs=80.2

Q ss_pred             CeEEEEc-CChhHHH-HH----HHHHHCCC-eE----------EEEcCCchhHHHHHH-CCC-cccCCHHHHhhc--Cce
Q 025163            1 MEVGFLG-LGIMGKA-IS----MNLLRNGF-KV----------TVWNRTLSKCDELVA-HGA-TVGGSPAEVIKK--CTI   59 (257)
Q Consensus         1 mkI~iIG-~G~mG~~-la----~~L~~~g~-~V----------~~~~r~~~~~~~l~~-~g~-~~~~~~~~~~~~--~dv   59 (257)
                      |||+||| +|.||.. .+    ..+.+.+. .+          .++||++++.+.+.+ .|+ ...+|+++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    66665542 22          489999999998875 477 467899999865  899


Q ss_pred             EEEccCChHHHHH--HHHhcCCc-EEeccccCCcccc-------ccCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           60 TIGMLADPAAALS--AITSKGGH-FLEAPVSGSKQPA-------ETGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        60 ii~~v~~~~~~~~--~~~~~g~~-~~~~pv~~~~~~~-------~~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      |++|+|+....+.  .....|.+ +++-|+......+       ++....++++-.   ...+..++++++.
T Consensus        87 V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~  158 (383)
T 3oqb_A           87 FFDAATTQARPGLLTQAINAGKHVYCEKPIATNFEEALEVVKLANSKGVKHGTVQDKLFLPGLKKIAFLRDS  158 (383)
T ss_dssp             EEECSCSSSSHHHHHHHHTTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGSHHHHHHHHHHHT
T ss_pred             EEECCCchHHHHHHHHHHHCCCeEEEcCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCHHHHHHHHHHHc
Confidence            9999998777665  44456766 4556776553321       122223455432   2345667777763

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=98.08  E-value=2.6e-06  Score=67.73  Aligned_cols=87  Identities=18%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhHHHHHHH--HHHCCCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMN--LLRNGFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~--L~~~g~~V-~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      ++|+|||+|.+|..+++.  +...|+++ -++|+++++...... .++...+++.+.+++.|++++|+|+....+.  .+
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~~~~ei~~~l  165 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAVAAQSITDRL  165 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCchhHHHHHHHH
Confidence            479999999999999994  34557775 456999987654322 1233456778887666999999998766544  56


Q ss_pred             HhcCCc--EEecccc
Q 025163           75 TSKGGH--FLEAPVS   87 (257)
Q Consensus        75 ~~~g~~--~~~~pv~   87 (257)
                      ...|++  +...|+.
T Consensus       166 ~~aGi~~Ilnf~P~~  180 (215)
T 2vt3_A          166 VALGIKGILNFTPAR  180 (215)
T ss_dssp             HHTTCCEEEECSSCC
T ss_pred             HHcCCCEEEEcCcee
Confidence            667765  3335543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.08  E-value=4.9e-06  Score=70.50  Aligned_cols=66  Identities=14%  Similarity=0.181  Sum_probs=50.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC--CeEEEEcCCch--hHHHHHHCCC--cc-----cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNG--FKVTVWNRTLS--KCDELVAHGA--TV-----GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g--~~V~~~~r~~~--~~~~l~~~g~--~~-----~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+||| +|.+|..++..|...|  ++|.++|++++  ...++.+...  .+     .+++.++++++|+||++.+.
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            6999999 7999999999999998  89999998876  2233443221  11     23567888999999999864

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=98.07  E-value=1e-05  Score=67.18  Aligned_cols=66  Identities=20%  Similarity=0.204  Sum_probs=54.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC------CC--cccC--CHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH------GA--TVGG--SPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~------g~--~~~~--~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|+|+|.+|.+++..|.+.|. +|++++|++++.+++.+.      +.  ....  ++.+.++++|+||-|+|..
T Consensus       129 ~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~G  205 (283)
T 3jyo_A          129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMG  205 (283)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTT
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCC
Confidence            68899999999999999999998 799999999998877542      11  1222  6777888999999999965

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=98.07  E-value=2.9e-06  Score=72.23  Aligned_cols=120  Identities=13%  Similarity=0.069  Sum_probs=79.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcCCc-hhHHHHHH----CC--CcccCCHHHHhh--cCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL-SKCDELVA----HG--ATVGGSPAEVIK--KCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r~~-~~~~~l~~----~g--~~~~~~~~~~~~--~~dvii~~v~~~~~~   70 (257)
                      |||+|||+|.+|...+..| ..+.+|+ ++|+++ ++.+.+.+    .|  ....+|++++++  +.|+|++|+|+....
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~   81 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNG   81 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHH
Confidence            4899999999999888777 5567755 579887 45444433    25  467789999886  489999999998877


Q ss_pred             HH--HHHhcCCc-EEeccccCCccccc--------cCcEE-EEecCC---hhhHHHHHHHHH--HhcC
Q 025163           71 LS--AITSKGGH-FLEAPVSGSKQPAE--------TGQLV-ILSAGE---KALYDEAISALN--VIGK  121 (257)
Q Consensus        71 ~~--~~~~~g~~-~~~~pv~~~~~~~~--------~~~~~-~~~~g~---~~~~~~~~~~l~--~~~~  121 (257)
                      +.  .....|.+ +++-|+......+.        .+... ++++-.   ...+.+++++++  .+|.
T Consensus        82 ~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~v~~~~R~~p~~~~~k~~i~~g~iG~  149 (337)
T 3ip3_A           82 KILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKVRNEVFFTAMFGIRYRPHFLTAKKLVSEGAVGE  149 (337)
T ss_dssp             HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTTTCCEEECCGGGGSHHHHHHHHHHHHTTTSS
T ss_pred             HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCceEEEecccccCCHHHHHHHHHHhcCCccc
Confidence            66  44456765 66788776543221        22211 444432   234567778777  4553

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.06  E-value=1.5e-05  Score=69.58  Aligned_cols=85  Identities=21%  Similarity=0.275  Sum_probs=64.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHHHHHHC-------CCcc-------cCCHHHHhhc--CceEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH-------GATV-------GGSPAEVIKK--CTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~-------g~~~-------~~~~~~~~~~--~dvii   61 (257)
                      |||.|||+|.+|..++..|++.|.   +|++++|++++++++.+.       .+..       ..++.+++++  +|+||
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            489999999999999999999983   899999999998877642       1211       1234556666  89999


Q ss_pred             EccCChHHHHH--HHHhcCCcEEecc
Q 025163           62 GMLADPAAALS--AITSKGGHFLEAP   85 (257)
Q Consensus        62 ~~v~~~~~~~~--~~~~~g~~~~~~p   85 (257)
                      .|++.......  .....|.+|+|..
T Consensus        82 n~ag~~~~~~v~~a~l~~g~~vvD~a  107 (405)
T 4ina_A           82 NIALPYQDLTIMEACLRTGVPYLDTA  107 (405)
T ss_dssp             ECSCGGGHHHHHHHHHHHTCCEEESS
T ss_pred             ECCCcccChHHHHHHHHhCCCEEEec
Confidence            99987654333  4556789999843

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=98.05  E-value=8.1e-06  Score=69.29  Aligned_cols=112  Identities=14%  Similarity=0.173  Sum_probs=77.1

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhc---CceEEEccCChHHHHH--
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+|.||. ..+..|.+. +.+ |.++|+++++      .|+...+|+++++++   .|+|++|+|+....+.  
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~   99 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAY   99 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHH
T ss_pred             ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence            3799999999998 788888876 566 4567998764      478888899998865   8999999998877765  


Q ss_pred             HHHhcCCc-EEeccccCCccccc-------cCcEEEEecCC---hhhHHHHHHHHHH
Q 025163           73 AITSKGGH-FLEAPVSGSKQPAE-------TGQLVILSAGE---KALYDEAISALNV  118 (257)
Q Consensus        73 ~~~~~g~~-~~~~pv~~~~~~~~-------~~~~~~~~~g~---~~~~~~~~~~l~~  118 (257)
                      .....|.+ +++-|+......+.       +....++++-.   ...+..++++++.
T Consensus       100 ~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~  156 (330)
T 4ew6_A          100 KALVAGKHVFLEKPPGATLSEVADLEALANKQGASLFASWHSRYAPAVEAAKAFLAS  156 (330)
T ss_dssp             HHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCGGGGSTTHHHHHHHHHS
T ss_pred             HHHHcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEEehhhccHHHHHHHHHHhc
Confidence            44456766 56677665533211       11223445432   2345667777764

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.04  E-value=9.8e-06  Score=71.92  Aligned_cols=83  Identities=19%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-CCcc----cC---CHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV----GG---SPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~~~----~~---~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|.+++..|++. |++|++++|++++++.+.+. ++..    ..   ++.++++++|+||.|+|.......
T Consensus        25 ~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~~~v  104 (467)
T 2axq_A           25 NVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFHPNV  104 (467)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGHHHH
T ss_pred             EEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhhHHH
Confidence            699999999999999999998 78999999999999888754 3321    11   344567899999999997643222


Q ss_pred             --HHHhcCCcEEec
Q 025163           73 --AITSKGGHFLEA   84 (257)
Q Consensus        73 --~~~~~g~~~~~~   84 (257)
                        .....|.++++.
T Consensus       105 ~~a~l~~g~~vvd~  118 (467)
T 2axq_A          105 VKSAIRTKTDVVTS  118 (467)
T ss_dssp             HHHHHHHTCEEEEC
T ss_pred             HHHHHhcCCEEEEe
Confidence              233456777764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=98.04  E-value=1.7e-05  Score=65.27  Aligned_cols=84  Identities=15%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCeEEE-EcCCchhH-----HHHH--HCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTV-WNRTLSKC-----DELV--AHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~~V~~-~~r~~~~~-----~~l~--~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      |||+|+| +|.||..+++.+.+. ++++.. ++|+++..     ..+.  ..|+.+.+|++++++++|+||-+++.....
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p~a~~   87 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLPEGTL   87 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCHHHHH
Confidence            4899999 899999999999876 567555 68875321     1111  126677889999999999999998765554


Q ss_pred             HH--HHHhcCCcEEec
Q 025163           71 LS--AITSKGGHFLEA   84 (257)
Q Consensus        71 ~~--~~~~~g~~~~~~   84 (257)
                      +.  .....|+.++-+
T Consensus        88 ~~~~~al~~G~~vVig  103 (272)
T 4f3y_A           88 VHLDAALRHDVKLVIG  103 (272)
T ss_dssp             HHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHcCCCEEEE
Confidence            43  555677776543

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.04  E-value=7.3e-06  Score=67.60  Aligned_cols=67  Identities=16%  Similarity=0.160  Sum_probs=53.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CC--cccCCHHHHh-hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GA--TVGGSPAEVI-KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~--~~~~~~~~~~-~~~dvii~~v~~~~   68 (257)
                      ++.|+|+|.+|.+++..|.+.|. +|++++|++++.+++.+. +.  ....+.+++. .++|+||-|+|..-
T Consensus       122 ~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm  193 (272)
T 3pwz_A          122 RVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASL  193 (272)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGG
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCC
Confidence            68999999999999999999995 999999999999988764 21  1112334433 68999999999763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.04  E-value=9.2e-06  Score=68.79  Aligned_cols=65  Identities=14%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~-------g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|||+|.||..++..|+.+|+  +|.++|+++++++-    |...       .+....+++ .++++|+||++...
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG~   97 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAGA   97 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccCC
Confidence            689999999999999999999987  89999999876654    3321       112244555 58899999998643

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=98.03  E-value=0.00014  Score=58.85  Aligned_cols=68  Identities=15%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|+|+ |.||..+++.+.+. ++++. ++|++               .+++++.. ++|++|-+++.....+.  ..
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~p~a~~~~~~~a   65 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTHPDVVMGNLEFL   65 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSCTTTHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccChHHHHHHHHHH
Confidence            89999996 99999999999866 89876 45664               34555554 78999966655544443  44


Q ss_pred             HhcCCcEEe
Q 025163           75 TSKGGHFLE   83 (257)
Q Consensus        75 ~~~g~~~~~   83 (257)
                      ...|...+-
T Consensus        66 ~~~g~~~Vi   74 (245)
T 1p9l_A           66 IDNGIHAVV   74 (245)
T ss_dssp             HHTTCEEEE
T ss_pred             HHcCCCEEE
Confidence            566766543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.03  E-value=7.7e-06  Score=68.73  Aligned_cols=65  Identities=20%  Similarity=0.212  Sum_probs=50.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHH----HH------CCC--cccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VA------HGA--TVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l----~~------~g~--~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||+|||+|.||.+++..|+..|+ +|.++|+++++++..    .+      ...  ..+.+. ++++++|+||++.+.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC
Confidence            79999999999999999998887 799999998776432    21      122  233565 6789999999997654

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=98.03  E-value=2.4e-05  Score=65.06  Aligned_cols=78  Identities=22%  Similarity=0.163  Sum_probs=59.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~   74 (257)
                      +||+|+|+ |.||...+++|.+.|+++ ++..|+.+. +.  ..|+.+..|++|+.+  ++|++++|+|.....+.  ..
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~g~~~-V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~~~~~~~~ea   84 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAYGTKM-VGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEA   84 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCeE-EEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHHHHHHHHHHH
Confidence            48999998 999999999999989983 344444432 11  347788889999987  89999999999877776  44


Q ss_pred             HhcCCcE
Q 025163           75 TSKGGHF   81 (257)
Q Consensus        75 ~~~g~~~   81 (257)
                      ...|++.
T Consensus        85 ~~~Gi~~   91 (288)
T 2nu8_A           85 IDAGIKL   91 (288)
T ss_dssp             HHTTCSE
T ss_pred             HHCCCCE
Confidence            4566653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.02  E-value=9.3e-06  Score=65.31  Aligned_cols=68  Identities=12%  Similarity=0.023  Sum_probs=54.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc----cCCHH---HH-hhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPA---EV-IKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~~~~---~~-~~~~dvii~~v~~~~~~   70 (257)
                      ++|.|+|+|.+|..+++.|.+.|+ |+++++++++++.+. .|..+    .++.+   ++ ++++|.||++++++...
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n   85 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSET   85 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHH
Confidence            479999999999999999999999 999999999998887 66543    12332   23 56899999999987443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=98.01  E-value=2.2e-05  Score=62.95  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC-cc-----cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TV-----GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~-~~-----~~~~~~~~~~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+...++ ..     ..++.+++.++|+||-+...
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCC
Confidence            68999987 999999999999999999999999999988877666 32     24556677789999987653

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.98  E-value=1e-05  Score=69.49  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=54.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|+|+|.+|...++.+...|.+|+++||++++++.+.+.+...       ..+..+.+.++|+||-|++.+.
T Consensus       169 ~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~  242 (361)
T 1pjc_A          169 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPG  242 (361)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTT
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCC
Confidence            789999999999999999999999999999999998887654321       1234456678999999997543

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.97  E-value=1.6e-05  Score=70.29  Aligned_cols=84  Identities=24%  Similarity=0.242  Sum_probs=59.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-C-Ccc----cC---CHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-G-ATV----GG---SPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g-~~~----~~---~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      ++|.|+|+|.+|..++..|++.|++|++++|++++++.+.+. + ...    ..   ++.++++++|+||.|+|......
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~~   83 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHAT   83 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccchH
Confidence            369999999999999999999999999999999988877653 2 211    12   33466778999999998653322


Q ss_pred             H--HHHhcCCcEEec
Q 025163           72 S--AITSKGGHFLEA   84 (257)
Q Consensus        72 ~--~~~~~g~~~~~~   84 (257)
                      .  .....|.++++.
T Consensus        84 i~~a~l~~g~~vvd~   98 (450)
T 1ff9_A           84 VIKSAIRQKKHVVTT   98 (450)
T ss_dssp             HHHHHHHHTCEEEES
T ss_pred             HHHHHHhCCCeEEEe
Confidence            1  222345666654

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.93  E-value=4.8e-05  Score=64.61  Aligned_cols=85  Identities=15%  Similarity=0.239  Sum_probs=61.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeE-EEEcCCchhHHHHHH-CCC------------------cccCCHHHHhhcCceE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKV-TVWNRTLSKCDELVA-HGA------------------TVGGSPAEVIKKCTIT   60 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V-~~~~r~~~~~~~l~~-~g~------------------~~~~~~~~~~~~~dvi   60 (257)
                      ||||+|+|.||..+++.|.++. .+| .++|+++++...+.+ .|.                  ....+++++..++|+|
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV   83 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence            8999999999999999998764 454 556888777765543 332                  3446788888899999


Q ss_pred             EEccCChHHHHH--HHHhcCCcEE-eccc
Q 025163           61 IGMLADPAAALS--AITSKGGHFL-EAPV   86 (257)
Q Consensus        61 i~~v~~~~~~~~--~~~~~g~~~~-~~pv   86 (257)
                      ++|+|.....+.  .....|.+.+ ++|.
T Consensus        84 ~~aTp~~~h~~~a~~~l~aGk~Vi~sap~  112 (334)
T 2czc_A           84 VDATPGGIGAKNKPLYEKAGVKAIFQGGE  112 (334)
T ss_dssp             EECCSTTHHHHHHHHHHHHTCEEEECTTS
T ss_pred             EECCCccccHHHHHHHHHcCCceEeeccc
Confidence            999998875554  3445566544 4554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.93  E-value=4.4e-05  Score=63.19  Aligned_cols=84  Identities=18%  Similarity=0.228  Sum_probs=60.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCe-EEEEcCCchh-----HHHHH---HCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GFK-VTVWNRTLSK-----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~~-V~~~~r~~~~-----~~~l~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+| +|.||..+++.+.+. +++ |-+++++++.     +.++.   ..|+.+..|+++++.++|+||-+++....
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p~a~  101 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQPQAS  101 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCHHHH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCHHHH
Confidence            4899999 899999999998865 567 4455886432     11222   24677888999999999999988875544


Q ss_pred             HHH--HHHhcCCcEEec
Q 025163           70 ALS--AITSKGGHFLEA   84 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~~   84 (257)
                      .+.  .....|+..+-+
T Consensus       102 ~~~~~~~l~~Gv~vViG  118 (288)
T 3ijp_A          102 VLYANYAAQKSLIHIIG  118 (288)
T ss_dssp             HHHHHHHHHHTCEEEEC
T ss_pred             HHHHHHHHHcCCCEEEE
Confidence            443  556677766543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.93  E-value=7.9e-06  Score=67.63  Aligned_cols=64  Identities=19%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCC-CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHG-ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g-~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ++.|||+|.+|.+++..|.+.|. +|++++|++++.+++.+.= .....++.+ + ++|+||-|+|..
T Consensus       124 ~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~G  189 (282)
T 3fbt_A          124 ICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKG  189 (282)
T ss_dssp             EEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTT
T ss_pred             EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccC
Confidence            68999999999999999999998 8999999999998887531 111112223 4 899999999864

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.91  E-value=3.2e-05  Score=61.26  Aligned_cols=66  Identities=21%  Similarity=0.281  Sum_probs=52.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-CCH----HHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSP----AEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~----~~~~~~~dvii~~v~~   66 (257)
                      |||.|.|+ |.+|..+++.|+++|++|++.+|++++.+.+...++... .|+    .+++.++|+||-+...
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            89999987 999999999999999999999999998887765554321 111    1567789999988754

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.90  E-value=5e-05  Score=63.85  Aligned_cols=85  Identities=15%  Similarity=0.231  Sum_probs=60.4

Q ss_pred             eEEEEcCChhHHHHHHHHHH-C-CCe-EEEEcCCchh-HHHHH-HCCCcc-cCCHHHHhh-----cCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-N-GFK-VTVWNRTLSK-CDELV-AHGATV-GGSPAEVIK-----KCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~-g~~-V~~~~r~~~~-~~~l~-~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~~   70 (257)
                      ||+|||+|.+|..++..|.+ . +.+ +.++|+++++ .+++. +.|... ..+.+++++     +.|+||+|+|.....
T Consensus         6 rVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h~   85 (312)
T 1nvm_B            6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHV   85 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHHH
Confidence            79999999999999999966 3 445 5567999887 55554 456653 445666643     579999999976655


Q ss_pred             HH--HHHhc--CCcEEe-ccc
Q 025163           71 LS--AITSK--GGHFLE-APV   86 (257)
Q Consensus        71 ~~--~~~~~--g~~~~~-~pv   86 (257)
                      +.  .....  |.+.++ .|.
T Consensus        86 ~~a~~al~a~~Gk~Vi~ekp~  106 (312)
T 1nvm_B           86 QNEALLRQAKPGIRLIDLTPA  106 (312)
T ss_dssp             HHHHHHHHHCTTCEEEECSTT
T ss_pred             HHHHHHHHhCCCCEEEEcCcc
Confidence            54  44455  877666 443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.87  E-value=4.7e-05  Score=60.06  Aligned_cols=65  Identities=17%  Similarity=0.222  Sum_probs=51.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||.|+|+ |.+|..+++.|+++|++|++++|++++.+.+. .++..     .+...+++.++|+||.|...
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            89999995 99999999999999999999999999887765 44322     11111567889999988754

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.87  E-value=3.9e-05  Score=67.82  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=57.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|+|+|.+|..+|+.|...|.+|+++|+++.+.++....|..+ .+.+++...+|+++.+.....
T Consensus       267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~  332 (488)
T 3ond_A          267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKD  332 (488)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChh
Confidence            688999999999999999999999999999999888887777654 477888889999998876543

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.86  E-value=3.2e-05  Score=62.62  Aligned_cols=76  Identities=14%  Similarity=0.194  Sum_probs=56.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeE-EEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHhc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITSK   77 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V-~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~~   77 (257)
                      |||+++|+|+||..+++.  . ++++ .+|+   ++..++   |+..++|+++++.++|+|+-|.+.....+.  .+...
T Consensus        13 ~rV~i~G~GaIG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~~~av~e~~~~iL~a   83 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECASPEAVKEYSLQILKN   83 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSCHHHHHHHHHHHTTS
T ss_pred             ceEEEECcCHHHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCCHHHHHHHHHHHHHC
Confidence            899999999999999998  4 7875 5566   443333   777788899888899999999876644442  55566


Q ss_pred             CCcEEecc
Q 025163           78 GGHFLEAP   85 (257)
Q Consensus        78 g~~~~~~p   85 (257)
                      |..++...
T Consensus        84 G~dvv~~S   91 (253)
T 1j5p_A           84 PVNYIIIS   91 (253)
T ss_dssp             SSEEEECC
T ss_pred             CCCEEEcC
Confidence            77765543

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.85  E-value=2e-05  Score=65.64  Aligned_cols=63  Identities=19%  Similarity=0.262  Sum_probs=47.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHH----CC--C--cccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVA----HG--A--TVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~----~g--~--~~~~~~~~~~~~~dvii~~v   64 (257)
                      |||+|||+|.+|.++|..|..++.  ++.++|+++++.+    +|..    .+  .  ....+. +.++++|+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCH-HHhCCCCEEEEec
Confidence            999999999999999999988774  7999999876543    3433    11  1  123344 5678999999986

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.84  E-value=2.6e-05  Score=64.29  Aligned_cols=82  Identities=20%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH-CCCeEE-EEcCCchhH--HHH------HHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DEL------VAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~-~g~~V~-~~~r~~~~~--~~l------~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+|+ |.||..+++.+.+ .|++++ ++|+++++.  +++      ...++...++++++++++|+||-+++....
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~p~~~   85 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGT   85 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCChHHH
Confidence            68999998 9999999998874 578866 678876431  111      112455567788888899999955543433


Q ss_pred             HHH--HHHhcCCcEE
Q 025163           70 ALS--AITSKGGHFL   82 (257)
Q Consensus        70 ~~~--~~~~~g~~~~   82 (257)
                      .+.  .....|.+++
T Consensus        86 ~~~~~~a~~~G~~vV  100 (273)
T 1dih_A           86 LNHLAFCRQHGKGMV  100 (273)
T ss_dssp             HHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHhCCCCEE
Confidence            333  5556677653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.84  E-value=6.9e-05  Score=63.69  Aligned_cols=83  Identities=19%  Similarity=0.259  Sum_probs=58.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHH-------------------CCCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~-------------------~g~~~~~~~~~~~~~~dv   59 (257)
                      +||+|+|+|.||..+++.|.++ ++++. +.+++++...++..                   .++.+..+++++..++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            4899999999999999999875 45654 45777555443332                   222333356677789999


Q ss_pred             EEEccCChHHHHH--HHHhcCCcEEe
Q 025163           60 TIGMLADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        60 ii~~v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      ||.|+|.....+.  .+...|...++
T Consensus        82 V~~atp~~~~~~~a~~~l~aG~~VId  107 (337)
T 1cf2_P           82 VIDCTPEGIGAKNLKMYKEKGIKAIF  107 (337)
T ss_dssp             EEECCSTTHHHHHHHHHHHHTCCEEE
T ss_pred             EEECCCchhhHHHHHHHHHcCCEEEE
Confidence            9999998866554  44556776666

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.82  E-value=2.7e-05  Score=64.94  Aligned_cols=111  Identities=14%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHH----CCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH-
Q 025163            1 MEVGFLGLGIMGKAISMNLLR----NGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~----~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|||+|.||...+..|.+    .+.+++ ++||+...    ...|+. ..|++++++  +.|+|++|+|+....+. 
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~   82 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYI   82 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHH
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHH
Confidence            489999999999999999875    345644 67876421    123544 478999886  68999999999888776 


Q ss_pred             -HHHhcCCc-EEeccccCCcccc--------ccCcEEEEecCCh---hhHHHHHHHHH
Q 025163           73 -AITSKGGH-FLEAPVSGSKQPA--------ETGQLVILSAGEK---ALYDEAISALN  117 (257)
Q Consensus        73 -~~~~~g~~-~~~~pv~~~~~~~--------~~~~~~~~~~g~~---~~~~~~~~~l~  117 (257)
                       .....|.+ +++-|+......+        ..+. .++.+-..   ..+..+++.+.
T Consensus        83 ~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~-~~~~~~~~r~~p~~~~~~~~i~  139 (294)
T 1lc0_A           83 RQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR-VLHEEHVELLMEEFEFLRREVL  139 (294)
T ss_dssp             HHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC-CEEEECGGGGSHHHHHHHHHHT
T ss_pred             HHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC-EEEEEEhHhccHHHHHHHHHHh
Confidence             44456775 6678877654322        2233 34554432   34455666664

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=97.82  E-value=0.00017  Score=65.07  Aligned_cols=123  Identities=14%  Similarity=0.111  Sum_probs=81.1

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCc--hhHHHHHHCCCccc--CCHHHHhhcCceEEEc--cCChHHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTL--SKCDELVAHGATVG--GSPAEVIKKCTITIGM--LADPAAALSA   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~--~~~~~l~~~g~~~~--~~~~~~~~~~dvii~~--v~~~~~~~~~   73 (257)
                      +||.|||.|..|.. +|+.|.+.|++|+++|.+.  ...+.|.+.|+.+.  .++++...++|+||..  +|.....-..
T Consensus        20 ~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~l~~   99 (524)
T 3hn7_A           20 MHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDVIEY   99 (524)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHHHHH
T ss_pred             CEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHHHHH
Confidence            57999999999996 7888999999999999864  34567888888654  3455554678999885  4544333335


Q ss_pred             HHhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCe
Q 025163           74 ITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKA  123 (257)
Q Consensus        74 ~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~  123 (257)
                      ...+|+.++.-+-.-...........-+.|.  ...+-..+..+|+..|.++
T Consensus       100 a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G~~~  151 (524)
T 3hn7_A          100 MLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAGIDA  151 (524)
T ss_dssp             HHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcCCCc
Confidence            6678888877553211111112233334443  3455567888999888654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.82  E-value=3.8e-05  Score=63.25  Aligned_cols=64  Identities=19%  Similarity=0.212  Sum_probs=52.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~~~~~dvii~~v~~   66 (257)
                      |||.|.|+|.+|..++..|.++|++|++.+|++++.+.+...++...    .+++  .+++|+||-|...
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence            68999999999999999999999999999999999888877665432    1232  6789999998753

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=97.76  E-value=5.3e-05  Score=63.48  Aligned_cols=66  Identities=14%  Similarity=0.085  Sum_probs=49.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--eEEEEcC--CchhHHH----HHHC-----CCcccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNR--TLSKCDE----LVAH-----GATVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~--~V~~~~r--~~~~~~~----l~~~-----g~~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||+|+| +|.+|..++..|+..|+  ++.++|+  ++++++.    +.+.     ..++..+..++++++|+||++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            8999999 99999999999998886  7999999  7765432    2221     122222336678999999998753

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.74  E-value=7.3e-05  Score=62.84  Aligned_cols=66  Identities=15%  Similarity=0.240  Sum_probs=52.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC---chhHHHHHHC-----CC--cc--cCC---HHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GA--TV--GGS---PAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~---~~~~~~l~~~-----g~--~~--~~~---~~~~~~~~dvii~~v~   65 (257)
                      ++.|+|+|.+|.+++..|++.|. +|++++|+   .++++++.+.     +.  ..  ..+   +.+.+.++|+||-|+|
T Consensus       156 ~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp  235 (315)
T 3tnl_A          156 KMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATG  235 (315)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSS
T ss_pred             EEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECcc
Confidence            68899999999999999999998 89999999   7888777542     22  11  122   3456678999999999


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      ..
T Consensus       236 ~G  237 (315)
T 3tnl_A          236 VG  237 (315)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=97.72  E-value=0.00014  Score=60.43  Aligned_cols=78  Identities=24%  Similarity=0.226  Sum_probs=58.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +||+|+|+ |.||..+++++.+.|+++ ++..||.+..+ .-.|..+..|++|+.+  ++|++++++|.....+.  ...
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~g~~~-v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~~~~~~~~~ea~   85 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTYGTKI-VAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAA   85 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEE-EEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCHHHHHHHHHHHcCCeE-EEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCHHHHHHHHHHHH
Confidence            48999998 999999999999999983 34444443100 1247888889999988  89999999998876665  444


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        86 ~~Gi~   90 (288)
T 1oi7_A           86 HAGIP   90 (288)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            55654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.72  E-value=7.9e-05  Score=62.57  Aligned_cols=67  Identities=13%  Similarity=0.224  Sum_probs=49.5

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-C--CeEEEEcCCc---hhHHHHHHCCC--ccc----CCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-G--FKVTVWNRTL---SKCDELVAHGA--TVG----GSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g--~~V~~~~r~~---~~~~~l~~~g~--~~~----~~~~~~~~~~dvii~~v~~~   67 (257)
                      |||+||| +|.+|..++..|... +  .++.++|+++   ....++.....  ++.    ++..++.+++|+||++...+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            8999999 899999999999875 4  4899999986   22334444321  222    35567889999999987543

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.71  E-value=8.7e-05  Score=62.27  Aligned_cols=66  Identities=18%  Similarity=0.236  Sum_probs=52.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC---chhHHHHHHC-----CCc--c--cCCH---HHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT---LSKCDELVAH-----GAT--V--GGSP---AEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~---~~~~~~l~~~-----g~~--~--~~~~---~~~~~~~dvii~~v~   65 (257)
                      ++.|+|+|.+|.+++..|.+.|. +|++++|+   .++++++.+.     +..  .  ..+.   .+.+.++|+||-|+|
T Consensus       150 ~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp  229 (312)
T 3t4e_A          150 TMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTK  229 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCc
Confidence            68899999999999999999997 89999999   7777777542     221  1  1232   456778999999999


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      ..
T Consensus       230 ~G  231 (312)
T 3t4e_A          230 VG  231 (312)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.69  E-value=0.00023  Score=60.51  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeE-EEEcCCchhHHHHH-HCCCcc-----------------cCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKV-TVWNRTLSKCDELV-AHGATV-----------------GGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V-~~~~r~~~~~~~l~-~~g~~~-----------------~~~~~~~~~~~dvi   60 (257)
                      +||||+|+|.||..+++.|.++. .+| .+.|++++....+. ..|...                 ..+++++.+++|+|
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            38999999999999999998764 454 45688766544433 234333                 22444555689999


Q ss_pred             EEccCChHHHHH--HHHhcCCcEEe
Q 025163           61 IGMLADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        61 i~~v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      |.|+|.....+.  .+...|...++
T Consensus        82 ~~aTp~~~s~~~a~~~~~aG~kvV~  106 (340)
T 1b7g_O           82 VDTTPNGVGAQYKPIYLQLQRNAIF  106 (340)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEEE
T ss_pred             EECCCCchhHHHHHHHHHcCCeEEE
Confidence            999998876554  45567776666

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=97.69  E-value=6.2e-05  Score=63.77  Aligned_cols=65  Identities=15%  Similarity=0.229  Sum_probs=50.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCC----chhHH----HHHHC------CCcccCCHHHHhhcCc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRT----LSKCD----ELVAH------GATVGGSPAEVIKKCT   58 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~----~~~~~----~l~~~------g~~~~~~~~~~~~~~d   58 (257)
                      |||+|+|+ |.+|..++..|...|+       +|.++|++    .++++    ++.+.      .+...++..++++++|
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD   85 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD   85 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence            58999998 9999999999998885       89999998    54443    24432      1223467888999999


Q ss_pred             eEEEccC
Q 025163           59 ITIGMLA   65 (257)
Q Consensus        59 vii~~v~   65 (257)
                      +||++..
T Consensus        86 ~Vi~~ag   92 (329)
T 1b8p_A           86 VALLVGA   92 (329)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9999864

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.69  E-value=1.9e-05  Score=66.30  Aligned_cols=67  Identities=10%  Similarity=0.052  Sum_probs=50.5

Q ss_pred             eEEEEcCChh-HHHHHHHHHHCCCeEEEEcCCchhH----HHHHHCCCcc-----c--CCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGATV-----G--GSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~m-G~~la~~L~~~g~~V~~~~r~~~~~----~~l~~~g~~~-----~--~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|||.|.| |..+|..|...|.+|+++||+..+.    +.+...-...     .  .++.+.++++|+||.+++.+.
T Consensus       179 ~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~  257 (320)
T 1edz_A          179 KCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN  257 (320)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             EEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCc
Confidence            6899999986 9999999999999999999984432    2222111111     1  467888999999999998763

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.68  E-value=2.7e-05  Score=64.73  Aligned_cols=66  Identities=17%  Similarity=0.222  Sum_probs=50.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CC--------c-ccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GA--------T-VGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~--------~-~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++.|+|+|.+|.+++..|++.| +|++++|+.++.+++.+. +.        . -..+..+...++|+||.|++..
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag~~  204 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG  204 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCCCC
Confidence            36889999999999999999999 999999999888777542 10        0 0112244567899999999865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=97.64  E-value=4.9e-05  Score=59.18  Aligned_cols=65  Identities=20%  Similarity=0.236  Sum_probs=46.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----c--CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----G--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..+++.|.+.|++|++.+|++++.+.+...++..     .  .++.++++++|+||.+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~   76 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG   76 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence            57999987 99999999999999999999999987654322222221     1  123345566777776654

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=97.64  E-value=1.6e-05  Score=62.89  Aligned_cols=87  Identities=17%  Similarity=0.185  Sum_probs=59.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCe-EEEEcCCchhHHHHHH-CCCcccCCHHHHhh-cCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLR-NGFK-VTVWNRTLSKCDELVA-HGATVGGSPAEVIK-KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~-~g~~-V~~~~r~~~~~~~l~~-~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~--~~   74 (257)
                      +|++|||+|.+|..+++.+.. .|++ |-++|.++++...... ..+...+++.+.++ +.|++++|+|+....+.  .+
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps~~~~ei~~~l  160 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLL  160 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHH
T ss_pred             CEEEEECccHHHHHHHHhHhhcCCcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCchhHHHHHHHH
Confidence            379999999999999996322 2676 4556999887654322 12333567777775 58999999998866554  56


Q ss_pred             HhcCCc-EEe-cccc
Q 025163           75 TSKGGH-FLE-APVS   87 (257)
Q Consensus        75 ~~~g~~-~~~-~pv~   87 (257)
                      ...|++ ++. .|+.
T Consensus       161 ~~aGi~~Ilnf~P~~  175 (211)
T 2dt5_A          161 VAAGIKGILNFAPVV  175 (211)
T ss_dssp             HHHTCCEEEECSSSC
T ss_pred             HHcCCCEEEECCccc
Confidence            667766 333 5654

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=97.62  E-value=0.00024  Score=62.37  Aligned_cols=81  Identities=27%  Similarity=0.448  Sum_probs=59.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHC----------CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCC-h
Q 025163            2 EVGFLGLGIMGKAISMNLLRN----------GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLAD-P   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~----------g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~-~   67 (257)
                      ||+|||+|.||..++..|.++          +.+ +.++||++++.+.+. .+....+|++++++  +.|+|+.|+|. .
T Consensus        12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~~   90 (444)
T 3mtj_A           12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGLE   90 (444)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred             cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence            799999999999999887642          344 456799988877663 35677889999886  57999999996 4


Q ss_pred             HHHHH--HHHhcCCcEEe
Q 025163           68 AAALS--AITSKGGHFLE   83 (257)
Q Consensus        68 ~~~~~--~~~~~g~~~~~   83 (257)
                      .+.+.  .....|.+.+.
T Consensus        91 ~h~~~~~~AL~aGKhVvt  108 (444)
T 3mtj_A           91 PARELVMQAIANGKHVVT  108 (444)
T ss_dssp             THHHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHcCCEEEE
Confidence            44333  34456766554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.62  E-value=8.6e-05  Score=58.81  Aligned_cols=66  Identities=17%  Similarity=0.345  Sum_probs=49.4

Q ss_pred             Ce-EEEEc-CChhHHHHHHHHH-HCCCeEEEEcCCch-hHHHHHHC--CCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            1 ME-VGFLG-LGIMGKAISMNLL-RNGFKVTVWNRTLS-KCDELVAH--GATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mk-I~iIG-~G~mG~~la~~L~-~~g~~V~~~~r~~~-~~~~l~~~--g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      || |.|.| .|.+|..+++.|+ +.|++|++++|+++ +++.+...  ++..       ..++.++++++|+||.+...
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence            46 88998 5999999999999 89999999999998 87777422  2211       11334556778888877764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.60  E-value=0.00048  Score=54.85  Aligned_cols=118  Identities=19%  Similarity=0.155  Sum_probs=72.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCC-Cccc---CCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g-~~~~---~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      ++|.|||.|.+|..-++.|.+.|.+|++++.+.. .++.+.+.| +...   ... +.+.++|+||.|+.++..-..  .
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~-~dL~~adLVIaAT~d~~~N~~I~~  110 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGE-EDLLNVFFIVVATNDQAVNKFVKQ  110 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCG-GGSSSCSEEEECCCCTHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCH-hHhCCCCEEEECCCCHHHHHHHHH
Confidence            4789999999999999999999999999987653 456666654 3321   222 335789999999887765444  2


Q ss_pred             HHhcCC--cEEeccccC---CccccccCcEEEEec--C-ChhhHHHHHHHHHHh
Q 025163           74 ITSKGG--HFLEAPVSG---SKQPAETGQLVILSA--G-EKALYDEAISALNVI  119 (257)
Q Consensus        74 ~~~~g~--~~~~~pv~~---~~~~~~~~~~~~~~~--g-~~~~~~~~~~~l~~~  119 (257)
                      ....|+  ..+|.|-.+   -|.....+.+.+.++  | .+.....+++-++..
T Consensus       111 ~ak~gi~VNvvD~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~~  164 (223)
T 3dfz_A          111 HIKNDQLVNMASSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSSN  164 (223)
T ss_dssp             HSCTTCEEEC-----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHhCCCEEEEeCCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            222343  234444322   233444556655554  3 445555666666544

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=97.59  E-value=3.3e-05  Score=61.20  Aligned_cols=65  Identities=15%  Similarity=0.248  Sum_probs=48.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-----ccC---CHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VGG---SPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~~---~~~~~~~~~dvii~~v~~~   67 (257)
                      |||.|.| .|.+|..+++.|++.|++|++.+|++++.+.+  .++.     +.+   ++.++++++|+||-+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC--TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc--CCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            8999998 69999999999999999999999998765433  1211     111   2334556788888877543

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=97.58  E-value=6.2e-05  Score=62.12  Aligned_cols=66  Identities=18%  Similarity=0.141  Sum_probs=53.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~   66 (257)
                      |||.|.|+ |.+|..+++.|.+. |++|++.+|++++.+.+...++...       .++.++++++|+||.+...
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            89999985 99999999999998 9999999999988776655554321       1345567899999998764

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.58  E-value=5.5e-05  Score=64.17  Aligned_cols=67  Identities=10%  Similarity=0.026  Sum_probs=54.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~   69 (257)
                      ++|.|+|.|.+|..+++.|.+.|+ |++.|+++++++ +.+.|..+.    ++++   ++ ++++|.++++++++..
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~  190 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE  190 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHH
Confidence            369999999999999999999999 999999999999 887765431    2332   23 5689999999987743

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=97.58  E-value=0.00024  Score=59.11  Aligned_cols=76  Identities=22%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~~   75 (257)
                      ++.|+|+ |.||..+.++|.+.|++ .++..||.+. +.  -.|+.+..|++|+.+  ++|++++++|.....+.  ...
T Consensus        15 ~v~V~Gasg~~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~~~~~~~v~ea~   91 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPAPFAKDAVFEAI   91 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCHHHHHHHHHHHH
Confidence            5788899 99999999999999998 5566666542 11  147888899999988  89999999998877665  444


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        92 ~~Gi~   96 (294)
T 2yv1_A           92 DAGIE   96 (294)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            56665

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.57  E-value=0.00037  Score=56.66  Aligned_cols=87  Identities=13%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHHC------CCcc--c-----
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVAH------GATV--G-----   47 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~~------g~~~--~-----   47 (257)
                      .+|.|||+|.+|..++.+|+..|. +++++|.+.                   .|++.+++.      ++.+  .     
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~~~~  108 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQRLT  108 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            379999999999999999999996 799987653                   344443321      2221  1     


Q ss_pred             -CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 -GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 -~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                       .+..+.++++|+||.|+.+......   .....+..++.+...
T Consensus       109 ~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~~p~i~~~~~  152 (251)
T 1zud_1          109 GEALKDAVARADVVLDCTDNMATRQEINAACVALNTPLITASAV  152 (251)
T ss_dssp             HHHHHHHHHHCSEEEECCSSHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecc
Confidence             1234567789999999987654332   444567888776543

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=97.57  E-value=3.2e-05  Score=61.05  Aligned_cols=78  Identities=15%  Similarity=0.175  Sum_probs=55.2

Q ss_pred             eEEEEcCChhHHHHHHHH--HHCCCeE-EEEcCCch-hHHH-HHHCCCcc--cCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNL--LRNGFKV-TVWNRTLS-KCDE-LVAHGATV--GGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L--~~~g~~V-~~~~r~~~-~~~~-l~~~g~~~--~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      ++.|+|+|++|..+++.+  .+.|+++ -++|.+++ +... .. .|+.+  .+++.+.++  +.|++++|+|+....+.
T Consensus        86 ~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i-~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~~aq~v  164 (212)
T 3keo_A           86 NVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTE-DGIPVYGISTINDHLIDSDIETAILTVPSTEAQEV  164 (212)
T ss_dssp             EEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCT-TCCBEEEGGGHHHHC-CCSCCEEEECSCGGGHHHH
T ss_pred             EEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeE-CCeEEeCHHHHHHHHHHcCCCEEEEecCchhHHHH
Confidence            689999999999999984  3457774 45699988 6543 11 25443  346666665  58999999998765544


Q ss_pred             --HHHhcCCc
Q 025163           73 --AITSKGGH   80 (257)
Q Consensus        73 --~~~~~g~~   80 (257)
                        .+...|+.
T Consensus       165 ~d~lv~~GIk  174 (212)
T 3keo_A          165 ADILVKAGIK  174 (212)
T ss_dssp             HHHHHHHTCC
T ss_pred             HHHHHHcCCC
Confidence              56667765

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=97.55  E-value=0.00062  Score=60.85  Aligned_cols=120  Identities=13%  Similarity=0.155  Sum_probs=77.8

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccC--CHHHHhhcCceEEEc--cCChHHHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG--SPAEVIKKCTITIGM--LADPAAALSAI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~--~~~~~~~~~dvii~~--v~~~~~~~~~~   74 (257)
                      +||.|||.|..|.. +|+.|.+.|++|+++|.+.. ..+.|.+.|+.+..  +++ .+.++|+||+.  +|.....-...
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~-~~~~~d~vV~Spgi~~~~p~~~~a  101 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPE-NVLDASVVVVSTAISADNPEIVAA  101 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGG-GGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHH-HcCCCCEEEECCCCCCCCHHHHHH
Confidence            37999999999995 99999999999999997644 45667888876543  333 35678999885  45433333356


Q ss_pred             HhcCCcEEeccccCCccccccCcEEEEec--CChhhHHHHHHHHHHhcCC
Q 025163           75 TSKGGHFLEAPVSGSKQPAETGQLVILSA--GEKALYDEAISALNVIGKK  122 (257)
Q Consensus        75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~l~~~~~~  122 (257)
                      ..+|+.+++-+-.-.. ..+.....-+.|  |...+...+..+|+..|.+
T Consensus       102 ~~~gi~v~~~~e~l~~-~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~~  150 (494)
T 4hv4_A          102 REARIPVIRRAEMLAE-LMRYRHGIAVAGTHGKTTTTAMLSSIYAEAGLD  150 (494)
T ss_dssp             HHTTCCEEEHHHHHHH-HHTTSEEEEEECSSSHHHHHHHHHHHHHHTTCC
T ss_pred             HHCCCCEEcHHHHHHH-HhcCCCEEEEecCCChHHHHHHHHHHHHhcCCC
Confidence            6778877764422111 011122233333  2345566788888887753

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.53  E-value=0.00018  Score=61.58  Aligned_cols=85  Identities=19%  Similarity=0.229  Sum_probs=56.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCC-CeEEEEcCCch----hHHHHHHC-----------CCcc-cCCHHHHhh-cCceEEE
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLS----KCDELVAH-----------GATV-GGSPAEVIK-KCTITIG   62 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g-~~V~~~~r~~~----~~~~l~~~-----------g~~~-~~~~~~~~~-~~dvii~   62 (257)
                      ||+|+| .|.+|..+.+.|.++. ++|+.+.+++.    .+......           .... ..+++++.+ ++|+||+
T Consensus        10 kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~   89 (354)
T 1ys4_A           10 KVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFS   89 (354)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEEE
T ss_pred             eEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEEE
Confidence            899999 8999999999998875 47766643221    22221110           1111 125555556 8999999


Q ss_pred             ccCChHHHHH--HHHhcCCcEEeccc
Q 025163           63 MLADPAAALS--AITSKGGHFLEAPV   86 (257)
Q Consensus        63 ~v~~~~~~~~--~~~~~g~~~~~~pv   86 (257)
                      |+|.....+.  .+...|..++|.+-
T Consensus        90 atp~~~~~~~a~~~~~aG~~VId~s~  115 (354)
T 1ys4_A           90 ALPSDLAKKFEPEFAKEGKLIFSNAS  115 (354)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEECCS
T ss_pred             CCCchHHHHHHHHHHHCCCEEEECCc
Confidence            9998766554  55567888998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=97.53  E-value=7e-05  Score=63.40  Aligned_cols=80  Identities=16%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---------Ce-EEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG---------FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g---------~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      |||+|||+|.||..+++.|.+..         .+ +.++||++++.+.+.  .....+|+++++ +.|+|+.|+|+....
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~--~~~~~~d~~~ll-~iDvVve~t~~~~~a   80 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIP--QELLRAEPFDLL-EADLVVEAMGGVEAP   80 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSC--GGGEESSCCCCT-TCSEEEECCCCSHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccC--cccccCCHHHHh-CCCEEEECCCCcHHH
Confidence            37999999999999999998763         34 355688866533221  123566788877 899999999987543


Q ss_pred             HH---HHHhcCCcEEe
Q 025163           71 LS---AITSKGGHFLE   83 (257)
Q Consensus        71 ~~---~~~~~g~~~~~   83 (257)
                      ..   ..-..|.+.+.
T Consensus        81 ~~~~~~AL~aGKhVVt   96 (332)
T 2ejw_A           81 LRLVLPALEAGIPLIT   96 (332)
T ss_dssp             HHHHHHHHHTTCCEEE
T ss_pred             HHHHHHHHHcCCeEEE
Confidence            32   35567888776

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.51  E-value=0.00031  Score=59.88  Aligned_cols=63  Identities=21%  Similarity=0.291  Sum_probs=49.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-cCceEEEcc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~-~~dvii~~v   64 (257)
                      .+++|+|.|++|...++.|...|.+|+++|+++++.+...+.|++.. +.++++. ++|+++-|-
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A  239 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA  239 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH
Confidence            36999999999999999999999999999999776332334566544 5667766 899998664

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=97.47  E-value=7.4e-05  Score=59.33  Aligned_cols=65  Identities=25%  Similarity=0.266  Sum_probs=48.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      |||.|.| .|.+|..+++.|.++|++|++.+|++++.+.+. .++..       ..++.++++++|+||-+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            5799998 599999999999999999999999988754332 12211       11344566788988887754

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=97.46  E-value=0.0003  Score=61.96  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=80.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhH--HHHHHCCCccc--CCHHHHhhcCceEEEcc--CChHHHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAHGATVG--GSPAEVIKKCTITIGML--ADPAAALSAI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~--~~l~~~g~~~~--~~~~~~~~~~dvii~~v--~~~~~~~~~~   74 (257)
                      +||.|||.|..|...|+.|.++|++|+++|......  ..+. .|+++.  ....+.++++|.||++.  |.....-...
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~~~~a   84 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA   84 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHHHHHH
Confidence            579999999999999999999999999998754321  3355 677653  22345666889988864  3221111123


Q ss_pred             HhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEeCCCChH
Q 025163           75 TSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFLGEVGNG  132 (257)
Q Consensus        75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~g~~g~a  132 (257)
                      ...++.++.-.-.....  ...+..-+.|.  ...+...+..+|+..|.++...|++|..
T Consensus        85 ~~~~~~v~~~~~~~~~~--~~~~vI~VTGTnGKTTT~~ml~~iL~~~g~~~~~~gnig~~  142 (439)
T 2x5o_A           85 ADAGIEIVGDIELFCRE--AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLP  142 (439)
T ss_dssp             HHTTCEEECHHHHHHHH--CCSCEEEEECSSSHHHHHHHHHHHHHHTTCCEEEEESSSBC
T ss_pred             HHCCCcEEEHHHHHHHh--cCCCEEEEECCCCHHHHHHHHHHHHHhcCCCEEEecccCHH
Confidence            35666665522110000  11233344443  3456677899999988777666665543

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=97.41  E-value=0.00054  Score=57.12  Aligned_cols=76  Identities=26%  Similarity=0.256  Sum_probs=58.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHHCCCcccCCHHHHhh--c-CceEEEccCChHHHHH--HH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGATVGGSPAEVIK--K-CTITIGMLADPAAALS--AI   74 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~~g~~~~~~~~~~~~--~-~dvii~~v~~~~~~~~--~~   74 (257)
                      ++.|+|+ |.||..+.++|.+.|++ .++..||.+. +.  -.|..+..|++|+.+  . +|++++++|.....+.  ..
T Consensus        15 ~vvV~Gasg~~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~~~~~~v~ea   91 (297)
T 2yv2_A           15 RVLVQGITGREGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAPFAPDAVYEA   91 (297)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGGGHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHHHHHHHHHHH
Confidence            6788898 99999999999999998 4455555532 11  147888899999886  5 9999999998877665  44


Q ss_pred             HhcCCc
Q 025163           75 TSKGGH   80 (257)
Q Consensus        75 ~~~g~~   80 (257)
                      ...|+.
T Consensus        92 ~~~Gi~   97 (297)
T 2yv2_A           92 VDAGIR   97 (297)
T ss_dssp             HHTTCS
T ss_pred             HHCCCC
Confidence            556665

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=97.41  E-value=0.00041  Score=58.60  Aligned_cols=83  Identities=19%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---------CCe-EEEEcCCchhHH-----H-HHH--CCCcccC--CHHHHhh--cCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN---------GFK-VTVWNRTLSKCD-----E-LVA--HGATVGG--SPAEVIK--KCT   58 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~---------g~~-V~~~~r~~~~~~-----~-l~~--~g~~~~~--~~~~~~~--~~d   58 (257)
                      |||+|||+|.||..+++.|.+.         +.+ |.++|+++++.+     . +..  ......+  |++++++  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            4899999999999999999875         445 445688765432     1 111  1223443  8888885  589


Q ss_pred             eEEEccCChHH----HHH--HHHhcCCcEEe
Q 025163           59 ITIGMLADPAA----ALS--AITSKGGHFLE   83 (257)
Q Consensus        59 vii~~v~~~~~----~~~--~~~~~g~~~~~   83 (257)
                      +|+.|+|+...    .+.  .....|.+++.
T Consensus        83 vVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~  113 (327)
T 3do5_A           83 VLIEASVTRVDGGEGVNYIREALKRGKHVVT  113 (327)
T ss_dssp             EEEECCCCC----CHHHHHHHHHTTTCEEEE
T ss_pred             EEEECCCCcccchhHHHHHHHHHHCCCeEEe
Confidence            99999998753    222  44466777655

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.40  E-value=0.00088  Score=55.54  Aligned_cols=101  Identities=20%  Similarity=0.320  Sum_probs=66.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc------------------hhHHHHHH----C--CCcc-------c--
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL------------------SKCDELVA----H--GATV-------G--   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~------------------~~~~~l~~----~--g~~~-------~--   47 (257)
                      ||.|||+|..|+.++.+|++.|. +++++|.+.                  .|++.+++    .  .+++       .  
T Consensus        38 ~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~~l~~~  117 (292)
T 3h8v_A           38 AVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTV  117 (292)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECCCTTSH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecccCCcH
Confidence            79999999999999999999995 799998775                  34443332    1  1211       1  


Q ss_pred             CCHHHHh-----------hcCceEEEccCChHHHHH---HHHhcCCcEEeccccCCccccccCcEEEEecCC
Q 025163           48 GSPAEVI-----------KKCTITIGMLADPAAALS---AITSKGGHFLEAPVSGSKQPAETGQLVILSAGE  105 (257)
Q Consensus        48 ~~~~~~~-----------~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~  105 (257)
                      .+.++.+           +++|+||-|+-+......   .....++.++++.+.+..   ..|+..++..+.
T Consensus       118 ~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn~~~R~~in~~c~~~~~Pli~~gv~~~~---~~Gqv~~~~pg~  186 (292)
T 3h8v_A          118 ENFQHFMDRISNGGLEEGKPVDLVLSCVDNFEARMTINTACNELGQTWMESGVSENA---VSGHIQLIIPGE  186 (292)
T ss_dssp             HHHHHHHHHHHHBSSSTTBCCSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEECTTS---SEEEEEEECTTT
T ss_pred             HHHHHHhhhhcccccccCCCCCEEEECCcchhhhhHHHHHHHHhCCCEEEeeeecce---eEEEEEEECCCC
Confidence            1122332           579999999987655433   455678888887765421   346655665543

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.40  E-value=8.1e-05  Score=66.17  Aligned_cols=64  Identities=13%  Similarity=0.158  Sum_probs=46.7

Q ss_pred             CeEEEEcCChhHHH--HHHHHHHC------CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKA--ISMNLLRN------GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~--la~~L~~~------g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+.|.+  +...++..      +.+|.++|+++++++....        .|    +..++|..+++++||+|
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~~~~~~~~~~~~~~~i~~t~d~~eAl~gAD~V   80 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYILARKYVEELNSPVKVVKTESLDEAIEGADFI   80 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHHHHHHHHHHHTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHhCCCCEE
Confidence            89999999998755  33334422      3479999999987654211        13    34567999999999999


Q ss_pred             EEcc
Q 025163           61 IGML   64 (257)
Q Consensus        61 i~~v   64 (257)
                      |++.
T Consensus        81 i~~~   84 (477)
T 3u95_A           81 INTA   84 (477)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            9986

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=97.39  E-value=0.0002  Score=60.39  Aligned_cols=65  Identities=14%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+.++...       .++.++++++|+||-+..
T Consensus        14 M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~   86 (342)
T 2x4g_A           14 VKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG   86 (342)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence            68999985 999999999999999999999999887665544343221       134456778999998865

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=97.38  E-value=0.00039  Score=58.93  Aligned_cols=66  Identities=20%  Similarity=0.262  Sum_probs=50.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc----hhHH---HHHHCCCccc-------CCHHHHhh--cCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL----SKCD---ELVAHGATVG-------GSPAEVIK--KCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~----~~~~---~l~~~g~~~~-------~~~~~~~~--~~dvii~~   63 (257)
                      |+|.|.|+ |.+|..++..|.+.|++|++.+|++    ++.+   .+...++...       .++.++++  ++|+||.+
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~   90 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVST   90 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEEC
Confidence            47999998 9999999999999999999999976    4444   3344454331       23445667  89999998


Q ss_pred             cCC
Q 025163           64 LAD   66 (257)
Q Consensus        64 v~~   66 (257)
                      ...
T Consensus        91 a~~   93 (346)
T 3i6i_A           91 VGG   93 (346)
T ss_dssp             CCG
T ss_pred             Cch
Confidence            764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=97.37  E-value=0.00043  Score=57.47  Aligned_cols=66  Identities=21%  Similarity=0.349  Sum_probs=49.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc------hhHH---HHHHCCCccc-------CCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL------SKCD---ELVAHGATVG-------GSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~------~~~~---~l~~~g~~~~-------~~~~~~~~~~dvii~~   63 (257)
                      |+|.|+|+ |.+|..+++.|++.|++|++.+|++      ++.+   .+...|+...       .++.++++++|+||.+
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~   84 (308)
T 1qyc_A            5 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   84 (308)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEEC
Confidence            46999986 9999999999999999999999974      3333   2333455331       1344567889999998


Q ss_pred             cCC
Q 025163           64 LAD   66 (257)
Q Consensus        64 v~~   66 (257)
                      ...
T Consensus        85 a~~   87 (308)
T 1qyc_A           85 VGS   87 (308)
T ss_dssp             CCG
T ss_pred             Ccc
Confidence            764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=97.37  E-value=7.4e-05  Score=59.95  Aligned_cols=65  Identities=17%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      +|.|.| .|.+|..+++.|++.| ++|++++|++++.+.+...++..       ..++.++++++|+||.+...
T Consensus        25 ~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           25 NVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             EEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            578888 6999999999999999 89999999988765443333221       11234456778888876654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=97.35  E-value=0.00053  Score=56.07  Aligned_cols=116  Identities=15%  Similarity=0.290  Sum_probs=75.2

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|.++|..|...|.+|++++++              +.++.+.++++|+||.+++.+..+....-..|..
T Consensus       152 ~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  217 (276)
T 3ngx_A          152 TVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPGFLNREMVTPGSV  217 (276)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTTCBCGGGCCTTCE
T ss_pred             EEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCccccHhhccCCcE
Confidence            689999985 8999999999999999999874              2578889999999999998765433333355777


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+..     ..+.   ++ ||-+ |+.+++....+..   .-|.+|.-...-+..|++.+
T Consensus       218 VIDvgi~~-----~~gk---l~-GDVd-f~~v~~~a~~iTP---VPGGVGpmT~a~Ll~n~v~a  268 (276)
T 3ngx_A          218 VIDVGINY-----VNDK---VV-GDAN-FEDLSEYVEAITP---VPGGVGPITATNILENVVKA  268 (276)
T ss_dssp             EEECCCEE-----ETTE---EE-CSBC-HHHHHTTSSEECC---TTTSSHHHHHHHHHHHHHHH
T ss_pred             EEEeccCc-----cCCc---ee-cccc-HHHHhhhceEeCC---CCCcChHHHHHHHHHHHHHH
Confidence            77766543     1232   22 3333 2334433221111   12335666666666776543

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.35  E-value=0.00028  Score=62.10  Aligned_cols=86  Identities=16%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-C---eEEEEcCCchhHHHHHHCCCc-----c-cCCHH----HHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-F---KVTVWNRTLSKCDELVAHGAT-----V-GGSPA----EVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~---~V~~~~r~~~~~~~l~~~g~~-----~-~~~~~----~~~~~~dvii~~v~~   66 (257)
                      |||.|||+|.||+.++..|+++. +   +|++.|.+....+.....|.+     + .++..    .++++.|+||-+.+.
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~s~~   93 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDVSIG   93 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEECCSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEEEECCcc
Confidence            58999999999999999999875 3   689888876543322222432     2 23332    344556999988877


Q ss_pred             hHHHHH--HHHhcCCcEEeccc
Q 025163           67 PAAALS--AITSKGGHFLEAPV   86 (257)
Q Consensus        67 ~~~~~~--~~~~~g~~~~~~pv   86 (257)
                      ......  .....|++|+|-.+
T Consensus        94 ~~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           94 ISSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             SCHHHHHHHHHHHTCEEEESSC
T ss_pred             ccCHHHHHHHHHcCCCEEECCC
Confidence            766554  67788999999665

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=97.35  E-value=0.0002  Score=58.87  Aligned_cols=66  Identities=17%  Similarity=0.270  Sum_probs=52.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..++..|.+.  |++|++.+|++++.+.+...++...       .++.++++++|+||-+...
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   76 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGP   76 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCC
Confidence            78999987 99999999999998  9999999999888877766554321       1344567789999987653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=97.35  E-value=0.00035  Score=57.97  Aligned_cols=66  Identities=20%  Similarity=0.248  Sum_probs=50.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc-------hhHHHH---HHCCCccc-------CCHHHHhhcCceEEE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL-------SKCDEL---VAHGATVG-------GSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~-------~~~~~l---~~~g~~~~-------~~~~~~~~~~dvii~   62 (257)
                      |+|.|.|+ |.+|..+++.|++.|++|++.+|++       ++.+.+   ...|+...       .++.++++++|+||.
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   82 (307)
T 2gas_A            3 NKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVIC   82 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             cEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEE
Confidence            57999986 9999999999999999999999987       554433   34455321       134456788999999


Q ss_pred             ccCC
Q 025163           63 MLAD   66 (257)
Q Consensus        63 ~v~~   66 (257)
                      +...
T Consensus        83 ~a~~   86 (307)
T 2gas_A           83 AAGR   86 (307)
T ss_dssp             CSSS
T ss_pred             CCcc
Confidence            8764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=97.34  E-value=0.00044  Score=57.78  Aligned_cols=65  Identities=28%  Similarity=0.370  Sum_probs=49.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch-hHH---HHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS-KCD---ELVAHGATVG-------GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~-~~~---~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~   66 (257)
                      +|.|.|+ |.+|..+++.|++.|++|++.+|+++ +.+   .+...|+...       .++.++++++|+||.+...
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             eEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            7999985 99999999999999999999999875 433   3344565431       1345667889999998764

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.34  E-value=0.00047  Score=58.74  Aligned_cols=85  Identities=12%  Similarity=0.103  Sum_probs=56.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH-----CC--CcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-----HG--ATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~-----~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|+| .|.+|..+.+.|.++.+ +++.+.+..+.-+++.+     .|  -....+.++ +.++|+||+|+|.....+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s~~   83 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVFAR   83 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHHHH
Confidence            4799999 69999999999998765 76666543332111211     01  111223334 478999999999887655


Q ss_pred             H--HHHhcCCcEEeccc
Q 025163           72 S--AITSKGGHFLEAPV   86 (257)
Q Consensus        72 ~--~~~~~g~~~~~~pv   86 (257)
                      .  .+...|..+++.+-
T Consensus        84 ~a~~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           84 EFDRYSALAPVLVDLSA  100 (345)
T ss_dssp             THHHHHTTCSEEEECSS
T ss_pred             HHHHHHHCCCEEEEcCc
Confidence            4  45567888888654

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=97.34  E-value=0.00043  Score=57.35  Aligned_cols=65  Identities=29%  Similarity=0.278  Sum_probs=50.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CeEEEEcCCchhH--HHHHHCCCccc-------CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKC--DELVAHGATVG-------GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~~V~~~~r~~~~~--~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..+++.|.+.| ++|++.+|++++.  +.+...|+...       .++.++++++|+||.+..
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            46999987 999999999999998 9999999997764  44555555321       134456788999998875

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=97.34  E-value=0.00046  Score=57.70  Aligned_cols=66  Identities=23%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc------hhHHH---HHHCCCccc-------CCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL------SKCDE---LVAHGATVG-------GSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~------~~~~~---l~~~g~~~~-------~~~~~~~~~~dvii~~   63 (257)
                      |+|.|.|+ |.+|..+++.|++.|++|++.+|++      ++.+.   +...++...       .++.++++++|+||.|
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~   84 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISA   84 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEEC
Confidence            57999985 9999999999999999999999986      33333   334454321       1345667889999998


Q ss_pred             cCC
Q 025163           64 LAD   66 (257)
Q Consensus        64 v~~   66 (257)
                      ...
T Consensus        85 a~~   87 (321)
T 3c1o_A           85 LPF   87 (321)
T ss_dssp             CCG
T ss_pred             CCc
Confidence            764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=97.33  E-value=0.00052  Score=57.07  Aligned_cols=66  Identities=26%  Similarity=0.272  Sum_probs=49.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc-----hhHHHH---HHCCCccc-------CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL-----SKCDEL---VAHGATVG-------GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~-----~~~~~l---~~~g~~~~-------~~~~~~~~~~dvii~~v   64 (257)
                      |+|.|.|+ |.+|..++..|.+.|++|++.+|++     ++.+.+   ...++...       .++.++++++|+||.+.
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a   84 (313)
T 1qyd_A            5 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   84 (313)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECC
Confidence            57999985 9999999999999999999999983     444433   33454321       13456678899999987


Q ss_pred             CC
Q 025163           65 AD   66 (257)
Q Consensus        65 ~~   66 (257)
                      ..
T Consensus        85 ~~   86 (313)
T 1qyd_A           85 AG   86 (313)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.31  E-value=0.00041  Score=58.77  Aligned_cols=85  Identities=11%  Similarity=0.101  Sum_probs=56.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCeEEEEcCCc---h---hHHH----HHHC-CCcccC--CHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTL---S---KCDE----LVAH-GATVGG--SPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~~V~~~~r~~---~---~~~~----l~~~-g~~~~~--~~~~~~~~~dvii~~v~   65 (257)
                      |||+|+| .|.+|..+.+.|.++ .+++..+..+.   +   ++.+    +... ...+..  +.++..+++|+||+|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            4899999 599999999999985 45776663322   2   2222    1111 222222  45555489999999999


Q ss_pred             ChHHHHH--HHHhcCCcEEecc
Q 025163           66 DPAAALS--AITSKGGHFLEAP   85 (257)
Q Consensus        66 ~~~~~~~--~~~~~g~~~~~~p   85 (257)
                      .....+.  .+...|...+|..
T Consensus        85 ~~~s~~~~~~~~~~g~~vIDlS  106 (337)
T 3dr3_A           85 HEVSHDLAPQFLEAGCVVFDLS  106 (337)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECS
T ss_pred             hHHHHHHHHHHHHCCCEEEEcC
Confidence            8776554  5567788888743

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.29  E-value=0.00037  Score=58.89  Aligned_cols=64  Identities=13%  Similarity=0.157  Sum_probs=47.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCc--hhH----HHHHHCC------CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKC----DELVAHG------ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~--~~~----~~l~~~g------~~~~~~~~~~~~~~dvi   60 (257)
                      |||.|+|+ |.+|+.++..|.+.|+       +|+++|+++  ++.    .++.+..      +....+..++++++|+|
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~~~~D~V   84 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHhCCCCEE
Confidence            58999997 9999999999999986       899999974  222    2333211      12235677888999999


Q ss_pred             EEcc
Q 025163           61 IGML   64 (257)
Q Consensus        61 i~~v   64 (257)
                      |.+.
T Consensus        85 ih~A   88 (327)
T 1y7t_A           85 LLVG   88 (327)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9874

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.28  E-value=0.00043  Score=58.14  Aligned_cols=65  Identities=20%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcC--CchhHHH----HHH----CC--Cccc--C-CHHHHhhcCceEEE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNR--TLSKCDE----LVA----HG--ATVG--G-SPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r--~~~~~~~----l~~----~g--~~~~--~-~~~~~~~~~dvii~   62 (257)
                      |||+|+|+ |.+|..++..|...|+  ++.++|+  ++++++.    +.+    .+  ..+.  + ++.++++++|+||.
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~l~~al~gaD~Vi~   80 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeCCcchHHHhCCCCEEEE
Confidence            89999999 9999999999998885  6999999  7654432    222    11  1222  1 24778899999999


Q ss_pred             ccC
Q 025163           63 MLA   65 (257)
Q Consensus        63 ~v~   65 (257)
                      +.-
T Consensus        81 ~Ag   83 (313)
T 1hye_A           81 TSG   83 (313)
T ss_dssp             CCS
T ss_pred             CCC
Confidence            863

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.28  E-value=0.00036  Score=59.75  Aligned_cols=84  Identities=13%  Similarity=0.177  Sum_probs=55.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH-----CCC---cc-cCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-----HGA---TV-GGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~-----~g~---~~-~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+| .|.+|..+.+.|.++.. ++..+....+.-+++..     .|.   .. ..+ ++..+++|+||+|+|....
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~s   95 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGTT   95 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTTH
T ss_pred             cEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchhH
Confidence            3799999 89999999999998764 76666443322112211     121   11 112 3445689999999998876


Q ss_pred             HHH--HHHhcCCcEEeccc
Q 025163           70 ALS--AITSKGGHFLEAPV   86 (257)
Q Consensus        70 ~~~--~~~~~g~~~~~~pv   86 (257)
                      .+.  .+ ..|..++|.+-
T Consensus        96 ~~~a~~~-~aG~~VId~sa  113 (359)
T 1xyg_A           96 QEIIKEL-PTALKIVDLSA  113 (359)
T ss_dssp             HHHHHTS-CTTCEEEECSS
T ss_pred             HHHHHHH-hCCCEEEECCc
Confidence            665  44 66888888653

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=97.27  E-value=0.00019  Score=59.49  Aligned_cols=58  Identities=24%  Similarity=0.289  Sum_probs=42.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      |||.|.|+ |.+|+.+++.|.++||+|++..|+++..+      +.......+.++++|.||=+.
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~~------~~~~~~~~~~l~~~d~vihla   59 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPGR------ITWDELAASGLPSCDAAVNLA   59 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTE------EEHHHHHHHCCCSCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcCe------eecchhhHhhccCCCEEEEec
Confidence            99999987 99999999999999999999999865311      111111123456788887654

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.25  E-value=0.00071  Score=59.03  Aligned_cols=68  Identities=13%  Similarity=0.100  Sum_probs=46.3

Q ss_pred             CeEEEEcCChh-HHHHHHHHHH--C---CCeEEEEcCCchhHHHHH---H----CCC--cccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIM-GKAISMNLLR--N---GFKVTVWNRTLSKCDELV---A----HGA--TVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~m-G~~la~~L~~--~---g~~V~~~~r~~~~~~~l~---~----~g~--~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.. +..+...|+.  .   +.+|.++|+++++++...   .    ...  ..+.|..+++++||+||++.-
T Consensus         3 ~KI~IIGaG~v~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~~~~~~~~~~~~v~~t~d~~~al~~AD~Viitag   82 (417)
T 1up7_A            3 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   82 (417)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHHHHHHHhhCCeEEEEeCCHHHHhCCCCEEEEcCC
Confidence            79999999985 2222334454  3   568999999998765421   1    112  234677788999999999985


Q ss_pred             ChH
Q 025163           66 DPA   68 (257)
Q Consensus        66 ~~~   68 (257)
                      .+.
T Consensus        83 vg~   85 (417)
T 1up7_A           83 PGG   85 (417)
T ss_dssp             TTH
T ss_pred             CCC
Confidence            543

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=97.24  E-value=0.0007  Score=55.49  Aligned_cols=72  Identities=17%  Similarity=0.301  Sum_probs=57.2

Q ss_pred             eEEEEcCChh-HHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcC
Q 025163            2 EVGFLGLGIM-GKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKG   78 (257)
Q Consensus         2 kI~iIG~G~m-G~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g   78 (257)
                      ++.|||.|.+ |..++..|...  |.+|++++++.              .++.+.++++|+||.+++.+.......-..|
T Consensus       160 ~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~G  225 (281)
T 2c2x_A          160 HVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAHLLTADMVRPG  225 (281)
T ss_dssp             EEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTTCBCGGGSCTT
T ss_pred             EEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCcccCHHHcCCC
Confidence            6899999986 99999999999  88999998754              4788889999999999987754333223457


Q ss_pred             CcEEecccc
Q 025163           79 GHFLEAPVS   87 (257)
Q Consensus        79 ~~~~~~pv~   87 (257)
                      ..++|..+.
T Consensus       226 avVIDVgi~  234 (281)
T 2c2x_A          226 AAVIDVGVS  234 (281)
T ss_dssp             CEEEECCEE
T ss_pred             cEEEEccCC
Confidence            778886654

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.22  E-value=0.00065  Score=56.24  Aligned_cols=122  Identities=19%  Similarity=0.304  Sum_probs=74.8

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHH--HHhhcCceEEEccCChHHHHHHHHhcC
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPA--EVIKKCTITIGMLADPAAALSAITSKG   78 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~--~~~~~~dvii~~v~~~~~~~~~~~~~g   78 (257)
                      ++.|||.|. +|.+++..|...|.+|++++|...              +++  +.++++|+||.+++.+..+....-..|
T Consensus       167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~I~~~~vk~G  232 (300)
T 4a26_A          167 RAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGYVKGEWIKEG  232 (300)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTCBCGGGSCTT
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCCCcHHhcCCC
Confidence            689999887 799999999999999999998432              344  788999999999997654333233557


Q ss_pred             CcEEeccccCCcccc-ccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           79 GHFLEAPVSGSKQPA-ETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        79 ~~~~~~pv~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ..++|..+..-+... ..+.  -++ ||-+ |+.+++.-..+..   .-|.+|.-...-+..|++.+
T Consensus       233 avVIDvgi~~~~~~~~~~g~--kl~-GDVd-f~~v~~~a~~iTP---VPGGVGpmT~a~Ll~Ntv~a  292 (300)
T 4a26_A          233 AAVVDVGTTPVPDPSRKDGY--RLV-GDVC-FEEAAARAAWISP---VPGGVGPMTIAMLLENTLEA  292 (300)
T ss_dssp             CEEEECCCEEESCSCSTTSC--EEE-CSBC-HHHHTTTCSEEEC---TTTSSSHHHHHHHHHHHHHH
T ss_pred             cEEEEEeccCCcCCcccCCc--eee-cCcc-HHHHHhhceEeCC---CCCcChHHHHHHHHHHHHHH
Confidence            777776543211110 1111  122 3333 2333333211111   12336776777777777643

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=97.20  E-value=0.00059  Score=56.48  Aligned_cols=65  Identities=22%  Similarity=0.207  Sum_probs=49.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcc----cCC---HHHHhhcCceEEEccCC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV----GGS---PAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~----~~~---~~~~~~~~dvii~~v~~   66 (257)
                      ++.|+| +|.+|.+++..|++.|.+|++++|++++.+++.+.     ++..    ..+   ..++++..|+||-|++.
T Consensus       121 ~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~ag~  198 (287)
T 1lu9_A          121 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGAI  198 (287)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCCT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECCCc
Confidence            578889 99999999999999999999999998887766432     2211    112   34556778999988863

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.19  E-value=0.00043  Score=58.64  Aligned_cols=64  Identities=14%  Similarity=0.089  Sum_probs=48.6

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--e-----EEEEcCCch--h----HHHHHHCC------CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF--K-----VTVWNRTLS--K----CDELVAHG------ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~--~-----V~~~~r~~~--~----~~~l~~~g------~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|+| +|.+|..++..|+..|.  +     +.++|+++.  +    ..+|..-.      +....+..++++++|+|
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~~daDvV   83 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHhCCCCEE
Confidence            5899999 79999999999998775  5     999999742  2    23444421      23455677888999999


Q ss_pred             EEcc
Q 025163           61 IGML   64 (257)
Q Consensus        61 i~~v   64 (257)
                      |++.
T Consensus        84 vitA   87 (333)
T 5mdh_A           84 ILVG   87 (333)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            9975

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=97.19  E-value=0.00034  Score=59.86  Aligned_cols=153  Identities=14%  Similarity=0.152  Sum_probs=87.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeE-EEEcCCchhHHHHHHC--CCcccCCHHHHhhc-----------------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKV-TVWNRTLSKCDELVAH--GATVGGSPAEVIKK-----------------   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V-~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~-----------------   56 (257)
                      |||+|||+|.||..++..|.+..    .+| .++|++...   +.+.  |+...+++.+++++                 
T Consensus         5 i~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~~~---~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~   81 (358)
T 1ebf_A            5 VNVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSL---ISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKT   81 (358)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEE---ECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTT
T ss_pred             EEEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECChhh---hccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhh
Confidence            48999999999999999999863    344 445654321   2222  44433455554432                 


Q ss_pred             ---CceEEEccCChHHHHH--HHHhcCCcEEe---ccccCCcc------ccccCcEEEEe----cCChhhHHHHHHHHHH
Q 025163           57 ---CTITIGMLADPAAALS--AITSKGGHFLE---APVSGSKQ------PAETGQLVILS----AGEKALYDEAISALNV  118 (257)
Q Consensus        57 ---~dvii~~v~~~~~~~~--~~~~~g~~~~~---~pv~~~~~------~~~~~~~~~~~----~g~~~~~~~~~~~l~~  118 (257)
                         .|+|+.|+|+....+.  ..-..|.+++.   .|+.....      .+++....+..    ++--..++.+++.+..
T Consensus        82 ~~~~DvVV~~t~~~~~a~~~~~AL~aGkhVVtaNkkpla~~~~~~~eL~~A~~~gv~~~~Ea~vg~giPii~~l~~~l~~  161 (358)
T 1ebf_A           82 SPKPVILVDNTSSAYIAGFYTKFVENGISIATPNKKAFSSDLATWKALFSNKPTNGFVYHEATVGAGLPIISFLREIIQT  161 (358)
T ss_dssp             CSSCEEEEECSCCHHHHTTHHHHHHTTCEEECCCCGGGSSCHHHHHHHTCCCTTCCCEECGGGTTTTSSCHHHHHHHHHH
T ss_pred             ccCCcEEEEcCCChHHHHHHHHHHHCCCeEEecCcccccCCHHHHHHHHHHHHcCCEEEEccccccCCcHHHHHHHHHHc
Confidence               2799999998865443  45567888877   46654321      12222212322    1222467778877743


Q ss_pred             hcCCeEEeCCCChHHHHHHHHHHHHHHHH------HHHHHHHHHHHHcCC
Q 025163          119 IGKKAFFLGEVGNGAKMKLVVNMIMGCMM------NTFSEGLVLAEKSGL  162 (257)
Q Consensus       119 ~~~~~~~~g~~g~a~~~kl~~n~~~~~~~------~~~~E~~~l~~~~g~  162 (257)
                       |.++..+..+-++..     |++..-+.      ..+.|++.-+++.|.
T Consensus       162 -G~~I~~I~GIlnGT~-----nyil~~m~~~~~~g~~f~~~l~eAq~~Gy  205 (358)
T 1ebf_A          162 -GDEVEKIEGIFSGTL-----SYIFNEFSTSQANDVKFSDVVKVAKKLGY  205 (358)
T ss_dssp             -TCCEEEEEEECCHHH-----HHHHHHHSCSSCCCCCHHHHHHHHHHHTC
T ss_pred             -CCCeEEEEEEEeecc-----eeeecccccccccCCCHHHHHHHHHHcCC
Confidence             335544433223322     33333221      356777777888885

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.18  E-value=0.0011  Score=54.47  Aligned_cols=72  Identities=19%  Similarity=0.226  Sum_probs=56.2

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|.+++..|...|.+|++++++              +.++.+.++++|+||.+++.+..+....-..|..
T Consensus       163 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  228 (285)
T 3l07_A          163 YAVVVGASNVVGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNFITADMVKEGAV  228 (285)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCE
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCCCCHHHcCCCcE
Confidence            689999987 7999999999999999999874              2367788999999999998764433323345677


Q ss_pred             EEecccc
Q 025163           81 FLEAPVS   87 (257)
Q Consensus        81 ~~~~pv~   87 (257)
                      .+|..+.
T Consensus       229 VIDvgi~  235 (285)
T 3l07_A          229 VIDVGIN  235 (285)
T ss_dssp             EEECCCE
T ss_pred             EEEeccc
Confidence            7776543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.18  E-value=0.0012  Score=56.56  Aligned_cols=65  Identities=22%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC----chh----H----HHHHHC--CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT----LSK----C----DELVAH--GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~----~~~----~----~~l~~~--g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||.|+|+|.+|..+++.|...|. +|+++||+    .++    +    +.+.+.  ......++.|+++++|++|-+..
T Consensus       193 ~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa  272 (388)
T 1vl6_A          193 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR  272 (388)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC
Confidence            379999999999999999999997 79999998    554    2    333332  12234579999999999988765

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=97.18  E-value=0.0002  Score=58.96  Aligned_cols=61  Identities=20%  Similarity=0.245  Sum_probs=46.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhc-CceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKK-CTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~-~dvii~~v~   65 (257)
                      |||.|.|+|.+|..++..|.+.|++|++.+|++++..    .++..       ..++.+++++ +|+||-+..
T Consensus         4 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            4 SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPMP----AGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCCC----TTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccccc----cCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            5899999999999999999999999999999877532    22221       1223345555 999998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=97.17  E-value=0.00065  Score=56.54  Aligned_cols=63  Identities=11%  Similarity=0.227  Sum_probs=46.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..++..|.++|++|++.+|+++..+ +...     .+. ..++.++++++|+||-|..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence            5899998 599999999999999999999999855544 4311     122 3345667789999998864

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=97.17  E-value=0.00096  Score=54.87  Aligned_cols=117  Identities=19%  Similarity=0.301  Sum_probs=75.6

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|..+|..|...|.+|++++++.              .++.+.++++|+||.+++.+..+....-..|..
T Consensus       161 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~lI~~~~vk~Gav  226 (288)
T 1b0a_A          161 NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIPGDWIKEGAI  226 (288)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBCTTTSCTTCE
T ss_pred             EEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcCcCCHHHcCCCcE
Confidence            689999997 69999999999999999998653              467888899999999999775433222356777


Q ss_pred             EEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHHH
Q 025163           81 FLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIMG  144 (257)
Q Consensus        81 ~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~~  144 (257)
                      ++|..+....    .|.    ..||-+ |+.+++.-..+..   .-|.+|.-...-+..|++.+
T Consensus       227 VIDVgi~r~~----~g~----l~GDVd-f~~v~~~a~~iTP---VPGGVGpmT~a~Ll~Ntv~a  278 (288)
T 1b0a_A          227 VIDVGINRLE----NGK----VVGDVV-FEDAAKRASYITP---VPGGVGPMTVATLIENTLQA  278 (288)
T ss_dssp             EEECCCEECT----TSC----EECSBC-HHHHHHHCSEECC---SSSSSHHHHHHHHHHHHHHH
T ss_pred             EEEccCCccC----CCC----ccCCcC-HHHHhhhccEecC---CCCCccHHHHHHHHHHHHHH
Confidence            8886654322    122    224433 2344444222211   12335655666666676543

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=97.15  E-value=0.0017  Score=54.88  Aligned_cols=83  Identities=17%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC------C--CeE-EEEcCCchhHHH------HH----HCCCc-ccC---CHHHHh-hc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN------G--FKV-TVWNRTLSKCDE------LV----AHGAT-VGG---SPAEVI-KK   56 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~------g--~~V-~~~~r~~~~~~~------l~----~~g~~-~~~---~~~~~~-~~   56 (257)
                      +||+|||+|.||..++..|.+.      |  .+| .++||++++.+.      +.    ..++. ..+   |+++++ .+
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~   86 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD   86 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence            3799999999999999999764      2  454 556888765433      21    12332 344   888877 35


Q ss_pred             CceEEEccCCh----HHHHH--HHHhcCCcEEe
Q 025163           57 CTITIGMLADP----AAALS--AITSKGGHFLE   83 (257)
Q Consensus        57 ~dvii~~v~~~----~~~~~--~~~~~g~~~~~   83 (257)
                      .|+|+.|+|+.    .+.+.  .....|.+.+.
T Consensus        87 iDvVv~~t~~~~~~~~~~~~~~~AL~aGkhVvt  119 (331)
T 3c8m_A           87 FDIVVDATPASADGKKELAFYKETFENGKDVVT  119 (331)
T ss_dssp             CSEEEECSCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred             CCEEEECCCCCCccchHHHHHHHHHHCCCeEEe
Confidence            79999999984    33322  45567888776

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=97.15  E-value=0.0016  Score=53.45  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |+|.|||.|.+|...+..|.+.|++|++++.+.
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            579999999999999999999999999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.14  E-value=0.00043  Score=59.62  Aligned_cols=34  Identities=38%  Similarity=0.744  Sum_probs=32.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||.|||+|..|..+|..|+++|++|++++|+++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~   35 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSA   35 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            8999999999999999999999999999988654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=97.14  E-value=0.0013  Score=54.47  Aligned_cols=73  Identities=16%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|..+|..|...|.+|++++++              +.++.+.++++|+||.+++.+..+....-..|..
T Consensus       167 ~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  232 (301)
T 1a4i_A          167 HAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPEMVKGEWIKPGAI  232 (301)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTCBCGGGSCTTCE
T ss_pred             EEEEECCCchHHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCcccCCHHHcCCCcE
Confidence            689999996 7999999999999999999864              2477888999999999999875433323346788


Q ss_pred             EEeccccC
Q 025163           81 FLEAPVSG   88 (257)
Q Consensus        81 ~~~~pv~~   88 (257)
                      ++|..+..
T Consensus       233 VIDVgi~~  240 (301)
T 1a4i_A          233 VIDCGINY  240 (301)
T ss_dssp             EEECCCBC
T ss_pred             EEEccCCC
Confidence            88876643

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.13  E-value=0.0012  Score=56.12  Aligned_cols=63  Identities=19%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCchh--H----HHHHHC------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--C----DELVAH------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~~--~----~~l~~~------g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|+|+ |.+|.+++..|+....       ++.++|+++..  +    .+|..-      .+...+++.++++++|+||
T Consensus        26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~~~a~~~advVv  105 (345)
T 4h7p_A           26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADPRVAFDGVAIAI  105 (345)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCChHHHhCCCCEEE
Confidence            8999996 9999999999987643       79999997642  2    234332      2345668888999999999


Q ss_pred             Ecc
Q 025163           62 GML   64 (257)
Q Consensus        62 ~~v   64 (257)
                      ++-
T Consensus       106 i~a  108 (345)
T 4h7p_A          106 MCG  108 (345)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            975

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.12  E-value=0.0011  Score=56.51  Aligned_cols=85  Identities=12%  Similarity=0.216  Sum_probs=54.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC-CeEEEEc-CCchhHHHHHH--------------CCCcccC-CHHHHhhcCceEEE
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNG-FKVTVWN-RTLSKCDELVA--------------HGATVGG-SPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g-~~V~~~~-r~~~~~~~l~~--------------~g~~~~~-~~~~~~~~~dvii~   62 (257)
                      |||+|+| .|.+|..+.+.|.++. .+|+.+. .+.+.-+.+.+              ....... ++++ ++++|+||+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            3799999 7999999999998765 3666653 22221111110              1112221 3444 378999999


Q ss_pred             ccCChHHHHH--HHHhcCCcEEeccc
Q 025163           63 MLADPAAALS--AITSKGGHFLEAPV   86 (257)
Q Consensus        63 ~v~~~~~~~~--~~~~~g~~~~~~pv   86 (257)
                      |+|.....+.  .+...|..++|.+-
T Consensus        84 atp~~~s~~~a~~~~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNELAESIELELVKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHHHHHHHHHHHHHTTCEEEECSS
T ss_pred             CCChHHHHHHHHHHHHCCCEEEECCc
Confidence            9998766554  55567888998663

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.08  E-value=0.0016  Score=53.46  Aligned_cols=72  Identities=14%  Similarity=0.185  Sum_probs=56.0

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|.++|..|...|.+|++++++.              .++.+.++.+|+||.+++.+..+....-..|..
T Consensus       162 ~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  227 (285)
T 3p2o_A          162 DAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRSDMVKEGVI  227 (285)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHTTCSEEEECSSCTTCBCGGGSCTTEE
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhhcCCEEEECCCCCCcCCHHHcCCCeE
Confidence            689999987 69999999999999999998742              467788999999999998764433323345666


Q ss_pred             EEecccc
Q 025163           81 FLEAPVS   87 (257)
Q Consensus        81 ~~~~pv~   87 (257)
                      .+|..+.
T Consensus       228 VIDVgi~  234 (285)
T 3p2o_A          228 VVDVGIN  234 (285)
T ss_dssp             EEECCCE
T ss_pred             EEEeccC
Confidence            7775543

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=97.04  E-value=0.00071  Score=55.43  Aligned_cols=65  Identities=17%  Similarity=0.284  Sum_probs=50.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCccc-------CCHHHHhhcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVG-------GSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v~~   66 (257)
                      ||.|.|+ |.+|..+++.|.+.  |++|++.+|++++.+.+...++...       .++.++++++|+||-+...
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~   75 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISSS   75 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC--
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            5788986 99999999999998  9999999999888777766554321       1344567789999987653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=97.04  E-value=0.0004  Score=55.58  Aligned_cols=67  Identities=22%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~~   67 (257)
                      |+|.|.| .|.+|..+++.|++.|+  +|++++|++++.+.+...++..       ..++.+++++.|+||-|....
T Consensus        19 ~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           19 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            4688888 59999999999999999  9999999887654332222211       123445667889999887643

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=97.04  E-value=0.00091  Score=55.93  Aligned_cols=68  Identities=24%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             eEEEE-cC-ChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            2 EVGFL-GL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iI-G~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      +++|| |+ |.+|...+++|.+.|++ .+++.||.+.. .  -.|..+..|++|+.+  ..|++++++|.....+.
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~~~~~~~   87 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAA   87 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCHHHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCHHHHHHH
Confidence            47888 98 99999999999999999 44555555321 1  247888889999988  89999999998876665

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=97.03  E-value=0.0021  Score=54.60  Aligned_cols=82  Identities=15%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEE-EcCCchhHHHHH---------------------HCCCcccCCHHHHhhcCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELV---------------------AHGATVGGSPAEVIKKCT   58 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r~~~~~~~l~---------------------~~g~~~~~~~~~~~~~~d   58 (257)
                      ||||+|+|.+|..+++.|.++ +++|.. .|++++....+.                     +.++.+..++.+...++|
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD   83 (343)
T 2yyy_A            4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD   83 (343)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence            899999999999999999887 467554 455544433222                     223333334555557899


Q ss_pred             eEEEccCChHHHHH---HHHhcCCcEEe
Q 025163           59 ITIGMLADPAAALS---AITSKGGHFLE   83 (257)
Q Consensus        59 vii~~v~~~~~~~~---~~~~~g~~~~~   83 (257)
                      +||.|+|.....+.   .....|...+.
T Consensus        84 iV~eatg~~~s~~~a~~~~l~aG~~VI~  111 (343)
T 2yyy_A           84 IVVDGAPKKIGKQNLENIYKPHKVKAIL  111 (343)
T ss_dssp             EEEECCCTTHHHHHHHHTTTTTTCEEEE
T ss_pred             EEEECCCccccHHHHHHHHHHCCCEEEE
Confidence            99999998764442   22345666554

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=97.02  E-value=0.0011  Score=53.03  Aligned_cols=64  Identities=16%  Similarity=0.115  Sum_probs=45.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCcc-----c--CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV-----G--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..+++.|++.  |++|++.+|++++.+.+ ..++..     .  .++.+++++.|+||-+..
T Consensus         5 ~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            5 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            5788887 599999999999999  89999999998876654 222221     1  123345566777776654

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.02  E-value=0.0025  Score=54.07  Aligned_cols=70  Identities=19%  Similarity=0.257  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+... .+.++..+..|++|-|+.......
T Consensus       179 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~  249 (348)
T 3two_A          179 KVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLK  249 (348)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHH
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHH
Confidence            6889999999999999999999999999999999999988886432 344444447899999998774433

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.00  E-value=0.0016  Score=54.68  Aligned_cols=65  Identities=26%  Similarity=0.263  Sum_probs=48.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-------CCCccc--------CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------HGATVG--------GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-------~g~~~~--------~~~~~~~~~~dvii~~v   64 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|++++.+.+.+       .++...        .+..+++++.|+||-+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A   91 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeC
Confidence            57889987 999999999999999999999999877655432       122211        13345566889999876


Q ss_pred             C
Q 025163           65 A   65 (257)
Q Consensus        65 ~   65 (257)
                      .
T Consensus        92 ~   92 (342)
T 1y1p_A           92 S   92 (342)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.00  E-value=0.00039  Score=59.34  Aligned_cols=81  Identities=17%  Similarity=0.166  Sum_probs=52.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC-----C-eEEEEc-C-Cchh-HHH----HHH-CCCccc-CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNG-----F-KVTVWN-R-TLSK-CDE----LVA-HGATVG-GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g-----~-~V~~~~-r-~~~~-~~~----l~~-~g~~~~-~~~~~~~~~~dvii~~v   64 (257)
                      |||+|+| .|.+|..+.+.|.+++     + +|+.+. + +..+ +..    +.. ...... .+. +.++++|+||+|+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~-~~~~~~DvVf~al   88 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEA-AVLGGHDAVFLAL   88 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCH-HHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCH-HHhcCCCEEEECC
Confidence            4899999 8999999999999987     3 666664 2 2222 221    111 112221 233 3456899999999


Q ss_pred             CChHHHHH--HHHhcCCcEEe
Q 025163           65 ADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        65 ~~~~~~~~--~~~~~g~~~~~   83 (257)
                      |.....+.  .+ ..|...+|
T Consensus        89 g~~~s~~~~~~~-~~G~~vID  108 (352)
T 2nqt_A           89 PHGHSAVLAQQL-SPETLIID  108 (352)
T ss_dssp             TTSCCHHHHHHS-CTTSEEEE
T ss_pred             CCcchHHHHHHH-hCCCEEEE
Confidence            97654443  44 66777777

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.99  E-value=0.0056  Score=54.45  Aligned_cols=119  Identities=15%  Similarity=0.205  Sum_probs=83.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcC-CCchhhhccC------CcccCCCCCCC
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGG-IANPMFKGKG------PTMLQSNYAPA  196 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~-~~s~~~~~~~------~~~~~~~~~~~  196 (257)
                      +.++++|++.|.+.+..+.+++|.+.+.++      ++++...+.++++.++ ..|++++...      +.+.+--+.+.
T Consensus       325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~  404 (480)
T 2zyd_A          325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQIANLLLAPY  404 (480)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChHhhhcCHH
Confidence            788999999999999999999999999998      7899999999999875 3556654311      11111111111


Q ss_pred             c--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Q 025163          197 F--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  252 (257)
Q Consensus       197 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~  252 (257)
                      |  .+.......+.++..+.+.|+|+|.+.+....|.......    -...++...|+
T Consensus       405 f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~~~~~----~~~~l~qa~Rd  458 (480)
T 2zyd_A          405 FKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAV----LPANLIQAQRD  458 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCSS----CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccCC----chhhHHHHHHH
Confidence            2  2333344678899999999999999999988766543322    22345555554

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=96.97  E-value=0.00029  Score=59.78  Aligned_cols=84  Identities=12%  Similarity=0.093  Sum_probs=52.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCC---CeEEEEc-C-CchhHHHHHHCCCcccC-CHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNG---FKVTVWN-R-TLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g---~~V~~~~-r-~~~~~~~l~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|+| .|.+|..+.+.|.+++   ++++.+. + +..+.-.+....+.... ++ +..+++|+||+|+|.....+. 
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~-~~~~~vDvVf~a~g~~~s~~~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEE-FDWSQVHIALFSAGGELSAKWA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGG-CCGGGCSEEEECSCHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCCh-HHhcCCCEEEECCCchHHHHHH
Confidence            5899999 8999999999999884   3555554 2 22110001111111111 22 234689999999998766554 


Q ss_pred             -HHHhcCCcEEecc
Q 025163           73 -AITSKGGHFLEAP   85 (257)
Q Consensus        73 -~~~~~g~~~~~~p   85 (257)
                       .+...|...++.+
T Consensus        83 ~~~~~~G~~vId~s   96 (336)
T 2r00_A           83 PIAAEAGVVVIDNT   96 (336)
T ss_dssp             HHHHHTTCEEEECS
T ss_pred             HHHHHcCCEEEEcC
Confidence             4556788888744

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.97  E-value=0.006  Score=54.18  Aligned_cols=119  Identities=14%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCC
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPA  196 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~  196 (257)
                      +..+++|.++|.+.+..+.+++|.+.+.++      ++++...+..+++.|+. .|++++...      +.+.+--+.+.
T Consensus       317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~  396 (474)
T 2iz1_A          317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSELENLLLDDY  396 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTCCCGGGSHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence            788999999999999999999999999998      78999999999998753 556554211      11111111111


Q ss_pred             c--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Q 025163          197 F--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  252 (257)
Q Consensus       197 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~  252 (257)
                      |  .+...+...+.++..+.+.|+|+|.+.+....|......    .-...++...|+
T Consensus       397 ~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~~~~----~~~~~l~qa~rd  450 (474)
T 2iz1_A          397 FVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSYRSE----NLPANLIQAQRD  450 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCS----SCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----CchhhHHHHHHH
Confidence            2  233334567899999999999999999998865544222    222355555554

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.95  E-value=0.0016  Score=46.64  Aligned_cols=98  Identities=15%  Similarity=0.096  Sum_probs=68.0

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +|+|||+    +.+|..+.++|.+.||+|+.++...+.+     .|.+...|+.|+-. .|++++++|.....+.  .+.
T Consensus         6 siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p~~~v~~~v~e~~   79 (122)
T 3ff4_A            6 KTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYINPQNQLSEYNYIL   79 (122)
T ss_dssp             CEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSCHHHHGGGHHHHH
T ss_pred             EEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeCHHHHHHHHHHHH
Confidence            5999998    6799999999999999999888764433     37777778887767 9999999997655443  333


Q ss_pred             hcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeE
Q 025163           76 SKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~  124 (257)
                      ..|+..                 .++..|-.+  +++.++.+..|.+++
T Consensus        80 ~~g~k~-----------------v~~~~G~~~--~e~~~~a~~~Girvv  109 (122)
T 3ff4_A           80 SLKPKR-----------------VIFNPGTEN--EELEEILSENGIEPV  109 (122)
T ss_dssp             HHCCSE-----------------EEECTTCCC--HHHHHHHHHTTCEEE
T ss_pred             hcCCCE-----------------EEECCCCCh--HHHHHHHHHcCCeEE
Confidence            445432                 122222211  457777777776543

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=96.94  E-value=0.012  Score=52.14  Aligned_cols=120  Identities=13%  Similarity=0.148  Sum_probs=73.2

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCchh-HHHHHHCCCccc--CCHHHHhhcCceEEEc--cCChHHHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGM--LADPAAALSAI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvii~~--v~~~~~~~~~~   74 (257)
                      +||.|||.|..|.. +|+.|.+.|++|+++|.+... .+.+.+.|+.+.  .+. +.++++|+||+.  +|.....-...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~~~~~~a   97 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVSSAIKDDNPELVTS   97 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHHH
Confidence            47999999999997 999999999999999986543 456777787653  233 345688988875  33221111133


Q ss_pred             HhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCC
Q 025163           75 TSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKK  122 (257)
Q Consensus        75 ~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~  122 (257)
                      ...++.++.-+-.-.. .....+..-+.|.  ...+...+..+|+..|.+
T Consensus        98 ~~~~i~vl~~~~~l~~-~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~  146 (475)
T 1p3d_A           98 KQKRIPVIQRAQMLAE-IMRFRHGIAVAGTHGKTTTTAMISMIYTQAKLD  146 (475)
T ss_dssp             HHTTCCEEEHHHHHHH-HHHTSEEEEEESSSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHcCCcEEEHHHHHHH-HhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCC
Confidence            4456665553211000 0011122333332  345666788888888764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.0074  Score=53.89  Aligned_cols=119  Identities=13%  Similarity=0.188  Sum_probs=82.8

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCC
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK------SGLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPA  196 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~------~g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~  196 (257)
                      +..+++|+++|.+.+..+.+++|.+.++++      ++++...+.++++.++. .|++++...      +.+.+--+.+.
T Consensus       322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l~~l~~~~~  401 (497)
T 2p4q_A          322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDLENLLFNKF  401 (497)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTCSCGGGSHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCChhhhhcCHH
Confidence            478999999999999999999999999998      78999999999998754 566665311      11111111111


Q ss_pred             c--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Q 025163          197 F--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  252 (257)
Q Consensus       197 ~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~  252 (257)
                      |  .+.......+.++..+.+.|+|+|.+.+....|......    .-...++...|+
T Consensus       402 f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~~~~----~~~a~liqa~Rd  455 (497)
T 2p4q_A          402 FADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGYRSE----RLPANLLQAQRD  455 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTCS----SCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcccC----CchhHHHHHHHH
Confidence            2  233334467889999999999999999988865544222    222345555554

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.92  E-value=0.0016  Score=55.16  Aligned_cols=85  Identities=18%  Similarity=0.235  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEEE-cC--CchhHHHHHH---C-CC---------------------ccc--CCH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVW-NR--TLSKCDELVA---H-GA---------------------TVG--GSP   50 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~~-~r--~~~~~~~l~~---~-g~---------------------~~~--~~~   50 (257)
                      ||+|+|+|++|..+.+.|.++ +.+|... |+  +++....+.+   . |.                     .+.  .++
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp   84 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNP   84 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCG
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCCh
Confidence            899999999999999999986 4565544 42  4444444431   0 10                     111  156


Q ss_pred             HHH-h--hcCceEEEccCChHHHHH--HHHhcCC--cEEeccc
Q 025163           51 AEV-I--KKCTITIGMLADPAAALS--AITSKGG--HFLEAPV   86 (257)
Q Consensus        51 ~~~-~--~~~dvii~~v~~~~~~~~--~~~~~g~--~~~~~pv   86 (257)
                      +++ .  .++|+||.|+|.....+.  .....|.  .+++.|-
T Consensus        85 ~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~aGak~VVIs~pa  127 (337)
T 3e5r_O           85 DEIPWAEAGAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPS  127 (337)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             HHccccccCCCEEEECCCchhhHHHHHHHHHcCCCEEEEecCC
Confidence            654 1  479999999998766555  4556688  7888874

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=96.92  E-value=0.00083  Score=57.34  Aligned_cols=65  Identities=22%  Similarity=0.342  Sum_probs=49.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHH-CCCcc-----c---CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVA-HGATV-----G---GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~-~g~~~-----~---~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..++..|.+. |++|++.+|++++.+.+.. .++..     .   .++.++++++|+||-|..
T Consensus        25 ~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~  100 (372)
T 3slg_A           25 KKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVA  100 (372)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCc
Confidence            5799998 599999999999998 9999999999887766554 23221     1   123456678999997653

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=96.91  E-value=0.0019  Score=55.00  Aligned_cols=66  Identities=15%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH--HHHHHC-CCcc-----cCC---HHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAH-GATV-----GGS---PAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~--~~l~~~-g~~~-----~~~---~~~~~~~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..+++.|++.|++|++.+|++++.  +.+... ++..     .++   +.++++++|+||.+...
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            6 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            57899985 9999999999999999999999988765  445432 3221     112   44567889999977653

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.90  E-value=0.0037  Score=52.81  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=58.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHH----C--CCcc--c------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVA----H--GATV--G------   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~----~--g~~~--~------   47 (257)
                      ||.|||+|..|+.++.+|+..|. +++++|.+.                   .|++.+++    .  ++.+  .      
T Consensus        36 ~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~~~~i~~  115 (340)
T 3rui_A           36 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPM  115 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEEeccccc
Confidence            79999999999999999999996 799998754                   23443332    1  2211  1      


Q ss_pred             ---------------CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecc
Q 025163           48 ---------------GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAP   85 (257)
Q Consensus        48 ---------------~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~p   85 (257)
                                     .+..+.++++|+||.|+-+......   .....+..++++.
T Consensus       116 ~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tDn~~tR~lin~~c~~~~~plI~aa  171 (340)
T 3rui_A          116 IGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA  171 (340)
T ss_dssp             TTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSTGGGHHHHHHHHHTTCEEEEEE
T ss_pred             cCcccchhhhhcCCHHHHHhhhccCCEEEecCCCHHHHHHHHHHHHHcCCcEEEee
Confidence                           1234567899999999977654332   5556788887753

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.90  E-value=0.0026  Score=52.27  Aligned_cols=72  Identities=17%  Similarity=0.320  Sum_probs=56.4

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      ++.|||.|. +|.++|..|...|.+|+++++..              .++.+.++++|+||.+++.+..+....-..|..
T Consensus       163 ~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T--------------~~L~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  228 (286)
T 4a5o_A          163 DAVVVGASNIVGRPMALELLLGGCTVTVTHRFT--------------RDLADHVSRADLVVVAAGKPGLVKGEWIKEGAI  228 (286)
T ss_dssp             EEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC--------------SCHHHHHHTCSEEEECCCCTTCBCGGGSCTTCE
T ss_pred             EEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC--------------cCHHHHhccCCEEEECCCCCCCCCHHHcCCCeE
Confidence            689999876 89999999999999999997642              367788999999999998764433323355777


Q ss_pred             EEecccc
Q 025163           81 FLEAPVS   87 (257)
Q Consensus        81 ~~~~pv~   87 (257)
                      .+|..+.
T Consensus       229 VIDvgi~  235 (286)
T 4a5o_A          229 VIDVGIN  235 (286)
T ss_dssp             EEECCSC
T ss_pred             EEEeccc
Confidence            7776654

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.89  E-value=0.0056  Score=52.06  Aligned_cols=87  Identities=15%  Similarity=0.209  Sum_probs=59.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHH----HHHC--CCc-------ccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDE----LVAH--GAT-------VGG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~----l~~~--g~~-------~~~   48 (257)
                      +|.|||+|..|..++.+|+..|. +++++|.+.                   .|++.    +++.  ++.       ...
T Consensus        38 ~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~~~~~  117 (346)
T 1y8q_A           38 RVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEK  117 (346)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECSCGGG
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEecccCc
Confidence            79999999999999999999997 799996432                   13332    3332  221       112


Q ss_pred             CHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           49 SPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        49 ~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      ...+.+++.|+||.|+-+......   .....++.++++...|
T Consensus       118 ~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~G  160 (346)
T 1y8q_A          118 KPESFFTQFDAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFG  160 (346)
T ss_dssp             CCHHHHTTCSEEEEESCCHHHHHHHHHHHHHTTCEEEEEEEEB
T ss_pred             chHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEeecc
Confidence            345677899999999876654433   5556788888865444

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.89  E-value=0.026  Score=49.04  Aligned_cols=69  Identities=20%  Similarity=0.273  Sum_probs=49.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcC----------CchhHHHHHHCCCcc---cCCHHHHh-hcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAHGATV---GGSPAEVI-KKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r----------~~~~~~~l~~~g~~~---~~~~~~~~-~~~dvii~~v~   65 (257)
                      ++|.|.|.|++|...++.|.+.|..|+ +.|+          +.+.+.++.+..-.+   ..+.+++. -+||+++-|..
T Consensus       219 k~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DVliP~A~  298 (419)
T 3aoe_E          219 ARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEVLVLAAR  298 (419)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceEEEeccc
Confidence            478999999999999999999999977 7788          677777776541111   11233433 48999999876


Q ss_pred             ChHH
Q 025163           66 DPAA   69 (257)
Q Consensus        66 ~~~~   69 (257)
                      ....
T Consensus       299 ~n~i  302 (419)
T 3aoe_E          299 EGAL  302 (419)
T ss_dssp             TTCB
T ss_pred             cccc
Confidence            5433

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=96.88  E-value=0.00056  Score=58.15  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=50.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC---eEEEE-cCC-chhHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF---KVTVW-NRT-LSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~---~V~~~-~r~-~~~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+|+| .|.+|..+.+.|.+++|   ++..+ ++. ..+.-.+....+... .+++ .++++|+||+|+|.....+. 
T Consensus         7 ~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~~~~~~~-~~~~~DvV~~a~g~~~s~~~a   85 (340)
T 2hjs_A            7 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSF-DFSSVGLAFFAAAAEVSRAHA   85 (340)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGC-CGGGCSEEEECSCHHHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEEecCCHH-HhcCCCEEEEcCCcHHHHHHH
Confidence            5799999 79999999999997765   44544 432 211000111111111 1222 25689999999997765443 


Q ss_pred             -HHHhcCCcEEe
Q 025163           73 -AITSKGGHFLE   83 (257)
Q Consensus        73 -~~~~~g~~~~~   83 (257)
                       .+...|...++
T Consensus        86 ~~~~~aG~kvId   97 (340)
T 2hjs_A           86 ERARAAGCSVID   97 (340)
T ss_dssp             HHHHHTTCEEEE
T ss_pred             HHHHHCCCEEEE
Confidence             45566777776

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=96.88  E-value=0.00047  Score=59.05  Aligned_cols=84  Identities=13%  Similarity=0.157  Sum_probs=52.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC---eEEEEc-C-CchhHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF---KVTVWN-R-TLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~---~V~~~~-r-~~~~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+||| .|..|..|.+.|.+++|   ++..+. + +..+.-.+......+. .+. +..+++|+||+|+|.....+. 
T Consensus         3 ~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~~~~~-~~~~~~Dvvf~a~~~~~s~~~a   81 (366)
T 3pwk_A            3 YTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTE-TAFEGVDIALFSAGSSTSAKYA   81 (366)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEEECCT-TTTTTCSEEEECSCHHHHHHHH
T ss_pred             cEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEeeCCH-HHhcCCCEEEECCChHhHHHHH
Confidence            4899999 69999999999999876   344442 2 2111100110111111 122 235789999999997766554 


Q ss_pred             -HHHhcCCcEEecc
Q 025163           73 -AITSKGGHFLEAP   85 (257)
Q Consensus        73 -~~~~~g~~~~~~p   85 (257)
                       .+...|...+|.+
T Consensus        82 ~~~~~~G~~vIDlS   95 (366)
T 3pwk_A           82 PYAVKAGVVVVDNT   95 (366)
T ss_dssp             HHHHHTTCEEEECS
T ss_pred             HHHHHCCCEEEEcC
Confidence             5567788888844

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=96.84  E-value=0.0011  Score=56.96  Aligned_cols=65  Identities=12%  Similarity=0.108  Sum_probs=48.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|++++.......++..       ..++.++++++|+||-+..
T Consensus        30 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~  102 (379)
T 2c5a_A           30 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAA  102 (379)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchhhccCCceEEECCCCCHHHHHHHhCCCCEEEECce
Confidence            57999987 99999999999999999999999876543322223321       1134456778999998764

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.80  E-value=0.02  Score=50.51  Aligned_cols=118  Identities=18%  Similarity=0.183  Sum_probs=71.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHHHC-CCccc---CCHHHHhhcCceEEEccCChHHHHH---
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAH-GATVG---GSPAEVIKKCTITIGMLADPAAALS---   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~~~-g~~~~---~~~~~~~~~~dvii~~v~~~~~~~~---   72 (257)
                      ++|.|||.|.+|..-++.|.+.|.+|++++.+. +.++.+.+. ++...   .+. +.+.++|+||.++.++.....   
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~-~~l~~~~lVi~at~~~~~n~~i~~   91 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE-TLLDSCWLAIAATDDDTVNQRVSD   91 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCG-GGGTTCSEEEECCSCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCc-cccCCccEEEEcCCCHHHHHHHHH
Confidence            479999999999999999999999999998753 344555443 34321   223 234689999988776643222   


Q ss_pred             HHHhcCCcE--EeccccCC---ccccccCcEEEEe--cC-ChhhHHHHHHHHHHh
Q 025163           73 AITSKGGHF--LEAPVSGS---KQPAETGQLVILS--AG-EKALYDEAISALNVI  119 (257)
Q Consensus        73 ~~~~~g~~~--~~~pv~~~---~~~~~~~~~~~~~--~g-~~~~~~~~~~~l~~~  119 (257)
                      ..+..|+.+  ++.|-.+.   |.....+.+.+.+  +| ++.....+++.++..
T Consensus        92 ~a~~~~i~vn~~d~~e~~~~~~pa~~~~~~l~iaIsT~Gksp~la~~ir~~ie~~  146 (457)
T 1pjq_A           92 AAESRRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESL  146 (457)
T ss_dssp             HHHHTTCEEEETTCTTSSSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCEEEECCCcccCceEeeeEEEeCCeEEEEECCCCChHHHHHHHHHHHHh
Confidence            455567654  55553332   1222334444433  34 333345566666544

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=96.78  E-value=0.0064  Score=51.83  Aligned_cols=85  Identities=15%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHH----C--CCcc---------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVA----H--GATV---------   46 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~----~--g~~~---------   46 (257)
                      ||.|||+|..|..++.+|+..|. +++++|.+.                   .|++.+++    .  .+.+         
T Consensus       120 ~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~  199 (353)
T 3h5n_A          120 KVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNIND  199 (353)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEEECCCCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEeecccCc
Confidence            79999999999999999999996 799998763                   13332222    1  1111         


Q ss_pred             cCCHHHHhhcCceEEEccCChH-HHHH---HHHhcCCcEEecccc
Q 025163           47 GGSPAEVIKKCTITIGMLADPA-AALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        47 ~~~~~~~~~~~dvii~~v~~~~-~~~~---~~~~~g~~~~~~pv~   87 (257)
                      ..+..+ ++++|+||.|+-+.. ....   .....++.++.+.+.
T Consensus       200 ~~~~~~-~~~~DlVvd~~Dn~~~~r~~ln~~c~~~~~p~i~~~~~  243 (353)
T 3h5n_A          200 YTDLHK-VPEADIWVVSADHPFNLINWVNKYCVRANQPYINAGYV  243 (353)
T ss_dssp             GGGGGG-SCCCSEEEECCCCSTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hhhhhH-hccCCEEEEecCChHHHHHHHHHHHHHhCCCEEEEEEe
Confidence            111444 789999999986655 3222   556678888876544

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.77  E-value=0.0014  Score=56.00  Aligned_cols=81  Identities=17%  Similarity=0.259  Sum_probs=52.5

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCC-eEEEE-cCCc--hhHHHHH-----------HCCCccc-CCHHHHhhcCceEEEcc
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGF-KVTVW-NRTL--SKCDELV-----------AHGATVG-GSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~-~V~~~-~r~~--~~~~~l~-----------~~g~~~~-~~~~~~~~~~dvii~~v   64 (257)
                      ||+||| .|+.|..|.+.|.++.+ ++... +++.  .++....           .....+. .+.+ ..+++|++|+|+
T Consensus         9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~   87 (359)
T 4dpk_A            9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL   87 (359)
T ss_dssp             EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence            799999 69999999998887653 55544 3332  2233220           0012221 2333 347899999999


Q ss_pred             CChHHHHH--HHHhcCCcEEe
Q 025163           65 ADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        65 ~~~~~~~~--~~~~~g~~~~~   83 (257)
                      |.....+.  .+...|...+|
T Consensus        88 p~~~s~~~a~~~~~~G~~vID  108 (359)
T 4dpk_A           88 PQGAAGPVEEQFAKEGFPVIS  108 (359)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHCCCEEEE
Confidence            99877654  55667888887

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.77  E-value=0.0014  Score=56.00  Aligned_cols=81  Identities=17%  Similarity=0.259  Sum_probs=52.4

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCC-eEEEE-cCCc--hhHHHHH-----------HCCCccc-CCHHHHhhcCceEEEcc
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGF-KVTVW-NRTL--SKCDELV-----------AHGATVG-GSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~-~V~~~-~r~~--~~~~~l~-----------~~g~~~~-~~~~~~~~~~dvii~~v   64 (257)
                      ||+||| .|+.|..|.+.|.++.+ ++... +++.  .++....           .....+. .+.+ ..+++|++|+|+
T Consensus         9 kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~~~~-~~~~vDvvf~a~   87 (359)
T 4dpl_A            9 KAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPTDPK-LMDDVDIIFSPL   87 (359)
T ss_dssp             EEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEECCGG-GCTTCCEEEECC
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeCCHH-HhcCCCEEEECC
Confidence            799999 69999999998887653 55544 3332  2233220           0012221 2333 347899999999


Q ss_pred             CChHHHHH--HHHhcCCcEEe
Q 025163           65 ADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        65 ~~~~~~~~--~~~~~g~~~~~   83 (257)
                      |.....+.  .+...|...+|
T Consensus        88 p~~~s~~~a~~~~~~G~~vID  108 (359)
T 4dpl_A           88 PQGAAGPVEEQFAKEGFPVIS  108 (359)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEE
T ss_pred             ChHHHHHHHHHHHHCCCEEEE
Confidence            99877654  55667888887

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.76  E-value=0.00078  Score=61.20  Aligned_cols=69  Identities=23%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--C-CcccCCHHHH-hhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--G-ATVGGSPAEV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--g-~~~~~~~~~~-~~~~dvii~~v~~~~~   69 (257)
                      ++|.|+|.|.+|..+++.|.+.|++|++.|.|+++++++..-  | ..-...+.++ ++++|.++++++++..
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~  421 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDST  421 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchH
Confidence            478999999999999999999999999999999987655310  1 0011112222 4789999999998743

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=96.76  E-value=0.0032  Score=53.12  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch----hHHHHHH-------CCCcc-------cCCHHHHhhcCceEE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVA-------HGATV-------GGSPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~----~~~~l~~-------~g~~~-------~~~~~~~~~~~dvii   61 (257)
                      |+|.|.|+ |.+|..++..|.++|++|++.+|++.    .++.+..       .++..       ..++.++++++|+||
T Consensus        26 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi  105 (351)
T 3ruf_A           26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDHVL  105 (351)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCEEE
Confidence            58999985 99999999999999999999999654    3333433       23221       113445677899999


Q ss_pred             EccC
Q 025163           62 GMLA   65 (257)
Q Consensus        62 ~~v~   65 (257)
                      -|..
T Consensus       106 h~A~  109 (351)
T 3ruf_A          106 HQAA  109 (351)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8875

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=96.75  E-value=0.0019  Score=54.31  Aligned_cols=64  Identities=22%  Similarity=0.380  Sum_probs=48.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHC-CCc-----ccC---CHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GAT-----VGG---SPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~~-----~~~---~~~~~~~~~dvii~~v   64 (257)
                      |||.|.|+ |.+|..++..|.+. |++|++.+|++++.+.+... ++.     ..+   ...++++++|+||-|.
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A   75 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLV   75 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECB
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcc
Confidence            89999987 99999999999998 89999999998776544322 221     121   2345667899999874

>1vm6_A DHPR, dihydrodipicolinate reductase; TM1520, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD PG4; 2.27A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3

Probab=96.74  E-value=0.012  Score=46.66  Aligned_cols=64  Identities=14%  Similarity=0.147  Sum_probs=43.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhcCceEE-EccCChHHHHH-HHHh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI-GMLADPAAALS-AITS   76 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii-~~v~~~~~~~~-~~~~   76 (257)
                      ||..|+|+ |.||..+++...+.|+++. .+|++.+             .++    +++|++| ++.|....... ....
T Consensus        13 ~~~~v~Ga~GrMG~~i~~~~~~~~~elv~~id~~~~-------------~~l----~~~DVvIDFT~P~a~~~~~~~~~~   75 (228)
T 1vm6_A           13 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-------------EEL----DSPDVVIDFSSPEALPKTVDLCKK   75 (228)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-------------EEC----SCCSEEEECSCGGGHHHHHHHHHH
T ss_pred             ceeEEEEecCHHHHHHHHHHhCCCCEEEEEEcCCCc-------------ccc----cCCCEEEECCCHHHHHHHHHHHHH
Confidence            79999998 9999999987777788854 4576532             111    3689998 56665433222 4555


Q ss_pred             cCCcE
Q 025163           77 KGGHF   81 (257)
Q Consensus        77 ~g~~~   81 (257)
                      .|+..
T Consensus        76 ~g~~~   80 (228)
T 1vm6_A           76 YRAGL   80 (228)
T ss_dssp             HTCEE
T ss_pred             cCCCE
Confidence            66554

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=96.73  E-value=0.0013  Score=54.66  Aligned_cols=64  Identities=25%  Similarity=0.287  Sum_probs=45.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-C-----CHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-G-----SPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-~-----~~~~~~~~~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..++..|+++|++|++.+|+++........++... .     +..+++++ |+||-+..
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~-d~vih~A~   71 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRREFVNPSAELHVRDLKDYSWGAGIKG-DVVFHFAA   71 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGGGSCTTSEEECCCTTSTTTTTTCCC-SEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchhhcCCCceEEECccccHHHHhhcCC-CEEEECCC
Confidence            89999988 999999999999999999999998765443333232211 1     13344445 99887754

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=96.72  E-value=0.0024  Score=53.05  Aligned_cols=64  Identities=13%  Similarity=0.186  Sum_probs=38.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc--CceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|+++. .......+.-..+..+++++  +|+||-|..
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   69 (315)
T 2ydy_A            3 RRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-PKFEQVNLLDSNAVHHIIHDFQPHVIVHCAA   69 (315)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEC-------------------CHHHHHHHCCSEEEECC-
T ss_pred             CeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-CCeEEecCCCHHHHHHHHHhhCCCEEEECCc
Confidence            58999987 999999999999999999999987654 11111111112244556654  899998764

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=96.72  E-value=0.0015  Score=52.11  Aligned_cols=32  Identities=22%  Similarity=0.513  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|.|||+|.-|...|..|+++|++|+++++++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            49999999999999999999999999999864

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.72  E-value=0.021  Score=48.08  Aligned_cols=71  Identities=20%  Similarity=0.158  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh----cCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK----KCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~----~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+...     .+..+.+.    ..|++|.++......+.
T Consensus       169 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~~  248 (340)
T 3s2e_A          169 WVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQ  248 (340)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHHH
Confidence            5889999999999999999999999999999999999988886432     23333332    67999999987766555

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=96.71  E-value=0.0042  Score=56.37  Aligned_cols=66  Identities=11%  Similarity=0.098  Sum_probs=52.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc----cCCHHHH----hhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSPAEV----IKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~----~~~~~~~----~~~~dvii~~v~~~   67 (257)
                      ++|.|+|.|.+|..+++.|.+.|++|+++|.++++++.+.+. |...    .++.+.+    ++++|.+++ ++++
T Consensus       128 ~hviI~G~g~~g~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t~~D  202 (565)
T 4gx0_A          128 GHILIFGIDPITRTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-NLSD  202 (565)
T ss_dssp             SCEEEESCCHHHHHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-CSCH
T ss_pred             CeEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-eCCc
Confidence            368999999999999999999999999999999999999888 7543    1232221    367899987 4544

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.70  E-value=0.031  Score=48.76  Aligned_cols=66  Identities=18%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dvi   60 (257)
                      ++|+|.|.|++|...++.|.+.|..|+ +.|+          +.+.+.++++. |       .+.. +.++.. .+||++
T Consensus       236 ~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i-~~~ei~~~~~DIl  314 (440)
T 3aog_A          236 ARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPL-PAADFWGLPVEFL  314 (440)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEEC-CHHHHTTCCCSEE
T ss_pred             CEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEc-CchhhhcCCCcEE
Confidence            479999999999999999999999877 5676          55666666553 2       1111 445554 378999


Q ss_pred             EEccCCh
Q 025163           61 IGMLADP   67 (257)
Q Consensus        61 i~~v~~~   67 (257)
                      +-|....
T Consensus       315 vPcA~~n  321 (440)
T 3aog_A          315 VPAALEK  321 (440)
T ss_dssp             EECSSSS
T ss_pred             EecCCcC
Confidence            9886644

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=96.70  E-value=0.0027  Score=53.55  Aligned_cols=59  Identities=20%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|+++.      .++..       ..+..++++++|+||-+..
T Consensus        20 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   86 (347)
T 4id9_A           20 HMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGA   86 (347)
T ss_dssp             -CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS------SCCSEEESCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC------CCccEEecCcCCHHHHHHHHhCCCEEEECCc
Confidence            57999987 999999999999999999999998765      22221       1234466789999998753

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.68  E-value=0.0063  Score=55.17  Aligned_cols=84  Identities=19%  Similarity=0.183  Sum_probs=58.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHH----C--CCcc--c------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVA----H--GATV--G------   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~----~--g~~~--~------   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.                   .|++.+++    .  ++.+  .      
T Consensus       328 rVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm  407 (615)
T 4gsl_A          328 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPM  407 (615)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccc
Confidence            79999999999999999999996 799998864                   23433322    1  2211  1      


Q ss_pred             ---------------CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecc
Q 025163           48 ---------------GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAP   85 (257)
Q Consensus        48 ---------------~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~p   85 (257)
                                     .+..+.++++|+||.|+-+......   .....+..++++.
T Consensus       408 ~gh~v~~e~~~~l~~~~l~~ll~~~DlVvd~tDn~~tR~~ln~~c~~~~~PlI~aa  463 (615)
T 4gsl_A          408 IGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINAA  463 (615)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHCSEEEECCSSGGGTHHHHHHHHHTTCEEEEEE
T ss_pred             cCccccchhhhcCCHHHHHHHhhcCCEEEecCCCHHHHHHHHHHHHHcCCeEEEEE
Confidence                           1234567899999999977654332   5556788888753

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.62  E-value=0.0068  Score=51.39  Aligned_cols=71  Identities=15%  Similarity=0.047  Sum_probs=55.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh------cCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK------KCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~------~~dvii~~v~~~~~   69 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...     .+..+.+.      ..|++|-|+.....
T Consensus       170 ~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~  249 (348)
T 2d8a_A          170 SVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKA  249 (348)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHH
Confidence            68899999999999999999999 89999999999888887776422     13333221      58999999987555


Q ss_pred             HHH
Q 025163           70 ALS   72 (257)
Q Consensus        70 ~~~   72 (257)
                      ...
T Consensus       250 ~~~  252 (348)
T 2d8a_A          250 LEQ  252 (348)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=96.62  E-value=0.001  Score=56.50  Aligned_cols=84  Identities=13%  Similarity=0.230  Sum_probs=52.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC---eEEEEcCCchhHHH--HHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH-
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF---KVTVWNRTLSKCDE--LVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~--l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      |||+||| .|..|..|.+.|.++.|   ++..+.-..+.-+.  +......+. .+. +..+++|+||+|+|.....+. 
T Consensus         2 ~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~~~~~~~~~~~~~~-~~~~~~Dvvf~a~~~~~s~~~a   80 (344)
T 3tz6_A            2 LSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAET-ADPSGLDIALFSAGSAMSKVQA   80 (344)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEEETTEEEEEEETTT-SCCTTCSEEEECSCHHHHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCceeecCCceEEEeCCH-HHhccCCEEEECCChHHHHHHH
Confidence            6899999 69999999999999865   34544321111000  111111111 122 334789999999998766654 


Q ss_pred             -HHHhcCCcEEecc
Q 025163           73 -AITSKGGHFLEAP   85 (257)
Q Consensus        73 -~~~~~g~~~~~~p   85 (257)
                       .+...|...+|.+
T Consensus        81 ~~~~~~G~~vID~S   94 (344)
T 3tz6_A           81 PRFAAAGVTVIDNS   94 (344)
T ss_dssp             HHHHHTTCEEEECS
T ss_pred             HHHHhCCCEEEECC
Confidence             5567788888854

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=96.61  E-value=0.004  Score=53.55  Aligned_cols=67  Identities=18%  Similarity=0.197  Sum_probs=51.1

Q ss_pred             CeEEEEcCChhH-HHHHHHHHHCCCeEEEEcCCchhHHHHHHCC------------------Cccc----CCHHHHhhcC
Q 025163            1 MEVGFLGLGIMG-KAISMNLLRNGFKVTVWNRTLSKCDELVAHG------------------ATVG----GSPAEVIKKC   57 (257)
Q Consensus         1 mkI~iIG~G~mG-~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g------------------~~~~----~~~~~~~~~~   57 (257)
                      ||+-.+|+|++| ..++..|.+.|++|++.|++...++.|+++|                  ++..    ....+++.++
T Consensus         1 mkavhfGaGniGRGfig~~l~~~g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v~~v~ai~s~~~~~~~~i~~a   80 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQV   80 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHTTCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEEESCEEEETTSSHHHHHHTTC
T ss_pred             CcEEEECCCccchhhHHHHHHHcCCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEEEEEEEEeCcHHHHHHHHcCC
Confidence            899999999999 4556667789999999999999999998754                  1111    1233466789


Q ss_pred             ceEEEccCCh
Q 025163           58 TITIGMLADP   67 (257)
Q Consensus        58 dvii~~v~~~   67 (257)
                      |+|.+++...
T Consensus        81 dlitT~vG~~   90 (382)
T 3h2z_A           81 DLVTTAVGPV   90 (382)
T ss_dssp             SEEEECCCHH
T ss_pred             CEEEECCCcc
Confidence            9998888743

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=96.59  E-value=0.0045  Score=55.22  Aligned_cols=62  Identities=21%  Similarity=0.397  Sum_probs=48.3

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCCCeEEEEcCCchh-HHHHHHCCCccc--CCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVG--GSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvii~~   63 (257)
                      +||.|||.|..|.. +|+.|.+.|++|+++|.+... .+.|.+.|+.+.  .+. +.++++|+||+.
T Consensus        20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s   85 (491)
T 2f00_A           20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVS   85 (491)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEEC
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEEC
Confidence            47999999999997 999999999999999986543 356777787654  233 335678988875

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=96.58  E-value=0.0016  Score=58.39  Aligned_cols=62  Identities=16%  Similarity=0.288  Sum_probs=47.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||.|.| .|.+|..++..|.+.|++|++++|++++.+.+.   ........++++++|+||-|..
T Consensus       148 m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~---~d~~~~~~~~l~~~D~Vih~A~  210 (516)
T 3oh8_A          148 LTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRF---WDPLNPASDLLDGADVLVHLAG  210 (516)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEE---CCTTSCCTTTTTTCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCcccee---ecccchhHHhcCCCCEEEECCC
Confidence            7899998 599999999999999999999999877542211   1122334566788999998764

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.58  E-value=0.0076  Score=50.91  Aligned_cols=71  Identities=17%  Similarity=0.114  Sum_probs=56.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh----hcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI----KKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~----~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++.+++.|+...     .+..+.+    ...|++|-|+......+.
T Consensus       167 ~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~  246 (339)
T 1rjw_A          167 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQS  246 (339)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHHHHH
Confidence            6889999999999999999999999999999999998888886432     1222222    368999999987555444

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=96.58  E-value=0.0055  Score=51.79  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=47.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch----hHHHHHH-------CCCcc-----c--CCHHHHhhcCceEE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVA-------HGATV-----G--GSPAEVIKKCTITI   61 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~----~~~~l~~-------~g~~~-----~--~~~~~~~~~~dvii   61 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|++.    .++.+.+       .++..     .  .++.++++++|+||
T Consensus        28 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi  107 (352)
T 1sb8_A           28 KVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDYVL  107 (352)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCEEE
Confidence            57999987 99999999999999999999999753    3343321       23221     1  13445677899999


Q ss_pred             EccCC
Q 025163           62 GMLAD   66 (257)
Q Consensus        62 ~~v~~   66 (257)
                      -|...
T Consensus       108 h~A~~  112 (352)
T 1sb8_A          108 HQAAL  112 (352)
T ss_dssp             ECCSC
T ss_pred             ECCcc
Confidence            88753

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=96.58  E-value=0.002  Score=54.93  Aligned_cols=53  Identities=15%  Similarity=0.232  Sum_probs=41.4

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||.|.| .|.+|..++..|.+.|+ +|+..||+.+            ..++.++++++|+||-+..
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~~d------------~~~l~~~~~~~d~Vih~a~   55 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQTK------------EEELESALLKADFIVHLAG   55 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTTCC------------HHHHHHHHHHCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCCCC------------HHHHHHHhccCCEEEECCc
Confidence            8999998 69999999999999999 9999999411            1123445567888887753

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.58  E-value=0.0035  Score=53.16  Aligned_cols=65  Identities=20%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC-CC-eEEEEcCCchhHHHHHHC----CCcc-----c--CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN-GF-KVTVWNRTLSKCDELVAH----GATV-----G--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~-g~-~V~~~~r~~~~~~~l~~~----g~~~-----~--~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..+++.|++. |+ +|++++|++++.+.+.+.    ++..     .  .++.+++++.|+||-+..
T Consensus        22 k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~Aa  100 (344)
T 2gn4_A           22 QTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAA  100 (344)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEECCC
Confidence            4788887 599999999999999 97 999999998877665431    2221     1  123456678899998764

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.56  E-value=0.02  Score=48.86  Aligned_cols=66  Identities=20%  Similarity=0.111  Sum_probs=53.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++.+++.|+...     .+..+.+      ...|+||-|+...
T Consensus       192 ~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~~  268 (363)
T 3uog_A          192 RVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGGA  268 (363)
T ss_dssp             EEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTSS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCChH
Confidence            6889999999999999999999999999999999998888886432     2333322      1689999999854

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.55  E-value=0.0064  Score=51.43  Aligned_cols=84  Identities=15%  Similarity=0.240  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEE-EcC--CchhHHHHHHC----C----C---------------cc--cCCHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTV-WNR--TLSKCDELVAH----G----A---------------TV--GGSPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~-~~r--~~~~~~~l~~~----g----~---------------~~--~~~~~~   52 (257)
                      ||||+|+|++|..+.+.|.++ +.+|.. .|+  +++.+..+.+.    |    .               .+  ..++++
T Consensus         5 kVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~~   84 (335)
T 1u8f_O            5 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPSK   84 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHHH
Confidence            899999999999999999875 467554 464  56666555441    1    0               01  135666


Q ss_pred             H-h--hcCceEEEccCChHHHHH--HHHhcCCcEE--ecc
Q 025163           53 V-I--KKCTITIGMLADPAAALS--AITSKGGHFL--EAP   85 (257)
Q Consensus        53 ~-~--~~~dvii~~v~~~~~~~~--~~~~~g~~~~--~~p   85 (257)
                      + .  .++|+||.|+|.....+.  .....|...+  ++|
T Consensus        85 l~~~~~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           85 IKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             CCTTTTTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSC
T ss_pred             CccccCCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccC
Confidence            5 2  478999999998766554  3334565443  455

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.55  E-value=0.016  Score=49.63  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=55.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...       .+..+.+.     ..|+||-|+....
T Consensus       198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G~~~  277 (376)
T 1e3i_A          198 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ  277 (376)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCCCHH
Confidence            68899999999999999988998 79999999999998888886432       12333332     5899999998765


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       278 ~~~~  281 (376)
T 1e3i_A          278 TLKA  281 (376)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.55  E-value=0.0085  Score=51.41  Aligned_cols=71  Identities=17%  Similarity=0.208  Sum_probs=56.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++++.+++.|+...       .+..+.+.     ..|++|-|+..+.
T Consensus       196 ~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~  275 (378)
T 3uko_A          196 NVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVS  275 (378)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHH
Confidence            58899999999999999988898 79999999999998888887432       23333332     4899999999876


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       276 ~~~~  279 (378)
T 3uko_A          276 VMRA  279 (378)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6554

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=96.52  E-value=0.01  Score=50.25  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC---CeEEEE-cC-CchhHHHHHHC---------------------C--Ccc--cCCHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NR-TLSKCDELVAH---------------------G--ATV--GGSPA   51 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g---~~V~~~-~r-~~~~~~~l~~~---------------------g--~~~--~~~~~   51 (257)
                      ||+|+|+|++|..+.+.|.+++   ++|... ++ +++....+.+.                     |  +.+  ..+++
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   83 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPL   83 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSCGG
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeeecCceEEEEecCChH
Confidence            8999999999999999999873   565544 44 34443333221                     1  111  23555


Q ss_pred             HHh---hcCceEEEccCChHHHHH--HHHhcCCc--EEecccc
Q 025163           52 EVI---KKCTITIGMLADPAAALS--AITSKGGH--FLEAPVS   87 (257)
Q Consensus        52 ~~~---~~~dvii~~v~~~~~~~~--~~~~~g~~--~~~~pv~   87 (257)
                      ++-   .++|+||.|++.....+.  .....|..  .+++|-.
T Consensus        84 ~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~~  126 (339)
T 3b1j_A           84 NLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK  126 (339)
T ss_dssp             GSCTTTTTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             HCcccccCCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCCC
Confidence            542   278999999986654443  45566887  8887754

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.49  E-value=0.018  Score=49.24  Aligned_cols=71  Identities=17%  Similarity=0.215  Sum_probs=55.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...       .+..+.+.     ..|+||-|+....
T Consensus       194 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  273 (374)
T 2jhf_A          194 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD  273 (374)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCCCHH
Confidence            68899999999999999999998 79999999999998888886422       12333332     5899999998765


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       274 ~~~~  277 (374)
T 2jhf_A          274 TMVT  277 (374)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.48  E-value=0.014  Score=49.85  Aligned_cols=71  Identities=17%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...       .+..+.+.     ..|+||-|+....
T Consensus       194 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g~~~  273 (373)
T 1p0f_A          194 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE  273 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCHH
Confidence            68899999999999998888898 79999999999999888887432       12333332     5899999998765


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       274 ~~~~  277 (373)
T 1p0f_A          274 TMMN  277 (373)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.47  E-value=0.018  Score=51.15  Aligned_cols=104  Identities=14%  Similarity=0.213  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcCC-CchhhhccC------CcccCCCCCCCc-
Q 025163          132 GAKMKLVVNMIMGCMMNTFSEGLVLAEKS------GLDPRTLLDVLDLGGI-ANPMFKGKG------PTMLQSNYAPAF-  197 (257)
Q Consensus       132 a~~~kl~~n~~~~~~~~~~~E~~~l~~~~------g~~~~~~~~~~~~~~~-~s~~~~~~~------~~~~~~~~~~~~-  197 (257)
                      .+++|.++|.+.+..+.+++|.+.+.++.      +++...+..+++.|+. .|++++...      +.+.+--+.+.| 
T Consensus       316 ~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l~~l~~~~~~~  395 (482)
T 2pgd_A          316 KSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGLQNLLLDDFFK  395 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTCSCGGGSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCChhhhhcCHHHH
Confidence            79999999999999999999999999883      7999999999998753 556654311      111111111212 


Q ss_pred             -ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q 025163          198 -PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARS  235 (257)
Q Consensus       198 -~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~  235 (257)
                       .+...+...+.++..+.+.|+|+|.+.+....|....+
T Consensus       396 ~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~~  434 (482)
T 2pgd_A          396 SAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRH  434 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhccc
Confidence             23334566899999999999999999999985555433

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=96.47  E-value=0.003  Score=53.21  Aligned_cols=82  Identities=12%  Similarity=0.071  Sum_probs=51.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-------CCe-EEEEcCCchhH------HH----HHHCC-Cc-ccCCHHHHhh--cCce
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-------GFK-VTVWNRTLSKC------DE----LVAHG-AT-VGGSPAEVIK--KCTI   59 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-------g~~-V~~~~r~~~~~------~~----l~~~g-~~-~~~~~~~~~~--~~dv   59 (257)
                      ||+|||+|.||..+++.|.++       +.+ |.++|++++..      ++    ..+.| +. ...+..+.++  +.|+
T Consensus         6 rVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iDv   85 (325)
T 3ing_A            6 RIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAADL   85 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCSE
T ss_pred             EEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCCE
Confidence            699999999999999999874       234 34457776421      11    22223 21 1116666664  5899


Q ss_pred             EEEccCChHH----HHH--HHHhcCCcEEe
Q 025163           60 TIGMLADPAA----ALS--AITSKGGHFLE   83 (257)
Q Consensus        60 ii~~v~~~~~----~~~--~~~~~g~~~~~   83 (257)
                      |+.|+|+...    .+.  ..-..|.+.+.
T Consensus        86 VVe~T~~~~~~~pa~~~~~~aL~aGkhVVt  115 (325)
T 3ing_A           86 LVDCTPASRDGVREYSLYRMAFESGMNVVT  115 (325)
T ss_dssp             EEECCCCCSSSHHHHHHHHHHHHTTCEEEE
T ss_pred             EEECCCCccccchHHHHHHHHHHCCCeEEE
Confidence            9999997422    111  44567777765

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.46  E-value=0.0037  Score=49.61  Aligned_cols=42  Identities=17%  Similarity=0.116  Sum_probs=34.2

Q ss_pred             CeEE-EEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            1 MEVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         1 mkI~-iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      ||+. |.| .|.+|.++++.|++.|++|++.+|++++++++.+.
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~   44 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNC   44 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            7744 444 58999999999999999999999999988877654

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=96.43  E-value=0.0049  Score=52.80  Aligned_cols=64  Identities=14%  Similarity=0.223  Sum_probs=44.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC-----eEEEEcCCchh--------HHHHHHC------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF-----KVTVWNRTLSK--------CDELVAH------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~-----~V~~~~r~~~~--------~~~l~~~------g~~~~~~~~~~~~~~dvi   60 (257)
                      +||+||| +|.+|.+++..|+..+.     +|.+++.+.++        ..+|..-      .+...++..+.++++|+|
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~~daDvV  112 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA  112 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHhCCCCEE
Confidence            4899999 79999999999998764     27776544332        2233321      123455677888999999


Q ss_pred             EEcc
Q 025163           61 IGML   64 (257)
Q Consensus        61 i~~v   64 (257)
                      |++-
T Consensus       113 Vita  116 (375)
T 7mdh_A          113 LLIG  116 (375)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9975

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.43  E-value=0.0093  Score=50.66  Aligned_cols=81  Identities=21%  Similarity=0.293  Sum_probs=54.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCch---hHHH----HHHCCCccc-CCHHHHhhcCceEEEccCChHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLS---KCDE----LVAHGATVG-GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~---~~~~----l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      ||+|||+ |..|..|.+.|.++.. ++....-..+   ++.+    +. ....+. .++++..+++|++|+|+|.....+
T Consensus        15 ~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~~s~~   93 (351)
T 1vkn_A           15 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAGASYD   93 (351)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTTHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcHHHHH
Confidence            7999975 9999999999998864 5655532221   2222    21 222222 245565578999999999987766


Q ss_pred             H--HHHhcCCcEEecc
Q 025163           72 S--AITSKGGHFLEAP   85 (257)
Q Consensus        72 ~--~~~~~g~~~~~~p   85 (257)
                      .  .+  .|..++|..
T Consensus        94 ~~~~~--~g~~VIDlS  107 (351)
T 1vkn_A           94 LVREL--KGVKIIDLG  107 (351)
T ss_dssp             HHTTC--CSCEEEESS
T ss_pred             HHHHh--CCCEEEECC
Confidence            5  22  688888855

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.42  E-value=0.048  Score=47.41  Aligned_cols=68  Identities=18%  Similarity=0.143  Sum_probs=41.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEE-EEcCCc---------------hhHHHHHHC-C-------CcccCCHHHHh-h
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTL---------------SKCDELVAH-G-------ATVGGSPAEVI-K   55 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~-~~~r~~---------------~~~~~l~~~-g-------~~~~~~~~~~~-~   55 (257)
                      ++|+|.|.|++|...++.|.+.|..|+ +.|.++               +.+.++.+. |       .+.. +.++.. .
T Consensus       213 ~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i-~~~~~~~~  291 (421)
T 2yfq_A          213 AKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERI-TDEEFWTK  291 (421)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------------
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEe-CccchhcC
Confidence            479999999999999999999999877 567773               455555442 2       1111 222332 3


Q ss_pred             cCceEEEccCChHH
Q 025163           56 KCTITIGMLADPAA   69 (257)
Q Consensus        56 ~~dvii~~v~~~~~   69 (257)
                      +||+++-|......
T Consensus       292 ~~DIliP~A~~n~i  305 (421)
T 2yfq_A          292 EYDIIVPAALENVI  305 (421)
T ss_dssp             ---CEEECSCSSCS
T ss_pred             CccEEEEcCCcCcC
Confidence            78888888765433

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=96.42  E-value=0.2  Score=40.94  Aligned_cols=84  Identities=14%  Similarity=0.117  Sum_probs=54.3

Q ss_pred             CCcccCCHHHHhhcCceEEEccCChH-HHHH---------------------------HHHh---cCCcEEeccccCCcc
Q 025163           43 GATVGGSPAEVIKKCTITIGMLADPA-AALS---------------------------AITS---KGGHFLEAPVSGSKQ   91 (257)
Q Consensus        43 g~~~~~~~~~~~~~~dvii~~v~~~~-~~~~---------------------------~~~~---~g~~~~~~pv~~~~~   91 (257)
                      |+++++|..|+++++|++|+-+|... ..+.                           .+..   +.+.+.+.+-.+-|.
T Consensus       128 GVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPaaVPg  207 (358)
T 2b0j_A          128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPE  207 (358)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTT
T ss_pred             CcEeecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCCCCCC
Confidence            67889999999999999999999876 2222                           2222   234444422111122


Q ss_pred             ccccCcEEEEec-CChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           92 PAETGQLVILSA-GEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        92 ~~~~~~~~~~~~-g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      .  .|+...--+ .+++..+++.++.+..++..|.+..
T Consensus       208 t--~Gq~~~g~~yAtEEqIeklveLaksa~k~ay~vPA  243 (358)
T 2b0j_A          208 M--KGQVYIAEGYASEEAVNKLYEIGKIARGKAFKMPA  243 (358)
T ss_dssp             T--CCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEEEH
T ss_pred             C--CCccccccccCCHHHHHHHHHHHHHhCCCeEecch
Confidence            2  344222222 3788899999999999998876643

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=96.39  E-value=0.0051  Score=52.69  Aligned_cols=85  Identities=14%  Similarity=0.248  Sum_probs=54.1

Q ss_pred             CeEEEEcC-ChhHHHHHH-HHHHCCC---eEEEE-cCCch-hHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLS-KCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~-~L~~~g~---~V~~~-~r~~~-~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|||+ |..|..|.+ .|.++.+   ++..+ .++.. ++.++......+.  .+++ ..+++|++|+|+|.....+
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~~~~~~~-~~~~~Dvvf~a~~~~~s~~   79 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIE-SLKQLDAVITCQGGSYTEK   79 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCEETTCHH-HHTTCSEEEECSCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEEecCChh-HhccCCEEEECCChHHHHH
Confidence            89999996 999999999 7777763   55554 33311 1111221112222  2333 3579999999999876655


Q ss_pred             H--HHHhcCC--cEEeccc
Q 025163           72 S--AITSKGG--HFLEAPV   86 (257)
Q Consensus        72 ~--~~~~~g~--~~~~~pv   86 (257)
                      .  .+...|.  .++|.+-
T Consensus        80 ~~~~~~~~G~k~~VID~ss   98 (370)
T 3pzr_A           80 VYPALRQAGWKGYWIDAAS   98 (370)
T ss_dssp             HHHHHHHTTCCCEEEECSS
T ss_pred             HHHHHHHCCCCEEEEeCCc
Confidence            4  4556675  7888774

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=96.39  E-value=0.0027  Score=53.33  Aligned_cols=65  Identities=22%  Similarity=0.272  Sum_probs=45.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH--CCCc-----cc--CCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGAT-----VG--GSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~--~g~~-----~~--~~~~~~~~--~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|+++....+.+  .++.     +.  .++.++++  ++|+||-+..
T Consensus        21 ~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   97 (330)
T 2pzm_A           21 MRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSAA   97 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECCc
Confidence            68999987 999999999999999999999997543221111  1221     11  12445666  8999998864

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=96.39  E-value=0.0035  Score=53.71  Aligned_cols=85  Identities=15%  Similarity=0.262  Sum_probs=53.2

Q ss_pred             CeEEEEc-CChhHHHHHH-HHHHCCC---eEEEEcC-Cchh-HHHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLG-LGIMGKAISM-NLLRNGF---KVTVWNR-TLSK-CDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~-~L~~~g~---~V~~~~r-~~~~-~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|+| .|.+|..+.+ .|.++++   ++..+.. +..+ +..+....+.+.  .++++ ++++|+||.|+|.....+
T Consensus         2 ~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~~~~~~~~-~~~~DvVf~a~g~~~s~~   80 (367)
T 1t4b_A            2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEA-LKALDIIVTCQGGDYTNE   80 (367)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHH-HHTCSEEEECSCHHHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccCCCceEEEecCChHH-hcCCCEEEECCCchhHHH
Confidence            4899999 8999999999 5555554   3444433 2111 111211222222  23444 478999999999776655


Q ss_pred             H--HHHhcCC--cEEeccc
Q 025163           72 S--AITSKGG--HFLEAPV   86 (257)
Q Consensus        72 ~--~~~~~g~--~~~~~pv   86 (257)
                      .  .+...|.  .++|.+-
T Consensus        81 ~a~~~~~~G~k~vVID~ss   99 (367)
T 1t4b_A           81 IYPKLRESGWQGYWIDAAS   99 (367)
T ss_dssp             HHHHHHHTTCCCEEEECSS
T ss_pred             HHHHHHHCCCCEEEEcCCh
Confidence            4  5556776  7888764

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.38  E-value=0.0053  Score=52.20  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=55.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEEEEc--C-CchhHHHHHH-C---C-------------------Cccc--CCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWN--R-TLSKCDELVA-H---G-------------------ATVG--GSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~~~~--r-~~~~~~~l~~-~---g-------------------~~~~--~~~~   51 (257)
                      +||+|+|+|++|..+.+.|.++ ..+|+..+  + +.+....+.+ .   |                   +.+.  .+++
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999999987 56766554  2 2222223211 1   0                   1111  2555


Q ss_pred             HHh---hcCceEEEccCChHHHHH--HHHhcCC--cEEeccc
Q 025163           52 EVI---KKCTITIGMLADPAAALS--AITSKGG--HFLEAPV   86 (257)
Q Consensus        52 ~~~---~~~dvii~~v~~~~~~~~--~~~~~g~--~~~~~pv   86 (257)
                      ++-   .++|+||.|+|.....+.  .....|.  .++++|-
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s~e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTTEEKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhhHHHHHHHHHcCCcEEEEeCCC
Confidence            532   479999999997655544  3445677  7888774

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.37  E-value=0.024  Score=48.51  Aligned_cols=71  Identities=17%  Similarity=0.231  Sum_probs=55.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...       .+..+.+.     ..|++|-|+....
T Consensus       195 ~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  274 (374)
T 1cdo_A          195 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG  274 (374)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHH
Confidence            58899999999999999998998 79999999999998888886422       12333332     5899999998765


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       275 ~~~~  278 (374)
T 1cdo_A          275 VMRN  278 (374)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=96.37  E-value=0.0095  Score=50.39  Aligned_cols=71  Identities=14%  Similarity=0.106  Sum_probs=55.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCcccCCHHH------Hhh---cCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATVGGSPAE------VIK---KCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~------~~~---~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+...  |.+|++.++++++.+.+++.|+...-+..+      .+.   ..|+||-|+......
T Consensus       173 ~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~  252 (344)
T 2h6e_A          173 VVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTEETT  252 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCChHHH
Confidence            688999999999999988888  999999999999998888888754333221      122   589999999877454


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      ..
T Consensus       253 ~~  254 (344)
T 2h6e_A          253 YN  254 (344)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.36  E-value=0.014  Score=49.16  Aligned_cols=87  Identities=15%  Similarity=0.181  Sum_probs=57.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC---CCeEEEE-cC-CchhHHHHHHC----C-------------------Ccc--cCCH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN---GFKVTVW-NR-TLSKCDELVAH----G-------------------ATV--GGSP   50 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~---g~~V~~~-~r-~~~~~~~l~~~----g-------------------~~~--~~~~   50 (257)
                      +||+|+|.|++|..+.+.|.++   ..+|+.. ++ +++....+.+.    |                   +.+  ..++
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   80 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence            5899999999999999999886   3676654 44 33333333210    1                   112  2255


Q ss_pred             HHH-hh--cCceEEEccCChHHHHH--HHHhcCC--cEEecccc
Q 025163           51 AEV-IK--KCTITIGMLADPAAALS--AITSKGG--HFLEAPVS   87 (257)
Q Consensus        51 ~~~-~~--~~dvii~~v~~~~~~~~--~~~~~g~--~~~~~pv~   87 (257)
                      +++ .+  ++|+||.|+|.....+.  .+...|.  .++++|-.
T Consensus        81 ~~l~w~~~~vDvV~~atg~~~s~e~a~~~l~aGakkvVId~~a~  124 (332)
T 1hdg_O           81 SKLPWKDLGVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK  124 (332)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             HHCcccccCCCEEEECCccchhHHHHHHHHHcCCcEEEEeCCCC
Confidence            554 23  79999999997655544  5556788  88887743

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.35  E-value=0.0092  Score=54.03  Aligned_cols=83  Identities=19%  Similarity=0.184  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHHHH----C--CCcc--c------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDELVA----H--GATV--G------   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l~~----~--g~~~--~------   47 (257)
                      ||.|||+|..|+.++.+|+..|. +++++|.+.                   .|++.+++    .  ++.+  .      
T Consensus       329 kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~~~~I~~  408 (598)
T 3vh1_A          329 KVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPM  408 (598)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEECCCCCC
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEEeccccc
Confidence            79999999999999999999996 799996541                   24433332    1  2211  0      


Q ss_pred             ---------------CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEec
Q 025163           48 ---------------GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEA   84 (257)
Q Consensus        48 ---------------~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~   84 (257)
                                     .+..+.++++|+||.|+.+......   .....+..++++
T Consensus       409 pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatDn~~tR~lin~~c~~~~~plI~a  463 (598)
T 3vh1_A          409 IGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVDSRESRWLPSLLSNIENKTVINA  463 (598)
T ss_dssp             SSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCSBGGGTHHHHHHHHHTTCEEEEE
T ss_pred             cCcccccccccccCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHhcCCCEEEE
Confidence                           1224567889999999987765332   445567777765

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=96.35  E-value=0.0053  Score=51.50  Aligned_cols=65  Identities=18%  Similarity=0.295  Sum_probs=45.5

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH----H---CCCcc-------cCCHHHHhh--cCceEEEc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV----A---HGATV-------GGSPAEVIK--KCTITIGM   63 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~----~---~g~~~-------~~~~~~~~~--~~dvii~~   63 (257)
                      |+|.|.| .|.+|..++..|++.|++|++.+|+++..+...    +   .++..       ..++.++++  +.|+||-+
T Consensus         6 ~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   85 (341)
T 3enk_A            6 GTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAIHF   85 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             cEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEEEC
Confidence            5788887 599999999999999999999999766543322    1   12221       112344555  78999987


Q ss_pred             cC
Q 025163           64 LA   65 (257)
Q Consensus        64 v~   65 (257)
                      ..
T Consensus        86 A~   87 (341)
T 3enk_A           86 AA   87 (341)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=96.34  E-value=0.0063  Score=51.53  Aligned_cols=85  Identities=14%  Similarity=0.188  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHH---C-CCeEEEE-cC-CchhHHHHHHC---------------------C--Ccc--cCCH
Q 025163            2 EVGFLGLGIMGKAISMNLLR---N-GFKVTVW-NR-TLSKCDELVAH---------------------G--ATV--GGSP   50 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~---~-g~~V~~~-~r-~~~~~~~l~~~---------------------g--~~~--~~~~   50 (257)
                      ||+|+|.|++|..+.+.|.+   + ..+|... ++ +++....+.+.                     |  +.+  ..++
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp   83 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSL   83 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSG
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEECCEEEEEEecCCh
Confidence            89999999999999999998   5 4565544 43 34444444320                     1  111  1345


Q ss_pred             HHH-hh--cCceEEEccCChHHHHH--HHHhcCCc--EEeccc
Q 025163           51 AEV-IK--KCTITIGMLADPAAALS--AITSKGGH--FLEAPV   86 (257)
Q Consensus        51 ~~~-~~--~~dvii~~v~~~~~~~~--~~~~~g~~--~~~~pv   86 (257)
                      ++. .+  ++|+||.|+|.....+.  .....|..  .+++|-
T Consensus        84 ~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           84 QSLPWRELGVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             GGCCHHHHTCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             HHCcccccCCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            543 22  79999999997655444  44556776  788775

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=96.34  E-value=0.0091  Score=50.06  Aligned_cols=64  Identities=28%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHH---HHHHC-----CC-------cccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD---ELVAH-----GA-------TVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~---~l~~~-----g~-------~~~~~~~~~~~~~dvii~~v   64 (257)
                      ++|.|.| +|.+|..++..|++.|++|++..|+++..+   .+.+.     ++       .-..++.++++++|+||-+.
T Consensus         6 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A   85 (337)
T 2c29_D            6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFHVA   85 (337)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEECC
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEEec
Confidence            3677887 799999999999999999999889876432   22111     11       11234567778899998754

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=96.32  E-value=0.0072  Score=50.67  Aligned_cols=64  Identities=19%  Similarity=0.234  Sum_probs=45.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhH---H---HHHH-CCCcc-------cCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKC---D---ELVA-HGATV-------GGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~---~---~l~~-~g~~~-------~~~~~~~~~~~dvii~~v   64 (257)
                      |+|.|.| +|.+|..++..|++.||+|++..|++++.   .   .+.. .++..       ..++.++++++|+||-+.
T Consensus        10 ~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A   88 (338)
T 2rh8_A           10 KTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHVA   88 (338)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEES
T ss_pred             CEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEeC
Confidence            4788998 69999999999999999999988876532   1   2221 12211       234566778899999754

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.30  E-value=0.11  Score=45.05  Aligned_cols=68  Identities=18%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~-~g~~V~-~~~r----------~~~~~~~l~~~-g-------~~~~~~~~~~~-~~~dv   59 (257)
                      ++|+|.|.|++|...++.|.+ .|..|+ +.|.          +++.+.++++. |       .+.. ++++.. .++|+
T Consensus       210 ~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~-~~~eil~~~~DI  288 (415)
T 2tmg_A          210 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI  288 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEE-CHHHHTTCSCSE
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEc-CchhhhcCCCcE
Confidence            479999999999999999999 998876 5566          56667666654 2       1222 455554 48999


Q ss_pred             EEEccCChHH
Q 025163           60 TIGMLADPAA   69 (257)
Q Consensus        60 ii~~v~~~~~   69 (257)
                      ++-|......
T Consensus       289 liP~A~~n~i  298 (415)
T 2tmg_A          289 LVPAALEGAI  298 (415)
T ss_dssp             EEECSSTTSB
T ss_pred             EEecCCcCcc
Confidence            9998765433

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=96.28  E-value=0.021  Score=50.03  Aligned_cols=69  Identities=20%  Similarity=0.235  Sum_probs=47.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc-------------------hhHHHH----HHC--CCcc-------cC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL-------------------SKCDEL----VAH--GATV-------GG   48 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~-------------------~~~~~l----~~~--g~~~-------~~   48 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.                   .|++.+    ++.  ++++       ..
T Consensus        42 ~VlvvG~GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~  121 (434)
T 1tt5_B           42 KVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQD  121 (434)
T ss_dssp             CEEEECSSTHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGG
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccch
Confidence            79999999999999999999996 699996432                   133322    221  2211       11


Q ss_pred             CHHHHhhcCceEEEccCChHHH
Q 025163           49 SPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus        49 ~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ...+.+++.|+||.|+-+....
T Consensus       122 ~~~~~~~~~DlVi~~~Dn~~~R  143 (434)
T 1tt5_B          122 FNDTFYRQFHIIVCGLDSIIAR  143 (434)
T ss_dssp             BCHHHHTTCSEEEECCSCHHHH
T ss_pred             hhHHHhcCCCEEEECCCCHHHH
Confidence            1246778999999998776543

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=96.28  E-value=0.0059  Score=51.15  Aligned_cols=65  Identities=18%  Similarity=0.145  Sum_probs=45.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH--HHHHHC----CCcc-c---CC---HHHHhhc--CceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC--DELVAH----GATV-G---GS---PAEVIKK--CTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~--~~l~~~----g~~~-~---~~---~~~~~~~--~dvii~~v   64 (257)
                      |+|.|.|+ |.+|..++..|++.|++|++.+|++++.  +.+.+.    ++.. .   .+   ..+++++  .|+||-+.
T Consensus         4 ~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   83 (345)
T 2z1m_A            4 KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYNLA   83 (345)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEECC
Confidence            57899987 9999999999999999999999987653  233322    2211 1   12   3344554  59999886


Q ss_pred             C
Q 025163           65 A   65 (257)
Q Consensus        65 ~   65 (257)
                      .
T Consensus        84 ~   84 (345)
T 2z1m_A           84 A   84 (345)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A

Probab=96.27  E-value=0.026  Score=51.66  Aligned_cols=86  Identities=17%  Similarity=0.245  Sum_probs=56.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHH----HHHC--CCcc-------c-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDE----LVAH--GATV-------G-   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~----l~~~--g~~~-------~-   47 (257)
                      ||.|||+|.+|+.++.+|+..|. +++++|.+.=                   |++.    +++.  ++.+       . 
T Consensus        19 ~VlVVGaGGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVGk~KAeaaa~~L~~iNP~v~V~a~~~~i~~   98 (640)
T 1y8q_B           19 RVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDSIMN   98 (640)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHTTCTTCEEEEEESCTTS
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcChHHHHHHHHHHHHHCCCCeEEEEecccch
Confidence            79999999999999999999996 7999986531                   2222    2222  1211       1 


Q ss_pred             CC-HHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           48 GS-PAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        48 ~~-~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                      .+ ..+..++.|+||.|+-+......   .....++.++++.+.
T Consensus        99 ~~~~~~~~~~~DlVvda~Dn~~aR~~ln~~c~~~~iPlI~~g~~  142 (640)
T 1y8q_B           99 PDYNVEFFRQFILVMNALDNRAARNHVNRMCLAADVPLIESGTA  142 (640)
T ss_dssp             TTSCHHHHTTCSEEEECCSCHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred             hhhhHhhhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEe
Confidence            11 24667899999999877654332   444567777765433

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=96.25  E-value=0.0048  Score=52.24  Aligned_cols=65  Identities=25%  Similarity=0.228  Sum_probs=46.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----CCCcc-----c--CCHHHHhhc--CceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGATV-----G--GSPAEVIKK--CTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----~g~~~-----~--~~~~~~~~~--~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..++..|.+.|++|++++|++++.+.+.+     .++..     .  .+..+++++  .|+||-+..
T Consensus        10 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~   89 (357)
T 1rkx_A           10 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAA   89 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEECCC
Confidence            5789998 5999999999999999999999998765443322     12221     1  123345554  799998865

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=96.24  E-value=0.026  Score=47.62  Aligned_cols=71  Identities=14%  Similarity=0.103  Sum_probs=55.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHHCCCcccC----CHHHHh------hcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGG----SPAEVI------KKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~~g~~~~~----~~~~~~------~~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+... |.+|++.++++++.+.+++.|+...-    +..+.+      ...|++|-|+......
T Consensus       174 ~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~~~~  253 (345)
T 3jv7_A          174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQSTI  253 (345)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCHHHH
Confidence            578999999999998888776 78999999999999999988865321    222222      2689999999987555


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      ..
T Consensus       254 ~~  255 (345)
T 3jv7_A          254 DT  255 (345)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=96.24  E-value=0.0029  Score=52.06  Aligned_cols=60  Identities=15%  Similarity=0.155  Sum_probs=43.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhc--CceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~--~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..+++.|. .|++|++.+|+++.+    ...+.-..++.+++++  +|+||-+..
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~----~~D~~d~~~~~~~~~~~~~d~vih~a~   63 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSKEF----CGDFSNPKGVAETVRKLRPDVIVNAAA   63 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCSSS----CCCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccccc----cccCCCHHHHHHHHHhcCCCEEEECcc
Confidence            89999987 999999999999 899999999976311    0011111133455555  899998764

>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans}

Probab=96.23  E-value=0.0086  Score=51.49  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=51.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCC-eEE-EE-cC-Cch-hHHHHHH-----------CCCccc-CCHHHHhhcCceEEEc
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGF-KVT-VW-NR-TLS-KCDELVA-----------HGATVG-GSPAEVIKKCTITIGM   63 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~-~V~-~~-~r-~~~-~~~~l~~-----------~g~~~~-~~~~~~~~~~dvii~~   63 (257)
                      ||+||| .|..|..|.+.|.++.+ ++. ++ ++ +.. ++.+...           ....+. .+..+..+++|++|+|
T Consensus        21 kVaIvGAtG~vG~ell~lL~~hp~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~~~~~~~~~~~Dvvf~a  100 (381)
T 3hsk_A           21 KAGVLGATGSVGQRFILLLSKHPEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSG  100 (381)
T ss_dssp             EEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEESSSCTTGGGCSEEEEC
T ss_pred             EEEEECCCChHHHHHHHHHHcCCCceEEEeeccccccCCCHHHhcccccccccccccccceEEeCchhhhcccCCEEEEC
Confidence            799999 59999999999988763 564 33 23 221 2222110           011221 1222145789999999


Q ss_pred             cCChHHHHH--HHHhcCCcEEe
Q 025163           64 LADPAAALS--AITSKGGHFLE   83 (257)
Q Consensus        64 v~~~~~~~~--~~~~~g~~~~~   83 (257)
                      +|.....+.  .+...|...+|
T Consensus       101 lp~~~s~~~~~~~~~~G~~VID  122 (381)
T 3hsk_A          101 LDADVAGDIEKSFVEAGLAVVS  122 (381)
T ss_dssp             CCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CChhHHHHHHHHHHhCCCEEEE
Confidence            998876654  55677888887

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.22  E-value=0.02  Score=48.89  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHhh-----cCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVIK-----KCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~~-----~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...       .+..+.+.     ..|++|-|+....
T Consensus       193 ~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~  272 (373)
T 2fzw_A          193 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK  272 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHH
Confidence            68899999999999999888898 79999999999998888786422       12333332     5899999998765


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       273 ~~~~  276 (373)
T 2fzw_A          273 VMRA  276 (373)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5444

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=96.21  E-value=0.0031  Score=51.68  Aligned_cols=57  Identities=21%  Similarity=0.271  Sum_probs=42.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..++..|.++|++|++.+|.+-        .+.-..+..++++  ++|+||-+..
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------D~~d~~~~~~~~~~~~~d~vi~~a~   65 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKKLL--------DITNISQVQQVVQEIRPHIIIHCAA   65 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTTTS--------CTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccccc--------CCCCHHHHHHHHHhcCCCEEEECCc
Confidence            57999985 99999999999999999999999421        1111123445555  5899998753

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=96.21  E-value=0.0085  Score=51.44  Aligned_cols=85  Identities=19%  Similarity=0.324  Sum_probs=54.2

Q ss_pred             CeEEEEcC-ChhHHHHHH-HHHHCCC---eEEEE-cCCch-hHHHHHHCCCccc--CCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGL-GIMGKAISM-NLLRNGF---KVTVW-NRTLS-KCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~-~L~~~g~---~V~~~-~r~~~-~~~~l~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|||+ |..|..|.+ .|.++.+   ++..+ .++.. ++.++......+.  .+++ ..+++|++|+|+|.....+
T Consensus         5 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v~~~~~~~-~~~~vDvvf~a~~~~~s~~   83 (377)
T 3uw3_A            5 MNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATSID-DLKKCDVIITCQGGDYTND   83 (377)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBCEETTCHH-HHHTCSEEEECSCHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEEEeCCChh-HhcCCCEEEECCChHHHHH
Confidence            68999987 999999999 7777763   55555 33211 1122321112222  2333 3578999999999876655


Q ss_pred             H--HHHhcCC--cEEeccc
Q 025163           72 S--AITSKGG--HFLEAPV   86 (257)
Q Consensus        72 ~--~~~~~g~--~~~~~pv   86 (257)
                      .  .+...|.  .++|.+-
T Consensus        84 ~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           84 VFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             HHHHHHHTTCCSEEEECSS
T ss_pred             HHHHHHHCCCCEEEEeCCc
Confidence            4  4556775  7888774

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.21  E-value=0.011  Score=50.42  Aligned_cols=66  Identities=24%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH-HCCCccc---CCH---HHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVG---GSP---AEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~-~~g~~~~---~~~---~~~~~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+. +.|+...   .+.   .+.....|+||-|+...
T Consensus       190 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~  262 (366)
T 1yqd_A          190 HIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAV  262 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcH
Confidence            688999999999999999999999999999999988877 6676422   122   12234689999998754

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=96.20  E-value=0.0047  Score=55.55  Aligned_cols=65  Identities=23%  Similarity=0.223  Sum_probs=46.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCc--ccCCHHH-HhhcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--VGGSPAE-VIKKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~-~~~~~dvii~~v~~   66 (257)
                      ++.|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.+. +..  ...+..+ .....|++|-+++.
T Consensus       366 ~vlV~GaGGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agv  434 (523)
T 2o7s_A          366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSM  434 (523)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSST
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCC
Confidence            47788999999999999999999999999999998887653 221  1122222 12247888888774

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.19  E-value=0.024  Score=48.04  Aligned_cols=82  Identities=21%  Similarity=0.220  Sum_probs=58.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc------CCHH-HH---h-----hcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPA-EV---I-----KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~------~~~~-~~---~-----~~~dvii~~v~~   66 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++.+.+++.|+...      .+.. ++   .     ...|++|-|+..
T Consensus       171 ~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~~g~  250 (352)
T 1e3j_A          171 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN  250 (352)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEECCCC
Confidence            6889999999999999998899999999999999998888886421      1211 22   1     258999999987


Q ss_pred             hHHHHH--HHHhcCCcEEe
Q 025163           67 PAAALS--AITSKGGHFLE   83 (257)
Q Consensus        67 ~~~~~~--~~~~~g~~~~~   83 (257)
                      ......  .....+..++.
T Consensus       251 ~~~~~~~~~~l~~~G~iv~  269 (352)
T 1e3j_A          251 EKCITIGINITRTGGTLML  269 (352)
T ss_dssp             HHHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHHHhcCCEEEE
Confidence            654443  22233444444

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.19  E-value=0.014  Score=49.79  Aligned_cols=69  Identities=14%  Similarity=0.139  Sum_probs=53.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc---hhHHHHHHCCCcccC--CHHHHh----hcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---SKCDELVAHGATVGG--SPAEVI----KKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~---~~~~~l~~~g~~~~~--~~~~~~----~~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++   ++.+.+++.|+...+  +..+.+    ...|++|-|+......
T Consensus       183 ~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~  260 (366)
T 2cdc_A          183 KVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGADVNI  260 (366)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCCTHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCChHHH
Confidence            58899999999999999999999999999998   888777777765431  111222    3589999999876444

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.16  E-value=0.0078  Score=51.54  Aligned_cols=67  Identities=22%  Similarity=0.259  Sum_probs=52.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC---CH---HHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG---SP---AEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~---~~---~~~~~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++.+++.|+...-   +.   .++....|+||-|+....
T Consensus       197 ~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~  269 (369)
T 1uuf_A          197 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH  269 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH
Confidence            68899999999999999988999999999999999988887864321   11   112246899999998653

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.14  E-value=0.031  Score=47.27  Aligned_cols=70  Identities=17%  Similarity=0.071  Sum_probs=54.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc------CCHHHHhh-----cCceEEEccCChHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPAEVIK-----KCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~------~~~~~~~~-----~~dvii~~v~~~~~   69 (257)
                      +|.|+|+ |.+|..+++.+...|.+|++.+|++++.+.+++.|....      .+..+.+.     ..|++|-++.....
T Consensus       172 ~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~  251 (347)
T 2hcy_A          172 WVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAA  251 (347)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHH
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHH
Confidence            5889999 999999999999999999999999999888877775321      23333333     47999999886544


Q ss_pred             HH
Q 025163           70 AL   71 (257)
Q Consensus        70 ~~   71 (257)
                      .+
T Consensus       252 ~~  253 (347)
T 2hcy_A          252 IE  253 (347)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.14  E-value=0.022  Score=48.68  Aligned_cols=71  Identities=23%  Similarity=0.199  Sum_probs=55.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh--------cCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK--------KCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~--------~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...     .+..+.+.        ..|+||-|+...
T Consensus       185 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~G~~  264 (370)
T 4ej6_A          185 TVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVA  264 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECSCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECCCCH
Confidence            68899999999999999999998 89999999999988888886532     23334333        489999999876


Q ss_pred             HHHHH
Q 025163           68 AAALS   72 (257)
Q Consensus        68 ~~~~~   72 (257)
                      .....
T Consensus       265 ~~~~~  269 (370)
T 4ej6_A          265 ETVKQ  269 (370)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.14  E-value=0.071  Score=46.27  Aligned_cols=66  Identities=18%  Similarity=0.255  Sum_probs=46.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeE-EEEcCC----------chhHHHHHHC-C------CcccCCHHHHh-hcCceEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKV-TVWNRT----------LSKCDELVAH-G------ATVGGSPAEVI-KKCTITI   61 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V-~~~~r~----------~~~~~~l~~~-g------~~~~~~~~~~~-~~~dvii   61 (257)
                      ++|.|.|.|++|...++.|.+.|..| .+.|.+          .+.+.++++. |      .+.. +.++.. .+||+++
T Consensus       222 ~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~-~~~~i~~~~~DIli  300 (424)
T 3k92_A          222 ARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVI-TNEELLEKDCDILV  300 (424)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCB-CHHHHHHSCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEe-cCccceeccccEEe
Confidence            37899999999999999999999986 566776          5566666544 2      1112 344543 4789888


Q ss_pred             EccCCh
Q 025163           62 GMLADP   67 (257)
Q Consensus        62 ~~v~~~   67 (257)
                      -|....
T Consensus       301 PcA~~n  306 (424)
T 3k92_A          301 PAAISN  306 (424)
T ss_dssp             ECSCSS
T ss_pred             ecCccc
Confidence            877654

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=96.13  E-value=0.0018  Score=51.91  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=30.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~   36 (257)
                      ++|.|.|+ |.+|..+++.|++.|++|++.+|++++.
T Consensus         2 k~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~   38 (255)
T 2dkn_A            2 SVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI   38 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE
T ss_pred             cEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc
Confidence            15777776 9999999999999999999999987653

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=96.13  E-value=0.022  Score=48.87  Aligned_cols=86  Identities=16%  Similarity=0.227  Sum_probs=54.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC---CeEEEE-cC-CchhHHHHHHC---------------------C--Ccc--cCCHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NR-TLSKCDELVAH---------------------G--ATV--GGSPA   51 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g---~~V~~~-~r-~~~~~~~l~~~---------------------g--~~~--~~~~~   51 (257)
                      ||+|+|+|++|..+.+.|.+++   .+|... ++ +++....+.+.                     |  +.+  ..+++
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd~~d~~~~a~ll~yds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   83 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITVNGKTMKIVCDRNPL   83 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEETTEEEEEECCSCGG
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEecCCCHHHHHHhhcccccCCCCCCcEEEeCCeEEECCeEEEEEecCChH
Confidence            8999999999999999999873   565544 43 33333333221                     1  111  23555


Q ss_pred             HHh---hcCceEEEccCChHHHHH--HHHhcCCc--EEecccc
Q 025163           52 EVI---KKCTITIGMLADPAAALS--AITSKGGH--FLEAPVS   87 (257)
Q Consensus        52 ~~~---~~~dvii~~v~~~~~~~~--~~~~~g~~--~~~~pv~   87 (257)
                      ++-   .++|+||.|++.....+.  .....|..  .+++|-.
T Consensus        84 ~l~w~~~gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps~  126 (380)
T 2d2i_A           84 NLPWKEWDIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPGK  126 (380)
T ss_dssp             GCCHHHHTCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCCB
T ss_pred             HCCcccCCCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCCC
Confidence            542   278999999986554443  44456877  7887744

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=96.11  E-value=0.0052  Score=50.82  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=46.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC--CCeEEEEcCCchhHHHHHHCCCcc-----c--CCHHHHhh--cCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHGATV-----G--GSPAEVIK--KCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~--g~~V~~~~r~~~~~~~l~~~g~~~-----~--~~~~~~~~--~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..+++.|.+.  |++|++.+|++++.+ +.. ++..     .  .++.++++  ++|+||-+...
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~-~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            3 PKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD-VVN-SGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH-HHH-SSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             ceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc-ccC-CCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            57999987 99999999999998  899999999876633 222 2221     1  12345566  78999988653

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=96.09  E-value=0.0048  Score=51.51  Aligned_cols=64  Identities=17%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHH-HHHHCCCcc-------cCCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-ELVAHGATV-------GGSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~-~l~~~g~~~-------~~~~~~~~~--~~dvii~~v~   65 (257)
                      |+|.|.|+ |.+|..++..|.+.|++|++.+|+..... .+. .++..       ..++.++++  ++|+||-+..
T Consensus         2 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~   76 (330)
T 2c20_A            2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAIT-EGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAA   76 (330)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSC-TTSEEEECCTTCHHHHHHHHHHSCEEEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchhhcC-CCcEEEECCCCCHHHHHHHHhhcCCCEEEECCc
Confidence            57999975 99999999999999999999998754322 111 12221       112345566  7899998764

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.09  E-value=0.009  Score=50.44  Aligned_cols=87  Identities=18%  Similarity=0.277  Sum_probs=56.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEE-cC-CchhHHHHHHC---------------------C--Ccc--cCCHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVW-NR-TLSKCDELVAH---------------------G--ATV--GGSPAE   52 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~-~r-~~~~~~~l~~~---------------------g--~~~--~~~~~~   52 (257)
                      +||+|+|.|++|..+.+.|.++. .+|... ++ +++....+.+.                     |  +.+  ..++++
T Consensus         2 ikVgI~G~G~iGr~l~R~l~~~~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~   81 (334)
T 3cmc_O            2 VKVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (334)
T ss_dssp             EEEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEEECCCHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEECCEEEEEEecCChhh
Confidence            48999999999999999998873 465544 44 33333333310                     1  111  224554


Q ss_pred             H-hh--cCceEEEccCChHHHHH--HHHhcCC--cEEecccc
Q 025163           53 V-IK--KCTITIGMLADPAAALS--AITSKGG--HFLEAPVS   87 (257)
Q Consensus        53 ~-~~--~~dvii~~v~~~~~~~~--~~~~~g~--~~~~~pv~   87 (257)
                      + ..  ++|+||.|+|.....+.  .....|.  .++++|-.
T Consensus        82 i~w~~~~vDvV~~atg~~~s~e~a~~~l~~Gak~vVId~pa~  123 (334)
T 3cmc_O           82 LAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK  123 (334)
T ss_dssp             CCTGGGTCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             cCcccCccCEEEECCCchhhHHHHHHHHHCCCCEEEEeCCCc
Confidence            4 23  78999999997655544  4556788  88888754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=96.09  E-value=0.0061  Score=52.65  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=31.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++|.|||+|..|..+|..|+++|++|+++++++.
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~   57 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE   57 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            4799999999999999999999999999998764

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=96.09  E-value=0.0063  Score=52.81  Aligned_cols=33  Identities=27%  Similarity=0.424  Sum_probs=31.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |+|.|||+|..|.+.|..|+++|++|+++++++
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSA   33 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            899999999999999999999999999999864

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.06  E-value=0.017  Score=46.55  Aligned_cols=40  Identities=13%  Similarity=0.036  Sum_probs=34.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ++-|.|. |.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus         7 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   47 (254)
T 1hdc_A            7 TVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAR   47 (254)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4556665 999999999999999999999999888776654

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=96.06  E-value=0.0071  Score=50.09  Aligned_cols=64  Identities=23%  Similarity=0.311  Sum_probs=44.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcc-c---CC---HHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATV-G---GS---PAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~-~---~~---~~~~~~--~~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..+++.|++.|++|++.+|+.. ..+.+. .++.. .   .+   +.++++  +.|+||-+..
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~   75 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVP-KGVPFFRVDLRDKEGVERAFREFRPTHVSHQAA   75 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGGGSC-TTCCEECCCTTCHHHHHHHHHHHCCSEEEECCS
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchhhcc-cCeEEEECCCCCHHHHHHHHHhcCCCEEEECcc
Confidence            89999986 99999999999999999999998533 222111 12221 1   12   334555  6899988764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.05  E-value=0.011  Score=47.03  Aligned_cols=41  Identities=24%  Similarity=0.493  Sum_probs=33.6

Q ss_pred             CeEE-EEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~-iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ||.. |.| .|.+|.++++.|++.|++|.+.+|+.++.+.+.+
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   44 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAH   44 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4544 445 5899999999999999999999999888776543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.05  E-value=0.011  Score=50.24  Aligned_cols=65  Identities=20%  Similarity=0.193  Sum_probs=52.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC------CHHHHh-hcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------SPAEVI-KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------~~~~~~-~~~dvii~~v~~   66 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++.+++.|+...-      +..+.+ ...|+||-|+..
T Consensus       182 ~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          182 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCC
Confidence            68999999999999999888899999999999999888887864321      222323 368999999976

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=96.05  E-value=0.016  Score=42.06  Aligned_cols=84  Identities=15%  Similarity=0.166  Sum_probs=55.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-CCeEEEE-cCCchhHHHHHHCCCccc--CCHHHHhh--cCceEEEccCChHHH--HH-
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHGATVG--GSPAEVIK--KCTITIGMLADPAAA--LS-   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g~~V~~~-~r~~~~~~~l~~~g~~~~--~~~~~~~~--~~dvii~~v~~~~~~--~~-   72 (257)
                      ++.|||+|..|..++..|.+. |++|..+ |.++++.... -.|+.+.  +++.+.++  ..|.|++|+|.....  .. 
T Consensus         6 ~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~-i~g~pV~g~~~l~~~~~~~~id~viia~~~~~~~~~~~i   84 (141)
T 3nkl_A            6 KVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTT-MQGITIYRPKYLERLIKKHCISTVLLAVPSASQVQKKVI   84 (141)
T ss_dssp             EEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCE-ETTEEEECGGGHHHHHHHHTCCEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCE-ecCeEEECHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHH
Confidence            689999999999999999876 7886665 6665432110 1244333  34444443  578999999965331  21 


Q ss_pred             --HHHhcCCcEEeccc
Q 025163           73 --AITSKGGHFLEAPV   86 (257)
Q Consensus        73 --~~~~~g~~~~~~pv   86 (257)
                        .+...|+.+...|-
T Consensus        85 ~~~l~~~gv~v~~vP~  100 (141)
T 3nkl_A           85 IESLAKLHVEVLTIPN  100 (141)
T ss_dssp             HHHHHTTTCEEEECCC
T ss_pred             HHHHHHcCCeEEECCC
Confidence              56677888777663

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.03  E-value=0.021  Score=48.46  Aligned_cols=82  Identities=23%  Similarity=0.237  Sum_probs=58.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc--CC---HHHH---h-----hcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG--GS---PAEV---I-----KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~--~~---~~~~---~-----~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...  .+   ..+.   +     ...|+||-|+...
T Consensus       174 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~  253 (356)
T 1pl8_A          174 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE  253 (356)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence            68899999999999999888998 89999999999998888887421  11   1221   1     2589999999876


Q ss_pred             HHHHH--HHHhcCCcEEe
Q 025163           68 AAALS--AITSKGGHFLE   83 (257)
Q Consensus        68 ~~~~~--~~~~~g~~~~~   83 (257)
                      .....  .....+..++.
T Consensus       254 ~~~~~~~~~l~~~G~iv~  271 (356)
T 1pl8_A          254 ASIQAGIYATRSGGTLVL  271 (356)
T ss_dssp             HHHHHHHHHSCTTCEEEE
T ss_pred             HHHHHHHHHhcCCCEEEE
Confidence            54443  22233444444

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=96.02  E-value=0.0049  Score=53.94  Aligned_cols=65  Identities=22%  Similarity=0.375  Sum_probs=48.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC---eEEEEc----CC----ch-hHHHHHH-------C-CCc-ccCCHHHHhhcCceE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWN----RT----LS-KCDELVA-------H-GAT-VGGSPAEVIKKCTIT   60 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~---~V~~~~----r~----~~-~~~~l~~-------~-g~~-~~~~~~~~~~~~dvi   60 (257)
                      ||.|+|+|.+|.+++..|.+.|.   +|+++|    |+    .+ ..+.+..       . +.. ...++.++++++|++
T Consensus       188 rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~aDVl  267 (439)
T 2dvm_A          188 TLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEALKDADVL  267 (439)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTTCSEE
T ss_pred             EEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHHhccCCEE
Confidence            68999999999999999999997   799999    87    32 2111221       1 111 234678889999999


Q ss_pred             EEccCC
Q 025163           61 IGMLAD   66 (257)
Q Consensus        61 i~~v~~   66 (257)
                      |-++|.
T Consensus       268 InaT~~  273 (439)
T 2dvm_A          268 ISFTRP  273 (439)
T ss_dssp             EECSCC
T ss_pred             EEcCCC
Confidence            999987

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=96.01  E-value=0.0059  Score=51.23  Aligned_cols=65  Identities=22%  Similarity=0.174  Sum_probs=44.9

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhH-HHHHH-CCCcc-----c--CCHHHHhhc--CceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVA-HGATV-----G--GSPAEVIKK--CTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~-~~l~~-~g~~~-----~--~~~~~~~~~--~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..++..|++.|++|++++|+++.. +.+.+ .++..     .  .++.+++++  +|+||-+..
T Consensus        22 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   98 (333)
T 2q1w_A           22 KKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA   98 (333)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence            5789997 59999999999999999999999975432 11211 12211     1  123455666  999998753

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.00  E-value=0.015  Score=47.58  Aligned_cols=39  Identities=26%  Similarity=0.160  Sum_probs=33.1

Q ss_pred             EEEE-cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iI-G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|. |.|.+|.++++.|++.|++|++.+|+.++.+++.+
T Consensus         8 vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   47 (281)
T 3m1a_A            8 WLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVA   47 (281)
T ss_dssp             EEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             EEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            3444 45999999999999999999999999988877654

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=96.00  E-value=0.015  Score=48.66  Aligned_cols=65  Identities=15%  Similarity=0.228  Sum_probs=45.1

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCc-h----hHHHHHHCC-Ccc-----c--CCHHHHhhc--CceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTL-S----KCDELVAHG-ATV-----G--GSPAEVIKK--CTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~-~----~~~~l~~~g-~~~-----~--~~~~~~~~~--~dvii~~v   64 (257)
                      |+|.|.| .|.+|..++..|++.|++|++.+|+. .    ..+.+...+ +..     .  .++.+++++  .|+||-+.
T Consensus         2 ~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A   81 (347)
T 1orr_A            2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLA   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEECC
Confidence            5788998 59999999999999999999998753 1    123333322 221     1  123456666  99999886


Q ss_pred             C
Q 025163           65 A   65 (257)
Q Consensus        65 ~   65 (257)
                      .
T Consensus        82 ~   82 (347)
T 1orr_A           82 G   82 (347)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=95.98  E-value=0.019  Score=46.36  Aligned_cols=40  Identities=23%  Similarity=0.235  Sum_probs=33.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ++-|.| .|.+|.++++.|++.|++|++.+|++++.+.+.+
T Consensus        14 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   54 (263)
T 3ak4_A           14 KAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVA   54 (263)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            355555 5899999999999999999999999888776654

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.97  E-value=0.0053  Score=47.51  Aligned_cols=33  Identities=24%  Similarity=0.364  Sum_probs=29.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||.|.|. |.+|..+++.|+ +|++|++.+|+++
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~   37 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG   37 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc
Confidence            78888865 899999999999 9999999999864

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=95.97  E-value=0.02  Score=47.41  Aligned_cols=64  Identities=25%  Similarity=0.250  Sum_probs=43.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcC-Cchh---HHHHHHC-----C-------CcccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNR-TLSK---CDELVAH-----G-------ATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r-~~~~---~~~l~~~-----g-------~~~~~~~~~~~~~~dvii~~   63 (257)
                      ++|.|.| .|.+|..++..|++.|++|++.+| +++.   ...+.+.     +       +.-..+..++++++|+||-+
T Consensus         2 k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   81 (322)
T 2p4h_X            2 GRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHT   81 (322)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEEC
T ss_pred             CEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEEc
Confidence            4788887 599999999999999999999988 6532   2222211     1       11122455677889999987


Q ss_pred             c
Q 025163           64 L   64 (257)
Q Consensus        64 v   64 (257)
                      .
T Consensus        82 A   82 (322)
T 2p4h_X           82 A   82 (322)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.95  E-value=0.025  Score=48.94  Aligned_cols=66  Identities=21%  Similarity=0.155  Sum_probs=53.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...     .+..+.+      .+.|++|-|+...
T Consensus       216 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~~  293 (404)
T 3ip1_A          216 NVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGVP  293 (404)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCCc
Confidence            58899999999999999999998 89999999999998888886432     2233322      2589999999887

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.94  E-value=0.015  Score=46.62  Aligned_cols=39  Identities=21%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus        13 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~   52 (255)
T 1fmc_A           13 CAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVV   52 (255)
T ss_dssp             EEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence            455665 499999999999999999999999988766543

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=95.94  E-value=0.015  Score=47.47  Aligned_cols=40  Identities=23%  Similarity=0.384  Sum_probs=33.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.|.+|.++++.|++.|++|++.+|+.++++++.+
T Consensus        29 k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   70 (272)
T 4dyv_A           29 KIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAA   70 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45555  55899999999999999999999999888776654

>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A*

Probab=95.93  E-value=0.038  Score=49.66  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=56.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHH----HHHHCC--Ccc---cCCH--
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCD----ELVAHG--ATV---GGSP--   50 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~----~l~~~g--~~~---~~~~--   50 (257)
                      ||.|||+|.+|..++.+|+..|. +++++|.+.=                   |++    .+++.+  +.+   ..++  
T Consensus        34 ~VlvvG~GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~lNp~v~v~~~~~~~~~  113 (531)
T 1tt5_A           34 HVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPEN  113 (531)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBTSBHHHHHHHHHHTTCTTSBCCEESSCHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcCcHHHHHHHHHHHHhCCCCeEEEeCCCcch
Confidence            79999999999999999999996 7999986642                   122    222221  211   1122  


Q ss_pred             -----HHHhhcCceEEEccCChHHHHH---HHHhcCCcEEecccc
Q 025163           51 -----AEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVS   87 (257)
Q Consensus        51 -----~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~   87 (257)
                           .+.+++.|+||.|+-+......   .....++.++++...
T Consensus       114 ~~~~~~~~~~~~DvVi~~~d~~~~r~~ln~~c~~~~iplI~~~~~  158 (531)
T 1tt5_A          114 LLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTY  158 (531)
T ss_dssp             HHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hhhhhHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEEec
Confidence                 2456789999999766544332   445567777776543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=95.93  E-value=0.015  Score=47.52  Aligned_cols=39  Identities=18%  Similarity=0.195  Sum_probs=32.9

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|.| .|.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus        35 ~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   74 (276)
T 3r1i_A           35 ALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVAD   74 (276)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            44555 5999999999999999999999999888776654

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=95.92  E-value=0.0065  Score=51.69  Aligned_cols=32  Identities=19%  Similarity=0.196  Sum_probs=30.0

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |.|||+|..|...|..|+++|++|++++|.++
T Consensus         7 ViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~   38 (397)
T 3oz2_A            7 VLVVGGGPGGSTAARYAAKYGLKTLMIEKRPE   38 (397)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999998653

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=95.91  E-value=0.016  Score=46.88  Aligned_cols=39  Identities=18%  Similarity=0.286  Sum_probs=33.2

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|.| .|.+|.++++.|++.|++|++.+|+.++.+++.+
T Consensus        11 vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   50 (259)
T 4e6p_A           11 ALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAA   50 (259)
T ss_dssp             EEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            45555 5999999999999999999999999888776654

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=95.91  E-value=0.013  Score=46.67  Aligned_cols=39  Identities=18%  Similarity=0.355  Sum_probs=33.1

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|.| .|.+|.++++.|++.|++|++.+|++++++++.+
T Consensus         6 vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   45 (235)
T 3l6e_A            6 IIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQEL   45 (235)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44555 5899999999999999999999999988776654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.90  E-value=0.027  Score=43.42  Aligned_cols=65  Identities=18%  Similarity=0.055  Sum_probs=48.5

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~   66 (257)
                      +|.|+| .|.+|..+++.+...|.+|++.+|++++.+.+.+.|....     .+..+.+      ...|++|-|+..
T Consensus        41 ~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  117 (198)
T 1pqw_A           41 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  117 (198)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             EEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCch
Confidence            578889 6999999999999999999999999998887777665321     1222221      147888888753

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=95.90  E-value=0.0082  Score=48.42  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=32.9

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      ||..+|  |.|.+|.++++.|++.|++|++.+|++++.+.+.
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~   42 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELE   42 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHH
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            775555  5699999999999999999999999988766543

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=95.90  E-value=0.0062  Score=52.08  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=46.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CeEEEEcCCchhHH-HHH-HCCCcc----cCC---HHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCD-ELV-AHGATV----GGS---PAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~~V~~~~r~~~~~~-~l~-~~g~~~----~~~---~~~~~~~~dvii~~v~~   66 (257)
                      |+|.|.|+ |.+|..++..|++.| ++|++++|+++... .+. ..++..    ..+   +.++++++|+||-+...
T Consensus        33 ~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~  109 (377)
T 2q1s_A           33 TNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATY  109 (377)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCc
Confidence            57999985 999999999999999 99999999865421 121 112211    112   33455689999988653

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.89  E-value=0.014  Score=46.72  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=32.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCC-chhHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRT-LSKCDELV   40 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~-~~~~~~l~   40 (257)
                      +|.|.| .|.+|..+++.|+++|++|++.+|+ +++.+.+.
T Consensus         9 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   49 (258)
T 3afn_B            9 RVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETI   49 (258)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHH
T ss_pred             EEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHH
Confidence            455555 5999999999999999999999998 77666543

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.89  E-value=0.026  Score=48.46  Aligned_cols=71  Identities=18%  Similarity=0.123  Sum_probs=54.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCccc--CC---HH---HHh------hcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG--GS---PA---EVI------KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~~--~~---~~---~~~------~~~dvii~~v~~   66 (257)
                      +|.|+|+|.+|...++.+...| .+|++.++++++.+.+++.|+...  .+   ..   +.+      ...|+||-|+..
T Consensus       198 ~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~~g~  277 (380)
T 1vj0_A          198 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGD  277 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEECCCC
Confidence            5889999999999999999999 699999999999999988886522  11   11   222      158999999986


Q ss_pred             hHHHHH
Q 025163           67 PAAALS   72 (257)
Q Consensus        67 ~~~~~~   72 (257)
                      +.....
T Consensus       278 ~~~~~~  283 (380)
T 1vj0_A          278 SRALLE  283 (380)
T ss_dssp             TTHHHH
T ss_pred             HHHHHH
Confidence            544443

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.88  E-value=0.014  Score=48.32  Aligned_cols=65  Identities=17%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCH------HHHhhcCceEEEccCCh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP------AEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~------~~~~~~~dvii~~v~~~   67 (257)
                      +|.|+|+ |.+|...++.+...|.+|++.++++++.+.+++.|+....+.      .+.+.+.|++|- +...
T Consensus       128 ~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~~  199 (302)
T 1iz0_A          128 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRGK  199 (302)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSCT
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCHH
Confidence            5889998 999999999999999999999999999998888886532222      222356899998 7663

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=95.87  E-value=0.019  Score=46.31  Aligned_cols=40  Identities=15%  Similarity=0.106  Sum_probs=33.2

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +|-|.| .|.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus        14 ~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~   54 (265)
T 2o23_A           14 VAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   54 (265)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHH
Confidence            355665 5999999999999999999999999887766543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.85  E-value=0.014  Score=51.58  Aligned_cols=67  Identities=18%  Similarity=0.366  Sum_probs=51.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC--CCcc----cCCHH---H-HhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV----GGSPA---E-VIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~--g~~~----~~~~~---~-~~~~~dvii~~v~~~~~   69 (257)
                      +|-|+|.|++|..+|+.|- .+++|.+.++++++++.+.+.  +..+    .++.+   | -+.++|+++.++.++..
T Consensus       237 ~v~I~GgG~ig~~lA~~L~-~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~De~  313 (461)
T 4g65_A          237 RIMIVGGGNIGASLAKRLE-QTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNEDET  313 (461)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSCHHH
T ss_pred             EEEEEcchHHHHHHHHHhh-hcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccCcHH
Confidence            6899999999999999985 469999999999999999874  2221    11222   2 24789999988887754

>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1

Probab=95.85  E-value=0.06  Score=47.63  Aligned_cols=126  Identities=16%  Similarity=0.144  Sum_probs=71.8

Q ss_pred             CeEEEEcCChhH-HHHHHHHHHCCCeEEEEcCCchh-HHHHHHCCCcccCC-HHHHhhcCceEEEcc--CChHHHHHHHH
Q 025163            1 MEVGFLGLGIMG-KAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGS-PAEVIKKCTITIGML--ADPAAALSAIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG-~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~g~~~~~~-~~~~~~~~dvii~~v--~~~~~~~~~~~   75 (257)
                      |+|-+||.|.+| +.+|+.|.+.|++|+++|..... .+.|.+.|+.+... ..+.+.++|+|+..-  |.....-...+
T Consensus        13 ~~~h~i~I~G~G~sglA~~l~~~G~~V~g~D~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~   92 (469)
T 1j6u_A           13 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRAR   92 (469)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCHHHHHHH
T ss_pred             ccEEEEEEcccCHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEECCCCHHHCCCCCEEEECCCcCCCCHHHHHHH
Confidence            555444443333 34489999999999999986543 35677778765431 122335789888753  33222222456


Q ss_pred             hcCCcEEeccccCCccccc--cCcEEEEecC--ChhhHHHHHHHHHHhcCCe-EEeC
Q 025163           76 SKGGHFLEAPVSGSKQPAE--TGQLVILSAG--EKALYDEAISALNVIGKKA-FFLG  127 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~--~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~-~~~g  127 (257)
                      ..|+.++.-+-.-... ..  ..+..-+.|.  ...+...+..+|+..|.++ .+++
T Consensus        93 ~~gi~v~~~~e~l~~~-~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G~~~~~~~~  148 (469)
T 1j6u_A           93 MERVPIENRLHYFRDT-LKREKKEEFAVTGTDGKTTTTAMVAHVLKHLRKSPTVFLG  148 (469)
T ss_dssp             HTTCCEEEHHHHHHHH-HHHHCCCEEEEECSSSHHHHHHHHHHHHHHTTCCCEEECS
T ss_pred             HcCCcEEEHHHHHHHH-HhccCCCEEEEECCCCHHHHHHHHHHHHHHcCCCceEEEC
Confidence            6788777744211111 11  1233334443  3466677899999888654 3444

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=95.84  E-value=0.009  Score=51.71  Aligned_cols=33  Identities=27%  Similarity=0.434  Sum_probs=31.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |+|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~   33 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLP   33 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCC
Confidence            899999999999999999999999999998864

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=95.84  E-value=0.0036  Score=52.93  Aligned_cols=82  Identities=12%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeE---EEE-cCCch--hHHHHHHCCCccc-CCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKV---TVW-NRTLS--KCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V---~~~-~r~~~--~~~~l~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|+| .|.+|..+.+.|.+++|++   ... ++..+  ++. +....+.+. .++.+ + ++|+||.|+|.....+.
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~-~~g~~i~v~~~~~~~-~-~~DvV~~a~g~~~s~~~   77 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLA-FRGEEIPVEPLPEGP-L-PVDLVLASAGGGISRAK   77 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEE-ETTEEEEEEECCSSC-C-CCSEEEECSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEE-EcCceEEEEeCChhh-c-CCCEEEECCCccchHHH
Confidence            8999999 9999999999999877752   222 21100  000 000011111 13333 3 89999999997666554


Q ss_pred             --HHHhcCCcEEecc
Q 025163           73 --AITSKGGHFLEAP   85 (257)
Q Consensus        73 --~~~~~g~~~~~~p   85 (257)
                        .+...|...+|.+
T Consensus        78 a~~~~~~G~~vId~s   92 (331)
T 2yv3_A           78 ALVWAEGGALVVDNS   92 (331)
T ss_dssp             HHHHHHTTCEEEECS
T ss_pred             HHHHHHCCCEEEECC
Confidence              5556788888855

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=95.82  E-value=0.0093  Score=48.87  Aligned_cols=57  Identities=19%  Similarity=0.160  Sum_probs=42.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~   65 (257)
                      |||.|.|. |.+|..++..|.+.|++|++++|+.-        .+.-..++.++++  ++|+||-|..
T Consensus        13 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~--------Dl~d~~~~~~~~~~~~~d~vih~A~   72 (292)
T 1vl0_A           13 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL--------DITNVLAVNKFFNEKKPNVVINCAA   72 (292)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC--------CTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             ceEEEECCCChHHHHHHHHHHhCCCeEEeccCccC--------CCCCHHHHHHHHHhcCCCEEEECCc
Confidence            47888865 99999999999999999999999621        1111123445555  6899998764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=95.82  E-value=0.014  Score=47.29  Aligned_cols=40  Identities=18%  Similarity=0.164  Sum_probs=34.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|.+|.+++|++++++++.+
T Consensus         8 KvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~   49 (254)
T 4fn4_A            8 KVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQ   49 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            57777  66899999999999999999999999988776654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=95.79  E-value=0.021  Score=46.18  Aligned_cols=40  Identities=18%  Similarity=0.083  Sum_probs=33.3

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ++-|.| .|.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus         9 ~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~   49 (260)
T 1nff_A            9 VALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA   49 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            355565 5999999999999999999999999887776543

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=95.79  E-value=0.019  Score=46.14  Aligned_cols=40  Identities=25%  Similarity=0.217  Sum_probs=33.3

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.|.+|.++++.|++.|++|++.+|++++.+++.+
T Consensus        10 k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~   51 (248)
T 3op4_A           10 KVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISD   51 (248)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            44444  55899999999999999999999999888776654

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=95.78  E-value=0.01  Score=49.25  Aligned_cols=58  Identities=17%  Similarity=0.078  Sum_probs=42.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~   65 (257)
                      |||.|.|+ |.+|..++..|.+.|++|++.+|+.+       ..+.-..++.++++  ++|+||-+..
T Consensus         4 ~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~~-------~D~~d~~~~~~~~~~~~~d~vih~a~   64 (321)
T 1e6u_A            4 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE-------LNLLDSRAVHDFFASERIDQVYLAAA   64 (321)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT-------CCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCcc-------CCccCHHHHHHHHHhcCCCEEEEcCe
Confidence            57999985 99999999999999999999887631       11111123445566  8999998764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.78  E-value=0.028  Score=48.03  Aligned_cols=71  Identities=17%  Similarity=0.135  Sum_probs=54.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHhh-----cCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVIK-----KCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~~-----~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++.+.+++.|+...     .+..+.+.     ..|+||-|+......
T Consensus       193 ~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~~~~  272 (371)
T 1f8f_A          193 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL  272 (371)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCHHHH
Confidence            68899999999999998888898 69999999999988888776421     13333222     479999999876554


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      ..
T Consensus       273 ~~  274 (371)
T 1f8f_A          273 KQ  274 (371)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=95.77  E-value=0.0017  Score=52.76  Aligned_cols=61  Identities=16%  Similarity=0.147  Sum_probs=44.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-----cc--CCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-----VG--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-----~~--~~~~~~~~~~dvii~~v~   65 (257)
                      +|.|.|+ |.+|..++..|.+.|++|++.+|++++..   ..++.     +.  .+..+++++.|+||-+..
T Consensus         4 ~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   72 (267)
T 3ay3_A            4 RLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA---EAHEEIVACDLADAQAVHDLVKDCDGIIHLGG   72 (267)
T ss_dssp             EEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC---CTTEEECCCCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             eEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc---CCCccEEEccCCCHHHHHHHHcCCCEEEECCc
Confidence            7889987 99999999999999999999999875421   11221     11  123456778999998863

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=95.77  E-value=0.008  Score=50.56  Aligned_cols=66  Identities=14%  Similarity=0.230  Sum_probs=45.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHC--CCeEEEEcCCch-----hHHHHHHCCCcc-----c--CCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRN--GFKVTVWNRTLS-----KCDELVAHGATV-----G--GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~--g~~V~~~~r~~~-----~~~~l~~~g~~~-----~--~~~~~~~~~~dvii~~v~   65 (257)
                      |+|.|.| .|.+|..++..|++.  |++|++.+|++.     .++.+...++..     .  .+..++++++|+||-|..
T Consensus         5 ~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~   84 (348)
T 1oc2_A            5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAA   84 (348)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECCS
T ss_pred             cEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECCc
Confidence            4688998 599999999999998  899999998642     222221112211     1  134456778899998865


Q ss_pred             C
Q 025163           66 D   66 (257)
Q Consensus        66 ~   66 (257)
                      .
T Consensus        85 ~   85 (348)
T 1oc2_A           85 E   85 (348)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=95.77  E-value=0.01  Score=45.02  Aligned_cols=32  Identities=31%  Similarity=0.372  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|.|||.|..|..+|..|.+.|.+|+++++++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            79999999999999999999999999999876

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=95.77  E-value=0.026  Score=48.31  Aligned_cols=35  Identities=23%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHH-HCCCeEEEEcCCchh
Q 025163            1 MEVGFLGL-GIMGKAISMNLL-RNGFKVTVWNRTLSK   35 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~-~~g~~V~~~~r~~~~   35 (257)
                      |+|.|.|+ |.+|..++..|+ +.|++|++++|+...
T Consensus         3 m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~   39 (397)
T 1gy8_A            3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGT   39 (397)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcc
Confidence            78999985 999999999999 999999999987544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1vpda1	133	a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge	5e-26
d2cvza1	132	a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge	3e-25
d3cuma1	134	a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge	1e-24
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	2e-21
d3cuma2	162	c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase	2e-17
d2cvza2	156	c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase	1e-15
d1i36a2	152	c.2.1.6 (A:1-152) Conserved hypothetical protein M	1e-14
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	3e-14
d2pgda2	176	c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase	1e-12
d2i76a2	153	c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The	9e-12
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	5e-06
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	1e-05
d1txga2	180	c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogen	1e-05
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	1e-05
d2ahra2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	2e-05
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	5e-05
d2pv7a2	152	c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {	5e-05
d1ks9a2	167	c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Esc	2e-04
d1yqga2	152	c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductas	5e-04

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 96.7 bits (240), Expect = 5e-26
 Identities = 34/126 (26%), Positives = 59/126 (46%)

Query: 128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPT 187
           ++G G   KL   +I+   +   SE L LA K+G++P  +   +  G   + +   K P 
Sbjct: 1   DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60

Query: 188 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 247
           ++  N+ P F +    KD+  AL         +P+ AA  E  +  R+ G G++D SA+ 
Sbjct: 61  VMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALA 120

Query: 248 EVVKDL 253
              + L
Sbjct: 121 CYYEKL 126

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 94.8 bits (235), Expect = 3e-25
 Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 1/126 (0%)

Query: 129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTM 188
           VG G  +K + N ++   +    EGL+   K G+     L+V++     +   +   P  
Sbjct: 1   VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR 60

Query: 189 -LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVF 247
            L   +   F L    KD+ +A+ + D      P+   A E ++ A+     D D     
Sbjct: 61  VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEAL 120

Query: 248 EVVKDL 253
            +++  
Sbjct: 121 RLLERW 126

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 93.6 bits (232), Expect = 1e-24
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGG-------IANPMF 181
            G G   K+  N ++  +M   +E + L   +GL+ + L +++           + NP  
Sbjct: 2   DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61

Query: 182 KGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDN 241
                     +Y+  F  +   KD+ LA      +A S P+ + A   ++     G  + 
Sbjct: 62  GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121

Query: 242 DFSAVFEV 249
           DFS V ++
Sbjct: 122 DFSVVQKL 129

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 86.0 bits (212), Expect = 2e-21
 Identities = 41/161 (25%), Positives = 68/161 (42%), Gaps = 34/161 (21%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VGF+GLGIMGK +S NLL+ G+ + V +R      +++A GA    +   + ++C + 
Sbjct: 1   MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVI 60

Query: 61  IGMLADPAAALSAIT----------------------------------SKGGHFLEAPV 86
           I ML +                                           +KG   L+APV
Sbjct: 61  ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPV 120

Query: 87  SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 127
           SG +  A  G L ++  G+KA++D+    +  +       G
Sbjct: 121 SGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 74.9 bits (183), Expect = 2e-17
 Identities = 38/159 (23%), Positives = 60/159 (37%), Gaps = 34/159 (21%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+GLG MG  ++ NLL+ G+ + V++   S  D LVA GA+   S  + ++   + I 
Sbjct: 4   IAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVIS 63

Query: 63  MLADPAAALS----------------------------------AITSKGGHFLEAPVSG 88
           ML                                          A   +G   L+APVSG
Sbjct: 64  MLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSG 123

Query: 89  SKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 127
               A  G L  +  G+    ++A      +G+  F  G
Sbjct: 124 GTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

 Score = 69.9 bits (170), Expect = 1e-15
 Identities = 35/155 (22%), Positives = 50/155 (32%), Gaps = 32/155 (20%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI- 61
           V F+GLG MG  ++ +L R    + VWNRT  K         +       V +   I   
Sbjct: 3   VAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTC 61

Query: 62  -----------------------------GMLADPAAALSAITSKGGHFLEAPVSGSKQP 92
                                        G           +  KG  +L+APVSG    
Sbjct: 62  LPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSG 121

Query: 93  AETGQLVILSAGEKALYDEAISALNVIGKKAFFLG 127
           AE G L ++  G +   +     L    KK   +G
Sbjct: 122 AEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVG 155

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 67.2 bits (163), Expect = 1e-14
 Identities = 28/154 (18%), Positives = 48/154 (31%), Gaps = 30/154 (19%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           + VGF+G G + + ++  L   G +V       S      A    V  +  E +  C + 
Sbjct: 1   LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVV 60

Query: 61  IGMLADPAAALSAITS--------------------------KGGHFLEAPVSGSKQPAE 94
           I  +    A  +A  +                          + G F++A + GS +   
Sbjct: 61  ISAVTPGVALGAARRAGRHVRGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRRKG 120

Query: 95  TGQLVILSAGEKALYDEAISALNVIGKKAFFLGE 128
               +I S  +     E    LN  G      G 
Sbjct: 121 ADIRIIASGRDA----EEFMKLNRYGLNIEVRGR 150

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 67.0 bits (162), Expect = 3e-14
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 47/178 (26%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
           M+VG +GLG+MG  +++N+   GFKV V+NRT SK +E +   A+   +      +    
Sbjct: 2   MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEA 61

Query: 61  IGMLA------------------------------------------DPAAALSAITSKG 78
                                                          D       + + G
Sbjct: 62  FAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG 121

Query: 79  GHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAF----FLGEVGNG 132
             FL   +SG ++ A  G       G  ++++E    +     KA      +   G+G
Sbjct: 122 LRFLGMGISGGEEGARKGPAFFPG-GTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

 Score = 62.7 bits (151), Expect = 1e-12
 Identities = 31/162 (19%), Positives = 55/162 (33%), Gaps = 40/162 (24%)

Query: 1   MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP---------- 50
            ++  +GL +MG+ + +N+  +GF V  +NRT+SK D+ +A+ A                
Sbjct: 3   ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS 62

Query: 51  -------------------------AEVIKKCTITI----GMLADPAAALSAITSKGGHF 81
                                      ++    I I        D       +  KG  F
Sbjct: 63  KLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF 122

Query: 82  LEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKA 123
           + + VSG +  A  G  ++   G K  +    +    I  K 
Sbjct: 123 VGSGVSGGEDGARYGPSLMPG-GNKEAWPHIKAIFQGIAAKV 163

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.2 bits (142), Expect = 9e-12
 Identities = 16/150 (10%), Positives = 36/150 (24%), Gaps = 24/150 (16%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
           + F+G G + +     L        + +R++ +   L         +  +  +   +   
Sbjct: 2   LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFV 61

Query: 63  MLADPAAA------------------------LSAITSKGGHFLEAPVSGSKQPAETGQL 98
           ++ D                                     H   +  S  K      Q+
Sbjct: 62  IVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQI 121

Query: 99  VILSAGEKALYDEAISALNVIGKKAFFLGE 128
           V    G++            I  K F +  
Sbjct: 122 VFGLEGDERGLPIVKKIAEEISGKYFVIPS 151

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 43.2 bits (100), Expect = 5e-06
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
          M++G +GLG++G +++ +L R G  +   +R  S C++ V  
Sbjct: 1  MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER 42

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 42.6 bits (99), Expect = 1e-05
 Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 2/131 (1%)

Query: 3   VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIG 62
              LGLG  G A +  L   G  V  W+    +  E+   GA +   P          + 
Sbjct: 4   YAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLT 63

Query: 63  MLADPAAALS--AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIG 120
                A   +   +         +  +        GQL+IL+ G      E    L   G
Sbjct: 64  SDIGLAVKDADVILIVVPAIHHASIAANIASYISEGQLIILNPGATGGALEFRKILRENG 123

Query: 121 KKAFFLGEVGN 131
                +GE  +
Sbjct: 124 APEVTIGETSS 134

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 180

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36
          M V  LG G MG A+S+ L+ NG +V +W       
Sbjct: 1  MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTE 36

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 42.3 bits (98), Expect = 1e-05
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 3  VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH 42
          V  LG G + +     L  +G KVTV  RTL    +L A 
Sbjct: 5  VLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAG 44

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 41.6 bits (96), Expect = 2e-05
 Identities = 10/38 (26%), Positives = 20/38 (52%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38
          M++G +G+G M  AI   L +   ++ +   +L +  E
Sbjct: 1  MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKE 38

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 1  MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSP 50
          M V  L G G +GK +++ L   G ++ V +R   K +   A    + G  
Sbjct: 1  MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDA 51

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

 Score = 40.2 bits (93), Expect = 5e-05
 Identities = 19/141 (13%), Positives = 44/141 (31%), Gaps = 25/141 (17%)

Query: 3   VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI------- 54
           +  +G  G +G   +  L  +G+ +++ +R      E +   A V      +        
Sbjct: 12  IVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESILANADVVIVSVPINLTLETIE 71

Query: 55  ---------KKCTITIGMLADPAAALSAITSK---GGHFLEAPVSGSKQPAETGQLVILS 102
                            +  +P A +  + +    G H +          +   Q+V+  
Sbjct: 72  RLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIA----SMAKQVVVRC 127

Query: 103 AG-EKALYDEAISALNVIGKK 122
            G     Y+  +  + + G K
Sbjct: 128 DGRFPERYEWLLEQIQIWGAK 148

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
          M++  LG G +G+     L + G +V  W R
Sbjct: 1  MKITVLGCGALGQLWLTALCKQGHEVQGWLR 31

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} Length = 152

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 1  MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCD 37
          M V FLG G M  A++  L++ G +++ + NR   K +
Sbjct: 1  MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRE 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.96
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.94
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.92
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.9
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.9
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.89
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.88
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.88
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.81
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.79
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.75
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.63
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.63
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.63
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.61
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.56
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	99.49
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.43
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.39
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	99.29
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.28
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.25
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.1
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.04
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	99.03
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.94
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.83
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.82
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.8
d1mv8a1	98	GDP-mannose 6-dehydrogenase, middle domain {Pseudo	98.78
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.78
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.64
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.61
d1dlja1	98	UDP-glucose dehydrogenase (UDPGDH), middle domain	98.57
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.57
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.56
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.56
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.55
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.53
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	98.53
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.5
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.5
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.49
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	98.48
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.45
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.36
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.33
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.31
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	98.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	98.29
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	98.28
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	98.27
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	98.27
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.26
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	98.26
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	98.25
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.23
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	98.2
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.16
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.14
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.14
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.13
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.13
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	98.13
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.12
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.11
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.09
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.08
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.06
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.02
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	98.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	98.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.99
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.98
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.94
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	97.93
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.92
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	97.89
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.88
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.83
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.77
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.77
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	97.75
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.73
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.72
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.71
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	97.62
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.57
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.57
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	97.56
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	97.56
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.56
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.55
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.51
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.51
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.5
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.5
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.48
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.47
d1ks9a1	124	Ketopantoate reductase PanE {Escherichia coli [Tax	97.46
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.45
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.44
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	97.43
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.43
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.43
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.42
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.39
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.38
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.38
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.35
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.32
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	97.3
d1txga1	155	Glycerol-3-phosphate dehydrogenase {Archaeoglobus	97.29
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	97.25
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.18
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.17
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	97.12
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.11
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.09
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.08
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.07
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.05
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	97.03
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	97.01
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	96.99
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.97
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.9
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	96.9
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.89
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.83
d1n1ea1	160	Glycerol-3-phosphate dehydrogenase {Trypanosome (L	96.82
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.82
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	96.8
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.8
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.77
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.74
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	96.74
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.74
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.73
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	96.73
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	96.71
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.7
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.69
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.69
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.68
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	96.68
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	96.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	96.68
d1i36a1	112	Conserved hypothetical protein MTH1747 {Archaeon M	96.67
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.64
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.62
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	96.62
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.62
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.62
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.6
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	96.58
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	96.58
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.58
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.57
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.56
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	96.56
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.55
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	96.53
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.5
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.48
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.47
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.47
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	96.42
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.41
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.39
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	96.35
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.33
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.32
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.31
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.29
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	96.29
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.28
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.27
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.27
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	96.27
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.26
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	96.25
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	96.24
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	96.24
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.23
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.23
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.22
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.21
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	96.2
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	96.19
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.18
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.17
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.17
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.15
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.15
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	96.13
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.12
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.12
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	96.11
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.11
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.1
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.09
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.08
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	96.07
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.07
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.05
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.05
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	96.03
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.03
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	95.99
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.99
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	95.98
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.96
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	95.95
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	95.94
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	95.92
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	95.92
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.9
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.88
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	95.88
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	95.88
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	95.86
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.85
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.85
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.81
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	95.78
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	95.75
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.71
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	95.71
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.69
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	95.68
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	95.63
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	95.62
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.62
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	95.62
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.57
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	95.4
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.28
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.22
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	95.21
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	95.17
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	95.17
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.13
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	95.13
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	95.11
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.11
d2pgda1	297	6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov	95.07
d1pgja1	300	6-phosphogluconate dehydrogenase (6PGD) {Trypanoso	94.99
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	94.98
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	94.92
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	94.86
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	94.75
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	94.73
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	94.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	94.61
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.54
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	94.54
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	94.48
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.47
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.43
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.42
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	94.41
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	94.38
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.36
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.3
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.27
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	94.24
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	94.11
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	94.1
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	93.91
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.77
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.77
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	93.75
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	93.7
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	93.64
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	93.64
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	93.43
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	93.35
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	93.35
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	93.34
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	93.21
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.1
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.08
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	93.0
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	92.94
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	92.88
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.87
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	92.85
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	92.78
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.76
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	92.69
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	92.69
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	92.67
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.54
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	92.36
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.35
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.33
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	92.3
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	92.26
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.22
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.2
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.06
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	91.96
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.88
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.77
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.69
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	91.56
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.53
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	91.53
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	91.51
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.47
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	91.43
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	91.41
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	91.3
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	91.27
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	91.26
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	91.23
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	91.16
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	91.16
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	91.13
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	91.09
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	91.05
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.0
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	90.91
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	90.81
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	90.77
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	90.67
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	90.66
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.42
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	90.38
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.28
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	90.25
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	90.23
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	90.1
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	90.09
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.07
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	89.78
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	89.75
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	89.52
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	89.42
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	89.36
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	89.27
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	89.19
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	88.94
d1iira_	401	UDP-glucosyltransferase GtfB {Amycolatopsis orient	88.4
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	88.36
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	88.35
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.11
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	87.59
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	87.15
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	87.14
d2ftsa3	155	Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId	86.69
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	86.63
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.62
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.58
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.84
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	85.39
d1bg6a1	172	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	85.29
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	85.29
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	84.84
d1t0ia_	185	Hypothetical protein Ylr011wp {Baker's yeast (Sacc	84.76
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	84.49
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	83.6
d1oi7a1	121	Succinyl-CoA synthetase, alpha-chain, N-terminal (	83.41
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	83.36
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	83.25
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	83.17
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	82.99
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	82.49
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	82.32
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	82.24
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	82.01
d2nu7a1	119	Succinyl-CoA synthetase, alpha-chain, N-terminal (	81.79
d1q7ra_	202	Hypothetical protein YaaE {Bacillus stearothermoph	81.52
d2qwxa1	230	Quinone reductase type 2 (menadione reductase) {Hu	81.48
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	81.46
d1pn3a_	391	TDP-epi-vancosaminyltransferase GtfA {Amycolatopsi	80.47
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.42
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.33
d1g2ia_	166	Intracellular protease {Archaeon Pyrococcus horiko	80.3

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.96  E-value=3.7e-29  Score=191.04  Aligned_cols=127  Identities=33%  Similarity=0.636  Sum_probs=121.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||||||+|.||.+||++|+++||+|++|||++++.+.+.+.+.....++.|+++++|+||+|||++...+.        
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999888776        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .++.+|+.|+++|+++++..+..+++.+++||+++.+++++++|+.++.+++|+
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~  160 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT  160 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEE
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEC
Confidence                                      566779999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 025163          127 G  127 (257)
Q Consensus       127 g  127 (257)
                      |
T Consensus       161 G  161 (161)
T d1vpda2         161 G  161 (161)
T ss_dssp             E
T ss_pred             C
Confidence            6

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=4e-27  Score=179.77  Aligned_cols=127  Identities=30%  Similarity=0.552  Sum_probs=120.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      +||||||+|.||.+||++|.++||+|.+|||++++.+.+...+.....++.|+++.+|+|++|||++...+.        
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            479999999999999999999999999999999999999999999999999999999999999999887665        


Q ss_pred             --------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 --------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 --------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                                .++.+|+.|+++|+++++..+..|++.+++||+++.+++++++|+.++.+++|+
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~  161 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHA  161 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEE
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEEC
Confidence                                      677789999999999999999999999999999999999999999999999998


Q ss_pred             C
Q 025163          127 G  127 (257)
Q Consensus       127 g  127 (257)
                      |
T Consensus       162 G  162 (162)
T d3cuma2         162 G  162 (162)
T ss_dssp             E
T ss_pred             c
Confidence            6

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.92  E-value=1.8e-24  Score=159.30  Aligned_cols=128  Identities=27%  Similarity=0.459  Sum_probs=124.1

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHH
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      ++|+++.+|+++|.+.+.+..++.|++.++++.|+|++++.++++.+++.|+.++++.+++++++|.|+|++..+.||++
T Consensus         1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~   80 (133)
T d1vpda1           1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA   80 (133)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      ++.+++++.|+|+|+++.+.+.|+.+.+.|+++.|++++++++++..+
T Consensus        81 l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~~~  128 (133)
T d1vpda1          81 NALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKLAK  128 (133)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999988653

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.90  E-value=3.2e-24  Score=165.70  Aligned_cols=122  Identities=26%  Similarity=0.398  Sum_probs=108.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc--------ccCCHHHHhhcCceEEEccCChHHHHH-
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT--------VGGSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~--------~~~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      +|||||+|.||.+||++|+++||+|++|||++++.+++.+.+.+        ...++.+++..+|++++|+|+...+.. 
T Consensus         4 nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v   83 (176)
T d2pgda2           4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNF   83 (176)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHH
T ss_pred             cEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHHH
Confidence            69999999999999999999999999999999999999887542        233555677889999999999877654 


Q ss_pred             ------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCC
Q 025163           73 ------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKK  122 (257)
Q Consensus        73 ------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~  122 (257)
                                                    .+..+|+.|+|+|+++++..+..|. .+++||+++.+++++++|+.++.+
T Consensus        84 ~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~~~~k  162 (176)
T d2pgda2          84 IEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAK  162 (176)
T ss_dssp             HHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSCB
T ss_pred             HHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHHHhcc
Confidence                                          6667899999999999999999998 789999999999999999999988


Q ss_pred             eE
Q 025163          123 AF  124 (257)
Q Consensus       123 ~~  124 (257)
                      +.
T Consensus       163 v~  164 (176)
T d2pgda2         163 VG  164 (176)
T ss_dssp             CT
T ss_pred             cC
Confidence            64

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.7e-23  Score=152.69  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=121.7

Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCC-cccCCCCCCCcccchHHHHHH
Q 025163          129 VGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       129 ~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      +|+++.+|+++|++......++.|++.++++.|+|++.+.++++.+++.|+.+..+.+ .+..++|.++|++..+.||++
T Consensus         1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~   80 (132)
T d2cvza1           1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG   80 (132)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence            5899999999999999999999999999999999999999999999999999988876 588999999999999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhhcc
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKR  255 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~~~  255 (257)
                      ++.+.+++.|+|+|+.+.+.+.|+.+.+.|+++.|+++++++|++..+
T Consensus        81 l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~~g  128 (132)
T d2cvza1          81 IAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERWGG  128 (132)
T ss_dssp             HHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHHHT
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999998763

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.89  E-value=1.4e-23  Score=162.33  Aligned_cols=131  Identities=30%  Similarity=0.482  Sum_probs=110.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc--------cCCHHH---HhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------GGSPAE---VIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~--------~~~~~~---~~~~~dvii~~v~~~~~   69 (257)
                      |||||||+|.||.+||++|+++||+|.+|||++++.+++.+.+...        ..+.++   .+..++.++++++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            8999999999999999999999999999999999999998875422        223333   34567788888877655


Q ss_pred             HHH-------------------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHH
Q 025163           70 ALS-------------------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNV  118 (257)
Q Consensus        70 ~~~-------------------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~  118 (257)
                      ...                               .+..+++.|+++|+++++..++.+. .+++||+++.+++++++|+.
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pil~~  160 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEA  160 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHHHHH
Confidence            433                               5567899999999999999999998 78999999999999999999


Q ss_pred             hcCCeE----EeCCCChH
Q 025163          119 IGKKAF----FLGEVGNG  132 (257)
Q Consensus       119 ~~~~~~----~~g~~g~a  132 (257)
                      ++.++.    |+|.+|++
T Consensus       161 ~~~~~~~~~~~~g~~G~G  178 (178)
T d1pgja2         161 AAAKADDGRPCVTMNGSG  178 (178)
T ss_dssp             HSCBCTTSCBSCCCCCST
T ss_pred             HhccccCCCCccCCCCCC
Confidence            999988    89888764

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.88  E-value=3.1e-22  Score=147.42  Aligned_cols=126  Identities=21%  Similarity=0.297  Sum_probs=118.0

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccC-------CcccCCCCCCCcccc
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKG-------PTMLQSNYAPAFPLK  200 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~~~~~~  200 (257)
                      +.|+++.+|+++|++.+.+..++.|++.++++.|+|++.+.++++.+.+.|+.++.+.       ..+..+++.++|++.
T Consensus         1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~   80 (134)
T d3cuma1           1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ   80 (134)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence            3589999999999999999999999999999999999999999999999999987653       347788899999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhh
Q 025163          201 HQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL  253 (257)
Q Consensus       201 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~~  253 (257)
                      .+.||++++.+++++.|+|+|+++.+.++|+.+.++|+|+.|+++|+++|++-
T Consensus        81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~  133 (134)
T d3cuma1          81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT  133 (134)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999998753

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.88  E-value=2.5e-23  Score=157.48  Aligned_cols=124  Identities=27%  Similarity=0.425  Sum_probs=109.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH---------
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS---------   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~---------   72 (257)
                      ||||||+|.||.+||++|.++|+.+ +|+|++++.+++.+.+.....+ .+.+.++|++|+++|++..+..         
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~   79 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAVP-LERVAEARVIFTCLPTTREVYEVAEALYPYL   79 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEECC-GGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCcccc-cccccceeEEEecccchhhhhhhhccccccc
Confidence            8999999999999999999999865 6889989888887765555544 4556789999999999887765         


Q ss_pred             ----------------------HHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 ----------------------AITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 ----------------------~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                                            .++.+|+.|+|+|+++++..+..|++.+++||+++.+++++++|+ ++.+++|+|+
T Consensus        80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L~-~~~~v~~~GP  156 (156)
T d2cvza2          80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFLA-YAKKVVHVGP  156 (156)
T ss_dssp             CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGCT-TEEEEEEEES
T ss_pred             cccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHHH-hcCcCEEeCc
Confidence                                  666789999999999999999999999999999999999999994 9999999985

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.84  E-value=2.8e-21  Score=145.46  Aligned_cols=124  Identities=22%  Similarity=0.295  Sum_probs=102.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--------   72 (257)
                      |||||||+|.||.++|++|.++||+|++|++++++..++...+.....++.|+++++|+||+|||++...+.        
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            999999999999999999999999999999998888887777777788999999999999999999877665        


Q ss_pred             ----------------HHHh--cCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 ----------------AITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 ----------------~~~~--~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                                      .+..  ....|+++|+++++..++.+...++.|++.+.++    .|..+|.++.++|+
T Consensus        81 ~~~~id~st~~p~~~~~l~~~~~~~~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~----~l~~~g~~i~~~G~  150 (152)
T d1i36a2          81 RGIYVDINNISPETVRMASSLIEKGGFVDAAIMGSVRRKGADIRIIASGRDAEEFM----KLNRYGLNIEVRGR  150 (152)
T ss_dssp             CSEEEECSCCCHHHHHHHHHHCSSSEEEEEEECSCHHHHGGGCEEEEESTTHHHHH----GGGGGTCEEEECSS
T ss_pred             CceeeccCcCCHHHHHHHHHHHhccCCCcccccCCcccccCCcEEEEECCCHHHHH----HHHHcCCeeeEcCC
Confidence                            1111  2456999999999888888776555555544433    37788988999886

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.81  E-value=1.4e-19  Score=137.84  Aligned_cols=126  Identities=18%  Similarity=0.268  Sum_probs=93.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||+|||+|.||+.+|+.|.++||+|++|||++++++++.+.|.. ...+..++++++|+||+|||.....+.       
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl~~l~~~   80 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLIPH   80 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHHHHHGGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhhhhhhhh
Confidence            999999999999999999999999999999999999999888753 444556788999999999997754443       


Q ss_pred             -------------------HHHhcCC-----cEEeccccCCccccc----cCcEEEEe---cCChhhHHHHHHHHHHhcC
Q 025163           73 -------------------AITSKGG-----HFLEAPVSGSKQPAE----TGQLVILS---AGEKALYDEAISALNVIGK  121 (257)
Q Consensus        73 -------------------~~~~~g~-----~~~~~pv~~~~~~~~----~~~~~~~~---~g~~~~~~~~~~~l~~~~~  121 (257)
                                         .......     +.+.+|...++..+.    .+...++.   +++++.++.++++++.+|.
T Consensus        81 l~~~~iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~  160 (165)
T d2f1ka2          81 LSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGV  160 (165)
T ss_dssp             SCTTCEEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTC
T ss_pred             cccccceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence                               2222222     222233333333322    23333333   6789999999999999999


Q ss_pred             CeEEe
Q 025163          122 KAFFL  126 (257)
Q Consensus       122 ~~~~~  126 (257)
                      +++++
T Consensus       161 ~v~~c  165 (165)
T d2f1ka2         161 KIYLC  165 (165)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            98764

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=1.4e-20  Score=141.68  Aligned_cols=126  Identities=13%  Similarity=0.033  Sum_probs=96.2

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH----------
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS----------   72 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~----------   72 (257)
                      |||||+|+||.+|+.+|.+.++.+.+|+|++++.+++.+.+.....++.|+++.+|+||+|||++...+.          
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~i~~v~~~l~~~~~i   81 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIKTVANHLNLGDAV   81 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTHHHHHTTTCCSSCC
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchhhhHHHhhhccccee
Confidence            7999999999999999987655567999999999999998777778899999999999999999877665          


Q ss_pred             -----------HH---HhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC
Q 025163           73 -----------AI---TSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus        73 -----------~~---~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                                 .+   ...+.+++..|..++......+...++++||++.++.++++++.+|.+++++++
T Consensus        82 vi~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~  151 (153)
T d2i76a2          82 LVHCSGFLSSEIFKKSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS  151 (153)
T ss_dssp             EEECCSSSCGGGGCSSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred             eeecccchhhhhhhhhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence                       11   112344455555555556666677788899999999999999999999998865

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.75  E-value=7e-18  Score=126.47  Aligned_cols=123  Identities=15%  Similarity=0.232  Sum_probs=92.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      |||||||+|+||++|+++|.++|++|++|+|++++.+++.+. |+..+.+++|+++++|+||+||++....+.       
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~~~~~vl~~l~~~   80 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQLFETVLKPLHFK   80 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGGGHHHHHTTSCCC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchHhHHHHhhhcccc
Confidence            999999999999999999999999999999999999998654 899999999999999999999987655444       


Q ss_pred             -------------HHH---hcCCcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeEEe
Q 025163           73 -------------AIT---SKGGHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        73 -------------~~~---~~g~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                                   .+.   ..+..++. +|..  +.....+...+..+.  +++..+.++++|+.+|. ++++
T Consensus        81 ~~iis~~agi~~~~l~~~l~~~~~ivr~mPN~--~~~v~~g~~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v  150 (152)
T d2ahra2          81 QPIISMAAGISLQRLATFVGQDLPLLRIMPNM--NAQILQSSTALTGNALVSQELQARVRDLTDSFGS-TFDI  150 (152)
T ss_dssp             SCEEECCTTCCHHHHHHHHCTTSCEEEEECCG--GGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTEE-EEEC
T ss_pred             eeEecccccccHHHHHhhhcccccchhhccch--hhhcCccceEEEeCCCCCHHHHHHHHHHHHhCCC-EEEe
Confidence                         222   12333443 3432  222223333233332  58889999999999995 4554

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.63  E-value=4.6e-16  Score=116.45  Aligned_cols=118  Identities=18%  Similarity=0.252  Sum_probs=84.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH------
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS------   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~------   72 (257)
                      |||+|||+|+||.+|+++|.++| ++|.+|||++++++.++++ |+...++.++ ++++|+||+||++....+.      
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavkP~~~~~v~~~l~~   79 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVKPQDMEAACKNIRT   79 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSCHHHHHHHHTTCCC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecCHHHHHHhHHHHhh
Confidence            99999999999999999999887 8999999999999999875 7777777755 5689999999995444333      


Q ss_pred             ---------------HHHh---cCCcEEe-ccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcC
Q 025163           73 ---------------AITS---KGGHFLE-APVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGK  121 (257)
Q Consensus        73 ---------------~~~~---~g~~~~~-~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~  121 (257)
                                     .+..   ....++. .|.  .+.....|...+..+.  +++..+.++++|+.+|.
T Consensus        80 ~~~~viS~~ag~~~~~l~~~l~~~~~iir~mpn--~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~  147 (152)
T d1yqga2          80 NGALVLSVAAGLSVGTLSRYLGGTRRIVRVMPN--TPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGL  147 (152)
T ss_dssp             TTCEEEECCTTCCHHHHHHHTTSCCCEEEEECC--GGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEE
T ss_pred             cccEEeecccCCCHHHHHHHhCcCcceEeeccc--chhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCC
Confidence                           1111   1122222 232  2333444443333333  47778889999999995

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=3e-16  Score=120.70  Aligned_cols=124  Identities=15%  Similarity=0.176  Sum_probs=93.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC--chhHHHHHHCC-------------CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT--LSKCDELVAHG-------------ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~--~~~~~~l~~~g-------------~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.||+++|..|+++||+|++|.|.  ++.++.+++.+             +...++..++++++|+||++||
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            99999999999999999999999999999884  55577776532             2345678889999999999999


Q ss_pred             ChHHHHH--------------------------------HHHh------cCCcEEeccccCCccccccCcEEEEecCChh
Q 025163           66 DPAAALS--------------------------------AITS------KGGHFLEAPVSGSKQPAETGQLVILSAGEKA  107 (257)
Q Consensus        66 ~~~~~~~--------------------------------~~~~------~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~  107 (257)
                      .......                                .+..      ....++.+|.++.....+..+..++.+.+.+
T Consensus        81 s~~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~  160 (180)
T d1txga2          81 TDGVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSES  160 (180)
T ss_dssp             GGGHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHH
T ss_pred             hhhhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHH
Confidence            8766555                                1111      1234567777766666666677778888888


Q ss_pred             hHHHHHHHHHHhcCCeE
Q 025163          108 LYDEAISALNVIGKKAF  124 (257)
Q Consensus       108 ~~~~~~~~l~~~~~~~~  124 (257)
                      ..+.++++|+.-..+++
T Consensus       161 ~a~~i~~~f~~~~frvy  177 (180)
T d1txga2         161 SANKMKEIFETEYFGVE  177 (180)
T ss_dssp             HHHHHHHHHCBTTEEEE
T ss_pred             HHHHHHHHHCCCCEEEE
Confidence            88889988875444443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.63  E-value=2.5e-16  Score=121.93  Aligned_cols=117  Identities=14%  Similarity=0.116  Sum_probs=92.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||+|||+|.||+++|..|+++||+|++|+|+++.++.+++.+              +.+..+++++++++|+||++||+.
T Consensus         9 KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs~   88 (189)
T d1n1ea2           9 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   88 (189)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCHH
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcHH
Confidence            699999999999999999999999999999999999887632              345778899999999999999986


Q ss_pred             HHHHH------------------------------------HHH----hcCCcEEeccccCCccccccCcEEEEecCChh
Q 025163           68 AAALS------------------------------------AIT----SKGGHFLEAPVSGSKQPAETGQLVILSAGEKA  107 (257)
Q Consensus        68 ~~~~~------------------------------------~~~----~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~  107 (257)
                      ...+.                                    .+.    ...+.++.+|.++.....+..+..++.+.+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~  168 (189)
T d1n1ea2          89 FLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADIN  168 (189)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEECSSHH
T ss_pred             HHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEEEeCCHH
Confidence            54332                                    111    12244566777766666666677777778888


Q ss_pred             hHHHHHHHHHH
Q 025163          108 LYDEAISALNV  118 (257)
Q Consensus       108 ~~~~~~~~l~~  118 (257)
                      ..+.++++|+.
T Consensus       169 ~a~~i~~lfst  179 (189)
T d1n1ea2         169 VARRLQRIMST  179 (189)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHhCC
Confidence            88888888874

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.61  E-value=4.2e-15  Score=111.10  Aligned_cols=112  Identities=15%  Similarity=0.269  Sum_probs=86.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH-------
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS-------   72 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------   72 (257)
                      +||+||| +|.||..||++|.++||+|++|||++....+             +.++++|++++|+|.....+.       
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~v~~~~~~~   76 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAE-------------SILANADVVIVSVPINLTLETIERLKPY   76 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHH-------------HHHTTCSEEEECSCGGGHHHHHHHHGGG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccc-------------hhhhhccccccccchhhheeeeeccccc
Confidence            3799999 9999999999999999999999998765433             344566677777665554444       


Q ss_pred             --------------------HHHhcCCcEE-eccccCCccccccCcEEEEe-cCChhhHHHHHHHHHHhcCCeEE
Q 025163           73 --------------------AITSKGGHFL-EAPVSGSKQPAETGQLVILS-AGEKALYDEAISALNVIGKKAFF  125 (257)
Q Consensus        73 --------------------~~~~~g~~~~-~~pv~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~l~~~~~~~~~  125 (257)
                                          ........|+ .+|++++......++..++. +++++.++++.++|+.+|.+++.
T Consensus        77 ~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e  151 (152)
T d2pv7a2          77 LTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ  151 (152)
T ss_dssp             CCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred             ccCCceEEEecccCHHHHHHHHHHccCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence                                2223344565 58999998888788766654 67889999999999999998764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.56  E-value=4.2e-14  Score=107.53  Aligned_cols=125  Identities=21%  Similarity=0.258  Sum_probs=89.9

Q ss_pred             Ce-EEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCc--ccCCHHHHh-hcCceEEEccCChHHHHH--
Q 025163            1 ME-VGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT--VGGSPAEVI-KKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mk-I~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~--~~~~~~~~~-~~~dvii~~v~~~~~~~~--   72 (257)
                      || |+|||+|.||..+|++|.++|+  +|++||++++.++.+.+.|..  ..++..+.. .++|+||+|+|.....+.  
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl~   80 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK   80 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhhh
Confidence            66 9999999999999999999996  689999999999999988753  344554433 579999999997766554  


Q ss_pred             ------------------------HHHh-cCCcEE-eccccCC----cccc----ccCcEEEEec---CChhhHHHHHHH
Q 025163           73 ------------------------AITS-KGGHFL-EAPVSGS----KQPA----ETGQLVILSA---GEKALYDEAISA  115 (257)
Q Consensus        73 ------------------------~~~~-~g~~~~-~~pv~~~----~~~~----~~~~~~~~~~---g~~~~~~~~~~~  115 (257)
                                              .+.. .+-.|+ ..|+.|.    +..+    ..+...++..   .+++.++.++++
T Consensus        81 ~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~  160 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRV  160 (171)
T ss_dssp             HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHH
T ss_pred             hhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHH
Confidence                                    1111 122343 3555543    2222    2455445543   478889999999


Q ss_pred             HHHhcCCeEE
Q 025163          116 LNVIGKKAFF  125 (257)
Q Consensus       116 l~~~~~~~~~  125 (257)
                      ++.+|.++.+
T Consensus       161 ~~~lG~~v~~  170 (171)
T d2g5ca2         161 WEDVGGVVEY  170 (171)
T ss_dssp             HHHTTCEEEE
T ss_pred             HHHcCCEEEe
Confidence            9999998765

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.49  E-value=3.9e-14  Score=110.74  Aligned_cols=67  Identities=16%  Similarity=0.219  Sum_probs=60.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC--------------------CcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------------ATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g--------------------~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|.+|.++|..|+++||+|++||.|+++++.+++..                    ....++..++++++|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            9999999999999999999999999999999999998886431                    24567889999999999


Q ss_pred             EEccCCh
Q 025163           61 IGMLADP   67 (257)
Q Consensus        61 i~~v~~~   67 (257)
                      |+|||++
T Consensus        81 ~i~VpTP   87 (202)
T d1mv8a2          81 FICVGTP   87 (202)
T ss_dssp             EECCCCC
T ss_pred             EEecCcc
Confidence            9999985

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.43  E-value=1.9e-13  Score=104.87  Aligned_cols=72  Identities=21%  Similarity=0.283  Sum_probs=63.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC---------------cccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------------TVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~---------------~~~~~~~~~~~~~dvii~~v~   65 (257)
                      +||+|||+|.||.++|..|+++||+|++|+|++++++.+++.+.               ...+++.|+++++|+||+|||
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~   81 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   81 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEc
Confidence            68999999999999999999999999999999999999887542               335688999999999999999


Q ss_pred             ChHHHHH
Q 025163           66 DPAAALS   72 (257)
Q Consensus        66 ~~~~~~~   72 (257)
                      .......
T Consensus        82 ~~~~~~~   88 (184)
T d1bg6a2          82 AIHHASI   88 (184)
T ss_dssp             GGGHHHH
T ss_pred             hhHHHHH
Confidence            8876543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.1e-12  Score=101.31  Aligned_cols=124  Identities=14%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC------------------CcccCCHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG------------------ATVGGSPAE   52 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g------------------~~~~~~~~~   52 (257)
                      ||+|||+|.||..+|..++.+||+|++||++++.+++..+           .+                  +....+..+
T Consensus         6 kvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~   85 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAAS   85 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHh
Confidence            7999999999999999999999999999999986554322           12                  235668888


Q ss_pred             HhhcCceEEEccCChHHHHH--------------------------HHHh---cCCcEEeccccCCccccccCcEEEEec
Q 025163           53 VIKKCTITIGMLADPAAALS--------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILSA  103 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~~~~~--------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~~  103 (257)
                      +++++|+|+-|+|.+...+.                          .+..   +.-.++..+.+-++.   .-.++-++.
T Consensus        86 a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~~~~p~r~ig~HffnP~~---~~~lVEIv~  162 (192)
T d1f0ya2          86 VVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNPVP---VMKLVEVIK  162 (192)
T ss_dssp             HTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTTSSCGGGEEEEEECSSTT---TCCEEEEEC
T ss_pred             hhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhhccCHhHEEeeccccccC---cccEEEEcC
Confidence            99999999999999887776                          1111   112333333332322   123444554


Q ss_pred             C---ChhhHHHHHHHHHHhcCCeEEeCC
Q 025163          104 G---EKALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus       104 g---~~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      |   +++..+.+.++++.+|+.++.+.+
T Consensus       163 g~~T~~~~i~~~~~~~~~lgk~pV~v~D  190 (192)
T d1f0ya2         163 TPMTSQKTFESLVDFSKALGKHPVSCKD  190 (192)
T ss_dssp             CTTCCHHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEEEeec
Confidence            4   688899999999999998888754

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.29  E-value=3.7e-12  Score=98.14  Aligned_cols=140  Identities=16%  Similarity=0.207  Sum_probs=86.2

Q ss_pred             CeEEEE-cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC-------CcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iI-G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g-------~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|| |+|.||.+||+.|+++||+|++|+|++++++.+.++.       .....+........+....+++.......
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDT   80 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchH
Confidence            999999 8999999999999999999999999999988886641       11222333444445555555554443332


Q ss_pred             ----------------------------------------HHHhc-----CCcEEeccccCCccccccCcEEEEecCChh
Q 025163           73 ----------------------------------------AITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEKA  107 (257)
Q Consensus        73 ----------------------------------------~~~~~-----g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~  107 (257)
                                                              .....     ....+..+....+.. .........+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~  159 (212)
T d1jaya_          81 ARDLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFANLDE-KFDWDVPVCGDDDE  159 (212)
T ss_dssp             HHHTHHHHTTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCEEECCTTCCHHHHHCTTC-CCCEEEEEEESCHH
T ss_pred             HHHhhhhhccccccccccccccccccccccccchhhhhhhhhhhhhcccccceeecHHHhcCccc-ccCccceEEeCCHH
Confidence                                                    00000     111122232222222 22233455666666


Q ss_pred             hHHHHH-HHHHHhcCCeEEeCCCChHHHHHHHHHH
Q 025163          108 LYDEAI-SALNVIGKKAFFLGEVGNGAKMKLVVNM  141 (257)
Q Consensus       108 ~~~~~~-~~l~~~~~~~~~~g~~g~a~~~kl~~n~  141 (257)
                      ....+. .+.+..+.+.++.|.+..+..+|.....
T Consensus       160 a~~~~~~~~~~~~g~~~~~~G~l~~a~~~e~~~~l  194 (212)
T d1jaya_         160 SKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPL  194 (212)
T ss_dssp             HHHHHHHHHHHSTTEEEEEEESGGGHHHHHTHHHH
T ss_pred             HHHHHHHHHhhCCCeEEEEeChHHHHHHHHhHHHH
Confidence            655554 4566778888888888888777755443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.28  E-value=5.6e-12  Score=96.85  Aligned_cols=123  Identities=14%  Similarity=0.199  Sum_probs=86.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhcC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKKC   57 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~-----------~g-------------~~~~~~~~~~~~~~   57 (257)
                      ||+|||+|.||..+|..++.+|++|++||++++.+++..+           .+             +....+.+ .+.++
T Consensus         6 ~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~a   84 (186)
T d1wdka3           6 QAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFGNV   84 (186)
T ss_dssp             SEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGGGC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccccc
Confidence            6999999999999999999999999999999987665422           11             22333443 46799


Q ss_pred             ceEEEccCChHHHHH--------------------------HHHh---cCCcEEeccccCCccccccCcEEEEecC---C
Q 025163           58 TITIGMLADPAAALS--------------------------AITS---KGGHFLEAPVSGSKQPAETGQLVILSAG---E  105 (257)
Q Consensus        58 dvii~~v~~~~~~~~--------------------------~~~~---~g~~~~~~pv~~~~~~~~~~~~~~~~~g---~  105 (257)
                      |+||-|+|.....+.                          .+..   +.-.++..+.+-++...   .++-++.+   +
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~~~~p~r~~g~Hf~nP~~~~---~lVEiv~~~~T~  161 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAKALKRPENFVGMHFFNPVHMM---PLVEVIRGEKSS  161 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGGCSCGGGEEEEECCSSTTTC---CEEEEEECSSCC
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHhccCchheEeeccccCcccC---CeEEECCCCCCC
Confidence            999999999887776                          1111   12234444444333322   23434443   6


Q ss_pred             hhhHHHHHHHHHHhcCCeEEeCC
Q 025163          106 KALYDEAISALNVIGKKAFFLGE  128 (257)
Q Consensus       106 ~~~~~~~~~~l~~~~~~~~~~g~  128 (257)
                      ++.++.+..+++.+|+.++.+.+
T Consensus       162 ~~~~~~~~~~~~~lgk~pv~v~d  184 (186)
T d1wdka3         162 DLAVATTVAYAKKMGKNPIVVND  184 (186)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHHHHHHcCCEEEEEec
Confidence            88899999999999998887754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.4e-12  Score=98.29  Aligned_cols=72  Identities=15%  Similarity=0.244  Sum_probs=58.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC-------cccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~-------~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+|.||+.+|..|+++||+|++|+|++++.+.+...+.       ....+..+....+|+||+|||..+....
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHH
Confidence            99999999999999999999999999999999886654433221       2233455667899999999999876654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.10  E-value=7.4e-11  Score=91.21  Aligned_cols=67  Identities=18%  Similarity=0.165  Sum_probs=55.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC------------------CCcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------GATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~------------------g~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|.+|.++|..|+ .||+|++||.|+++++.+++.                  ......+......++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            99999999999999998775 699999999999999888742                  11234456666788999999


Q ss_pred             ccCChH
Q 025163           63 MLADPA   68 (257)
Q Consensus        63 ~v~~~~   68 (257)
                      |||++.
T Consensus        80 ~vpt~~   85 (196)
T d1dlja2          80 ATPTNY   85 (196)
T ss_dssp             CCCCCE
T ss_pred             cCCccc
Confidence            999773

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.04  E-value=2.5e-11  Score=96.12  Aligned_cols=123  Identities=9%  Similarity=0.025  Sum_probs=90.7

Q ss_pred             EEEEcCCh--hHHHHHH------HHHHCCCeEEEEcCCchhH-HHHHH--------------------------------
Q 025163            3 VGFLGLGI--MGKAISM------NLLRNGFKVTVWNRTLSKC-DELVA--------------------------------   41 (257)
Q Consensus         3 I~iIG~G~--mG~~la~------~L~~~g~~V~~~~r~~~~~-~~l~~--------------------------------   41 (257)
                      +.++|+|.  ||..++.      .|++.|+.|++.|.+++++ +.+.+                                
T Consensus        43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~  122 (242)
T d2b0ja2          43 SITYGAELLHLVPDVKEVIVSDPCFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLV  122 (242)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECGGGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESS
T ss_pred             eeeeeecHHhhhhchhhhhccchhhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcC
Confidence            44566765  7777766      5789999999999997653 22211                                


Q ss_pred             ----CCCcccCCHHHHhhcCceEEEccCChHHHHH-------------------------------HHHhcCCcEEeccc
Q 025163           42 ----HGATVGGSPAEVIKKCTITIGMLADPAAALS-------------------------------AITSKGGHFLEAPV   86 (257)
Q Consensus        42 ----~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~-------------------------------~~~~~g~~~~~~pv   86 (257)
                          .|+++++|+.|+++++|+||+|||.+.....                               .+..+++.|++.+.
T Consensus       123 ~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp  202 (242)
T d2b0ja2         123 HPEDVGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHP  202 (242)
T ss_dssp             CGGGGTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBC
T ss_pred             CHHHCCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECCCc
Confidence                1356778999999999999999998765543                               33346888988776


Q ss_pred             cCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEe
Q 025163           87 SGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFL  126 (257)
Q Consensus        87 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~  126 (257)
                      .+++. .....+....+++++.++++.++|+.+|++++.+
T Consensus       203 ~a~pe-~~g~~li~~~~aseE~iekv~elles~Gk~~~vv  241 (242)
T d2b0ja2         203 GCVPE-MKGQVYIAEGYASEEAVNKLYEIGKIARGKAFKM  241 (242)
T ss_dssp             SSCTT-TCCCEEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred             cCcCc-cccceEEecCCCCHHHHHHHHHHHHHHCCCeEeC
Confidence            65543 3344555666789999999999999999987764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.94  E-value=1.3e-09  Score=82.22  Aligned_cols=85  Identities=22%  Similarity=0.228  Sum_probs=65.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC---------cccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA---------TVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~---------~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      .||.|||+|.||..+|++|.++||+|+++|||.++++.+.+..-         .......+.+...|+++.++|......
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~   82 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHAT   82 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhhH
Confidence            37999999999999999999999999999999999999987521         111233455678899999998776655


Q ss_pred             H--HHHhcCCcEEecc
Q 025163           72 S--AITSKGGHFLEAP   85 (257)
Q Consensus        72 ~--~~~~~g~~~~~~p   85 (257)
                      .  .....+.++++..
T Consensus        83 ~~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          83 VIKSAIRQKKHVVTTS   98 (182)
T ss_dssp             HHHHHHHHTCEEECSS
T ss_pred             HHHHHHhhccceeecc
Confidence            4  4445667776543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.83  E-value=1.7e-08  Score=72.52  Aligned_cols=69  Identities=17%  Similarity=0.293  Sum_probs=56.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcc----cCCHH---HH-hhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV----GGSPA---EV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~----~~~~~---~~-~~~~dvii~~v~~~~~   69 (257)
                      |||.|+|+|.+|..+++.|.+.|++|++.|.|+++++++.+. +..+    .++++   ++ ++++|.++.+++++..
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH
Confidence            999999999999999999999999999999999999998764 5543    22332   22 4689999999888754

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=1e-08  Score=76.60  Aligned_cols=87  Identities=15%  Similarity=0.264  Sum_probs=68.0

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~-V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||||||+|.||.- ....+.+. +.+ +.++|+++++.+.+.+. ++...++.+++.++.|+|++|+|+....+.  .+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~a   81 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTL   81 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhcccccccc
Confidence            69999999999986 56666654 556 45689999998887654 778888999999999999999999887776  44


Q ss_pred             HhcCCc-EEecccc
Q 025163           75 TSKGGH-FLEAPVS   87 (257)
Q Consensus        75 ~~~g~~-~~~~pv~   87 (257)
                      ...|.+ +++-|+.
T Consensus        82 l~~gk~V~~EKPla   95 (164)
T d1tlta1          82 LNAGVHVCVDKPLA   95 (164)
T ss_dssp             HHTTCEEEEESSSC
T ss_pred             ccccceeecccccc
Confidence            456655 5666654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=9.8e-09  Score=73.91  Aligned_cols=72  Identities=18%  Similarity=0.238  Sum_probs=58.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc----cC---CHHHH-hhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GG---SPAEV-IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~----~~---~~~~~-~~~~dvii~~v~~~~~~~~   72 (257)
                      .++.|+|+|.+|..+++.|.+.|++|+++|.|+++++++.+.|...    .+   .+.++ +.++|.+|++++++.....
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~   80 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAST   80 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHH
Confidence            3789999999999999999999999999999999999998876432    11   23333 5789999999998755443

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.78  E-value=3.9e-08  Score=66.56  Aligned_cols=93  Identities=17%  Similarity=0.136  Sum_probs=77.0

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--CchhhhccCCcccCCCCCCCcccchHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI--ANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      ..|++.|++.|.+.+..+.+++|...+|++.|+|.+.+.+++....-  .++.+       +  ...+|+...+..||+.
T Consensus         2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~-------~--~pG~G~GG~ClpKD~~   72 (98)
T d1mv8a1           2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYY-------M--RPGFAFGGSCLPKDVR   72 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTT-------C--SCCSCCCSSSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccc-------c--CCcccCCccccchhHH
Confidence            46899999999999999999999999999999999999999876421  11111       1  0123788999999999


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHH
Q 025163          208 LALALGDENAVSMPIAAAANEAFK  231 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~  231 (257)
                      .+.+.+++.+++.++++++.+.-+
T Consensus        73 al~~~a~~~~~~~~ll~~~~~~N~   96 (98)
T d1mv8a1          73 ALTYRASQLDVEHPMLGSLMRSNS   96 (98)
T ss_dssp             HHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHh
Confidence            999999999999999998877644

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.78  E-value=4.8e-09  Score=77.91  Aligned_cols=67  Identities=27%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +|.|||+|.||..++.+|.+.|. +|++++|+.++.+.+.+. |..  ...+..+.+.++|+||.|++.+.
T Consensus        26 ~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~   96 (159)
T d1gpja2          26 TVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH   96 (159)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence            79999999999999999999997 699999999999888765 543  34467778889999999997653

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.64  E-value=4.7e-08  Score=74.22  Aligned_cols=87  Identities=20%  Similarity=0.318  Sum_probs=67.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-C----CcccCCHHHHhh--cCceEEEccCChHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAH-G----ATVGGSPAEVIK--KCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g----~~~~~~~~~~~~--~~dvii~~v~~~~~~~   71 (257)
                      |||||||+|.||...+..|... +++|+ ++|+++++.+.+.+. +    .+..+|++++++  +.|+|++|+|+....+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~   81 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE   81 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc
Confidence            6899999999999999999876 45755 679999988887653 3    346789999874  5799999999998877


Q ss_pred             H--HHHhcCCc-EEecccc
Q 025163           72 S--AITSKGGH-FLEAPVS   87 (257)
Q Consensus        72 ~--~~~~~g~~-~~~~pv~   87 (257)
                      .  .+...|.+ +++-|+.
T Consensus        82 ~~~~~l~~g~~v~~EKP~~  100 (184)
T d1ydwa1          82 WAIKAAEKGKHILLEKPVA  100 (184)
T ss_dssp             HHHHHHTTTCEEEECSSCS
T ss_pred             hhhhhhhccceeecccccc
Confidence            6  44456766 4566654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.61  E-value=5.9e-08  Score=72.48  Aligned_cols=87  Identities=13%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHC-CCeEEEEcCCchhHHHHHHC-CC-cccCCHHHHhh-cCceEEEccCChHHHHH--H
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRN-GFKVTVWNRTLSKCDELVAH-GA-TVGGSPAEVIK-KCTITIGMLADPAAALS--A   73 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~-g~~V~~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~-~~dvii~~v~~~~~~~~--~   73 (257)
                      |||||||+|.||.. ....|.+. +.++.++|+++++.+.+.+. +. ...+|.+++++ +.|+|++|+|+....+.  .
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~   81 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF   81 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc
Confidence            79999999999976 56666655 45788999999999888764 44 35667777764 67999999999888776  4


Q ss_pred             HHhcCCc-EEecccc
Q 025163           74 ITSKGGH-FLEAPVS   87 (257)
Q Consensus        74 ~~~~g~~-~~~~pv~   87 (257)
                      ....|.+ +++-|+.
T Consensus        82 al~~gk~V~~EKP~~   96 (167)
T d1xeaa1          82 FLHLGIPTFVDKPLA   96 (167)
T ss_dssp             HHHTTCCEEEESCSC
T ss_pred             ccccccccccCCCCc
Confidence            4456665 5666654

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.57  E-value=1.1e-06  Score=59.28  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCchhhhccCCcccCCCCCCCcccchHHHHHHHHH
Q 025163          131 NGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLAL  210 (257)
Q Consensus       131 ~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~  210 (257)
                      .|++.|++.|++.++.+.+++|...+|++.|++...+.+.+....-..+.       .  -+...+|...+..||...++
T Consensus         3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~-------~--~~pg~g~GG~ClpKD~~al~   73 (98)
T d1dlja1           3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMH-------Y--NNPSFGYGGYSLPKDTKQLL   73 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSS-------S--CCCCSSCCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCc-------c--ccCCCCcccccCcccHHHHH
Confidence            57899999999999999999999999999999999998887765322111       1  11234788999999999885


Q ss_pred             HHHhhcCCCchHHHHHHHHHHH
Q 025163          211 ALGDENAVSMPIAAAANEAFKK  232 (257)
Q Consensus       211 ~~a~~~g~~~p~~~~~~~~~~~  232 (257)
                        ....+++.++++++.+.-+.
T Consensus        74 --~~~~~~~~~ll~~~~~~N~~   93 (98)
T d1dlja1          74 --ANYNNIPQTLIEAIVSSNNV   93 (98)
T ss_dssp             --HHHTTSSCSHHHHHHHHHHH
T ss_pred             --HHhcCCCcHHHHHHHHHHHh
Confidence              45668899999998877654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.57  E-value=6.9e-08  Score=73.01  Aligned_cols=63  Identities=22%  Similarity=0.249  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|+|||+|.+|..+++.+..-|.+|.+|||++..      .......+++++++.+|+|++++|....
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~  105 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKH  105 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTT
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhcccccccc
Confidence            47999999999999999999999999999997542      2334567899999999999999997644

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.56  E-value=8.3e-08  Score=73.12  Aligned_cols=69  Identities=14%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|+|||+|.+|..+++.|..-|.+|..||+...........+.....++.|+++.+|+|++++|-...
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~  113 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPE  113 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTT
T ss_pred             cceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhccccccc
Confidence            479999999999999999999999999999976665555666778888999999999999999997654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.56  E-value=6.6e-08  Score=73.85  Aligned_cols=68  Identities=19%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|++|..+|+.+..-|.+|.+||+....- .....+.....+++++++.+|+|++++|-...
T Consensus        50 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~  117 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEH  117 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTT
T ss_pred             ceEEEeccccccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeeccccc
Confidence            379999999999999999999999999999875532 23334677778999999999999999996543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.55  E-value=6.4e-08  Score=70.56  Aligned_cols=67  Identities=13%  Similarity=0.245  Sum_probs=49.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHH----HHH----C--CCcccCCHHHHhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVA----H--GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~----l~~----~--g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      |||+|||+|.+|..+|..|+.+|  .+|.++|+++++.+-    +..    .  ......++++ +++||+|+++...+.
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~~~   84 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGAPQ   84 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC--
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEeccccc
Confidence            79999999999999999999987  589999999876542    221    1  1223445554 589999999876543

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.53  E-value=1.1e-07  Score=72.54  Aligned_cols=69  Identities=12%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      .+|||||+|.+|..+++.+..-|.+|.+||+...........+.....+++++++.+|+|++++|-...
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~  116 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPE  116 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTT
T ss_pred             cceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCch
Confidence            379999999999999999999999999999876655554545556667899999999999999997644

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=3.7e-07  Score=60.37  Aligned_cols=81  Identities=19%  Similarity=0.202  Sum_probs=58.9

Q ss_pred             CeEEEEcCChhHH-HHHHHHHHCCCeEEEEcCCc-hhHHHHHHCCCcccCC-HHHHhhcCceEEEc--cCChHHHHHHHH
Q 025163            1 MEVGFLGLGIMGK-AISMNLLRNGFKVTVWNRTL-SKCDELVAHGATVGGS-PAEVIKKCTITIGM--LADPAAALSAIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG~-~la~~L~~~g~~V~~~~r~~-~~~~~l~~~g~~~~~~-~~~~~~~~dvii~~--v~~~~~~~~~~~   75 (257)
                      |||-|||.|.+|. ++|+.|.++|++|+++|+++ +..++|.+.|+++... ..+-++++|+||..  +|.+...-...+
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsAI~~~npel~~A~   81 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPAVRDDNPEIVRAR   81 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTTCCTTCHHHHHHH
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecCcCCCCHHHHHHH
Confidence            8999999999998 88999999999999999976 4567888999876431 22334688988875  343322222455


Q ss_pred             hcCCcE
Q 025163           76 SKGGHF   81 (257)
Q Consensus        76 ~~g~~~   81 (257)
                      ..|+.+
T Consensus        82 ~~gIpv   87 (89)
T d1j6ua1          82 MERVPI   87 (89)
T ss_dssp             HTTCCE
T ss_pred             HcCCCc
Confidence            566544

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=1.1e-07  Score=68.88  Aligned_cols=65  Identities=18%  Similarity=0.306  Sum_probs=48.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.+|..+|..|+.++  .++.++|+++++++-....         ......+..+.++++|+|+++..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   76 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAG   76 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecc
Confidence            89999999999999999999877  4899999998765432110         12223333456789999999864

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.50  E-value=2.7e-07  Score=68.00  Aligned_cols=71  Identities=25%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      .+|+|||.|+-|.+-|.+|.+.|.+|++--|..+ ..+...+.|..+. +++|+++.+|+|++.+|+....+.
T Consensus        17 k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~-~~~eA~~~aDiim~L~PD~~q~~v   88 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPDEFQGRL   88 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCHHHHHHH
T ss_pred             CEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc-cHHHHhhhcCeeeeecchHHHHHH
Confidence            3799999999999999999999999999887654 4566667787765 899999999999999998766665

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.49  E-value=1.4e-07  Score=68.44  Aligned_cols=65  Identities=14%  Similarity=0.172  Sum_probs=49.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHH----HC------CCcc-cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELV----AH------GATV-GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~----~~------g~~~-~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.+|..++..|+..|  .++.++|+++++.+...    ..      ..+. .++..+.++++|+++++.-
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence            99999999999999999999987  48999999987654321    11      1222 2344566789999999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=2.9e-07  Score=69.53  Aligned_cols=88  Identities=26%  Similarity=0.281  Sum_probs=65.5

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCC--CeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhh--cCceEEEccCChHHHHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNG--FKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIK--KCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g--~~V~-~~~r~~~~~~~l~~~-g~-~~~~~~~~~~~--~~dvii~~v~~~~~~~~   72 (257)
                      +||||||+|.||.. ....+.+.+  ++|+ ++|+++++.+.+.+. +. ...+|++|+++  +.|+|++|+|+....+.
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~   83 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPF   83 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccccccccc
Confidence            37999999999986 467776644  4544 789999999887654 44 46789999885  57999999999887776


Q ss_pred             --HHHhcCCc-EEeccccC
Q 025163           73 --AITSKGGH-FLEAPVSG   88 (257)
Q Consensus        73 --~~~~~g~~-~~~~pv~~   88 (257)
                        .+...|.+ +++-|+..
T Consensus        84 ~~~al~~gk~V~~EKPl~~  102 (181)
T d1zh8a1          84 IEKALRKGVHVICEKPIST  102 (181)
T ss_dssp             HHHHHHTTCEEEEESSSSS
T ss_pred             cccccccchhhhcCCCCcC
Confidence              44556765 45666543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.45  E-value=2.7e-07  Score=70.56  Aligned_cols=66  Identities=20%  Similarity=0.173  Sum_probs=54.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      .+|||||+|.+|..+|+.|..-|.+|.+||+......  ...+. ...+++++++.+|+|++++|....
T Consensus        44 k~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~--~~~~~-~~~~l~~~l~~sDii~~~~plt~~  109 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL--EKKGY-YVDSLDDLYKQADVISLHVPDVPA  109 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHTTC-BCSCHHHHHHHCSEEEECSCCCGG
T ss_pred             CeEEEecccccchhHHHhHhhhcccccccCccccccc--cccee-eeccccccccccccccccCCcccc
Confidence            3799999999999999999999999999998755422  23343 446899999999999999997644

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.36  E-value=4.9e-07  Score=66.35  Aligned_cols=67  Identities=10%  Similarity=0.093  Sum_probs=51.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +||+|||+|.+|..+|..|...+. ++.++|+++++++-...        .+    .....+.+++++++|+|+++...+
T Consensus         8 ~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag~~   87 (154)
T d1pzga1           8 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGLT   87 (154)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecccc
Confidence            489999999999999999888875 89999999876543321        11    123456677889999999987543

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.33  E-value=4.7e-07  Score=65.53  Aligned_cols=64  Identities=19%  Similarity=0.237  Sum_probs=48.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHH----CC----CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA----HG----ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~----~g----~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|.+|..+|..|+..|.  ++.++|+++++.+-    +..    ..    +....+. +.++++|+|+++..
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEecc
Confidence            999999999999999999998774  79999999887432    322    11    1223454 57789999998764

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.31  E-value=5.3e-07  Score=65.75  Aligned_cols=66  Identities=12%  Similarity=0.201  Sum_probs=49.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHH------CCCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA------HGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~------~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||+|||+|.+|..+|..|+..|.  ++.++|+++++++-    +..      .......+..+.+++||+|+++...+
T Consensus         8 KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~~   85 (148)
T d1ldna1           8 RVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (148)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEecccc
Confidence            89999999999999999998875  79999999887432    221      12333334446678999999986543

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=98.31  E-value=4.9e-07  Score=70.48  Aligned_cols=86  Identities=17%  Similarity=0.165  Sum_probs=63.2

Q ss_pred             eEEEEcCChhHH-HHHHHHHHC-CCeEE-EEcCCchhHHHHHHC-CC-----cccCCHHHHhh--cCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGK-AISMNLLRN-GFKVT-VWNRTLSKCDELVAH-GA-----TVGGSPAEVIK--KCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~-~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~-g~-----~~~~~~~~~~~--~~dvii~~v~~~~~~   70 (257)
                      ||||||+|.||. .+...+... +.+|+ ++|+++++.+.+.+. |+     ...+|.+++++  +.|+|++|+|+....
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~  114 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHA  114 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhh
Confidence            799999999997 455666654 55655 789999999888664 44     24578889875  579999999999887


Q ss_pred             HH--HHHhcCCc-EEecccc
Q 025163           71 LS--AITSKGGH-FLEAPVS   87 (257)
Q Consensus        71 ~~--~~~~~g~~-~~~~pv~   87 (257)
                      +.  .....|.+ +++-|+.
T Consensus       115 ~~~~~al~~gk~v~~EKPla  134 (221)
T d1h6da1         115 EFAIRAFKAGKHVMCEKPMA  134 (221)
T ss_dssp             HHHHHHHHTTCEEEECSSCC
T ss_pred             hHHHHhhhcchhhhcCCCcc
Confidence            76  44456665 4555654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=98.29  E-value=1.8e-06  Score=57.89  Aligned_cols=81  Identities=20%  Similarity=0.274  Sum_probs=57.4

Q ss_pred             CeEEEEcCChhH-HHHHHHHHHCCCeEEEEcCC-chhHHHHHHCCCcccC-CHHHHhhcCceEEEc--cCChHHHHHHHH
Q 025163            1 MEVGFLGLGIMG-KAISMNLLRNGFKVTVWNRT-LSKCDELVAHGATVGG-SPAEVIKKCTITIGM--LADPAAALSAIT   75 (257)
Q Consensus         1 mkI~iIG~G~mG-~~la~~L~~~g~~V~~~~r~-~~~~~~l~~~g~~~~~-~~~~~~~~~dvii~~--v~~~~~~~~~~~   75 (257)
                      +||-|||.|.+| +++|+.|.+.|++|+++|++ ....+.+.+.|+.+.. ...+-+.+.|+||..  +|.+...-...+
T Consensus         9 ~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI~~~npel~~A~   88 (96)
T d1p3da1           9 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTSK   88 (96)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTCHHHHHHH
T ss_pred             CEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCcCCCCHHHHHHH
Confidence            479999999999 77899999999999999986 4456778888886543 222335788988875  343322222455


Q ss_pred             hcCCcE
Q 025163           76 SKGGHF   81 (257)
Q Consensus        76 ~~g~~~   81 (257)
                      .+|+..
T Consensus        89 ~~gipi   94 (96)
T d1p3da1          89 QKRIPV   94 (96)
T ss_dssp             HTTCCE
T ss_pred             HcCCCE
Confidence            566554

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.1e-06  Score=62.95  Aligned_cols=67  Identities=16%  Similarity=0.090  Sum_probs=57.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      +++|+|.|.+|..+|+.+...|.+|++++++|-+.-+..-.|..+. +.++++..+|++++|+.....
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~v   92 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDI   92 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCS
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccc
Confidence            6899999999999999999999999999999877655555676655 788999999999999886543

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.27  E-value=1.4e-06  Score=65.77  Aligned_cols=68  Identities=18%  Similarity=0.287  Sum_probs=55.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ++++|||.|.+|..+++.+..-|.+|.+||+...... ....+... .+.+|+++.||+|++++|-....
T Consensus        45 k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~-~~~~~~~~-~~l~ell~~sDiv~~~~Plt~~T  112 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQLGIEL-LSLDDLLARADFISVHLPKTPET  112 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH-HHHHTCEE-CCHHHHHHHCSEEEECCCCSTTT
T ss_pred             eeeeeccccchhHHHHHHhhhccceEEeecCCCChhH-HhhcCcee-ccHHHHHhhCCEEEEcCCCCchh
Confidence            3799999999999999999999999999998765433 23335543 48999999999999999976543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=98.27  E-value=8.2e-07  Score=68.00  Aligned_cols=66  Identities=20%  Similarity=0.159  Sum_probs=53.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ++|||||+|.+|..+|+.|..-|.+|.+||+.+....    .......+++++.+.+|+|++++|.....
T Consensus        46 ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~T  111 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQN  111 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGGG
T ss_pred             eeeeeeecccccccccccccccceeeeccCCccchhh----hcchhHHHHHHHHHhcccceeeecccccc
Confidence            4799999999999999999999999999998755311    11123458999999999999999976543

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.26  E-value=1.4e-06  Score=65.10  Aligned_cols=70  Identities=17%  Similarity=0.241  Sum_probs=51.6

Q ss_pred             CeEEEEcCChhHHHHH--HHHHHC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAIS--MNLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la--~~L~~~----g~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+|++|.+++  ..|+..    +.++.++|+++++++....        .+    +...+|..|+++++|+|+.
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~   82 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVIN   82 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEee
Confidence            8999999999997643  334432    4599999999988654221        12    3456789999999999999


Q ss_pred             ccCChHHH
Q 025163           63 MLADPAAA   70 (257)
Q Consensus        63 ~v~~~~~~   70 (257)
                      +...+...
T Consensus        83 ~~~~g~~~   90 (171)
T d1obba1          83 TAMVGGHT   90 (171)
T ss_dssp             CCCTTHHH
T ss_pred             eccccccc
Confidence            98765443

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.26  E-value=7.9e-07  Score=67.51  Aligned_cols=65  Identities=12%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++|||||+|.+|..+|+.+..-|.+|.+||+......    .......+++|+++.+|+|++++|-...
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~  109 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPS  109 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTT
T ss_pred             eEEEEeecccchhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcc
Confidence            4799999999999999999999999999998644211    2334456899999999999999996644

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=98.25  E-value=5.5e-07  Score=67.27  Aligned_cols=80  Identities=8%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC-CCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN-GFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~-g~~-V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      |||+|||+|.||...+..|.+. +.+ |.+++++++...   ..+.....+..+...+.|+|++|+|+....+.  ....
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~~aL~   80 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQAPKFA   80 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHHHHT
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHHHHHHH
Confidence            4799999999999999999876 456 446788866422   22444555666777899999999999877665  4456


Q ss_pred             cCCcEEe
Q 025163           77 KGGHFLE   83 (257)
Q Consensus        77 ~g~~~~~   83 (257)
                      .|.+++.
T Consensus        81 aG~~vv~   87 (170)
T d1f06a1          81 QFACTVD   87 (170)
T ss_dssp             TTSEEEC
T ss_pred             CCCcEEE
Confidence            7777653

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.23  E-value=1.1e-06  Score=63.71  Aligned_cols=67  Identities=16%  Similarity=0.306  Sum_probs=48.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHH----CC--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVA----HG--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~----~g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .||+|||+|.+|..+|..|+..|.  ++.++|+++++++.    +.+    .+  .....+..+.+++||+|+++...+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~   80 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI   80 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence            489999999999999999998774  89999999887532    222    11  122223334568999999987644

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=6.1e-07  Score=68.92  Aligned_cols=66  Identities=20%  Similarity=0.257  Sum_probs=52.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~~   66 (257)
                      +||.|+| .|.+|..++..|+++||+|+++.|+++++......++..       ..++.++++++|+||.|+..
T Consensus         4 kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            3799998 599999999999999999999999999876555455432       12445677889999988753

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.16  E-value=2.8e-06  Score=64.91  Aligned_cols=81  Identities=16%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHHHHHhcCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSAITSKGG   79 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~~~~~~g~   79 (257)
                      .+|+|.|+|++|..+|+.|.+.|..|+++|.+++++......|.... +++++. .+||+++-|--.....+.....-..
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~-~~~~~~~~~~DI~iPcA~~~~I~~~~a~~i~a  106 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCAMGGVITTEVARTLDC  106 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECSCSCCBCHHHHHHCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhccccc-CccccccccceeeecccccccccHHHHhhhhh
Confidence            37999999999999999999999999999999999999888887766 455555 4899999876544333333333344


Q ss_pred             cEE
Q 025163           80 HFL   82 (257)
Q Consensus        80 ~~~   82 (257)
                      .++
T Consensus       107 k~i  109 (201)
T d1c1da1         107 SVV  109 (201)
T ss_dssp             SEE
T ss_pred             hee
Confidence            443

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.14  E-value=3.4e-06  Score=61.38  Aligned_cols=66  Identities=11%  Similarity=0.210  Sum_probs=48.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC--------CC--cc-cCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GA--TV-GGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~--------g~--~~-~~~~~~~~~~~dvii~~v~~   66 (257)
                      +||+|||+|.+|..+|..|...+. ++.++|+++++.+-....        +.  .. ..+..+.++++|+|+++...
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~   81 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF   81 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence            599999999999999998887774 799999998765433211        11  11 22444667899999998653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.14  E-value=2.6e-06  Score=61.50  Aligned_cols=67  Identities=10%  Similarity=0.154  Sum_probs=49.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHH----HHC------C--CcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDEL----VAH------G--ATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l----~~~------g--~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .||+|||+|.+|.++|..|+.++. ++.++|+++++.+..    ...      .  +..+.+.++ ++++|+|+++...+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~   80 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence            489999999999999999998775 899999988764432    111      1  223445554 57999999998655


Q ss_pred             H
Q 025163           68 A   68 (257)
Q Consensus        68 ~   68 (257)
                      .
T Consensus        81 ~   81 (142)
T d1uxja1          81 R   81 (142)
T ss_dssp             -
T ss_pred             C
Confidence            3

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.13  E-value=2.6e-06  Score=62.62  Aligned_cols=66  Identities=15%  Similarity=0.232  Sum_probs=48.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC----CC--cccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH----GA--TVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~----g~--~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      .||+|||+|.+|..+|..|...|.  ++.++|+++++.+    ++...    +.  .......+.++++|+|+++...
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~   98 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGV   98 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCC
Confidence            389999999999999999999986  8999999987653    33331    11  1122333556899999987653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.13  E-value=2.9e-06  Score=56.58  Aligned_cols=80  Identities=21%  Similarity=0.263  Sum_probs=53.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch--hHHHHHHCCCcc--cCCHHHHhhcCceEEEcc--CChHHHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATV--GGSPAEVIKKCTITIGML--ADPAAALSAI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~--~~~~l~~~g~~~--~~~~~~~~~~~dvii~~v--~~~~~~~~~~   74 (257)
                      .||.|+|+|..|.+.|+.|.+.|++|++||.++.  ..+.+.+ +...  .....+...+.|+||+.-  |.....-..+
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~vi~SPGi~~~~~~~~~a   84 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPE-AVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAA   84 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCT-TSCEEESBCCHHHHHHCSEEEECTTSCTTSHHHHHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhh-ccceeecccchhhhccCCEEEECCCCCCCCHHHHHH
Confidence            3799999999999999999999999999988543  2333332 3322  122345567889999863  3333322245


Q ss_pred             HhcCCcE
Q 025163           75 TSKGGHF   81 (257)
Q Consensus        75 ~~~g~~~   81 (257)
                      ..+|+..
T Consensus        85 ~~~gi~i   91 (93)
T d2jfga1          85 ADAGIEI   91 (93)
T ss_dssp             HHTTCEE
T ss_pred             HHcCCCe
Confidence            5666554

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.13  E-value=1.6e-06  Score=64.11  Aligned_cols=69  Identities=12%  Similarity=0.037  Sum_probs=50.9

Q ss_pred             CeEEEEcCChhHHHHHHHH-HH-C----CCeEEEEcCCchhHHHHHHC---------CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNL-LR-N----GFKVTVWNRTLSKCDELVAH---------GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L-~~-~----g~~V~~~~r~~~~~~~l~~~---------g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+|+.|.+.+... +. .    ..++.++|+++++.+...+.         .....++..++++++|+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            9999999999998877442 22 1    35899999999987644321         13456678889999999999876


Q ss_pred             ChHH
Q 025163           66 DPAA   69 (257)
Q Consensus        66 ~~~~   69 (257)
                      .+..
T Consensus        81 ~~~~   84 (162)
T d1up7a1          81 PGGL   84 (162)
T ss_dssp             TTHH
T ss_pred             cCCC
Confidence            5543

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.12  E-value=3.7e-06  Score=60.80  Aligned_cols=65  Identities=22%  Similarity=0.379  Sum_probs=46.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCch--hHH----HHHHC------CCcc---cCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLS--KCD----ELVAH------GATV---GGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~--~~~----~l~~~------g~~~---~~~~~~~~~~~dvii~   62 (257)
                      |||+|||+ |.+|..+|..|+..|.  ++.++|++++  +++    ++...      ..+.   .++..+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            99999995 9999999999999884  8999999763  222    23321      1111   1233457789999999


Q ss_pred             ccC
Q 025163           63 MLA   65 (257)
Q Consensus        63 ~v~   65 (257)
                      +..
T Consensus        81 tAG   83 (145)
T d1hyea1          81 TSG   83 (145)
T ss_dssp             CCS
T ss_pred             ecc
Confidence            853

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.11  E-value=1.9e-06  Score=62.19  Aligned_cols=67  Identities=10%  Similarity=0.198  Sum_probs=45.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC-----CCcccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH-----GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      .||+|||+|.+|..+|..|..++.  ++.++|+++++++    +|...     .........+.++++|+|+++...+
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccc
Confidence            489999999999999999999885  8999999887642    33321     1112222334568999999986433

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.09  E-value=3e-06  Score=61.17  Aligned_cols=63  Identities=10%  Similarity=0.295  Sum_probs=47.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHHH----HHHC----C---CcccCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH----G---ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~----l~~~----g---~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      ||+|||+|.+|..+|..|..+|.  ++.++|+++++++-    +...    +   +....+. +.++++|+|+++.-
T Consensus         3 Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG   78 (143)
T d1llda1           3 KLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAG   78 (143)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEecc
Confidence            89999999999999999999885  89999999876542    3331    1   1223344 45789999999864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.08  E-value=3.9e-06  Score=60.64  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=48.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCC---------CcccCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHG---------ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g---------~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      ||+|||+ |.+|..+|..|...|.  ++.++|.++.+.+.+--..         .....+..++++++|+|+++..
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag   77 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence            8999995 9999999999998885  7999999877654432221         1123456678899999998754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3.1e-06  Score=62.13  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=48.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCchhHH----HHHHC----CC---cccCCHHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCD----ELVAH----GA---TVGGSPAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~----~l~~~----g~---~~~~~~~~~~~~~dvii~~v~~   66 (257)
                      +||+|||+|.+|..+|..|...|.  ++.++|+++++++    +|...    +.   ....+. +.++++|+|+++...
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvitag~   97 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITAGA   97 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEeccc
Confidence            489999999999999999999885  8999999987653    34432    11   123354 445899999987643

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.02  E-value=9.5e-06  Score=61.70  Aligned_cols=71  Identities=24%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC------CeEEEEcC-CchhHHHHHHCCCcc----cCCHHHHhhcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG------FKVTVWNR-TLSKCDELVAHGATV----GGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g------~~V~~~~r-~~~~~~~l~~~g~~~----~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      ||+|||.|+-|.+-|.+|.+.|      .+|++-=| +....++..+.|..+    ..+++|+++.+|+|++.+|+..+.
T Consensus        46 kIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~  125 (226)
T d1qmga2          46 QIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQA  125 (226)
T ss_dssp             EEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHH
T ss_pred             EEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHH
Confidence            6999999999999999999954      56776644 345667777788763    447899999999999999988776


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      +.
T Consensus       126 ~v  127 (226)
T d1qmga2         126 DN  127 (226)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=98.01  E-value=1.9e-05  Score=57.73  Aligned_cols=85  Identities=12%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             CeEEEEcCChhHHH-HHHHHHHCC-CeEEE-EcCCchh--HHHHHHCCCcccCC-HHHHh-----hcCceEEEccCChHH
Q 025163            1 MEVGFLGLGIMGKA-ISMNLLRNG-FKVTV-WNRTLSK--CDELVAHGATVGGS-PAEVI-----KKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~G~mG~~-la~~L~~~g-~~V~~-~~r~~~~--~~~l~~~g~~~~~~-~~~~~-----~~~dvii~~v~~~~~   69 (257)
                      +||||||+|.+|.. +...|.+.. .++.. .+|+++.  .+...+.|+....+ .++..     .+.|+||+|+|....
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            47999999999986 556665554 35544 5888653  33445567766554 33332     368999999998877


Q ss_pred             HHH----HHHhcCCcEEecc
Q 025163           70 ALS----AITSKGGHFLEAP   85 (257)
Q Consensus        70 ~~~----~~~~~g~~~~~~p   85 (257)
                      .+.    ...+.|...+|..
T Consensus        85 ~~~~~~~~aa~~G~~VID~s  104 (157)
T d1nvmb1          85 VQNEALLRQAKPGIRLIDLT  104 (157)
T ss_dssp             HHHHHHHHHHCTTCEEEECS
T ss_pred             HHhHHHHHHHHcCCEEEEcc
Confidence            664    3356788888843

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=98.00  E-value=5.2e-06  Score=61.56  Aligned_cols=64  Identities=23%  Similarity=0.281  Sum_probs=51.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      ||.|||+|.++.+++..|.+.|. +|++++|++++.+.+.+. +.....+..  ..++|+||=|+|-+
T Consensus        19 ~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiG   84 (167)
T d1npya1          19 KVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG   84 (167)
T ss_dssp             CEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccC
Confidence            69999999999999999999996 799999999999988764 433332222  24789999999843

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=8.2e-06  Score=60.62  Aligned_cols=68  Identities=24%  Similarity=0.289  Sum_probs=53.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC----CCcccCCHHH-HhhcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAE-VIKKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~----g~~~~~~~~~-~~~~~dvii~~v~~~~   68 (257)
                      ++|.|||+|..+.+++..|.+.|.+|++++|+.++.+.+.+.    +.....+..+ ....+|+||-|+|..-
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~   91 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI   91 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCc
Confidence            378999999999999999999999999999999999888763    2111122222 2357899999999873

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.98  E-value=1.3e-05  Score=58.43  Aligned_cols=67  Identities=19%  Similarity=0.151  Sum_probs=58.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      ++.|+|.|..|..+|+++...|.+|++++++|-+.-+..-.|..+ .+.+|+++.+|++|+++.....
T Consensus        25 ~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~v   91 (163)
T d1v8ba1          25 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVDV   91 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSSS
T ss_pred             EEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCcc
Confidence            689999999999999999999999999999997665555568776 4889999999999999987654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.94  E-value=7.1e-06  Score=67.29  Aligned_cols=66  Identities=20%  Similarity=0.307  Sum_probs=56.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHH----CCCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVA----HGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~----~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|..+......|... . .+|.+|+|++++.+.+.+    .+..+..++.+++.++|+|++|+++.
T Consensus       127 ~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~  198 (320)
T d1omoa_         127 VFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR  198 (320)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS
T ss_pred             EEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc
Confidence            589999999999999998753 3 479999999999877654    46777778889999999999999865

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=9.1e-06  Score=58.69  Aligned_cols=65  Identities=17%  Similarity=0.257  Sum_probs=44.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHH-C--CCeEEEEcCCchhH---HHHHHCCC------cccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLR-N--GFKVTVWNRTLSKC---DELVAHGA------TVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~-~--g~~V~~~~r~~~~~---~~l~~~g~------~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+||| +|.+|..+|..|.. .  ..++.++|+.+...   .++.....      ....+..+.++++|+||++--
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG   78 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAG   78 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCC
Confidence            9999999 59999999998864 3  36899999864321   23333211      112334456789999999854

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=97.89  E-value=5.6e-06  Score=61.64  Aligned_cols=67  Identities=22%  Similarity=0.248  Sum_probs=51.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.++.+++..|.+.+.+|++++|+.++++.+.+.     .+...........++|+||-|+|...
T Consensus        20 ~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~   91 (171)
T d1p77a1          20 HVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL   91 (171)
T ss_dssp             EEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred             EEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeecccccc
Confidence            68999999999999999999888999999999999988663     11222111223468899999999764

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.88  E-value=1.7e-05  Score=62.07  Aligned_cols=87  Identities=16%  Similarity=0.191  Sum_probs=60.1

Q ss_pred             CeEEEEcCChhHHH----HHHHHHHC--CCeEE-EEcCCchhHHHHHHC-CC---cccCCHHHHhh--cCceEEEccCCh
Q 025163            1 MEVGFLGLGIMGKA----ISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GA---TVGGSPAEVIK--KCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~G~mG~~----la~~L~~~--g~~V~-~~~r~~~~~~~l~~~-g~---~~~~~~~~~~~--~~dvii~~v~~~   67 (257)
                      +||||||+|.+|..    ....+.+.  +++|+ ++|+++++.+.+.+. +.   ...++++++++  +.|+|++|+|+.
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            48999999986543    34445543  46755 789999998877653 43   45679999875  578999999988


Q ss_pred             HHHHH--HHHhcCC-------cEEecccc
Q 025163           68 AAALS--AITSKGG-------HFLEAPVS   87 (257)
Q Consensus        68 ~~~~~--~~~~~g~-------~~~~~pv~   87 (257)
                      ...+.  .....|.       .+++-|+.
T Consensus        97 ~h~~~~~~al~aG~~~~~~k~V~~EKPla  125 (237)
T d2nvwa1          97 EHYEVVKNILEHSSQNLNLRYLYVEWALA  125 (237)
T ss_dssp             HHHHHHHHHHHHSSSCSSCCEEEEESSSS
T ss_pred             chhhHHHHHHHhcccccCCceEEEecccc
Confidence            88776  2333442       46666654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.83  E-value=1.4e-05  Score=65.84  Aligned_cols=66  Identities=20%  Similarity=0.331  Sum_probs=54.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHC-C-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~-g-~~V~~~~r~~~~~~~l~~~-----g~--~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +++|||+|..+...+..+.+. + .+|.+|+|++++.+++.+.     |+  ..+.|++++++++|+|++|+++.
T Consensus       130 ~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~  204 (340)
T d1x7da_         130 KMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK  204 (340)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS
T ss_pred             eEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC
Confidence            589999999999998888653 3 4799999999988877542     44  45889999999999999999754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00016  Score=53.22  Aligned_cols=71  Identities=23%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcc-----cCCHHHHh--------hcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV-----GGSPAEVI--------KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~--------~~~dvii~~v~~~   67 (257)
                      +|.|+|+|.+|...+..+...|. +|++.|+++++++..++.|+..     ..++.+..        ..+|++|-|+..+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~  108 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAE  108 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCH
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCc
Confidence            58899999999999999999998 7999999999999988888643     22443332        2589999999998


Q ss_pred             HHHHH
Q 025163           68 AAALS   72 (257)
Q Consensus        68 ~~~~~   72 (257)
                      ...+.
T Consensus       109 ~~~~~  113 (171)
T d1pl8a2         109 ASIQA  113 (171)
T ss_dssp             HHHHH
T ss_pred             hhHHH
Confidence            77665

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.77  E-value=0.00018  Score=53.50  Aligned_cols=71  Identities=20%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHh---------hcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVI---------KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~---------~~~dvii~~v~~   66 (257)
                      +|.|+|+|.+|...++.+...|. +|++.++++++++.+++.|+..+     .+..+..         ...|+||-|+..
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid~vG~  110 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGD  110 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             EEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEeecCCc
Confidence            58899999999999999999997 79999999999999998886422     2333321         248999999987


Q ss_pred             hHHHHH
Q 025163           67 PAAALS   72 (257)
Q Consensus        67 ~~~~~~   72 (257)
                      +...+.
T Consensus       111 ~~~~~~  116 (182)
T d1vj0a2         111 SRALLE  116 (182)
T ss_dssp             TTHHHH
T ss_pred             hhHHHH
Confidence            766554

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.75  E-value=1.8e-05  Score=58.40  Aligned_cols=69  Identities=12%  Similarity=0.132  Sum_probs=48.8

Q ss_pred             CeEEEEcCChhHHHHH-HHHHH-C-C---CeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhcCceEEE
Q 025163            1 MEVGFLGLGIMGKAIS-MNLLR-N-G---FKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG   62 (257)
Q Consensus         1 mkI~iIG~G~mG~~la-~~L~~-~-g---~~V~~~~r~~~~~~~l~~--------~g----~~~~~~~~~~~~~~dvii~   62 (257)
                      +||+|||+|+.|...+ ..+.. . .   .+|.++|+++++++....        .+    +...++..|+++++|+||+
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            4899999999987633 23332 2 2   389999999998763222        12    3456788999999999999


Q ss_pred             ccCChHH
Q 025163           63 MLADPAA   69 (257)
Q Consensus        63 ~v~~~~~   69 (257)
                      +.-.+..
T Consensus        84 tag~~~~   90 (167)
T d1u8xx1          84 HIRVGKY   90 (167)
T ss_dssp             CCCTTHH
T ss_pred             CCCcCCC
Confidence            9865433

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.73  E-value=3e-05  Score=56.84  Aligned_cols=64  Identities=16%  Similarity=0.258  Sum_probs=53.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC---Ccc----cCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---ATV----GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g---~~~----~~~~~~~~~~~dvii~~v~   65 (257)
                      |+.|||+|..|..-++...+.|.+|+++|+++++++++....   ...    ...+++.++++|+||.++-
T Consensus        34 ~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aal  104 (168)
T d1pjca1          34 KVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVL  104 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             EEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeee
Confidence            789999999999999999999999999999999998887642   221    1135677889999999874

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.72  E-value=8.5e-05  Score=55.11  Aligned_cols=44  Identities=18%  Similarity=0.219  Sum_probs=40.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT   45 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~   45 (257)
                      |+.|||+|..|..-++....-|.+|+++|+++++++++.+.+.+
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~   74 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK   74 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE
T ss_pred             EEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc
Confidence            78999999999999999999999999999999999999987643

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.71  E-value=0.00022  Score=52.38  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=61.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-------CCHHHH---h-----hcCceEEEccCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-------GSPAEV---I-----KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~---~-----~~~dvii~~v~~   66 (257)
                      ++.|+|+|.+|...++.+...|.+|+++++++++++.+++.|....       .+..+.   +     ..+|++|-|+..
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~  108 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGN  108 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCC
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCC
Confidence            5889999999999999999999999999999999999988876421       122222   1     248999999998


Q ss_pred             hHHHHH--HHHhcCCcEEe
Q 025163           67 PAAALS--AITSKGGHFLE   83 (257)
Q Consensus        67 ~~~~~~--~~~~~g~~~~~   83 (257)
                      +...+.  .+...+..++-
T Consensus       109 ~~~~~~a~~~~~~~G~iv~  127 (170)
T d1e3ja2         109 EKCITIGINITRTGGTLML  127 (170)
T ss_dssp             HHHHHHHHHHSCTTCEEEE
T ss_pred             hHHHHHHHHHHhcCCceEE
Confidence            876665  23334444443

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.62  E-value=2.8e-06  Score=63.33  Aligned_cols=86  Identities=14%  Similarity=0.115  Sum_probs=55.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHH--HH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~--~~   74 (257)
                      |||+|||+|.||...+..|.+..  ..+.+++....+  ...........|.+|+++  +.|+|++|+|+....+.  ..
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~H~~~~~~a   85 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSESSSHEDYIRQF   85 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHHHHHHH
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccccccccccccc
Confidence            48999999999999998887543  234444432221  111112233457888875  56999999999988776  34


Q ss_pred             HhcCCc-EEeccccC
Q 025163           75 TSKGGH-FLEAPVSG   88 (257)
Q Consensus        75 ~~~g~~-~~~~pv~~   88 (257)
                      ...|.+ +++-|+..
T Consensus        86 l~~gk~V~~EKP~a~  100 (172)
T d1lc0a1          86 LQAGKHVLVEYPMTL  100 (172)
T ss_dssp             HHTTCEEEEESCSCS
T ss_pred             cccchhhhcCCCccc
Confidence            455655 56677643

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.57  E-value=8.1e-05  Score=54.99  Aligned_cols=69  Identities=7%  Similarity=-0.009  Sum_probs=47.1

Q ss_pred             CeEEEEcCChhHH--HHHHHHHHCC----CeEEEEcCCchh--HHHHH--------HCCC----cccCCHHHHhhcCceE
Q 025163            1 MEVGFLGLGIMGK--AISMNLLRNG----FKVTVWNRTLSK--CDELV--------AHGA----TVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~G~mG~--~la~~L~~~g----~~V~~~~r~~~~--~~~l~--------~~g~----~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+|+.|.  .++..+....    -++.++|+++++  .+.+-        +.+.    ...+|..++++++|+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            7999999998774  4444444321    389999998754  33221        1222    3456888889999999


Q ss_pred             EEccCChHH
Q 025163           61 IGMLADPAA   69 (257)
Q Consensus        61 i~~v~~~~~   69 (257)
                      +++...+..
T Consensus        82 v~ta~~~~~   90 (169)
T d1s6ya1          82 TTQFRVGGL   90 (169)
T ss_dssp             EECCCTTHH
T ss_pred             EEccccCCC
Confidence            999876644

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.57  E-value=9e-05  Score=53.02  Aligned_cols=64  Identities=14%  Similarity=0.153  Sum_probs=44.0

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCC--eEEEEcCCc--hhH----HHHHH---C--CCcc-cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGF--KVTVWNRTL--SKC----DELVA---H--GATV-GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~--~V~~~~r~~--~~~----~~l~~---~--g~~~-~~~~~~~~~~~dvii~~v~   65 (257)
                      .||+||| +|.+|..+|..|..++.  ++.++|++.  ++.    .++..   .  ..++ ..+++ .++++|+|+++.-
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~-~~~~aDiVvitaG   79 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE-DTAGSDVVVITAG   79 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG-GGTTCSEEEECCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH-HhhhcCEEEEecc
Confidence            4899999 69999999999999885  799999743  222    23332   1  1222 23444 4579999998753

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.56  E-value=7.5e-05  Score=59.98  Aligned_cols=98  Identities=16%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHh---hcCCCchhhhccCCcccCCCCCCCcccch----
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEK-SGLDPRTLLDVLD---LGGIANPMFKGKGPTMLQSNYAPAFPLKH----  201 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~-~g~~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~----  201 (257)
                      |+|+.+||++|.+.+.++++++|++.++++ .|.+.+++.++..   .+...|++++.....+..+|.....-++.    
T Consensus         1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~ld~I~d~   80 (297)
T d2pgda1           1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLLPKIRDS   80 (297)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSGGGSCCC
T ss_pred             CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcchhhhhcc
Confidence            789999999999999999999999999987 5888888877765   45555666653322222222111110110    


Q ss_pred             --HHHHHHHHHHHHhhcCCCchHHHHHH
Q 025163          202 --QQKDMRLALALGDENAVSMPIAAAAN  227 (257)
Q Consensus       202 --~~kd~~~~~~~a~~~g~~~p~~~~~~  227 (257)
                        ....-....+.|-+.|+|+|++..++
T Consensus        81 a~~kGTG~Wt~~~Al~lgvp~p~I~~Av  108 (297)
T d2pgda1          81 AGQKGTGKWTAISALEYGVPVTLIGEAV  108 (297)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHcCCCchHHHHHH
Confidence              01123567888889999999987754

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=9.9e-05  Score=50.91  Aligned_cols=74  Identities=19%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +|+|||+    +..|..+.++|.+.||+|..++.+.+.+     .|.+...|+.|+-...|++++++|.....+.  .+.
T Consensus         3 sIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp~~~~~~~l~~~~   77 (116)
T d1y81a1           3 KIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAV   77 (116)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeCHHHHHHHHHHHH
Confidence            6999994    7899999999999999998888765443     3788888999888889999999998766655  333


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        78 ~~g~k   82 (116)
T d1y81a1          78 EAGFK   82 (116)
T ss_dssp             HTTCC
T ss_pred             hcCCc
Confidence            44544

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.56  E-value=3.2e-05  Score=55.64  Aligned_cols=85  Identities=14%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC---eEEEEcCCchhHHHHHHCC--CcccCCHHHHhhcCceEEEccCChHHHHH--
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALS--   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~--   72 (257)
                      |||+|||+ |+.|..+.+.|.+++|   ++..+..+...-+.+...+  ........+...++|++|+|+|.....+.  
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~s~~~~~   82 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAEVSRAHAE   82 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcchhhhhcc
Confidence            89999988 9999999999987765   5666533322211111111  11111122345789999999998766654  


Q ss_pred             HHHhcCCcEEecc
Q 025163           73 AITSKGGHFLEAP   85 (257)
Q Consensus        73 ~~~~~g~~~~~~p   85 (257)
                      .+...|..++|..
T Consensus        83 ~~~~~g~~VID~S   95 (144)
T d2hjsa1          83 RARAAGCSVIDLS   95 (144)
T ss_dssp             HHHHTTCEEEETT
T ss_pred             ccccCCceEEeec
Confidence            5667888888844

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.55  E-value=3.3e-05  Score=56.27  Aligned_cols=64  Identities=13%  Similarity=0.254  Sum_probs=44.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEE--cCCchhHHHHHH---C-------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDELVA---H-------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~--~r~~~~~~~l~~---~-------g~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+ |.+|..++..|+..+.       ...++  +++.++.+.+..   .       +....++..++++++|+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            69999996 9999999999997653       12333  444444443321   1       234566778889999999


Q ss_pred             EEcc
Q 025163           61 IGML   64 (257)
Q Consensus        61 i~~v   64 (257)
                      +++-
T Consensus        85 iita   88 (154)
T d1y7ta1          85 LLVG   88 (154)
T ss_dssp             EECC
T ss_pred             Eeec
Confidence            9986

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.51  E-value=0.00054  Score=50.74  Aligned_cols=81  Identities=16%  Similarity=0.220  Sum_probs=56.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEE-cCCchhHH-HHH-----------------HCCCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVW-NRTLSKCD-ELV-----------------AHGATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~-~r~~~~~~-~l~-----------------~~g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|.|.|++|..+.+.+.+++ .+|+.+ |+++.... .+.                 +.++.+..+..++..++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            8999999999999999999875 565554 55544322 222                 224455567777778999999


Q ss_pred             EccCChHHHHH--HHHhcCCcEE
Q 025163           62 GMLADPAAALS--AITSKGGHFL   82 (257)
Q Consensus        62 ~~v~~~~~~~~--~~~~~g~~~~   82 (257)
                      -|+|.....+.  .....|...+
T Consensus        83 ecTG~f~~~e~a~~hl~~G~KvI  105 (178)
T d1b7go1          83 DTTPNGVGAQYKPIYLQLQRNAI  105 (178)
T ss_dssp             ECCSTTHHHHHHHHHHHTTCEEE
T ss_pred             ECCCCcCCHHHHHHHHHcCCEEE
Confidence            99998766554  4445565543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.51  E-value=0.0001  Score=52.93  Aligned_cols=85  Identities=16%  Similarity=0.309  Sum_probs=51.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-C---eEEEEcCCch--hHHHHHHC-CCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-F---KVTVWNRTLS--KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~---~V~~~~r~~~--~~~~l~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      |||+|||+ |..|..+.+.|.++. |   ++..+..+..  +...+... .........+..+++|++|+|+|.....+.
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~~s~~~   80 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGSYTEKV   80 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCchHHHHH
Confidence            99999987 999999999888653 3   4554433211  11111101 111111223456899999999998877665


Q ss_pred             --HHHhcCCc--EEecc
Q 025163           73 --AITSKGGH--FLEAP   85 (257)
Q Consensus        73 --~~~~~g~~--~~~~p   85 (257)
                        .+...|..  ++|..
T Consensus        81 ~~~l~~~g~~~~VIDlS   97 (147)
T d1mb4a1          81 YPALRQAGWKGYWIDAA   97 (147)
T ss_dssp             HHHHHHTTCCSEEEESS
T ss_pred             hHHHHHcCCceEEEeCC
Confidence              55566643  77743

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.50  E-value=3.6e-05  Score=57.36  Aligned_cols=65  Identities=17%  Similarity=0.231  Sum_probs=50.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCc-----ccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT-----VGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~-----~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +|.|||+|.++.+++..|.+.| +|++++|++++.+.+.+.     ...     ...+......++|++|-|+|..
T Consensus        20 ~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g   94 (177)
T d1nvta1          20 NIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIG   94 (177)
T ss_dssp             EEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTT
T ss_pred             EEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccc
Confidence            6899999999999999998776 899999999998887642     111     1123344456789999999965

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.50  E-value=0.00032  Score=51.23  Aligned_cols=71  Identities=18%  Similarity=0.135  Sum_probs=55.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh----hcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI----KKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~----~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++..++.|+...     .+..+.+    .+.+.++.++..+...+.
T Consensus        30 ~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~  109 (166)
T d1llua2          30 WVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQ  109 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHHHHH
T ss_pred             EEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchHHHH
Confidence            6889999999999999999999999999999999999999886421     2333322    345777788877766655

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.48  E-value=0.00043  Score=51.02  Aligned_cols=82  Identities=16%  Similarity=0.268  Sum_probs=56.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeE-EEEcCCchh-HHHHHHC------------------CCcccCCHHHHhhcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKV-TVWNRTLSK-CDELVAH------------------GATVGGSPAEVIKKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V-~~~~r~~~~-~~~l~~~------------------g~~~~~~~~~~~~~~dv   59 (257)
                      |||+|.|.|++|..+.+.+.+.. .+| .+.|.+++. ...+...                  +.....+..++.+++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            48999999999999999998764 454 445665543 2333332                  23444567777789999


Q ss_pred             EEEccCChHHHHH--HHHhcCCcEE
Q 025163           60 TIGMLADPAAALS--AITSKGGHFL   82 (257)
Q Consensus        60 ii~~v~~~~~~~~--~~~~~g~~~~   82 (257)
                      |+-|++.....+.  .....|+..+
T Consensus        83 ViEcTG~f~~~~~~~~hl~~G~k~V  107 (172)
T d2czca2          83 IVDATPGGIGAKNKPLYEKAGVKAI  107 (172)
T ss_dssp             EEECCSTTHHHHHHHHHHHHTCEEE
T ss_pred             EEECCCCCCCHHHHHHHHHcCCCEE
Confidence            9999998876665  3445676654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.47  E-value=0.00012  Score=56.57  Aligned_cols=67  Identities=25%  Similarity=0.341  Sum_probs=54.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHh-hcCceEEEccCChH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPA   68 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~   68 (257)
                      ++|.|-|.|++|..+|+.|.+.|..|++.|.++.+++.+... |.... ++++.. .+||+++-|--...
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~-~~~~~~~~~cDIl~PcA~~~~  108 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALGAV  108 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCccc-CCcccccccccEecccccccc
Confidence            379999999999999999999999999999999998887754 55544 455544 58999998865443

>d1ks9a1 a.100.1.7 (A:168-291) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Ketopantoate reductase PanE
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.0012  Score=45.71  Aligned_cols=66  Identities=17%  Similarity=0.192  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHcCCC--HHHHHHHHh----hc-CCCchhhhccCCcccCCCCCCCcccchHHHHH------------H
Q 025163          147 MNTFSEGLVLAEKSGLD--PRTLLDVLD----LG-GIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM------------R  207 (257)
Q Consensus       147 ~~~~~E~~~l~~~~g~~--~~~~~~~~~----~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~------------~  207 (257)
                      ...+.|+..++++.|++  .+...+.+.    .. ...                      +.|+.|+            +
T Consensus        38 ~~l~~E~~~va~a~g~~~~~~~~~~~~~~~~~~~~~~~----------------------sSM~qD~~~gr~tEid~i~G   95 (124)
T d1ks9a1          38 MQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENI----------------------SSMLQDIRALRHTEIDYING   95 (124)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCC----------------------CHHHHHHHTTCCCSGGGTHH
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhccCCCC----------------------ChHHHHHHcCCcchHHHHHH
Confidence            46788999999999865  343333322    11 111                      2234443            7


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHH
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKAR  234 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~  234 (257)
                      .+++.++++|+++|..+.++++++...
T Consensus        96 ~vv~~a~~~gi~tP~~~~l~~lik~~E  122 (124)
T d1ks9a1          96 FLLRRARAHGIAVPENTRLFEMVKRKE  122 (124)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcHHHHHHHHHHHHh
Confidence            899999999999999999999987653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.45  E-value=0.00014  Score=54.31  Aligned_cols=66  Identities=21%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC--------CCc--c--c---CCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GAT--V--G---GSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~--------g~~--~--~---~~~~~~~~~~dvii~~v~   65 (257)
                      +|.|||+|.+|.+++..|.+.|. ++++++|++++.+++...        ...  .  .   .+..+....+|+||-|+|
T Consensus        20 ~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp   99 (182)
T d1vi2a1          20 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK   99 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSS
T ss_pred             EEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccccC
Confidence            68999999999999999999986 699999998876654321        111  1  1   123445678999999999


Q ss_pred             Ch
Q 025163           66 DP   67 (257)
Q Consensus        66 ~~   67 (257)
                      ..
T Consensus       100 ~G  101 (182)
T d1vi2a1         100 VG  101 (182)
T ss_dssp             TT
T ss_pred             Cc
Confidence            65

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.44  E-value=0.00022  Score=52.72  Aligned_cols=71  Identities=15%  Similarity=0.048  Sum_probs=56.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~~~   69 (257)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++.+..++.|+..+     .++.+.+      ...|++|-|+..+..
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~  109 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSET  109 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTH
T ss_pred             EEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHH
Confidence            58899999999999999998896 69999999999998888886422     2333332      238999999988766


Q ss_pred             HHH
Q 025163           70 ALS   72 (257)
Q Consensus        70 ~~~   72 (257)
                      .+.
T Consensus       110 ~~~  112 (174)
T d1jqba2         110 LSQ  112 (174)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.43  E-value=0.00016  Score=58.20  Aligned_cols=98  Identities=15%  Similarity=0.099  Sum_probs=65.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhh---c-CCCchhhhccCCcccCCCCCCCcccch----
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDL---G-GIANPMFKGKGPTMLQSNYAPAFPLKH----  201 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~---~-~~~s~~~~~~~~~~~~~~~~~~~~~~~----  201 (257)
                      |+|+.+||++|.+.+.++++++|++.+++..+.+.+++.++...   + ...|++++....-+..+|-....-++.    
T Consensus         1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~il~~~d~~g~~l~d~I~d~   80 (300)
T d1pgja1           1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDR   80 (300)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCC
T ss_pred             CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHHHhhcCCCCchhHHHhccc
Confidence            78999999999999999999999999999999999877777653   3 245555443211111222111110110    


Q ss_pred             --HHHHHHHHHHHHhhcCCCchHHHHHH
Q 025163          202 --QQKDMRLALALGDENAVSMPIAAAAN  227 (257)
Q Consensus       202 --~~kd~~~~~~~a~~~g~~~p~~~~~~  227 (257)
                        ....-....+.+-+.|+|+|+...++
T Consensus        81 a~~kGTG~Wt~~~al~~gvp~p~i~~Av  108 (300)
T d1pgja1          81 IGSKGTGLWSAQEALEIGVPAPSLNMAV  108 (300)
T ss_dssp             CCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence              11123567888889999999987654

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.43  E-value=7.3e-05  Score=54.35  Aligned_cols=66  Identities=11%  Similarity=0.070  Sum_probs=47.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-------eEEEEcCCch--hHHHHH----HC------CCcccCCHHHHhhcCceE
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCDELV----AH------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-------~V~~~~r~~~--~~~~l~----~~------g~~~~~~~~~~~~~~dvi   60 (257)
                      |||+|||+ |.+|..++..|+..+.       ++.++|.+..  +.+.+.    ..      ......+..++.+++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            79999995 9999999999986431       5777777543  333332    11      234566788899999999


Q ss_pred             EEccCC
Q 025163           61 IGMLAD   66 (257)
Q Consensus        61 i~~v~~   66 (257)
                      +++-..
T Consensus        84 Vitag~   89 (154)
T d5mdha1          84 ILVGSM   89 (154)
T ss_dssp             EECCSC
T ss_pred             EEeccc
Confidence            998643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.43  E-value=0.00091  Score=48.66  Aligned_cols=71  Identities=17%  Similarity=0.106  Sum_probs=55.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC-----CHHHH----hhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG-----SPAEV----IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~----~~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|...++.+...|.+|++.++++++++.+++.|+...-     +..+.    ..+.+.++.++......+.
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  109 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPAFQS  109 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHHHHH
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCCHHHHHH
Confidence            68899999999999999999999999999999999999998864332     22222    2456777788887766665

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.0007  Score=48.69  Aligned_cols=70  Identities=17%  Similarity=0.236  Sum_probs=51.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhH----HHHHHCCCccc----CCHH---HH-hhcCceEEEccCChHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC----DELVAHGATVG----GSPA---EV-IKKCTITIGMLADPAA   69 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~----~~l~~~g~~~~----~~~~---~~-~~~~dvii~~v~~~~~   69 (257)
                      +|-|+|.|.+|..+++.|.+.|++|++.+.++++.    +.+...|+.+.    ++++   ++ ++++|.++++++++..
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            38899999999999999999999999999988753    33444465432    2332   21 3679999999998755


Q ss_pred             HH
Q 025163           70 AL   71 (257)
Q Consensus        70 ~~   71 (257)
                      ..
T Consensus        85 n~   86 (153)
T d1id1a_          85 NA   86 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.39  E-value=0.0001  Score=50.97  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=30.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ||.|||.|.+|..+|..|.+.|.+|+++.|.+
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             EEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            79999999999999999999999999999864

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.38  E-value=0.00024  Score=49.76  Aligned_cols=64  Identities=17%  Similarity=0.252  Sum_probs=44.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEE-EcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHHh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV-WNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AITS   76 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~-~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~~   76 (257)
                      |||+|.|+ |.||+.+++.+.+.||++.. +|++..                 +...++|+||=.+.+....+.  ....
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~~-----------------~~~~~~DVvIDFS~p~~~~~~l~~~~~   63 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNGV-----------------EELDSPDVVIDFSSPEALPKTVDLCKK   63 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTEE-----------------EECSCCSEEEECSCGGGHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCcH-----------------HHhccCCEEEEecCHHHHHHHHHHHHh
Confidence            89999996 99999999999999998664 454321                 223568998877665555444  4444


Q ss_pred             cCCcE
Q 025163           77 KGGHF   81 (257)
Q Consensus        77 ~g~~~   81 (257)
                      .+..+
T Consensus        64 ~~~p~   68 (128)
T d1vm6a3          64 YRAGL   68 (128)
T ss_dssp             HTCEE
T ss_pred             cCCCE
Confidence            55443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.38  E-value=0.00016  Score=54.44  Aligned_cols=64  Identities=22%  Similarity=0.212  Sum_probs=48.9

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC-----CCc-------ccCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT-------VGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~-----g~~-------~~~~~~~~~~~~dvii~~v~   65 (257)
                      +|-|.| .|.+|..+++.|++.|.+|++.+|++++.+.+.+.     ...       -..+.++++.+.|++|-+..
T Consensus        25 ~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~Ag  101 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAGA  101 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecCc
Confidence            466777 69999999999999999999999999988776552     111       11244556788999988754

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00033  Score=51.88  Aligned_cols=83  Identities=23%  Similarity=0.296  Sum_probs=54.4

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEE-cCCch--hHHHHHH--CC--CcccCCHHHHhhcCceEEEccCChHHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVW-NRTLS--KCDELVA--HG--ATVGGSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~-~r~~~--~~~~l~~--~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      |||+|+|+ |..|..+.+.|.++-+ ++... .++..  ++...-.  .+  .....++++..+++|++|+|+|.....+
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s~~   81 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGASYD   81 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHHHH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHHHH
Confidence            58999987 9999999999998754 55554 33211  2222211  11  1223466677778999999999987766


Q ss_pred             HHHHhcCCcEEe
Q 025163           72 SAITSKGGHFLE   83 (257)
Q Consensus        72 ~~~~~~g~~~~~   83 (257)
                      ......++.++|
T Consensus        82 ~~~~~~~~~VID   93 (176)
T d1vkna1          82 LVRELKGVKIID   93 (176)
T ss_dssp             HHTTCCSCEEEE
T ss_pred             HHHhhccceEEe
Confidence            433335666666

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.34  E-value=0.00068  Score=46.18  Aligned_cols=77  Identities=18%  Similarity=0.151  Sum_probs=53.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh-HHHHHHC-CCcc---cCCHHHHhhcCceEEEccCChHHHHH---H
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAH-GATV---GGSPAEVIKKCTITIGMLADPAAALS---A   73 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~-~~~l~~~-g~~~---~~~~~~~~~~~dvii~~v~~~~~~~~---~   73 (257)
                      ||.|||.|.+|..-++.|.+.|.+|++++...+. ...+.+. +++.   ..+.. .+.++++++.|+.+...-..   .
T Consensus        14 ~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~-dl~~~~lv~~at~d~~~n~~i~~~   92 (113)
T d1pjqa1          14 DCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET-LLDSCWLAIAATDDDTVNQRVSDA   92 (113)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGG-GGTTCSEEEECCSCHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHH-HhCCCcEEeecCCCHHHHHHHHHH
Confidence            7999999999999999999999999999775443 3334443 3322   22333 35688999999887755443   3


Q ss_pred             HHhcCC
Q 025163           74 ITSKGG   79 (257)
Q Consensus        74 ~~~~g~   79 (257)
                      .+.+|+
T Consensus        93 a~~~~i   98 (113)
T d1pjqa1          93 AESRRI   98 (113)
T ss_dssp             HHHTTC
T ss_pred             HHHcCC
Confidence            444453

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.32  E-value=0.00016  Score=53.08  Aligned_cols=67  Identities=19%  Similarity=0.190  Sum_probs=52.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC------CHHH-HhhcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG------SPAE-VIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~------~~~~-~~~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|.+|+++++++++++.+++.|+...-      +..+ ..+..|+++.|+....
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~  103 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT  103 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence            68999999999999998888899999999999999999888864211      1111 2245799999877543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=97.30  E-value=8.9e-05  Score=58.73  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |||+|||+|.-|...|..|+++|++|+++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            899999999999999999999999999999864

>d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.29  E-value=0.00056  Score=49.50  Aligned_cols=114  Identities=11%  Similarity=-0.027  Sum_probs=78.4

Q ss_pred             ChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCchhhhccCCcccCCCCCC-----
Q 025163          130 GNGAKMKLV-----VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG----GIANPMFKGKGPTMLQSNYAP-----  195 (257)
Q Consensus       130 g~a~~~kl~-----~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~-----  195 (257)
                      |....+++.     .|+..+++..++.|+..+++..|-++++++.+...+    ++.+.....++..+.++ .+.     
T Consensus        20 Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~sRN~~~G~~l~~G-~~~~e~~~   98 (155)
T d1txga1          20 AWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRGGRNGMLGELLGKG-LSIDEAME   98 (155)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTCHHHHHHHHHHHTT-CCHHHHHH
T ss_pred             HHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCCCCccHHHHHHhhh-hhHHHHHH
Confidence            444455665     599999999999999999999999998887655432    34443333333344332 211     


Q ss_pred             -----CcccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 025163          196 -----AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK  251 (257)
Q Consensus       196 -----~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~  251 (257)
                           ...+.+....++.+.+.++++++++|+++.+++++.       ++.|...+++.|.
T Consensus        99 ~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~~~~~i~~L~  152 (155)
T d1txga1          99 ELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLY-------EGLKVEEVLFELA  152 (155)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHHH
T ss_pred             HhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CcCCHHHHHHHHH
Confidence                 112344666778899999999999999999999886       3456665555543

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.25  E-value=0.00042  Score=49.24  Aligned_cols=74  Identities=15%  Similarity=0.155  Sum_probs=57.9

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      +|+|||+    +..|..+..+|.+.||+|+.++.+.+.+     .|..+..++.|+-...|++++++|.....+.  .+.
T Consensus        21 sIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp~~~~~~~~~e~~   95 (139)
T d2d59a1          21 KIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAI   95 (139)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHH
T ss_pred             eEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeCHHHHHHHHHHHH
Confidence            5999996    5799999999999999998888754332     3778888999887889999999997766554  333


Q ss_pred             hcCCc
Q 025163           76 SKGGH   80 (257)
Q Consensus        76 ~~g~~   80 (257)
                      ..|+.
T Consensus        96 ~~g~k  100 (139)
T d2d59a1          96 KKGAK  100 (139)
T ss_dssp             HHTCS
T ss_pred             HhCCC
Confidence            44544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=0.00024  Score=52.12  Aligned_cols=71  Identities=21%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc---CCHHH---HhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAE---VIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~---~~~~~---~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|.|+|+|.+|...++.+...|.++++.++++++.+.+++.|+...   .+...   ..+..|++|-|+........
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~  109 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDD  109 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHH
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHH
Confidence            6899999999999999999999999999999999888888886432   12221   22468999999987654443

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.18  E-value=0.00019  Score=55.73  Aligned_cols=31  Identities=32%  Similarity=0.605  Sum_probs=30.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      ||.|||+|.+|...|..|+++|++|++++|+
T Consensus         8 kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           8 RVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            7999999999999999999999999999985

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00048  Score=47.73  Aligned_cols=33  Identities=30%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+.|||.|.+|.-+|..|.+.|.+|+++.+++.
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            689999999999999999999999999988753

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.12  E-value=0.00072  Score=49.79  Aligned_cols=71  Identities=17%  Similarity=0.155  Sum_probs=54.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCe-EEEEcCCchhHHHHHHCCCcc-----cCCHHHHhh-----cCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGATV-----GGSPAEVIK-----KCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~-V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~~-----~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+...|.. |++.++++++++.+++.|+..     ..++.+.++     ..|++|-|+......
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~  110 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEIL  110 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHH
T ss_pred             EEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHH
Confidence            689999999999999999888875 667799999999888888632     123444332     379999999988776


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      +.
T Consensus       111 ~~  112 (174)
T d1f8fa2         111 KQ  112 (174)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.11  E-value=0.00024  Score=55.45  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=31.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +||.|||+|.-|..+|..|+++|++|++++|+++
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            5899999999999999999999999999998654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.09  E-value=0.0013  Score=48.45  Aligned_cols=71  Identities=17%  Similarity=0.161  Sum_probs=56.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCC-------HHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. .|++.|+++++++..++.|+...-+       ..+..     ..+|++|-|+..+.
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~  110 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQ  110 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHH
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccch
Confidence            58899999999999999999997 6888999999999888888643221       12122     35899999999987


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       111 ~~~~  114 (174)
T d1e3ia2         111 TLKA  114 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7766

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.08  E-value=0.00065  Score=47.42  Aligned_cols=69  Identities=14%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~----~~~~~~----~~~~dvii~~v~~~~~~~~   72 (257)
                      .|-|+|.|.+|..++..|.  +++|.+.+.++++.+.+...|..+.    ++++-+    +.+++.++++++++.....
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~   78 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIH   78 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHH
Confidence            4789999999999999984  6788999999999999988876532    233222    3579999999988755443

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.07  E-value=0.0011  Score=48.91  Aligned_cols=71  Identities=20%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccC------C-HHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG------S-PAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~------~-~~~~~-----~~~dvii~~v~~~~   68 (257)
                      .|.|+|+|.+|...++.+...|. +|++.|+++++++..++.|+...-      + ..+..     .+.|++|.|+....
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~  111 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLE  111 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHH
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCchH
Confidence            48899999999999999999995 799999999999988888865321      1 12111     36999999999887


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       112 ~~~~  115 (176)
T d1d1ta2         112 TMID  115 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00031  Score=52.20  Aligned_cols=33  Identities=24%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||+|||.|..|...|..|+++||+|++|++++.
T Consensus        45 ~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          45 NLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             EEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            799999999999999999999999999999765

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=97.03  E-value=0.0012  Score=48.57  Aligned_cols=71  Identities=17%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCC-------HHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. +|++.|+++++++..++.|+...-+       ..+..     ...|++|.|+....
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~  109 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIE  109 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCch
Confidence            58999999999999999998885 7999999999999999988753321       22222     25899999999887


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       110 ~~~~  113 (174)
T d1p0fa2         110 TMMN  113 (174)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.01  E-value=0.00051  Score=48.12  Aligned_cols=74  Identities=16%  Similarity=0.118  Sum_probs=58.5

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH--HH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~~   74 (257)
                      +|+|||+    |.+|..+.++|.+.| ++|+.++.+.+.+     .|.+...|+.|+-...|++++++|.....+.  .+
T Consensus        10 sIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp~~~~~~~~~~~   84 (129)
T d2csua1          10 GIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPKRFVKDTLIQC   84 (129)
T ss_dssp             EEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCHHHHHHHHHHH
T ss_pred             eEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecChHHhHHHHHHH
Confidence            6999997    899999999998876 6898888765443     3788888999887889999999997766665  44


Q ss_pred             HhcCCc
Q 025163           75 TSKGGH   80 (257)
Q Consensus        75 ~~~g~~   80 (257)
                      ...|+.
T Consensus        85 ~~~g~~   90 (129)
T d2csua1          85 GEKGVK   90 (129)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            445554

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=96.99  E-value=0.00088  Score=53.23  Aligned_cols=66  Identities=23%  Similarity=0.194  Sum_probs=46.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchh--------HHHHHHCCCccc-------CCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK--------CDELVAHGATVG-------GSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~--------~~~l~~~g~~~~-------~~~~~~~~~~dvii~~v   64 (257)
                      +||.|+|+ |.+|..++..|.++||+|++.+|++..        ...+...++...       .+..++.++++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            58999985 999999999999999999999997542        222333444322       12334556778888776


Q ss_pred             CC
Q 025163           65 AD   66 (257)
Q Consensus        65 ~~   66 (257)
                      +.
T Consensus        84 ~~   85 (312)
T d1qyda_          84 AG   85 (312)
T ss_dssp             CC
T ss_pred             hh
Confidence            53

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00098  Score=47.63  Aligned_cols=84  Identities=15%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCC-C---eEEEEcCCchhHHHH--HHCCCcc-cCCHHHHhhcCceEEEccCChHHHHH-
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNG-F---KVTVWNRTLSKCDEL--VAHGATV-GGSPAEVIKKCTITIGMLADPAAALS-   72 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g-~---~V~~~~r~~~~~~~l--~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~-   72 (257)
                      ||||||+ |.+|+.+.+.|.++. |   +++.+..+...-...  ....... .....+..+++|++|+|+|.....+. 
T Consensus         3 kVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~~~~   82 (146)
T d1t4ba1           3 NVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIY   82 (146)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHHHHHHH
T ss_pred             EEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchHHHHhh
Confidence            6999988 999999999887753 3   566665543321111  1111111 12222456899999999998876654 


Q ss_pred             -HHHhcCC--cEEecc
Q 025163           73 -AITSKGG--HFLEAP   85 (257)
Q Consensus        73 -~~~~~g~--~~~~~p   85 (257)
                       .+...|.  .++|..
T Consensus        83 ~~~~~~g~~~~VID~S   98 (146)
T d1t4ba1          83 PKLRESGWQGYWIDAA   98 (146)
T ss_dssp             HHHHHTTCCCEEEECS
T ss_pred             HHHHhcCCCeecccCC
Confidence             4555564  477744

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.90  E-value=0.00043  Score=51.54  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~   34 (257)
                      .||+|||+|..|...|..|+++|+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            389999999999999999999998 5999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=96.90  E-value=0.0012  Score=48.65  Aligned_cols=64  Identities=14%  Similarity=0.241  Sum_probs=46.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCC---C----eEEEEcCCch--hHHHHH----HC------CCcccCCHHHHhhcCceEE
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNG---F----KVTVWNRTLS--KCDELV----AH------GATVGGSPAEVIKKCTITI   61 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g---~----~V~~~~r~~~--~~~~l~----~~------g~~~~~~~~~~~~~~dvii   61 (257)
                      ||+|+|+ |.+|..++..|+...   .    ++.++|++..  +++.+.    +.      .....++..++.+++|+||
T Consensus        26 kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvVv  105 (175)
T d7mdha1          26 NIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWAL  105 (175)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceEE
Confidence            7999996 999999999998753   1    5677777543  233222    11      2345678889999999999


Q ss_pred             EccC
Q 025163           62 GMLA   65 (257)
Q Consensus        62 ~~v~   65 (257)
                      ++-.
T Consensus       106 i~ag  109 (175)
T d7mdha1         106 LIGA  109 (175)
T ss_dssp             ECCC
T ss_pred             Eeec
Confidence            9863

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.89  E-value=0.00061  Score=46.70  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||.|.+|..+|..|.+.|.+|+++.|.+.
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            799999999999999999999999999988654

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.83  E-value=0.0013  Score=48.66  Aligned_cols=85  Identities=11%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeEEEE-cCC--c---hhHHHHHHC--C-----CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRT--L---SKCDELVAH--G-----ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V~~~-~r~--~---~~~~~l~~~--g-----~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      |||+|||+ |..|..+.+.|..+ .+++... .++  .   ++.......  +     .....+..+...++|++|+|+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            58999995 99999999999998 4565433 221  1   122222110  1     1122344444578999999999


Q ss_pred             ChHHHHH--HHHhcCCcEEecc
Q 025163           66 DPAAALS--AITSKGGHFLEAP   85 (257)
Q Consensus        66 ~~~~~~~--~~~~~g~~~~~~p   85 (257)
                      .....+.  .+...+...+|..
T Consensus        82 ~~~s~~~~~~~~~~~~~vIDlS  103 (179)
T d2g17a1          82 HEVSHDLAPQFLQAGCVVFDLS  103 (179)
T ss_dssp             HHHHHHHHHHHHHTTCEEEECS
T ss_pred             chhHHHHhhhhhhcCceeeccc
Confidence            8877665  5566777777733

>d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Glycerol-3-phosphate dehydrogenase
domain: Glycerol-3-phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.82  E-value=0.00019  Score=52.38  Aligned_cols=114  Identities=13%  Similarity=0.121  Sum_probs=78.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhc----CCCchhhhcc--CCcccCCCCC-----CCcc
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLG----GIANPMFKGK--GPTMLQSNYA-----PAFP  198 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~----~~~s~~~~~~--~~~~~~~~~~-----~~~~  198 (257)
                      |....+++..|+..+++..++.|+..+++..|-.+++++.+.+.+    ++.++..+|+  +..+.++...     ....
T Consensus        21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~  100 (160)
T d1n1ea1          21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA  100 (160)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence            444555677899999999999999999999998887776554432    3555555553  2222222110     0112


Q ss_pred             cchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 025163          199 LKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV  250 (257)
Q Consensus       199 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~  250 (257)
                      +.+...-.+.+.+.++++++++|+++.+++++.       +..+...+++.|
T Consensus       101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~L  145 (160)
T d1n1ea1         101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADL  145 (160)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHH
Confidence            445667788999999999999999999999884       455555555544

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00078  Score=46.12  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||.|||.|.+|..+|..|.+.|++|+++.|.+.
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            799999999999999999999999999998753

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.80  E-value=0.00082  Score=51.16  Aligned_cols=64  Identities=16%  Similarity=0.086  Sum_probs=45.3

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEE--EEcCCchhHHHHHHCCCcc-------cCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVT--VWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~--~~~r~~~~~~~l~~~g~~~-------~~~~~~~~~~~dvii~~v~   65 (257)
                      ++|.|.| .|.+|..+++.|+++||+|.  ...|++++.+.+.. ++..       ..+..++++++|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence            3688997 69999999999999998744  45788877665543 2221       1234456678898887754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.80  E-value=0.00085  Score=46.34  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||.|.+|..+|..|.+.|.+|+++++++.
T Consensus        32 ~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          32 RLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            799999999999999999999999999988754

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.77  E-value=0.00084  Score=47.41  Aligned_cols=68  Identities=18%  Similarity=0.167  Sum_probs=54.2

Q ss_pred             eEEEEcC----ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHH
Q 025163            2 EVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALS   72 (257)
Q Consensus         2 kI~iIG~----G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~   72 (257)
                      +|+|||+    +..|..+.++|.+.|+++..++.++.. +.+  .|.....++.|+-...|++++++|.....+.
T Consensus        15 sIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i--~g~~~~~~l~~i~~~iD~v~v~~p~~~v~~~   86 (136)
T d1iuka_          15 TIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL--FGEEAVASLLDLKEPVDILDVFRPPSALMDH   86 (136)
T ss_dssp             EEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE--TTEECBSSGGGCCSCCSEEEECSCHHHHTTT
T ss_pred             eEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee--eceecccchhhccCCCceEEEeccHHHHHHH
Confidence            5999997    789999999999999999999876431 111  3677888888887789999999996655443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00098  Score=45.27  Aligned_cols=35  Identities=29%  Similarity=0.430  Sum_probs=32.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      +||+|||.|..|.-|+....+.|++|.++|.+++.
T Consensus        12 ~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTC
T ss_pred             CEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCC
Confidence            37999999999999999999999999999988663

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=96.74  E-value=0.00067  Score=53.27  Aligned_cols=31  Identities=23%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |.|||+|.+|...|..|+++|++|+++++++
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            9999999999999999999999999999864

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.74  E-value=0.0074  Score=44.04  Aligned_cols=81  Identities=19%  Similarity=0.264  Sum_probs=54.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEE-EcCCchh-HHHHHHC------------------CCcccCCHHHHhhcCceE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTV-WNRTLSK-CDELVAH------------------GATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~-~~r~~~~-~~~l~~~------------------g~~~~~~~~~~~~~~dvi   60 (257)
                      ||||-|.|++|..+.+.+.+++ .+|+. .++++.. ...+...                  +.....+..++.+++|+|
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDvV   82 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCEE
Confidence            6999999999999999998776 45544 4555432 2233222                  233344566777899999


Q ss_pred             EEccCChHHHHH--HHHhcCCcEE
Q 025163           61 IGMLADPAAALS--AITSKGGHFL   82 (257)
Q Consensus        61 i~~v~~~~~~~~--~~~~~g~~~~   82 (257)
                      +-|++.....+.  ...+.|...+
T Consensus        83 iEcTG~f~~~~~~~~hl~~G~K~v  106 (171)
T d1cf2o1          83 IDCTPEGIGAKNLKMYKEKGIKAI  106 (171)
T ss_dssp             EECCSTTHHHHHHHHHHHTTCEEE
T ss_pred             EEccCCCCCHHHHHHHHHcCCCEE
Confidence            999998766554  3335566543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.73  E-value=9.7e-05  Score=57.03  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=24.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKV   26 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V   26 (257)
                      |||.|||+|.+|...|..|+++|++|
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCc
Confidence            99999999999999999999999854

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.73  E-value=0.00077  Score=52.76  Aligned_cols=34  Identities=26%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~   34 (257)
                      |||.|||+|..|..+|..|.++| ++|++++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            79999999999999999999999 59999998764

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0013  Score=53.50  Aligned_cols=31  Identities=32%  Similarity=0.525  Sum_probs=29.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      |||.|+|. |.+|+.++..|++.||+|+++||
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            99999965 99999999999999999999976

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.70  E-value=0.0037  Score=45.44  Aligned_cols=71  Identities=13%  Similarity=0.037  Sum_probs=54.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCChH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~~   68 (257)
                      +|.|+|+ |.+|...++.+...| .+|+++++++++.+.+++.|+...     .++.+.+      ...|++|-|+....
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~  109 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEK  109 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHH
T ss_pred             EEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccch
Confidence            5889995 999999999988888 489999999999999988886321     2332222      24899999998876


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       110 ~~~~  113 (170)
T d1jvba2         110 TLSV  113 (170)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            6554

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.0011  Score=45.80  Aligned_cols=33  Identities=27%  Similarity=0.455  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++.|||.|.+|..+|..|.+.|++|+++.+++.
T Consensus        34 ~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          34 EAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             cEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            689999999999999999999999999998754

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.69  E-value=0.00088  Score=46.33  Aligned_cols=31  Identities=23%  Similarity=0.191  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      ++.|||.|.+|..+|..|.+.|.+|+++.|+
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            6899999999999999999999999999875

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.68  E-value=0.0013  Score=45.45  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++.|||.|.+|.-+|..|.+.|.+|+++.|++.
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            689999999999999999999999999988754

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.053  Score=41.40  Aligned_cols=151  Identities=17%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             CeEEEEcCChhHHHHHHHHH-HCCCeEEEEc-C----------CchhHHHHHHC-C-------CcccCCHHHHhh-cCce
Q 025163            1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWN-R----------TLSKCDELVAH-G-------ATVGGSPAEVIK-KCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~-~~g~~V~~~~-r----------~~~~~~~l~~~-g-------~~~~~~~~~~~~-~~dv   59 (257)
                      .+|.|-|.|++|..+|+.|. +.|..|+.++ .          +.+.+..+.+. +       .+.. +.++... +||+
T Consensus        32 ~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~DI  110 (234)
T d1b26a1          32 ATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERI-TNEELLELDVDI  110 (234)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEE-CHHHHHTSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceee-ccccccccccce
Confidence            37899999999999999997 5698877653 2          22334444332 2       1112 4555554 8999


Q ss_pred             EEEccCChHHHHHHHHhcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCC-C---C--hHH
Q 025163           60 TIGMLADPAAALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGE-V---G--NGA  133 (257)
Q Consensus        60 ii~~v~~~~~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~-~---g--~a~  133 (257)
                      ++-|--.....+.....-...++-                  -+.+...-....++|..-|  +.++.+ +   |  ...
T Consensus       111 ~~PcA~~~~I~~~~a~~l~~~~I~------------------e~AN~p~t~~a~~~L~~rg--I~~~PD~~aNaGGVi~s  170 (234)
T d1b26a1         111 LVPAALEGAIHAGNAERIKAKAVV------------------EGANGPTTPEADEILSRRG--ILVVPDILANAGGVTVS  170 (234)
T ss_dssp             EEECSCTTCBCHHHHTTCCCSEEE------------------CCSSSCBCHHHHHHHHHTT--CEEECHHHHTTHHHHHH
T ss_pred             eecchhcccccHHHHHHhhhceEe------------------ecCCCCCCHHHHHHHHHCC--eEEechHHhcCCCeeee
Confidence            998865544333323222222211                  1111111123345555443  455544 1   1  112


Q ss_pred             HHHHH-------------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHh
Q 025163          134 KMKLV-------------VNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLD  172 (257)
Q Consensus       134 ~~kl~-------------~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~  172 (257)
                      ++.+.             .+-+...+...+.+.+..+++.++++.+....+.
T Consensus       171 ~~E~~qn~~~~~w~~e~V~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~A  222 (234)
T d1b26a1         171 YFEWVQDLQSFFWDLDQVRNALEKMMKGAFNDVMKVKEKYNVDMRTAAYILA  222 (234)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             ehhcccccchhcccHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            22333             3344445666777888888888888776655443

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=96.68  E-value=0.0013  Score=48.85  Aligned_cols=72  Identities=13%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC-CeEEEE-cCCch--hHHHHHH----CCCc-ccCCHHHHhhcCceEEEccCChHHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLS--KCDELVA----HGAT-VGGSPAEVIKKCTITIGMLADPAAA   70 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g-~~V~~~-~r~~~--~~~~l~~----~g~~-~~~~~~~~~~~~dvii~~v~~~~~~   70 (257)
                      +||+|||+ |..|..+.+.|.++- +++... .++..  ++.....    .... ......+...++|++|+|+|.....
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s~   85 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTTQ   85 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHHH
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchHH
Confidence            48999987 999999999999875 365554 32211  1222111    1111 1222334457899999999998776


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      +.
T Consensus        86 ~~   87 (183)
T d2cvoa1          86 EI   87 (183)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=96.68  E-value=0.0021  Score=50.54  Aligned_cols=65  Identities=20%  Similarity=0.347  Sum_probs=45.3

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhH---------HHHHHCCCccc-------CCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKC---------DELVAHGATVG-------GSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~---------~~l~~~g~~~~-------~~~~~~~~~~dvii~~   63 (257)
                      +||.|+|+ |.+|..++..|.++||+|++++|++...         ..+...++...       .+..+..+.++.++.+
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~~   83 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIST   83 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeeec
Confidence            58999986 9999999999999999999999976532         22222343321       1233455677877776


Q ss_pred             cC
Q 025163           64 LA   65 (257)
Q Consensus        64 v~   65 (257)
                      ..
T Consensus        84 ~~   85 (307)
T d1qyca_          84 VG   85 (307)
T ss_dssp             CC
T ss_pred             cc
Confidence            64

>d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Conserved hypothetical protein MTH1747
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.67  E-value=0.0029  Score=42.72  Aligned_cols=99  Identities=13%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCCCch--hhhccCCcccCCCCCCCcccchHHHHHH
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGIANP--MFKGKGPTMLQSNYAPAFPLKHQQKDMR  207 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~~kd~~  207 (257)
                      |.++.+||+...+..++.+++.|++..+++.|+..+.+..+-.+.. ..+  ....+.+++....       .-...+++
T Consensus         1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~~~l~~s~~-~~~~~~~~~~v~~~~~ha-------~Rr~~EM~   72 (112)
T d1i36a1           1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLEMLEYTEG-NDFRESAISRLKSSCIHA-------RRRYEEMK   72 (112)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSC-SSTHHHHHHHHHHHHHTH-------HHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcCC-ccHHHHHHHHhcCCcchh-------hHHHHHHH
Confidence            6789999999999999999999999999999998876655533322 111  1111111111100       01234677


Q ss_pred             HHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q 025163          208 LALALGDENAVSMPIAAAANEAFKKARSLG  237 (257)
Q Consensus       208 ~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g  237 (257)
                      .+.++.++. ++..+.+++.++++...+-+
T Consensus        73 Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~  101 (112)
T d1i36a1          73 EVQDMLAEV-IDPVMPTCIIRIFDKLKDVK  101 (112)
T ss_dssp             HHHHHHHTT-SCCSHHHHHHHHHHHHCC--
T ss_pred             HHHHHHHHh-CCchHHHHHHHHHHHHHhcC
Confidence            888888884 88889999999998875543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.64  E-value=0.0048  Score=45.10  Aligned_cols=71  Identities=17%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC-CeEEEEcCCchhHHHHHHCCCcccC-------CHHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHGATVGG-------SPAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~~~~~~l~~~g~~~~~-------~~~~~~-----~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...+..+...| ..|++.++++++.+..++.|....-       ...+..     ...|++|-|+....
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~  110 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLD  110 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCchh
Confidence            5889999999999999999998 4899999999999999888864221       122222     25899999999887


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       111 ~~~~  114 (176)
T d2jhfa2         111 TMVT  114 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00057  Score=49.82  Aligned_cols=81  Identities=20%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHC-CCeE-EEEcCCchh-H-HH------HHHCCCcccCCHHHHhhcCceEEEccCChHH
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRN-GFKV-TVWNRTLSK-C-DE------LVAHGATVGGSPAEVIKKCTITIGMLADPAA   69 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~-g~~V-~~~~r~~~~-~-~~------l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~   69 (257)
                      |||+|+|+ |.||..+++.+.+. +.++ ..++|.... . +.      ....++....++++..+.+|+||=.+.....
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~p~~~   84 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGT   84 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSCHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEeccHHHH
Confidence            69999995 99999999998875 5564 445664321 1 01      1123566777888888899999877665544


Q ss_pred             HHH--HHHhcCCcE
Q 025163           70 ALS--AITSKGGHF   81 (257)
Q Consensus        70 ~~~--~~~~~g~~~   81 (257)
                      .+.  .....+..+
T Consensus        85 ~~~~~~a~~~~~~~   98 (162)
T d1diha1          85 LNHLAFCRQHGKGM   98 (162)
T ss_dssp             HHHHHHHHHTTCEE
T ss_pred             HHHHHHHHhcccee
Confidence            443  334455544

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.0015  Score=52.91  Aligned_cols=66  Identities=24%  Similarity=0.376  Sum_probs=47.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHC-CCc-----ccC--CHHH-HhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GAT-----VGG--SPAE-VIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~-g~~-----~~~--~~~~-~~~~~dvii~~v~~   66 (257)
                      |||.|.|+ |.+|+.+++.|++.|| +|++.|+......++.+. ++.     +..  +..+ +.+++|+||-+...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~   77 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI   77 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCcccccccc
Confidence            99999965 9999999999999996 799998876665555432 211     111  2233 56789999987643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.62  E-value=0.0013  Score=45.24  Aligned_cols=33  Identities=27%  Similarity=0.445  Sum_probs=30.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++.|||.|.+|.-+|..|++.|.+|+++.+++.
T Consensus        24 ~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          24 KLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHHHHcCCceEEEEeecc
Confidence            799999999999999999999999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.62  E-value=0.00093  Score=54.05  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=31.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +||.|||+|..|...|..|+++|++|++++++..
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            5899999999999999999999999999998643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.0014  Score=45.49  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=30.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ++.|||.|.+|..+|..|.+.|.+|+++.|++
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             EEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            68999999999999999999999999999864

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.58  E-value=0.00081  Score=53.28  Aligned_cols=33  Identities=21%  Similarity=0.379  Sum_probs=30.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|..|..+|..|.++|++|++++++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            399999999999999999999999999999764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.58  E-value=0.00099  Score=51.19  Aligned_cols=33  Identities=21%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~   33 (257)
                      +||.|||+|.-|...|..|.++|+ +|+++++++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            589999999999999999999995 799999864

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.58  E-value=0.0021  Score=47.01  Aligned_cols=71  Identities=17%  Similarity=0.154  Sum_probs=54.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc----CCH-HHHh-----hcCceEEEccCChHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG----GSP-AEVI-----KKCTITIGMLADPAAA   70 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~----~~~-~~~~-----~~~dvii~~v~~~~~~   70 (257)
                      +|.|+|+|.+|...++.+...|. .|++.++++++++.+++.|....    .+. ++..     ...|++|-|+......
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~  114 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATV  114 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHH
T ss_pred             EEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchHH
Confidence            47899999999999998887774 68888999999999988876421    122 2222     2489999999988766


Q ss_pred             HH
Q 025163           71 LS   72 (257)
Q Consensus        71 ~~   72 (257)
                      +.
T Consensus       115 ~~  116 (172)
T d1h2ba2         115 DY  116 (172)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.57  E-value=0.0014  Score=45.25  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|.|||.|.+|..+|..|.+.|++|+++++.+
T Consensus        32 ~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          32 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            69999999999999999999999999998864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.56  E-value=0.0016  Score=50.98  Aligned_cols=40  Identities=23%  Similarity=0.277  Sum_probs=35.2

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      ||++|  |.+.+|.++|..|++.|++|.+++|++++++++.+
T Consensus         3 KValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   44 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLK   44 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            78888  66889999999999999999999999988876654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.56  E-value=0.0017  Score=50.80  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=35.4

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      .||++|  |.+.+|.++|..|++.|++|.+.+|++++++++.+
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   43 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVAS   43 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            478877  55789999999999999999999999988876653

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.55  E-value=0.0011  Score=52.10  Aligned_cols=33  Identities=30%  Similarity=0.467  Sum_probs=31.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .||.|||+|.-|..-|..|+++|++|+++++++
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            489999999999999999999999999999864

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.033  Score=38.71  Aligned_cols=105  Identities=10%  Similarity=0.070  Sum_probs=60.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHh-hcCceEEEccCChHHHHH--HHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALS--AIT   75 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~-g~~V~-~~~r~~~~~~~l~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~--~~~   75 (257)
                      ||+|+| .|.||..+++.+.+. ++++. .+|+..               ++.+.. .++|+||=.+.+....+.  ...
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~---------------~~~~~~~~~~DvvIDFS~p~~~~~~~~~~~   65 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD---------------PLSLLTDGNTEVVIDFTHPDVVMGNLEFLI   65 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC---------------CTHHHHTTTCSEEEECCCTTTHHHHHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC---------------chhhhccccCCEEEEcccHHHHHHHHHHHH
Confidence            799999 599999999987764 56644 356532               112222 468999887765555444  444


Q ss_pred             hcCCcEEeccccCCccccccCcEEEEecCChhhHHHHHHHHH-HhcCCeEEeCC--CChHHHHHH
Q 025163           76 SKGGHFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALN-VIGKKAFFLGE--VGNGAKMKL  137 (257)
Q Consensus        76 ~~g~~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~-~~~~~~~~~g~--~g~a~~~kl  137 (257)
                      ..|+.++-+.                .|-+++..+.+++.+. .-...+++.++  +|...+.++
T Consensus        66 ~~~~~~ViGT----------------TG~~~~~~~~l~~~~~~~~~ipil~apNfSlGvnll~~l  114 (135)
T d1yl7a1          66 DNGIHAVVGT----------------TGFTAERFQQVESWLVAKPNTSVLIAPNFTSFVPGVLLA  114 (135)
T ss_dssp             HTTCEEEECC----------------CCCCHHHHHHHHHHHHSCTTCEEEECSCCGGGHHHHHHH
T ss_pred             hcCCCEEEec----------------cccchhHHHHHHHHHHhcCCCCEEEcCCccHHHHHHHHH
Confidence            5555432211                0114555666666543 23344667776  444444443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.50  E-value=0.00096  Score=53.38  Aligned_cols=32  Identities=28%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ||.|||+|..|...|..|+++|++|+++++++
T Consensus        32 kV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          32 HVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             EEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            79999999999999999999999999999864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0038  Score=45.22  Aligned_cols=117  Identities=20%  Similarity=0.319  Sum_probs=74.6

Q ss_pred             CeEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCC
Q 025163            1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGG   79 (257)
Q Consensus         1 mkI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~   79 (257)
                      .+|.|||-+. +|.+++..|.+.|..|++++...              .++.+..+++|+||.++..+.......-..|.
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t--------------~~l~~~~~~ADivI~a~G~p~~i~~~~vk~g~  103 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPGFIPGDWIKEGA  103 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTTCBCTTTSCTTC
T ss_pred             ceEEEEeccccccHHHHHHHHHhhcccccccccc--------------chhHHHHhhhhHhhhhccCcccccccccCCCc
Confidence            3689999877 99999999999999999997643              25667778999999999876554443334677


Q ss_pred             cEEeccccCCccccccCcEEEEecCChhhHHHHHHHHHHhcCCeEEeCCCChHHHHHHHHHHHH
Q 025163           80 HFLEAPVSGSKQPAETGQLVILSAGEKALYDEAISALNVIGKKAFFLGEVGNGAKMKLVVNMIM  143 (257)
Q Consensus        80 ~~~~~pv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~kl~~n~~~  143 (257)
                      ..+|..+...    ..+.   ++ ||.+ ++.+++..+.+..   .-|.+|.-...-+..|++.
T Consensus       104 vvIDvGi~~~----~~~~---~~-Gdvd-~~~v~~~a~~~TP---vPGGVGP~Tva~L~~N~v~  155 (166)
T d1b0aa1         104 IVIDVGINRL----ENGK---VV-GDVV-FEDAAKRASYITP---VPGGVGPMTVATLIENTLQ  155 (166)
T ss_dssp             EEEECCCEEC----TTSC---EE-CSBC-HHHHHHHCSEECC---SSSSSHHHHHHHHHHHHHH
T ss_pred             EEEecCceec----CCCC---EE-eccc-cHhHHhheeEeCC---CCCcccHHHHHHHHHHHHH
Confidence            7888765432    1222   22 3322 2334443222221   2333566666667677653

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.47  E-value=0.0018  Score=45.36  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||.|||.|.+|..+|..|.+.|.+|+++++.+.
T Consensus        37 ~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          37 RLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             EEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            699999999999999999999999999998654

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.47  E-value=0.0012  Score=50.49  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCch
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~   34 (257)
                      +||+|||+|.-|..-|..|.++  ||+|++|++.+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            5899999999999999999875  789999998764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0022  Score=49.79  Aligned_cols=40  Identities=18%  Similarity=0.185  Sum_probs=34.9

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|+.++++.+.+
T Consensus         6 KvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   47 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAK   47 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence            67777  66889999999999999999999999988876654

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.41  E-value=0.0049  Score=44.92  Aligned_cols=71  Identities=18%  Similarity=0.177  Sum_probs=54.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCccc-------CCHHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVG-------GSPAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~-------~~~~~~~-----~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...++.+...|. .|++.++++++.+..++.|+...       .+..+..     ..+|++|-|+....
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~  110 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVK  110 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHH
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCHH
Confidence            57899999999999999998885 68878999999988888886432       1222222     35899999998877


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ..+.
T Consensus       111 ~~~~  114 (176)
T d2fzwa2         111 VMRA  114 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.40  E-value=0.0018  Score=50.56  Aligned_cols=40  Identities=25%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus        11 KvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            67777  55889999999999999999999999998876654

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.39  E-value=0.0017  Score=44.27  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+.|||.|..|..+|..|.+.|++|+++.+.+.
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            689999999999999999999999999988654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.35  E-value=0.0017  Score=50.43  Aligned_cols=34  Identities=15%  Similarity=0.070  Sum_probs=30.5

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||.+|  |.+.+|.++|+.|++.|++|.+.+|+.+
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            898888  5688999999999999999999998754

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0027  Score=49.27  Aligned_cols=40  Identities=18%  Similarity=0.220  Sum_probs=35.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            56777  56889999999999999999999999998887764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.32  E-value=0.0088  Score=41.79  Aligned_cols=70  Identities=16%  Similarity=0.225  Sum_probs=51.9

Q ss_pred             eEEEEcC----------ChhHHHHHHHHHHCCCeEEEEcCCchh-------HHHHHH----CCCcccCCHHHHhhcCceE
Q 025163            2 EVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSK-------CDELVA----HGATVGGSPAEVIKKCTIT   60 (257)
Q Consensus         2 kI~iIG~----------G~mG~~la~~L~~~g~~V~~~~r~~~~-------~~~l~~----~g~~~~~~~~~~~~~~dvi   60 (257)
                      ||+|+|+          ++-...++..|.+.|.+|.+||..-+.       .+.+..    .+.....++.++++++|+|
T Consensus        15 kI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~i   94 (136)
T d1mv8a3          15 KVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVL   94 (136)
T ss_dssp             EEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEE
T ss_pred             EEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEE
Confidence            6888886          457888999999999999999953221       111111    1345678999999999999


Q ss_pred             EEccCChHHHH
Q 025163           61 IGMLADPAAAL   71 (257)
Q Consensus        61 i~~v~~~~~~~   71 (257)
                      |++++.+.-.+
T Consensus        95 vi~t~h~~f~~  105 (136)
T d1mv8a3          95 VLGNGDELFVD  105 (136)
T ss_dssp             EECSCCGGGHH
T ss_pred             EEEeCCHHHHH
Confidence            99999886543

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.003  Score=46.09  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=58.5

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCChHHHHHHHHhcCCc
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSAITSKGGH   80 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~~~~~~g~~   80 (257)
                      +|.|||-+. +|.+++..|.+.|..|++++.+..              ++.+..+++|+++.++..+.......-..|..
T Consensus        41 ~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~--------------~l~~~~~~aDivi~a~G~~~~i~~~~vk~g~i  106 (170)
T d1a4ia1          41 HAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA--------------HLDEEVNKGDILVVATGQPEMVKGEWIKPGAI  106 (170)
T ss_dssp             EEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS--------------SHHHHHTTCSEEEECCCCTTCBCGGGSCTTCE
T ss_pred             eEEEEecCCccchHHHHHHHhccCceEEEecccc--------------cHHHHHhhccchhhccccccccccccccCCCe
Confidence            689999965 999999999999999999987432              45566789999999998876655555567888


Q ss_pred             EEeccccCC
Q 025163           81 FLEAPVSGS   89 (257)
Q Consensus        81 ~~~~pv~~~   89 (257)
                      .+|..+...
T Consensus       107 viDvgi~~~  115 (170)
T d1a4ia1         107 VIDCGINYV  115 (170)
T ss_dssp             EEECCCBC-
T ss_pred             EeccCcccc
Confidence            888876543

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0029  Score=49.09  Aligned_cols=40  Identities=18%  Similarity=0.308  Sum_probs=34.4

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+| | .+.+|..+|..|+++|.+|.+++|++++++++.+
T Consensus         8 kv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~   49 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAA   49 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666 4 4679999999999999999999999999887764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.29  E-value=0.0029  Score=49.68  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|..|++.|++|.+.+|+.++++++.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQ   47 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            67777  67999999999999999999999999988876654

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.28  E-value=0.003  Score=49.02  Aligned_cols=40  Identities=20%  Similarity=0.225  Sum_probs=34.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~   48 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAA   48 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  55889999999999999999999999998887765

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.003  Score=49.42  Aligned_cols=40  Identities=30%  Similarity=0.507  Sum_probs=34.7

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|++++|++++++++.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~   52 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAA   52 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  66999999999999999999999999998887654

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.27  E-value=0.0039  Score=48.31  Aligned_cols=66  Identities=17%  Similarity=0.200  Sum_probs=44.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEc-CC----------chhHHHH------------HH-CCCcccCCHHHHh-hc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWN-RT----------LSKCDEL------------VA-HGATVGGSPAEVI-KK   56 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~-r~----------~~~~~~l------------~~-~g~~~~~~~~~~~-~~   56 (257)
                      +|.|-|.|++|..+|+.|.+.|..|+.++ .+          .+.+.+.            .. .+.....+++++. .+
T Consensus        33 ~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  112 (242)
T d1v9la1          33 TVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLD  112 (242)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcchhcccc
Confidence            78999999999999999999999987654 22          1222221            11 1334444455544 48


Q ss_pred             CceEEEccCCh
Q 025163           57 CTITIGMLADP   67 (257)
Q Consensus        57 ~dvii~~v~~~   67 (257)
                      ||+++-|-...
T Consensus       113 ~DIliPcA~~~  123 (242)
T d1v9la1         113 VDIFVPAAIEN  123 (242)
T ss_dssp             CSEEEECSCSS
T ss_pred             ccEEeecchhc
Confidence            99999886554

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.27  E-value=0.0013  Score=51.58  Aligned_cols=33  Identities=21%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |||.|.|+ |.+|..++..|.++||+|+..+|+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            89999987 9999999999999999999999864

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.0045  Score=45.16  Aligned_cols=65  Identities=20%  Similarity=0.130  Sum_probs=51.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh------hcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI------KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~------~~~dvii~~v~~   66 (257)
                      +|.|.|+ |.+|....+.+...|.+|+..++++++.+.+++.|+...-+..+..      .++|+||-|+..
T Consensus        30 ~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~  101 (171)
T d1iz0a2          30 KVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK  101 (171)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT
T ss_pred             EEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch
Confidence            5788885 9999999999999999999999999999999998875443333221      458999988764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0032  Score=48.87  Aligned_cols=41  Identities=22%  Similarity=0.225  Sum_probs=35.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         8 K~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~   50 (244)
T d1pr9a_           8 RRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRE   50 (244)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHh
Confidence            44555  558899999999999999999999999998887654

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.24  E-value=0.0017  Score=46.83  Aligned_cols=84  Identities=14%  Similarity=0.152  Sum_probs=52.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCC---eEEEEcCCchhHHHHHHC--CCcccCCHHHHhhcCceEEEccCChHHHHH--H
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGF---KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALS--A   73 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~l~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~--~   73 (257)
                      ||+|||+ |..|..|.+.|.++.+   ++..+.-+...-+.+...  ........++...+.|++++|+|.....+.  .
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~s~~~~~~   82 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSSTSAKYAPY   82 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHHHHHHHHH
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccchhhHHhh
Confidence            7999998 9999999999998865   344443222211111111  111222333445688999999997766554  4


Q ss_pred             HHhcCCcEEecc
Q 025163           74 ITSKGGHFLEAP   85 (257)
Q Consensus        74 ~~~~g~~~~~~p   85 (257)
                      ....|..++|..
T Consensus        83 ~~~~~~~VIDlS   94 (154)
T d2gz1a1          83 AVKAGVVVVDNT   94 (154)
T ss_dssp             HHHTTCEEEECS
T ss_pred             hccccceehhcC
Confidence            556788888843

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=96.24  E-value=0.0039  Score=50.65  Aligned_cols=66  Identities=15%  Similarity=0.123  Sum_probs=47.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHH--HHHH-CCCcc-----cCC---HHHHhhcCceEEEccCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD--ELVA-HGATV-----GGS---PAEVIKKCTITIGMLAD   66 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~--~l~~-~g~~~-----~~~---~~~~~~~~dvii~~v~~   66 (257)
                      ++|.|+|+ |.+|..++..|.++||+|++..|++++..  .+.. .|+.+     .+.   ...+...+|.++...+.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            36999975 99999999999999999999999877543  3333 24332     111   33456788888877654

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.23  E-value=0.0033  Score=49.27  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=33.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45656  45789999999999999999999999988876654

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.002  Score=50.09  Aligned_cols=41  Identities=29%  Similarity=0.273  Sum_probs=35.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|++.+|++++++++.+.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~   49 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKY   49 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            56777  779999999999999999999999999887766553

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.22  E-value=0.0033  Score=49.18  Aligned_cols=40  Identities=18%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         9 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLT   50 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666  55789999999999999999999999998876654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0035  Score=48.86  Aligned_cols=41  Identities=20%  Similarity=0.252  Sum_probs=35.5

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~   49 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQE   49 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            45555  558999999999999999999999999998887764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=96.20  E-value=0.0062  Score=49.32  Aligned_cols=63  Identities=29%  Similarity=0.308  Sum_probs=46.9

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC------C---------CcccCCHHHHhhcCceEEEcc
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------G---------ATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~------g---------~~~~~~~~~~~~~~dvii~~v   64 (257)
                      +|.|.|. |.+|+.++..|.++|++|.+..|+.++...+...      .         +.-..+..+++.++|.|+-+.
T Consensus        13 ~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a   91 (342)
T d1y1pa1          13 LVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIA   91 (342)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhc
Confidence            6888855 9999999999999999999999998876665431      0         111224556778899888654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=96.19  E-value=0.0023  Score=50.90  Aligned_cols=33  Identities=24%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~   33 (257)
                      .+|.|||+|.+|.+.|..|+++|. +|+++++++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            379999999999999999999995 799999863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.18  E-value=0.013  Score=42.46  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=55.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccCC-------HHHHh-----hcCceEEEccCChH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGS-------PAEVI-----KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~~   68 (257)
                      +|.|+|+|.+|...+..+...|- +|++.++++++++..++.|+...-+       ..+..     ...|++|-++....
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~G~~~  110 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVG  110 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHH
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeecCCHH
Confidence            58899999999999999988875 6999999999999999998643211       12222     25899999998876


Q ss_pred             HHHH
Q 025163           69 AALS   72 (257)
Q Consensus        69 ~~~~   72 (257)
                      ....
T Consensus       111 ~~~~  114 (175)
T d1cdoa2         111 VMRN  114 (175)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6555

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.17  E-value=0.0037  Score=42.70  Aligned_cols=33  Identities=15%  Similarity=0.051  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||.|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus        24 ~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          24 TVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            799999999999999999999999999988754

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.17  E-value=0.0037  Score=49.29  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=34.7

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~   47 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQ   47 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  56889999999999999999999999998877654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.15  E-value=0.0038  Score=48.63  Aligned_cols=40  Identities=23%  Similarity=0.309  Sum_probs=35.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         7 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56777  56889999999999999999999999998887764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.15  E-value=0.0036  Score=49.76  Aligned_cols=40  Identities=20%  Similarity=0.286  Sum_probs=35.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.|.+|.++|+.|++.|++|++.+|+.++++++.+
T Consensus        26 K~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~   67 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAE   67 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHH
Confidence            67777  78999999999999999999999999988766543

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.13  E-value=0.0042  Score=48.10  Aligned_cols=41  Identities=12%  Similarity=0.146  Sum_probs=34.9

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+| | .+.+|.++|+.|++.|++|.+++|++++++++.+.
T Consensus         6 K~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~   48 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEA   48 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45555 4 57899999999999999999999999998887653

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.12  E-value=0.0025  Score=47.55  Aligned_cols=33  Identities=21%  Similarity=0.171  Sum_probs=29.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~   33 (257)
                      |||.|||.|..|..+|..|.+.  +.+|++++|++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            9999999999999999999886  45799998754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.12  E-value=0.0026  Score=40.03  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|+|||.|..|.-++..-.+-|++|.++|.+++
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~   35 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE   35 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence            599999999999999999999999999998654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=96.11  E-value=0.0042  Score=48.45  Aligned_cols=40  Identities=25%  Similarity=0.297  Sum_probs=34.9

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         7 K~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~   48 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAA   48 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  56789999999999999999999999998887765

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0069  Score=46.83  Aligned_cols=87  Identities=16%  Similarity=0.156  Sum_probs=57.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHHHHHH----C--CCcc--------c
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCDELVA----H--GATV--------G   47 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~~l~~----~--g~~~--------~   47 (257)
                      ||.|||+|.+|+.++..|++.|. +++++|.+.=                   |++.+++    .  .+.+        .
T Consensus        32 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~~~~~  111 (247)
T d1jw9b_          32 RVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNALLDD  111 (247)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECSCCCH
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhhhhhh
Confidence            79999999999999999999996 7999875421                   2222222    1  1111        1


Q ss_pred             CCHHHHhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           48 GSPAEVIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      ....+.....|+++.|+.+......   .....++.++.+.+.+
T Consensus       112 ~~~~~~~~~~divid~~d~~~~~~~in~~~~~~~ip~i~g~~~~  155 (247)
T d1jw9b_         112 AELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIR  155 (247)
T ss_dssp             HHHHHHHHTSSEEEECCSSHHHHHHHHHHHHHHTCCEEEEEEEB
T ss_pred             ccccccccccceeeeccchhhhhhhHHHHHHHhCCCcccccccc
Confidence            1233445788999999887655433   4446688888765543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0038  Score=48.75  Aligned_cols=40  Identities=18%  Similarity=0.280  Sum_probs=34.9

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus        12 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~   53 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVD   53 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            57777  66899999999999999999999999988876654

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.09  E-value=0.0041  Score=49.10  Aligned_cols=40  Identities=25%  Similarity=0.426  Sum_probs=34.4

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|..|++.|++|.+.+|++++++++.+
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELET   47 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            35666  56899999999999999999999999998877654

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.08  E-value=0.0044  Score=48.38  Aligned_cols=41  Identities=10%  Similarity=0.090  Sum_probs=34.3

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~   48 (254)
T d1hdca_           6 KTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARE   48 (254)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            44555  557899999999999999999999999988877654

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0055  Score=51.47  Aligned_cols=71  Identities=20%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCch-------------------hHH----HHHHC--CC-------ccc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLS-------------------KCD----ELVAH--GA-------TVG   47 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~-------------------~~~----~l~~~--g~-------~~~   47 (257)
                      +||.|||+|.+|..++++|+..|. +++++|.+.=                   |++    .+++.  .+       ...
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~  117 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQ  117 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECSCGG
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeecccc
Confidence            489999999999999999999997 7999986531                   122    12111  11       122


Q ss_pred             CCHHHHhhcCceEEEccCChHHHH
Q 025163           48 GSPAEVIKKCTITIGMLADPAAAL   71 (257)
Q Consensus        48 ~~~~~~~~~~dvii~~v~~~~~~~   71 (257)
                      +...+.+++.|+||.|+-+.....
T Consensus       118 ~~~~~~~~~~DlVi~~~Dn~~aR~  141 (426)
T d1yovb1         118 DFNDTFYRQFHIIVCGLDSIIARR  141 (426)
T ss_dssp             GBCHHHHTTCSEEEECCSCHHHHH
T ss_pred             chHHHHHHhcchheeccCcHHHHH
Confidence            233567789999999998765544

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.07  E-value=0.0043  Score=48.75  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=34.9

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         7 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  56889999999999999999999999998887765

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.05  E-value=0.004  Score=48.58  Aligned_cols=40  Identities=18%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++++++.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  55999999999999999999999999998887765

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.05  E-value=0.0046  Score=48.14  Aligned_cols=39  Identities=28%  Similarity=0.388  Sum_probs=33.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.+++++..
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~   46 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAA   46 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence            45655  5588999999999999999999999998877654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.03  E-value=0.0032  Score=43.54  Aligned_cols=33  Identities=18%  Similarity=0.215  Sum_probs=30.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ++.|||.|.+|.-+|..|.+.|.+|+++.+.+.
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            689999999999999999999999999988653

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=95.99  E-value=0.005  Score=48.13  Aligned_cols=40  Identities=20%  Similarity=0.267  Sum_probs=34.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|..|++.|++|.+.+|+++++++..+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~   46 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKA   46 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  55789999999999999999999999988876644

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.99  E-value=0.0051  Score=48.07  Aligned_cols=39  Identities=26%  Similarity=0.196  Sum_probs=32.7

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +-|.| .+.+|.++|..|++.|++|.+.+|++++++++.+
T Consensus         9 alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~   48 (258)
T d1ae1a_           9 ALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLE   48 (258)
T ss_dssp             EEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44445 6889999999999999999999999988776544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.98  E-value=0.005  Score=48.53  Aligned_cols=40  Identities=15%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|++++++++.+
T Consensus         5 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            55666  56889999999999999999999999988876654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.96  E-value=0.0035  Score=50.75  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC--CeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g--~~V~~~~r~~~   34 (257)
                      ||+|||+|.-|.+.|..|++.|  ++|++++|+.+
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            6999999999999999998876  69999999754

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.95  E-value=0.0054  Score=47.42  Aligned_cols=41  Identities=24%  Similarity=0.184  Sum_probs=34.5

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|++++++++.++
T Consensus         6 K~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~   48 (242)
T d1cyda_           6 LRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKE   48 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence            44444 5 47899999999999999999999999998887654

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.94  E-value=0.0054  Score=47.92  Aligned_cols=40  Identities=18%  Similarity=0.199  Sum_probs=34.3

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+++|++++++++.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLS   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            45666  56889999999999999999999999988877654

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0056  Score=47.65  Aligned_cols=40  Identities=25%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|.+|.+.+|+.+++++..+
T Consensus         4 KvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  55889999999999999999999999998876654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0038  Score=49.62  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      ||.|||+|.-|..-|..|.++|++|+++..+
T Consensus         7 kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           7 KVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            7999999999999999999999999999875

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.90  E-value=0.0062  Score=47.04  Aligned_cols=41  Identities=20%  Similarity=0.152  Sum_probs=34.2

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++++++.++
T Consensus         6 K~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~   48 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAA   48 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            44555  457799999999999999999999999988777654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.88  E-value=0.016  Score=43.13  Aligned_cols=64  Identities=19%  Similarity=0.160  Sum_probs=48.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHHHHHCCCcccC-----CHHHHh------hcCceEEEccC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGG-----SPAEVI------KKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~l~~~g~~~~~-----~~~~~~------~~~dvii~~v~   65 (257)
                      +|.|+|+|.+|...+..+...|. .|++.|+++++++..++.|+....     ++.+.+      ..+|++|-|+.
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            58899999999888888777776 788899999999999888864332     222222      24788888875

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0057  Score=48.82  Aligned_cols=40  Identities=30%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|+.++++...+
T Consensus        13 KvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~   54 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAAD   54 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            56666  56889999999999999999999999988776554

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.88  E-value=0.0041  Score=50.78  Aligned_cols=64  Identities=11%  Similarity=0.090  Sum_probs=42.2

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC-----cc--cCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-----TV--GGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~-----~~--~~~~~~~~~~~dvii~~v   64 (257)
                      |||.|.| .|.+|+.++..|.++||+|+++|+....-........     ..  .....++.++.|.|+-+.
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            8999996 6999999999999999999999875332110000111     11  112334456889888655

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=95.86  E-value=0.0041  Score=49.73  Aligned_cols=33  Identities=24%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|.-|.++|..|.+.|++|++++++++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCCCEEEEEcCCC
Confidence            589999999999999999999999999999765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.85  E-value=0.0047  Score=47.28  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||.|||.|.-|...|..|++.|++|++++++++
T Consensus        51 ~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          51 SVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             eEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            799999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.85  E-value=0.0034  Score=50.12  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|.|||+|..|...|..|+++|++|+++++++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999988643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.019  Score=41.61  Aligned_cols=66  Identities=26%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHHh------hcCceEEEccCCh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEVI------KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~-----~~~~~~~------~~~dvii~~v~~~   67 (257)
                      +|.|+|+ |.+|....+.....|.+|++.++++++.+.+++.|+...     .+..+.+      +..|+++-|+...
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~~  108 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLANV  108 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHHH
T ss_pred             EEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecccHH
Confidence            5889995 999999999999999999999999999998888887422     2333332      2479999888743

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.78  E-value=0.0069  Score=47.50  Aligned_cols=40  Identities=20%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+| | .+.+|.++|+.|++.|++|++.+|+.++++++.+
T Consensus        15 K~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            44555 4 5779999999999999999999999999887754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0048  Score=46.69  Aligned_cols=31  Identities=32%  Similarity=0.219  Sum_probs=29.5

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +.|||+|.-|...|..|+++|++|+++++++
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999975

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.71  E-value=0.14  Score=39.02  Aligned_cols=66  Identities=15%  Similarity=0.167  Sum_probs=42.2

Q ss_pred             CeEEEEcCChhHHHHHHHHHH-CCCeEEEE-cCC----------chhHHHHHHC--------CCcccCCHHHHh-hcCce
Q 025163            1 MEVGFLGLGIMGKAISMNLLR-NGFKVTVW-NRT----------LSKCDELVAH--------GATVGGSPAEVI-KKCTI   59 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~-~g~~V~~~-~r~----------~~~~~~l~~~--------g~~~~~~~~~~~-~~~dv   59 (257)
                      ++|.|-|.|++|..+|+.|.+ .|..|+.. |.+          .+.+.+....        |.... +.+++. .+||+
T Consensus        33 ~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~DI  111 (239)
T d1gtma1          33 KTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNI-TNEELLELEVDV  111 (239)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEE-CHHHHHHSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeee-cccccccccccE
Confidence            479999999999999999975 58876554 432          1233332221        22222 455554 58999


Q ss_pred             EEEccCCh
Q 025163           60 TIGMLADP   67 (257)
Q Consensus        60 ii~~v~~~   67 (257)
                      ++-|-...
T Consensus       112 l~PcA~~~  119 (239)
T d1gtma1         112 LAPAAIEE  119 (239)
T ss_dssp             EEECSCSC
T ss_pred             Eeeccccc
Confidence            99886654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=95.71  E-value=0.0069  Score=47.28  Aligned_cols=40  Identities=20%  Similarity=0.219  Sum_probs=33.6

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.++++++.+
T Consensus        10 K~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~   51 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTE   51 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence            55666  55779999999999999999999999888776543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.69  E-value=0.0053  Score=47.13  Aligned_cols=33  Identities=18%  Similarity=0.200  Sum_probs=30.7

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      |.|||+|..|...|..|+++|++|.++++++.-
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~   37 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKL   37 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            899999999999999999999999999987653

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.68  E-value=0.0028  Score=48.30  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=30.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-------eEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-------KVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-------~V~~~~r~~~   34 (257)
                      ||+|||+|.-|.+.|..|.++||       +|++|++++.
T Consensus         4 ~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           4 YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            89999999999999999999884       7999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0072  Score=46.16  Aligned_cols=67  Identities=22%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCC--CeEEEEcCCchhHHHHHHCCC-------cccCCHHHHhhcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGA-------TVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g--~~V~~~~r~~~~~~~l~~~g~-------~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +||.|.|+ |.+|..+.+.|.++|  ++|++++|++.....-....+       .-..+..++.+++|++|.|+...
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeeccccccccccccccccccccccccc
Confidence            36888865 999999999999998  489999997654332111111       11234556678899999987543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.62  E-value=0.0029  Score=43.87  Aligned_cols=78  Identities=15%  Similarity=0.227  Sum_probs=50.5

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CCCeEEE-EcCCchhHHHHHHCCCccc--CCHHHHh-hcCceEEEccCChHHHHH--HH
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NGFKVTV-WNRTLSKCDELVAHGATVG--GSPAEVI-KKCTITIGMLADPAAALS--AI   74 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g~~V~~-~~r~~~~~~~l~~~g~~~~--~~~~~~~-~~~dvii~~v~~~~~~~~--~~   74 (257)
                      ++.|+|+|.+|..+++.+.. .++++.. +|-++++..+.. .|+++.  +.+.+.. +..++.++++|.....+.  .+
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I-~Gi~V~~~~~l~~~~~~~i~iai~~i~~~~~~~I~d~l   83 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPV-RGGVIEHVDLLPQRVPGRIEIALLTVPREAAQKAADLL   83 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEE-TTEEEEEGGGHHHHSTTTCCEEEECSCHHHHHHHHHHH
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEE-CCEEEecHHHHHHHHhhcccEEEEeCCHHHHHHHHHHH
Confidence            68999999999999987753 4677555 487776533221 144443  2333333 357888889987655443  56


Q ss_pred             HhcCCc
Q 025163           75 TSKGGH   80 (257)
Q Consensus        75 ~~~g~~   80 (257)
                      ...|+.
T Consensus        84 ~~~gIk   89 (126)
T d2dt5a2          84 VAAGIK   89 (126)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            667775

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0066  Score=47.73  Aligned_cols=41  Identities=24%  Similarity=0.281  Sum_probs=35.8

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHC-CCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~-g~~V~~~~r~~~~~~~l~~   41 (257)
                      |+|++|  |.+.+|.++|+.|++. |+.|++++|+++++++..+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~   46 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQ   46 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            689999  7799999999999975 8999999999998876544

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0088  Score=46.55  Aligned_cols=40  Identities=28%  Similarity=0.244  Sum_probs=34.6

Q ss_pred             eEEEE--cCChhHHHHHHHHHH---CCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLR---NGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~---~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |++||  |.+.+|.++|+.|++   +|++|++++|++++++++.+
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence            78888  457899999999986   69999999999998887754

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.57  E-value=0.0064  Score=47.55  Aligned_cols=31  Identities=29%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      .|.|||.|.+|...|..|+++|++|+++++.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3789999999999999999999999999985

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.40  E-value=0.01  Score=45.52  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=30.9

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l   39 (257)
                      |+.+| | .+.+|.++|+.|++.|++|.+.+|+++.+++.
T Consensus         5 K~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           5 KGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS   44 (234)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhc
Confidence            34444 5 58899999999999999999999998766543

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.01  Score=42.11  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +++.|||.|.+|..-++.|.++|.+|++++..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999999999999999999643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0081  Score=48.05  Aligned_cols=32  Identities=31%  Similarity=0.354  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||+|.-|..-|..|+++|++|++++++.
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            37899999999999999999999999998754

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=95.21  E-value=0.018  Score=35.89  Aligned_cols=42  Identities=24%  Similarity=0.279  Sum_probs=36.3

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG   43 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g   43 (257)
                      +|.|.|. |.+|....+.+...|++|+...+++++.+.+++.|
T Consensus        34 ~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          34 EIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             cEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            4666654 99999999998999999999999999999888765

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=95.17  E-value=0.016  Score=45.14  Aligned_cols=39  Identities=13%  Similarity=0.170  Sum_probs=31.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELV   40 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l~   40 (257)
                      |+.+|  |.+.+|.++|..|++.|++|.+.+|+. +.++++.
T Consensus         5 K~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~   46 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHH
Confidence            57777  668899999999999999999999974 4555443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=95.17  E-value=0.0073  Score=48.86  Aligned_cols=37  Identities=24%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHH
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~   37 (257)
                      +||-|.| .|.+|+.++..|.++|++|.+++|+..+..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~   46 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVP   46 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccH
Confidence            5899997 699999999999999999999999876543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.13  E-value=0.011  Score=42.65  Aligned_cols=33  Identities=18%  Similarity=0.116  Sum_probs=29.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC--eEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~--~V~~~~r~~   33 (257)
                      .||.|||.|..|..+|..|.+.++  +|+++++++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            489999999999999999999875  789998876

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.073  Score=45.69  Aligned_cols=88  Identities=17%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCCchhHHH-----------------------HHHCC--Cc---ccCCHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE-----------------------LVAHG--AT---VGGSPA   51 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~~~~~~~-----------------------l~~~g--~~---~~~~~~   51 (257)
                      .||.|||+|.+|..++++|+..|. .++++|.+.=....                       +.+.+  +.   ...++.
T Consensus        26 s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~~~~  105 (529)
T d1yova1          26 AHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPE  105 (529)
T ss_dssp             CEEEECCCSHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESSCHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcCCch
Confidence            379999999999999999999995 79998765322222                       22221  11   223443


Q ss_pred             H-------HhhcCceEEEccCChHHHHH---HHHhcCCcEEeccccC
Q 025163           52 E-------VIKKCTITIGMLADPAAALS---AITSKGGHFLEAPVSG   88 (257)
Q Consensus        52 ~-------~~~~~dvii~~v~~~~~~~~---~~~~~g~~~~~~pv~~   88 (257)
                      +       ..++.|+|+.|..+......   .....++.++.+...|
T Consensus       106 ~~~~~~~~~~~~~dvVv~~~~~~~~~~~l~~~c~~~~ip~i~~~~~G  152 (529)
T d1yova1         106 NLLDNDPSFFCRFTVVVATQLPESTSLRLADVLWNSQIPLLICRTYG  152 (529)
T ss_dssp             HHHHSCGGGGGGCSEEEEESCCHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             hhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccC
Confidence            3       34678999988776655433   5556677777755433

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=95.11  E-value=0.017  Score=44.70  Aligned_cols=38  Identities=18%  Similarity=0.204  Sum_probs=31.7

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l   39 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+++..+..
T Consensus         6 K~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~   45 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVA   45 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            45556  579999999999999999999999998765533

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.11  E-value=0.028  Score=44.31  Aligned_cols=66  Identities=17%  Similarity=0.189  Sum_probs=44.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEc-----------CCchhHHHHHHCCCccc------CCHHHHh-hcCceEEEc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWN-----------RTLSKCDELVAHGATVG------GSPAEVI-KKCTITIGM   63 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~-----------r~~~~~~~l~~~g~~~~------~~~~~~~-~~~dvii~~   63 (257)
                      +|.|-|.|++|...|+.|.+.|..|+.++           .+.+.+.++....-...      .+..++. .+||+++-|
T Consensus        38 tvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~DIliPa  117 (293)
T d1hwxa1          38 TFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPA  117 (293)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCCCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCCccEEeec
Confidence            68999999999999999999999877664           34455555554321111      1222333 489999888


Q ss_pred             cCCh
Q 025163           64 LADP   67 (257)
Q Consensus        64 v~~~   67 (257)
                      --..
T Consensus       118 A~~~  121 (293)
T d1hwxa1         118 ASEK  121 (293)
T ss_dssp             SSSS
T ss_pred             cccc
Confidence            6544

>d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.07  E-value=0.065  Score=42.34  Aligned_cols=118  Identities=14%  Similarity=0.196  Sum_probs=80.5

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcCC-CchhhhccCCcccCCC-------CCC
Q 025163          130 GNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS------GLDPRTLLDVLDLGGI-ANPMFKGKGPTMLQSN-------YAP  195 (257)
Q Consensus       130 g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~------g~~~~~~~~~~~~~~~-~s~~~~~~~~~~~~~~-------~~~  195 (257)
                      .....++.+.|++....+.++.|.+.+.++.      +++..++.++++.|+. .|+++... ......+       .++
T Consensus       138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i-~~a~~~~~~l~nl~~~~  216 (297)
T d2pgda1         138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKI-KDAFDRNPGLQNLLLDD  216 (297)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHH-HHHHHHCTTCSCGGGSH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHH-HHHHHhCCCccchhhcH
Confidence            5677899999999999999999999998764      7889999999998864 34544321 1111111       111


Q ss_pred             Cc--ccchHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Q 025163          196 AF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  252 (257)
Q Consensus       196 ~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~  252 (257)
                      .+  .+.....+++.++..+-+.|+|+|.+......+.......    ....++...|+
T Consensus       217 ~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~~~----lp~~lIQAqRD  271 (297)
T d2pgda1         217 FFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRHAM----LPANLIQAQRD  271 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHCSS----CTHHHHHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhccCC----chhHHHHHHHH
Confidence            11  2333455678899999999999999999987665443221    23456655554

>d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: 6-phosphogluconate dehydrogenase (6PGD)
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.99  E-value=0.15  Score=40.23  Aligned_cols=121  Identities=12%  Similarity=0.231  Sum_probs=75.9

Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHhhcCCC-chhhhccCCcccCCC-----CCC
Q 025163          128 EVGNGAKMKLVVNMIMGCMMNTFSEGLVLAEKS------GLDPRTLLDVLDLGGIA-NPMFKGKGPTMLQSN-----YAP  195 (257)
Q Consensus       128 ~~g~a~~~kl~~n~~~~~~~~~~~E~~~l~~~~------g~~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~-----~~~  195 (257)
                      .......+|.+.|.+....+.+++|.+.+.++.      +++..++.++++.|+.. |.++..... ....+     ...
T Consensus       141 ~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~GCIIRS~LL~~i~~-a~~~~~~l~~l~~  219 (300)
T d1pgja1         141 KSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRAGCILQGYLLKPMTE-AFEKNPNISNLMC  219 (300)
T ss_dssp             CSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSSSSTTCBTTHHHHHH-HHHHCTTCSCTTG
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcCCceeeHHHHHHHHH-HhhcCCccchhhH
Confidence            356788899999999999999999999999764      68999999999988643 444432111 00111     011


Q ss_pred             Ccc--cchHHHHH-HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHh
Q 025163          196 AFP--LKHQQKDM-RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD  252 (257)
Q Consensus       196 ~~~--~~~~~kd~-~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~l~~~~~~  252 (257)
                      .|.  +.....+. +.+...+.+.|+|+|.+.+....+......   ......++...|+
T Consensus       220 ~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~~~---~l~~anLIQAqRD  276 (300)
T d1pgja1         220 AFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMFTP---TLKYGQLVSLQRD  276 (300)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTCS---CCTHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhcc---CCchhHHHHHHHh
Confidence            111  11111222 445556778899999999988766544221   2222356666554

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.98  E-value=0.043  Score=39.84  Aligned_cols=66  Identities=18%  Similarity=0.071  Sum_probs=51.1

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHh------hcCceEEEccCCh
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVI------KKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~------~~~dvii~~v~~~   67 (257)
                      +|.|.| +|.+|...++.+...|.+|.+..+++++.+.+++.|+..     ..+..+.+      ++.|++|-|+...
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~~  105 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAGE  105 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCTH
T ss_pred             EEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccch
Confidence            467777 499999999999999999999999999998888887542     12333333      3589999999864

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=94.92  E-value=0.013  Score=45.24  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=34.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      +|.|||+|..|...|..|+++|++|.++++++.--..+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~   44 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKIL   44 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceE
Confidence            489999999999999999999999999999876555443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.014  Score=47.40  Aligned_cols=32  Identities=28%  Similarity=0.411  Sum_probs=27.1

Q ss_pred             eEE-EEc-CChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVG-FLG-LGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~-iIG-~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ||. |.| +|.+|+.++..|.++||+|++++|.+
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            677 555 79999999999999999999999954

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=94.75  E-value=0.012  Score=47.24  Aligned_cols=33  Identities=21%  Similarity=0.315  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHH-----HCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLL-----RNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~-----~~g~~V~~~~r~~~   34 (257)
                      .|.|||+|..|..+|..|+     ++|++|++++|++.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            4889999999999999996     57999999998754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=94.73  E-value=0.0028  Score=42.55  Aligned_cols=32  Identities=9%  Similarity=-0.106  Sum_probs=26.4

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      ++|.|||.|+-|.-++..|++.+.+|++..|.
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            47999999999999999999887665555443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.64  E-value=0.013  Score=42.63  Aligned_cols=85  Identities=7%  Similarity=0.005  Sum_probs=52.7

Q ss_pred             eEEEEcCCh-hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCc------------ccCCHHHHhhcCceEEEccCChH
Q 025163            2 EVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT------------VGGSPAEVIKKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~G~-mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~------------~~~~~~~~~~~~dvii~~v~~~~   68 (257)
                      ++.|||-+. +|.+||..|.++|..|+.++++...... +.....            ..+.+.+....+|++|.+++.+.
T Consensus        31 ~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p~  109 (171)
T d1edza1          31 KCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFT-RGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN  109 (171)
T ss_dssp             EEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEE-SCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT
T ss_pred             EEEEECCccccHHHHHHHHHHCCCEEEEeccccccccc-cccceeeeeeccccccccchhHHhhccccCCEEEEccCCCc
Confidence            689999765 6999999999999999999865321100 000011            11225666778999999998764


Q ss_pred             H-HHHHHHhcCCcEEecccc
Q 025163           69 A-ALSAITSKGGHFLEAPVS   87 (257)
Q Consensus        69 ~-~~~~~~~~g~~~~~~pv~   87 (257)
                      . ........|...+|..+.
T Consensus       110 ~~i~~d~ik~GavvIDvGi~  129 (171)
T d1edza1         110 YKFPTEYIKEGAVCINFACT  129 (171)
T ss_dssp             CCBCTTTSCTTEEEEECSSS
T ss_pred             cccChhhcccCceEeecccc
Confidence            3 221222345555555443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=94.61  E-value=0.027  Score=43.81  Aligned_cols=38  Identities=18%  Similarity=0.267  Sum_probs=31.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCch-hHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDEL   39 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~-~~~~l   39 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.+ .++.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHH
Confidence            56777  6689999999999999999999999864 44433

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.54  E-value=0.029  Score=43.77  Aligned_cols=40  Identities=18%  Similarity=0.388  Sum_probs=31.6

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCeEEEEcC-CchhHHHHH
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELV   40 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~g~~V~~~~r-~~~~~~~l~   40 (257)
                      |.|+||  |.+.+|.++|+.|++.|++|.+.++ +.+..+.+.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHH
Confidence            578888  5578999999999999999988654 555555544

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.54  E-value=0.018  Score=41.18  Aligned_cols=31  Identities=26%  Similarity=0.359  Sum_probs=27.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      ||.|||.|..|..+|..|.+ +.+|+++++.+
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccc
Confidence            89999999999999999965 78999998753

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.48  E-value=0.029  Score=43.43  Aligned_cols=39  Identities=26%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEE-cCCchhHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELV   40 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~-~r~~~~~~~l~   40 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|++. +|+.+..+++.
T Consensus         7 K~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~   48 (259)
T d1ja9a_           7 KVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVV   48 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence            55666  66889999999999999999885 56666555544

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.47  E-value=0.017  Score=42.88  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=29.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD   37 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~   37 (257)
                      |||.|||.|.-|..++.+|.+.|.   +....|.+.+.+.
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   40 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE   40 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence            799999999999999999998774   4455676665544

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.052  Score=39.24  Aligned_cols=67  Identities=18%  Similarity=0.080  Sum_probs=50.2

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHh------hcCceEEEccCChH
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVI------KKCTITIGMLADPA   68 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~~~------~~~dvii~~v~~~~   68 (257)
                      +|.|+|+ |.+|....+.....|.+|++.++++++.+.+++.|+..     ..+..+-+      ...|+|+-++....
T Consensus        31 ~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g~~~  109 (179)
T d1qora2          31 QFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGRDT  109 (179)
T ss_dssp             EEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCGGG
T ss_pred             EEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCccHHH
Confidence            5778854 56999999988889999999999999999999888642     12333332      24688888886543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.42  E-value=0.029  Score=43.76  Aligned_cols=38  Identities=26%  Similarity=0.366  Sum_probs=30.6

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCc-hhHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDEL   39 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~-~~~~~l   39 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|++.+|+. +.++++
T Consensus        19 K~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHH
Confidence            56666  579999999999999999999988764 444444

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.41  E-value=0.02  Score=47.04  Aligned_cols=30  Identities=23%  Similarity=0.409  Sum_probs=28.1

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWN   30 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~   30 (257)
                      |||.|.|+ |.+|+.++..|++.||+|+++|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            89999965 9999999999999999999997

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=94.38  E-value=0.016  Score=44.17  Aligned_cols=34  Identities=21%  Similarity=0.404  Sum_probs=29.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|+++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            56667  56999999999999999999999998664

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.36  E-value=0.027  Score=43.42  Aligned_cols=34  Identities=15%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      |+++|  |.+.+|.++|+.|++.|++|.+.+|+++.
T Consensus         6 KvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            56666  55789999999999999999999998653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.30  E-value=0.026  Score=43.33  Aligned_cols=40  Identities=18%  Similarity=0.321  Sum_probs=33.5

Q ss_pred             eEEEE-c-CChhHHHHHHHHHHCCCe-------EEEEcCCchhHHHHHH
Q 025163            2 EVGFL-G-LGIMGKAISMNLLRNGFK-------VTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI-G-~G~mG~~la~~L~~~g~~-------V~~~~r~~~~~~~l~~   41 (257)
                      +|.+| | .+.+|.++|+.|++.|++       |.+++|++++++++.+
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHH
Confidence            66666 4 478999999999999987       8999999998887654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.27  E-value=0.022  Score=38.50  Aligned_cols=33  Identities=18%  Similarity=0.061  Sum_probs=26.8

Q ss_pred             eEEEEcCChhHHHHHHHHH---HCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLL---RNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~---~~g~~V~~~~r~~~   34 (257)
                      +|.|||.|.+|..+|..|.   .+|.+|+++.+.+.
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            6899999999999996655   45568999987643

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.024  Score=45.49  Aligned_cols=34  Identities=26%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             CeEE-EE-cCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVG-FL-GLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~-iI-G~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      .||+ |. |+|.+|+.++..|.++||+|++++|.++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~   36 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSS   36 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCc
Confidence            4785 55 5599999999999999999999998643

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=94.11  E-value=0.041  Score=42.23  Aligned_cols=40  Identities=30%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEE-cCCchhHHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVW-NRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~-~r~~~~~~~l~~   41 (257)
                      +|.+|  |.+.+|.++|+.|++.|++|.+. .|+++.++.+.+
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~   44 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSK   44 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence            46677  67899999999999999999885 567777666543

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=94.10  E-value=0.033  Score=44.24  Aligned_cols=30  Identities=20%  Similarity=0.464  Sum_probs=26.8

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      ||-|.| +|.+|+.++..|.++||+|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            787885 599999999999999999999874

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.91  E-value=0.12  Score=37.67  Aligned_cols=65  Identities=15%  Similarity=0.167  Sum_probs=48.9

Q ss_pred             CeEEEEc-C-ChhHHHHHHHHHHCCCeEEEEcCC-----chhHHHHHH----C--CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLG-L-GIMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVA----H--GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG-~-G~mG~~la~~L~~~g~~V~~~~r~-----~~~~~~l~~----~--g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||+||| . -++...+...+..-|.+++++...     ++-++.+.+    .  ......+++++++++|+|..-+-
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~~w   83 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVW   83 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCC
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEeehh
Confidence            4899999 4 589999999999999999999753     222222222    2  35678899999999999887653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.81  E-value=0.023  Score=41.10  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=27.7

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      .+|.|||.|..|..+|..|.+.|.+|++..+.
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~   35 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVG   35 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEec
Confidence            37999999999999999999999987776443

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.77  E-value=0.034  Score=37.39  Aligned_cols=33  Identities=15%  Similarity=0.021  Sum_probs=27.9

Q ss_pred             eEEEEcCChhHHHHHHHHHH---CCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLR---NGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~---~g~~V~~~~r~~~   34 (257)
                      ++.|||.|.+|..+|..|.+   .|.+|+++.|.+.
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            69999999999999987664   4789999988653

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.045  Score=42.06  Aligned_cols=37  Identities=11%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             EEEEcC-C--hhHHHHHHHHHHCCCeEEEEcCCchhHHHH
Q 025163            3 VGFLGL-G--IMGKAISMNLLRNGFKVTVWNRTLSKCDEL   39 (257)
Q Consensus         3 I~iIG~-G--~mG~~la~~L~~~g~~V~~~~r~~~~~~~l   39 (257)
                      +-|.|. |  .+|.++|+.|++.|++|++.+|+++..+.+
T Consensus         8 ~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~   47 (258)
T d1qsga_           8 ILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRV   47 (258)
T ss_dssp             EEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred             EEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence            344465 4  488999999999999999999986655444

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=93.75  E-value=0.029  Score=43.74  Aligned_cols=33  Identities=18%  Similarity=0.390  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHH-CCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLR-NGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~-~g~~V~~~~r~~~   34 (257)
                      .|.|||+|.-|...|..|++ .|++|+++++.+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCC
Confidence            38999999999999999987 4999999998754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.70  E-value=0.043  Score=38.79  Aligned_cols=28  Identities=18%  Similarity=0.194  Sum_probs=26.2

Q ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            7 GLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         7 G~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |.|.+|..+|..|++.|++|+++.+.+.
T Consensus        48 ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          48 DTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            9999999999999999999999988754

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.64  E-value=0.046  Score=42.08  Aligned_cols=34  Identities=26%  Similarity=0.495  Sum_probs=29.0

Q ss_pred             EEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163            3 VGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKC   36 (257)
Q Consensus         3 I~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~   36 (257)
                      +++|  |.+.+|.++|+.|+++|++|++.+|+.++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~   38 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA   38 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH
Confidence            5666  557799999999999999999999986653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=93.64  E-value=0.052  Score=42.10  Aligned_cols=34  Identities=12%  Similarity=0.089  Sum_probs=28.2

Q ss_pred             eEEEEcC-C--hhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            2 EVGFLGL-G--IMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         2 kI~iIG~-G--~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      ++-|.|+ |  .+|.++|+.|++.|++|++.+|+++.
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~   43 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESL   43 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence            3556675 5  59999999999999999999998643

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.43  E-value=0.03  Score=42.85  Aligned_cols=36  Identities=28%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~   37 (257)
                      |+.+|  |.+.+|.++|+.|++.|++|.+.+|+.+..+
T Consensus         8 K~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           8 RSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            45555  5578999999999999999999999876543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.35  E-value=0.079  Score=35.12  Aligned_cols=64  Identities=17%  Similarity=0.162  Sum_probs=47.4

Q ss_pred             eEEEEcC----------ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEccCCh
Q 025163            2 EVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP   67 (257)
Q Consensus         2 kI~iIG~----------G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v~~~   67 (257)
                      +|||+|+          .+-...+...|.+.|.+|.+||..-...+  ...+.....++.++.+.+|+||+.....
T Consensus        17 ~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~~   90 (108)
T d1dlja3          17 VVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYDN   90 (108)
T ss_dssp             EEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCCG
T ss_pred             EEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCch
Confidence            4777776          35677899999999999999997644321  1235667789999999999887665543

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.35  E-value=0.039  Score=41.97  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=29.0

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      ||-|.|+ +.+|.++++.|+++|++|.+.||+++
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            6766654 99999999999999999999999865

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=93.34  E-value=0.065  Score=41.28  Aligned_cols=36  Identities=8%  Similarity=-0.033  Sum_probs=29.9

Q ss_pred             eEEEEcC-Ch--hHHHHHHHHHHCCCeEEEEcCCchhHH
Q 025163            2 EVGFLGL-GI--MGKAISMNLLRNGFKVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~iIG~-G~--mG~~la~~L~~~g~~V~~~~r~~~~~~   37 (257)
                      ++-|.|+ |.  +|.++|+.|++.|.+|.+.+|+.++..
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~   46 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLI   46 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHH
Confidence            3555585 54  999999999999999999999887763

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.21  E-value=0.038  Score=41.45  Aligned_cols=39  Identities=18%  Similarity=0.202  Sum_probs=30.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCDEL   39 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~~l   39 (257)
                      +||.|||.|.-|..++.+|.+.|.   +...+|.+.+.+...
T Consensus        16 ~ki~ViGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~~~   57 (209)
T d2vapa1          16 AKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRT   57 (209)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHTCTTEEEEEEESBHHHHHTS
T ss_pred             CcEEEEEeCChHHHHHHHHHHcCCCceEEEEEeCCHHHHhcC
Confidence            489999999999999999999875   344556665555543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.10  E-value=0.052  Score=41.89  Aligned_cols=39  Identities=21%  Similarity=0.213  Sum_probs=30.0

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHH
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~   40 (257)
                      |+.+|  |.+.+|..+|+.|++.|.+|++.+|+.++.+.+.
T Consensus         6 K~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~   46 (254)
T d1sbya1           6 KNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA   46 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH
Confidence            44555  5578999999999999999888877766655443

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.08  E-value=0.053  Score=42.95  Aligned_cols=31  Identities=26%  Similarity=0.442  Sum_probs=28.0

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      .||.|.|+ |.+|+.++..|.++|++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            47889965 99999999999999999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.051  Score=40.41  Aligned_cols=30  Identities=20%  Similarity=0.030  Sum_probs=28.5

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +.|||+|..|...|..+++.|.+|.+++++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999875

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=92.94  E-value=0.022  Score=45.96  Aligned_cols=31  Identities=19%  Similarity=0.173  Sum_probs=26.8

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEEEEcC
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      |||-|.| +|.+|+.|+..|.++|++|.++++
T Consensus         3 mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~   34 (346)
T d1oc2a_           3 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVL   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEE
Confidence            7899997 699999999999999998666543

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.88  E-value=0.18  Score=35.79  Aligned_cols=65  Identities=8%  Similarity=0.126  Sum_probs=48.0

Q ss_pred             CeEEEEcC--ChhHHHHHHHHHHCCCeEEEEcCCc-----hhHHH---H-HHC--CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGL--GIMGKAISMNLLRNGFKVTVWNRTL-----SKCDE---L-VAH--GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~--G~mG~~la~~L~~~g~~V~~~~r~~-----~~~~~---l-~~~--g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||+|||=  .++-..+...+.+-|.+++++....     +..+.   . .+.  .+....+++++++++|+|..-+-
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~~   81 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVW   81 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccce
Confidence            38999993  5799999999999999999886532     11111   1 122  34577899999999999998664

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.87  E-value=0.098  Score=40.12  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=28.6

Q ss_pred             eEEE-EcC-C--hhHHHHHHHHHHCCCeEEEEcCCchhHH
Q 025163            2 EVGF-LGL-G--IMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~i-IG~-G--~mG~~la~~L~~~g~~V~~~~r~~~~~~   37 (257)
                      |+.+ -|+ |  .+|.++|+.|++.|++|.+.+|+++..+
T Consensus         9 K~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~   48 (256)
T d1ulua_           9 KKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRP   48 (256)
T ss_dssp             CEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHH
T ss_pred             CEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence            4444 476 4  5999999999999999999999865444

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.85  E-value=0.058  Score=42.92  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |+.+|  |+|.+|..++..|.++||+|++++|..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            44544  569999999999999999999999853

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.78  E-value=0.053  Score=39.69  Aligned_cols=31  Identities=13%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +|.|||.|..|..-|..+++.|.+|.++++.
T Consensus         7 ~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~   37 (192)
T d1vdca1           7 RLCIVGSGPAAHTAAIYAARAELKPLLFEGW   37 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCS
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCcEEEEEee
Confidence            6999999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.76  E-value=0.057  Score=40.41  Aligned_cols=33  Identities=18%  Similarity=0.283  Sum_probs=29.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      .+.|||.|.-|..-|..+++.|++|.++++.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378999999999999999999999999987543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.69  E-value=0.067  Score=42.20  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|-|.|+ |.+|..++..|.++||+|+.++|..+
T Consensus         2 ~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~   35 (321)
T d1rpna_           2 SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRS   35 (321)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCC
Confidence            5677755 99999999999999999999998653

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.69  E-value=0.056  Score=41.59  Aligned_cols=35  Identities=23%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         7 G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |.+.+|.++|..|++.|++|.+.+|+.++.+++.+
T Consensus         8 as~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           8 VKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   42 (252)
T ss_dssp             TTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            44679999999999999999999999888877754

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.67  E-value=0.41  Score=34.12  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNG   23 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g   23 (257)
                      +|+++|+|.+|..+.+.|.++.
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~   27 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMK   27 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCC
T ss_pred             EEEEEeCCHHHHHHHHHHHHhH
Confidence            7999999999999999999764

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.54  E-value=0.057  Score=38.97  Aligned_cols=86  Identities=26%  Similarity=0.314  Sum_probs=54.1

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHH---HHC----C---------------------CcccCCHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL---VAH----G---------------------ATVGGSPAE   52 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l---~~~----g---------------------~~~~~~~~~   52 (257)
                      |||||=|.|++|..+.+.|.+.+.+|...+- +...+.+   .+.    |                     +.-..+|.+
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd-~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC-SSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECC-CcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            8999999999999999999999999887753 2333433   221    1                     011234554


Q ss_pred             Hh---hcCceEEEccCChHHHHH--HHHhcCC--cEEecccc
Q 025163           53 VI---KKCTITIGMLADPAAALS--AITSKGG--HFLEAPVS   87 (257)
Q Consensus        53 ~~---~~~dvii~~v~~~~~~~~--~~~~~g~--~~~~~pv~   87 (257)
                      +-   .++|+|+-|+-.....+.  .....|+  ..+++|..
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~k  121 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAK  121 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CcccccCCceeEeccccccchHHhhhhhccccceeeeccccc
Confidence            32   357999999865443333  2223454  35667743

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=92.36  E-value=0.038  Score=42.88  Aligned_cols=32  Identities=19%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      |||-|.|+ |.+|..+...|.+.|+.|.+..++
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v~~~~~~   33 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLIALDVHS   33 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEEEECTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            99999985 999999999999999866654443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.35  E-value=0.06  Score=39.22  Aligned_cols=32  Identities=16%  Similarity=0.181  Sum_probs=29.3

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|.|||.|..|..-|..+++.|.+|+++++.+
T Consensus         7 dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           7 KLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             cEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            58999999999999999999999999998753

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.067  Score=42.82  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=27.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      ||-|.| .|.+|+.|++.|+++|++|++.|+
T Consensus         4 KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           4 KVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            698885 599999999999999999999874

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.30  E-value=0.068  Score=42.00  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||.|..|...|..|+++|.+|+++++++
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            37899999999999999999999999999864

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.26  E-value=0.095  Score=40.08  Aligned_cols=41  Identities=15%  Similarity=0.156  Sum_probs=33.2

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHC
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~   42 (257)
                      |..+|  |.+.+|.++|+.|++.|+  .|++.+|+.++++++++.
T Consensus         4 KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~   48 (250)
T d1yo6a1           4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSI   48 (250)
T ss_dssp             SEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHh
Confidence            44455  558999999999999996  588889999998887653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.22  E-value=0.074  Score=39.92  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||.|.-|...|..+++.|++|.++++++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998764

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.20  E-value=0.08  Score=43.07  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHH-CCCeEEEEcC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLR-NGFKVTVWNR   31 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~-~g~~V~~~~r   31 (257)
                      |||-|.|. |.+|+.++..|++ .||+|+++|+
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEec
Confidence            89988855 9999999999985 7999999874

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.06  E-value=0.16  Score=40.45  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.1

Q ss_pred             EEEE-cCChhHHHHHHHHHHCCCeEEEEcC
Q 025163            3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         3 I~iI-G~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      |-|. |.|.+|..++..|+++||+|+++|+
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIENGYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCcCeEEEEEC
Confidence            4455 5599999999999999999999975

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=91.96  E-value=0.078  Score=42.53  Aligned_cols=30  Identities=27%  Similarity=0.503  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +.|||.|.-|..+|.+|+++|++|.+..+-
T Consensus         7 viIVGsG~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           7 VVIVGSGPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence            789999999999999999999999999763

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.88  E-value=0.067  Score=39.70  Aligned_cols=31  Identities=26%  Similarity=0.296  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +.|||.|..|...|..+++.|.+|+++++++
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.77  E-value=0.068  Score=39.85  Aligned_cols=31  Identities=13%  Similarity=0.115  Sum_probs=29.0

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      .|.|||.|..|...|..+++.|.+|.+++++
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4789999999999999999999999999875

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.69  E-value=0.28  Score=35.34  Aligned_cols=65  Identities=15%  Similarity=0.054  Sum_probs=49.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHH-Hh-----hcCceEEEccCC
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAE-VI-----KKCTITIGMLAD   66 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~-----~~~~~~-~~-----~~~dvii~~v~~   66 (257)
                      +|.|.|+ |.+|...++.....|.+|+...+++++.+.+++.|...     ..+..+ ..     ...|+||=|+..
T Consensus        32 ~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG~  108 (182)
T d1v3va2          32 TVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGG  108 (182)
T ss_dssp             EEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             EEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecCc
Confidence            4667777 77999998888889999999999999999999888642     112222 22     358999999974

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.56  E-value=0.12  Score=39.48  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=32.6

Q ss_pred             Ce-EEEEcC-ChhHHHHHHHHH---HCCCeEEEEcCCchhHHHHH
Q 025163            1 ME-VGFLGL-GIMGKAISMNLL---RNGFKVTVWNRTLSKCDELV   40 (257)
Q Consensus         1 mk-I~iIG~-G~mG~~la~~L~---~~g~~V~~~~r~~~~~~~l~   40 (257)
                      || |-|-|+ ..+|.++|+.|+   +.|++|++.+|++++++++.
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~   46 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELE   46 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence            66 555565 889999999996   47899999999999877654

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.53  E-value=0.03  Score=40.68  Aligned_cols=28  Identities=21%  Similarity=0.347  Sum_probs=24.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~   29 (257)
                      +|.|||.|..|..+|..|.+.|+++.+.
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~g~~v~i~   32 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQAGYQGLIT   32 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCSCEE
T ss_pred             CEEEECccHHHHHHHHHHHhcCCceEEE
Confidence            5999999999999999999999775554

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=91.53  E-value=0.027  Score=44.81  Aligned_cols=27  Identities=22%  Similarity=0.386  Sum_probs=23.7

Q ss_pred             CeEEEEc-CChhHHHHHHHHHHCCCeEE
Q 025163            1 MEVGFLG-LGIMGKAISMNLLRNGFKVT   27 (257)
Q Consensus         1 mkI~iIG-~G~mG~~la~~L~~~g~~V~   27 (257)
                      |||-|.| +|.+|+.++..|.++||+|.
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~   28 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDV   28 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCcc
Confidence            9999995 59999999999999998543

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.51  E-value=0.087  Score=39.54  Aligned_cols=32  Identities=22%  Similarity=0.152  Sum_probs=29.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||.|.-|...|..+++.|++|.++++++
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            37899999999999999999999999998643

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.47  E-value=2.2  Score=32.40  Aligned_cols=28  Identities=21%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEE
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~   29 (257)
                      ++.|-|.|++|...++.|.+.|..|+.+
T Consensus        38 ~v~IQGfGnVG~~~a~~L~e~Gakvvav   65 (255)
T d1bgva1          38 TVALAGFGNVAWGAAKKLAELGAKAVTL   65 (255)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTCEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCeEEEE
Confidence            6889999999999999999999987654

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.43  E-value=0.11  Score=41.40  Aligned_cols=30  Identities=23%  Similarity=0.248  Sum_probs=26.4

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcC
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      +|-|.| .|.+|+.++..|.+.||+|+++||
T Consensus        18 ~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          18 VWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             EEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            466665 599999999999999999999986

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.41  E-value=0.11  Score=41.07  Aligned_cols=33  Identities=21%  Similarity=0.222  Sum_probs=28.2

Q ss_pred             eEEEE--cCChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFL--GLGIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iI--G~G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |+.+|  |.+.+|.++|..|++.|++|.+.||+.+
T Consensus         8 KvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~   42 (302)
T d1gz6a_           8 RVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGD   42 (302)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCch
Confidence            56777  5688999999999999999999987654

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.30  E-value=0.17  Score=36.63  Aligned_cols=84  Identities=20%  Similarity=0.160  Sum_probs=57.0

Q ss_pred             eEEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccC----CHHHHh-----hcCceEEEccCChHHHH
Q 025163            2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG----SPAEVI-----KKCTITIGMLADPAAAL   71 (257)
Q Consensus         2 kI~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~----~~~~~~-----~~~dvii~~v~~~~~~~   71 (257)
                      +|-|.| .|.+|+...+.....|.+|+...+++++.+.+++.|+...-    ...+..     +..|+||=++.......
T Consensus        34 ~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vgg~~~~~  113 (176)
T d1xa0a2          34 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGRTLAT  113 (176)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTTTHHH
T ss_pred             EEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCCchhHHH
Confidence            366776 69999999999999999999999999999999998865322    112222     35899999987654433


Q ss_pred             H-HHHhcCCcEEecc
Q 025163           72 S-AITSKGGHFLEAP   85 (257)
Q Consensus        72 ~-~~~~~g~~~~~~p   85 (257)
                      . .....+..++...
T Consensus       114 ~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         114 VLSRMRYGGAVAVSG  128 (176)
T ss_dssp             HHHTEEEEEEEEECS
T ss_pred             HHHHhCCCceEEEee
Confidence            3 2223344555433

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.27  E-value=0.11  Score=35.78  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHH----CCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLR----NGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~----~g~~V~~~~r~~~   34 (257)
                      +|.|||.|..|..+|..|.+    .|.+|+++.+++.
T Consensus        39 ~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          39 SITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            69999999999999998863    4889999977543

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=91.26  E-value=0.12  Score=37.07  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=28.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      .|.|||.|..|...|..+.+.|.+|.++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4789999999999999999999999999864

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=91.23  E-value=0.074  Score=43.08  Aligned_cols=31  Identities=19%  Similarity=0.396  Sum_probs=26.2

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEE-EEcC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVT-VWNR   31 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~-~~~r   31 (257)
                      |||-|.|+ |.+|+.++..|+++||+|+ .+|+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence            99999965 9999999999999999854 4554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=91.16  E-value=0.099  Score=41.39  Aligned_cols=32  Identities=25%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||.|.-|...|..|+++|++|.++++.+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            47899999999999999999999999998864

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=91.16  E-value=0.098  Score=42.11  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=28.0

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +-|||.|.-|..+|.+|+++|++|.+..+-
T Consensus         5 VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGTGYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEeCcCHHHHHHHHHHHHCcCeEEEEecC
Confidence            679999999999999999999999999873

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.079  Score=41.65  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +||.|.|+ |.+|+.++..|.++|+.|++.++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~   35 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTR   35 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTEEEECCCT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCc
Confidence            37888865 999999999999999998877653

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.09  E-value=0.22  Score=31.63  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=29.6

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |||-|||.|.=-.+|+..|.+..++|.++--|+
T Consensus         1 MkVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           1 VRVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            999999999999999999999999988874444

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.05  E-value=0.11  Score=38.59  Aligned_cols=29  Identities=21%  Similarity=0.484  Sum_probs=27.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~   29 (257)
                      |||.|+|.+.+|..+...|.++||+|..+
T Consensus         1 MkI~~~G~~~~~~~~l~~L~~~~~~i~~V   29 (203)
T d2bw0a2           1 MKIAVIGQSLFGQEVYCHLRKEGHEVVGV   29 (203)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEEcCCHHHHHHHHHHHHCCCcEEEE
Confidence            99999999999999999999999997754

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.00  E-value=0.12  Score=36.54  Aligned_cols=61  Identities=13%  Similarity=0.102  Sum_probs=46.6

Q ss_pred             CeEEEEcC---ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGL---GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~---G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      +||+|||=   +++...++..+.+-|.++++....  .... .+.......+++++++++|+|.+..
T Consensus         4 l~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~--~~~~-~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           4 LTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPS--EWQD-EENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCc--hhhc-cccceeEEEechhccccCceeeeeE
Confidence            58999997   679999999999999998887653  2211 1234567778999999999887653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=90.91  E-value=0.12  Score=39.66  Aligned_cols=52  Identities=13%  Similarity=0.169  Sum_probs=40.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEcc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      ||++||.  +  ++...+.+.|.++++++||+.       .|.......++++..||++|++=
T Consensus       124 kV~vIG~--~--P~v~~l~~~~~~~~VlE~~p~-------~gd~p~~~~~~lLp~aD~viiTG  175 (251)
T d2h1qa1         124 KVGVVGH--F--PHLESLLEPICDLSILEWSPE-------EGDYPLPASEFILPECDYVYITC  175 (251)
T ss_dssp             EEEEESC--C--TTHHHHHTTTSEEEEEESSCC-------TTCEEGGGHHHHGGGCSEEEEET
T ss_pred             EEEEEec--c--hhHHHHHhcCCcEEEEeCCCC-------CCCCCchHHHHhhhcCCEEEEEe
Confidence            7899875  5  677778889999999999974       35555556677889999999863

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=90.81  E-value=0.29  Score=34.94  Aligned_cols=69  Identities=20%  Similarity=0.146  Sum_probs=53.6

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh---------hcCceEEEccCChHHHH
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI---------KKCTITIGMLADPAAAL   71 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~---------~~~dvii~~v~~~~~~~   71 (257)
                      |-|-| +|.+|....+.....|.+|+...+++++.+.+++.|+...-+..+..         +..|+||-+|-.....+
T Consensus        27 VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg~~~~~  105 (167)
T d1tt7a2          27 VLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGKQLAS  105 (167)
T ss_dssp             EEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTHHHHH
T ss_pred             EEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcHHHHHH
Confidence            56666 59999999999888999999999999999999998876554444321         35899998987654433

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.77  E-value=0.088  Score=41.60  Aligned_cols=33  Identities=21%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             eEEEEcCChhHHHHHHHHHHC--CCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~--g~~V~~~~r~~~   34 (257)
                      +|.|||.|.-|..-|..|+++  |++|+++++++.
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~   86 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVA   86 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCC
Confidence            489999999999999999964  999999998754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.14  Score=37.94  Aligned_cols=30  Identities=20%  Similarity=0.109  Sum_probs=28.2

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +.|||.|..|...|..+++.|.+|.++++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            689999999999999999999999999874

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.66  E-value=0.12  Score=38.18  Aligned_cols=64  Identities=19%  Similarity=0.146  Sum_probs=39.6

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHh----hcCceEEEccCCh
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVI----KKCTITIGMLADP   67 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~--~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~----~~~dvii~~v~~~   67 (257)
                      +||.|+|+ |.+|..+++.|.++|+  +|....|++....  ... -....+..+..    ...|.||.|+...
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~--~~~-~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH--PRL-DNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC--TTE-ECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc--ccc-cccccchhhhhhccccchheeeeeeeee
Confidence            47999987 9999999999999998  4555566532210  000 01122333322    3468998887443

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.42  E-value=0.11  Score=39.17  Aligned_cols=39  Identities=15%  Similarity=-0.015  Sum_probs=33.1

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH   42 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~   42 (257)
                      ||-.+|+|.  +..+..|++.|++|+.+|.+++.++.+++.
T Consensus        48 rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~   86 (229)
T d2bzga1          48 RVFFPLCGK--AVEMKWFADRGHSVVGVEISELGIQEFFTE   86 (229)
T ss_dssp             EEEETTCTT--CTHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             EEEEeCCCC--cHHHHHHHhCCCcEEEEeCCHHHHHHHHHH
Confidence            688899998  366888899999999999999998877653

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.38  E-value=0.2  Score=39.96  Aligned_cols=36  Identities=19%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             eEEEE-cCC---hhHHHHHHHHHHCCCeEEEEcCCchhHH
Q 025163            2 EVGFL-GLG---IMGKAISMNLLRNGFKVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~iI-G~G---~mG~~la~~L~~~g~~V~~~~r~~~~~~   37 (257)
                      ||++| |+|   .+|.++|+.|++.|.+|.+.+++.....
T Consensus         3 kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~   42 (329)
T d1uh5a_           3 DICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNI   42 (329)
T ss_dssp             CEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHH
T ss_pred             cEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhh
Confidence            67877 866   6999999999999999999988765433

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.28  E-value=0.15  Score=37.55  Aligned_cols=31  Identities=26%  Similarity=0.291  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      .+.|||.|..|...|..+++.|.+|.++++.
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            3789999999999999999999999999875

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=90.25  E-value=0.2  Score=35.22  Aligned_cols=63  Identities=16%  Similarity=0.011  Sum_probs=44.6

Q ss_pred             CeEEEEcCC---hhHHHHHHHHHHCCCeEEEEcCCch---hHHHHHHC--CCcccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLS---KCDELVAH--GATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~G---~mG~~la~~L~~~g~~V~~~~r~~~---~~~~l~~~--g~~~~~~~~~~~~~~dvii~~   63 (257)
                      .||+|||=+   ++...++..+.+-|.++.++...+.   .-+.+...  .+...+++.++++++|+|...
T Consensus         4 l~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2           4 LVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             CEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEE
T ss_pred             CEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEe
Confidence            489999974   4899999999999998765533211   11222223  355678999999999998764

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=90.23  E-value=0.14  Score=41.69  Aligned_cols=30  Identities=40%  Similarity=0.530  Sum_probs=25.4

Q ss_pred             CeEEEEc-------CChhH---HHHHHHHHHCCCeEEEEc
Q 025163            1 MEVGFLG-------LGIMG---KAISMNLLRNGFKVTVWN   30 (257)
Q Consensus         1 mkI~iIG-------~G~mG---~~la~~L~~~g~~V~~~~   30 (257)
                      |||.+|+       .|.+|   ..|++.|++.||+|+++.
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvt   40 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT   40 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEe
Confidence            9999988       36665   677999999999999874

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.10  E-value=0.18  Score=38.13  Aligned_cols=33  Identities=15%  Similarity=0.128  Sum_probs=28.1

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      +|-|.|+ |.+|.++++.|+++|++|.+.|+++.
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4666665 88999999999999999999988654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.09  E-value=0.47  Score=33.23  Aligned_cols=64  Identities=17%  Similarity=0.176  Sum_probs=49.2

Q ss_pred             eEEEEcC---ChhHHHHHHHHHHCCCeEEEEcCC-----chhHHHHHHCC--CcccCCHHHHhhcCceEEEccC
Q 025163            2 EVGFLGL---GIMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         2 kI~iIG~---G~mG~~la~~L~~~g~~V~~~~r~-----~~~~~~l~~~g--~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      ||+|||=   +++...++..+.+-|.+++++...     ++..+.+.+.+  .....|+.++++++|+|..-.-
T Consensus         6 ~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           6 KIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             EEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             EEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            7999998   678999999999999999988653     22234444444  3467899999999998887654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.07  E-value=0.25  Score=33.20  Aligned_cols=36  Identities=19%  Similarity=0.236  Sum_probs=31.4

Q ss_pred             CeEEEEcCC-----------hhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163            1 MEVGFLGLG-----------IMGKAISMNLLRNGFKVTVWNRTLSKC   36 (257)
Q Consensus         1 mkI~iIG~G-----------~mG~~la~~L~~~g~~V~~~~r~~~~~   36 (257)
                      .||-|||.|           +.+...++.|.+.|+++++.|-||+.+
T Consensus         5 kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTV   51 (121)
T d1a9xa4           5 EKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETV   51 (121)
T ss_dssp             CEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSS
T ss_pred             CEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhh
Confidence            378999998           578888999999999999999999864

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=89.78  E-value=0.16  Score=41.07  Aligned_cols=30  Identities=27%  Similarity=0.231  Sum_probs=27.6

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +-|||.|.-|..+|.+|+++|++|.+..+-
T Consensus         5 ~IIVGsG~aG~v~A~rLae~g~~VlvLEaG   34 (360)
T d1kdga1           5 YIIVGAGPGGIIAADRLSEAGKKVLLLERG   34 (360)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHhhCCCeEEEEEcc
Confidence            679999999999999999999999998664

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=89.75  E-value=0.16  Score=40.92  Aligned_cols=30  Identities=17%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +-|||.|.-|..+|.+|+++|++|.+..+-
T Consensus        10 vIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            579999999999999999999999999864

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.52  E-value=0.17  Score=41.22  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             eEEEEcCChhHHHHHHHHHH------CCCeEEEEcCCch
Q 025163            2 EVGFLGLGIMGKAISMNLLR------NGFKVTVWNRTLS   34 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~------~g~~V~~~~r~~~   34 (257)
                      .|.|||+|.-|...|..|++      +|++|.++++...
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            47899999999999999997      8999999998754

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.42  E-value=0.26  Score=36.27  Aligned_cols=36  Identities=14%  Similarity=0.205  Sum_probs=27.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~   37 (257)
                      +|-|||.|..|..+..+|.+.+.   +...+|.+...+.
T Consensus         3 ~IkViGvGGaG~n~vn~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1rq2a1           3 VIKVVGIGGGGVNAVNRMIEQGLKGVEFIAINTDAQALL   41 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESCHHHHH
T ss_pred             eEEEEEeCchHHHHHHHHHHcCCCCceEEEEcchHHHHh
Confidence            68899999999999999999885   3444565555444

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.36  E-value=0.51  Score=34.63  Aligned_cols=36  Identities=14%  Similarity=0.181  Sum_probs=28.7

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC---eEEEEcCCchhHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF---KVTVWNRTLSKCD   37 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~---~V~~~~r~~~~~~   37 (257)
                      +|-|||.|.-|..++.+|.+.+.   +....|.+.+.+.
T Consensus         3 ~IkViGvGGaG~n~v~~~~~~~~~~v~~iainTD~~~L~   41 (198)
T d1ofua1           3 VIKVIGVGGGGGNAVNHMAKNNVEGVEFICANTDAQALK   41 (198)
T ss_dssp             CEEEEEEHHHHHHHHHHHHHTTCCSEEEEEEESBTGGGS
T ss_pred             eEEEEEECchHHHHHHHHHHcCCCCeEEEEEeCcHHHHh
Confidence            58899999999999999999875   4555566665553

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.27  E-value=0.49  Score=35.39  Aligned_cols=65  Identities=22%  Similarity=0.281  Sum_probs=44.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC--------chhHH----HHHHC--CCcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT--------LSKCD----ELVAH--GATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~--------~~~~~----~l~~~--g~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||.|.|+|..|..++..|.+.+. +++++||.        ....+    .+.+.  ......++.++++++++++....
T Consensus        27 ~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~~  106 (222)
T d1vl6a1          27 VKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR  106 (222)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC
T ss_pred             cEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcceeccccc
Confidence            379999999999999999998775 69889876        11111    11211  22344577888888887766543

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.19  E-value=0.17  Score=37.30  Aligned_cols=31  Identities=19%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +.|||.|.-|..-|..+++.|.+|.++++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            7899999999999999999999999998753

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.94  E-value=0.21  Score=38.07  Aligned_cols=30  Identities=23%  Similarity=0.261  Sum_probs=28.4

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCC
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRT   32 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~   32 (257)
                      +.|||.|.-|...|..+++.|.+|.+++++
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            689999999999999999999999999875

>d1iira_ c.87.1.5 (A:) UDP-glucosyltransferase GtfB {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: UDP-glucosyltransferase GtfB
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=88.40  E-value=0.48  Score=37.54  Aligned_cols=43  Identities=21%  Similarity=0.231  Sum_probs=32.1

Q ss_pred             CeEEEEcCChhH-----HHHHHHHHHCCCeEEEEcCCchhHHHHHHCCC
Q 025163            1 MEVGFLGLGIMG-----KAISMNLLRNGFKVTVWNRTLSKCDELVAHGA   44 (257)
Q Consensus         1 mkI~iIG~G~mG-----~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~   44 (257)
                      |||.|.+.|.=|     .++|+.|.++||+|++..- ++..+.+.+.|+
T Consensus         1 mkil~~~~gt~Gh~~P~lala~~L~~~Gh~V~~~~~-~~~~~~v~~~g~   48 (401)
T d1iira_           1 MRVLLATCGSRGDTEPLVALAVRVRDLGADVRMCAP-PDCAERLAEVGV   48 (401)
T ss_dssp             CEEEEECCSCHHHHHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHHTTC
T ss_pred             CEEEEECCCChhHHHHHHHHHHHHHHCCCEEEEEeC-cchHHHHHHcCC
Confidence            999999888643     5699999999999998863 444455555553

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=88.36  E-value=0.68  Score=33.31  Aligned_cols=65  Identities=12%  Similarity=0.122  Sum_probs=47.6

Q ss_pred             CeEEEEcCC--hhHHHHHHHHHHCCCeEEEEcCCc----hhH-H---H-HHHCC--CcccCCHHHHhhcCceEEEccC
Q 025163            1 MEVGFLGLG--IMGKAISMNLLRNGFKVTVWNRTL----SKC-D---E-LVAHG--ATVGGSPAEVIKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iIG~G--~mG~~la~~L~~~g~~V~~~~r~~----~~~-~---~-l~~~g--~~~~~~~~~~~~~~dvii~~v~   65 (257)
                      .||+++|=|  +|...++..+..-|.+++++....    +.+ +   . ....|  .....+++++++++|+|..-+-
T Consensus         6 l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w   83 (183)
T d1duvg2           6 MTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVW   83 (183)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCS
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEEeh
Confidence            489999954  799999999999999999986521    111 1   1 12234  3567899999999999987654

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=88.35  E-value=0.5  Score=35.35  Aligned_cols=25  Identities=36%  Similarity=0.396  Sum_probs=22.8

Q ss_pred             cCChhHHHHHHHHHHCCCeEEEEcC
Q 025163            7 GLGIMGKAISMNLLRNGFKVTVWNR   31 (257)
Q Consensus         7 G~G~mG~~la~~L~~~g~~V~~~~r   31 (257)
                      -.|.||.+||..+.++|++|+++.-
T Consensus        30 SSGk~G~aiA~~~~~~Ga~V~li~g   54 (223)
T d1u7za_          30 SSGKMGFAIAAAAARRGANVTLVSG   54 (223)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CcHHHHHHHHHHHHHcCCchhhhhc
Confidence            4799999999999999999999854

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.11  E-value=0.28  Score=36.24  Aligned_cols=29  Identities=21%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~   29 (257)
                      |||.++|.+.+|....+.|.++|++|..+
T Consensus         1 Mkiv~~~~~~~g~~~l~~L~~~g~~I~~V   29 (203)
T d2blna2           1 MKTVVFAYHDMGCLGIEALLAAGYEISAI   29 (203)
T ss_dssp             CEEEEEECHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEecCHHHHHHHHHHHHCCCCEEEE
Confidence            99999999999999999999999998654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=87.59  E-value=0.31  Score=37.86  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=27.5

Q ss_pred             EEEEcCC---hhHHHHHHHHHHCCCeEEEEcCCchh
Q 025163            3 VGFLGLG---IMGKAISMNLLRNGFKVTVWNRTLSK   35 (257)
Q Consensus         3 I~iIG~G---~mG~~la~~L~~~g~~V~~~~r~~~~   35 (257)
                      +-|-|++   .+|.++|+.|++.|.+|++.+|++..
T Consensus        11 alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~   46 (297)
T d1d7oa_          11 AFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPAL   46 (297)
T ss_dssp             EEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHH
T ss_pred             EEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhh
Confidence            4455875   59999999999999999999987653

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.15  E-value=0.26  Score=38.78  Aligned_cols=32  Identities=22%  Similarity=0.297  Sum_probs=29.4

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      .|.|||.|..|..-|..++++|.+|.++++.+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48899999999999999999999999998754

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=87.14  E-value=0.42  Score=35.18  Aligned_cols=29  Identities=21%  Similarity=0.169  Sum_probs=26.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEE
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW   29 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~   29 (257)
                      |||.|+|.+..+..+.+.|.+.|++|..+
T Consensus         4 mKI~f~G~~~~~~~~L~~L~~~~~~i~~V   32 (206)
T d1fmta2           4 LRIIFAGTPDFAARHLDALLSSGHNVVGV   32 (206)
T ss_dssp             CEEEEEECSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCCEEEE
Confidence            89999999999999999999999986543

>d2ftsa3 c.57.1.2 (A:499-653) Gephyrin, domain 5 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Molybdenum cofactor biosynthesis proteins
superfamily: Molybdenum cofactor biosynthesis proteins
family: MoeA central domain-like
domain: Gephyrin, domain 5
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.69  E-value=0.53  Score=33.00  Aligned_cols=56  Identities=14%  Similarity=0.172  Sum_probs=39.7

Q ss_pred             CeEEEEcCCh-----------------hHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEc
Q 025163            1 MEVGFLGLGI-----------------MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM   63 (257)
Q Consensus         1 mkI~iIG~G~-----------------mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~   63 (257)
                      .||+||-.|.                 =+..++..|.+.|++|.-+..-++..+.+.+       .+.++++++|+||++
T Consensus         1 PrV~iistG~El~~~~~~~~~g~i~dsN~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~-------~l~~~~~~~Dliitt   73 (155)
T d2ftsa3           1 PVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLN-------ALNEGISRADVIITS   73 (155)
T ss_dssp             CCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHH-------HHHHHHHHCSEEEEE
T ss_pred             CEEEEEeCChhccCCCCcCCCCcEeechHHHHHHHhcccccceEEEEEecCchhHHHH-------HHHHhhcccCEEEEe
Confidence            4678887663                 3677888888899988777555555555543       355667789999985

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=86.63  E-value=1.1  Score=31.58  Aligned_cols=64  Identities=13%  Similarity=0.127  Sum_probs=44.8

Q ss_pred             CeEEEEcCC-hhHHHHHHHHHHCCCeEEEEcCC-----chhHHHHHHC------CCcccCCHHHHhhcCceEEEcc
Q 025163            1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRT-----LSKCDELVAH------GATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         1 mkI~iIG~G-~mG~~la~~L~~~g~~V~~~~r~-----~~~~~~l~~~------g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      .||+|||-| ++...++..|.+-|.+|+++...     ++-.+.+.+.      ......++.++++++|+|..-+
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            379999974 46677777788889999988642     2222222221      2457789999999999988654

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.62  E-value=0.31  Score=35.01  Aligned_cols=30  Identities=23%  Similarity=0.362  Sum_probs=24.3

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC---CeEEEEc
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWN   30 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g---~~V~~~~   30 (257)
                      |||||=|.|++|..+.+.+.++.   .+|+..+
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaIN   33 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   33 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEc
Confidence            79999999999999999988654   4555553

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=86.58  E-value=0.43  Score=34.24  Aligned_cols=87  Identities=18%  Similarity=0.255  Sum_probs=51.0

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC----CeEEEEc--CCchhHHHHHHC----C---------------------CcccCC
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWN--RTLSKCDELVAH----G---------------------ATVGGS   49 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g----~~V~~~~--r~~~~~~~l~~~----g---------------------~~~~~~   49 (257)
                      |||||=|.|++|..+.+.+.+++    .+|...+  .+.+.+..|.+.    |                     +.-..+
T Consensus         2 ikigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           2 IRVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            79999999999999999998643    4555554  233333334331    1                     111235


Q ss_pred             HHHHh---hcCceEEEccCChHHHHH--HHHhcCCc--EEecccc
Q 025163           50 PAEVI---KKCTITIGMLADPAAALS--AITSKGGH--FLEAPVS   87 (257)
Q Consensus        50 ~~~~~---~~~dvii~~v~~~~~~~~--~~~~~g~~--~~~~pv~   87 (257)
                      |.++-   .++|+|+-|+-.....+.  ..-..|+.  .+++|..
T Consensus        82 p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~~  126 (173)
T d1obfo1          82 PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPGG  126 (173)
T ss_dssp             GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCCC
T ss_pred             HHHCcccccccceEEEecccccCHHHHHHHhccCCcceEEecCCC
Confidence            55542   268999999865333222  22234543  5566643

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=85.84  E-value=0.51  Score=33.72  Aligned_cols=86  Identities=19%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCCCeEEEEcC---CchhHHHHHHC----C-------------------Cc--ccCCHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAH----G-------------------AT--VGGSPAE   52 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g~~V~~~~r---~~~~~~~l~~~----g-------------------~~--~~~~~~~   52 (257)
                      .||||=|.|++|..+.+.+.+.+.+|...+-   +.+.+..|.+.    |                   +.  -..++.+
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            3899999999999999999999988777643   33445555442    1                   11  1235555


Q ss_pred             Hh---hcCceEEEccCChHHHHH--HHHhcCCc--EEeccc
Q 025163           53 VI---KKCTITIGMLADPAAALS--AITSKGGH--FLEAPV   86 (257)
Q Consensus        53 ~~---~~~dvii~~v~~~~~~~~--~~~~~g~~--~~~~pv   86 (257)
                      +-   .++|+|+-|+-.....+.  ..-..|+.  ++++|.
T Consensus        81 i~W~~~gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~  121 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS  121 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCC
T ss_pred             CCccccCCCEEEecCceEcCHHHHHHHHhcCCceEeecCCc
Confidence            31   369999999865544433  11123443  556664

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=85.39  E-value=0.4  Score=37.67  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      |.|||.|.-|..-|..++++|.+|.++++++
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            7899999999999999999999999998754

>d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=85.29  E-value=4.1  Score=28.74  Aligned_cols=111  Identities=13%  Similarity=0.111  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhcCC--Cchhhhcc-CCcccCCCCCC-CcccchHHHHH----HHHHH
Q 025163          140 NMIMGCMMNTFSEGLVLAEKSGLDPRTLLDVLDLGGI--ANPMFKGK-GPTMLQSNYAP-AFPLKHQQKDM----RLALA  211 (257)
Q Consensus       140 n~~~~~~~~~~~E~~~l~~~~g~~~~~~~~~~~~~~~--~s~~~~~~-~~~~~~~~~~~-~~~~~~~~kd~----~~~~~  211 (257)
                      ......+.+.=.|-.+++++.|.+...+.+......+  .+...+.. ......+-..| .+....+..|+    -.+..
T Consensus        41 p~v~~~l~alD~Er~aIa~alg~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~P~~~~hRYi~EDvp~GLv~~~~  120 (172)
T d1bg6a1          41 PSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRYFFEDVSTGLVPLSE  120 (172)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcCCCcchHHHHHhcCccccCCCCCCCccccceeccccchHHHHHH
Confidence            3344555666778888888888875444433332111  11111000 00000000011 22333466776    45789


Q ss_pred             HHhhcCCCchHHHHHHHHHHHHHHc------------CCCCCcHHHHHHHH
Q 025163          212 LGDENAVSMPIAAAANEAFKKARSL------------GLGDNDFSAVFEVV  250 (257)
Q Consensus       212 ~a~~~g~~~p~~~~~~~~~~~~~~~------------g~~~~d~~~l~~~~  250 (257)
                      +++..|+++|+.+.+..+-+....+            |.++.+...|.+++
T Consensus       121 la~~~gV~tP~i~~ii~~a~~~~g~d~~~~Grtl~~lgl~~~s~~~l~~~~  171 (172)
T d1bg6a1         121 LGRAVNVPTPLIDAVLDLISSLIDTDFRKEGRTLEKLGLSGLTAAGIRSAV  171 (172)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHTTCCHHHHSCCTTTTTCTTCCHHHHHHHH
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHCcCHHhcCCCHHHCCCCCCCHHHHHHHh
Confidence            9999999999999999988875432            45566666666654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=85.29  E-value=0.38  Score=34.60  Aligned_cols=66  Identities=18%  Similarity=0.153  Sum_probs=48.0

Q ss_pred             EEEE-cCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHH-----h--hcCceEEEccCChH
Q 025163            3 VGFL-GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEV-----I--KKCTITIGMLADPA   68 (257)
Q Consensus         3 I~iI-G~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~-----~--~~~dvii~~v~~~~   68 (257)
                      |.|. |.|.+|....+.....|.+|+...+++++.+.+++.|+..+-+..+.     +  ...|.++=+|....
T Consensus        35 vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~~  108 (177)
T d1o89a2          35 IVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDKV  108 (177)
T ss_dssp             EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHHH
T ss_pred             EEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchHH
Confidence            4444 56999999999999999999999999999998888886543322221     1  22477887776543

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=84.84  E-value=0.62  Score=31.49  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             eEEEEcCC-----------hhHHHHHHHHHHCCCeEEEEcCCchhH
Q 025163            2 EVGFLGLG-----------IMGKAISMNLLRNGFKVTVWNRTLSKC   36 (257)
Q Consensus         2 kI~iIG~G-----------~mG~~la~~L~~~g~~V~~~~r~~~~~   36 (257)
                      ||-|||.|           +.+.-.++.|.+.|+++++.|-||+.+
T Consensus         9 kvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TV   54 (127)
T d1a9xa3           9 SILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATI   54 (127)
T ss_dssp             EEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCG
T ss_pred             EEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhh
Confidence            78999997           467888899999999999999999864

>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: NADPH-dependent FMN reductase
domain: Hypothetical protein Ylr011wp
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.76  E-value=1.5  Score=31.33  Aligned_cols=113  Identities=17%  Similarity=0.109  Sum_probs=57.6

Q ss_pred             CeEEEE-cC---ChhHHHHHHHHH----H------CCCeEEEEcCCchhHHHHHHC--C------CcccC------CHHH
Q 025163            1 MEVGFL-GL---GIMGKAISMNLL----R------NGFKVTVWNRTLSKCDELVAH--G------ATVGG------SPAE   52 (257)
Q Consensus         1 mkI~iI-G~---G~mG~~la~~L~----~------~g~~V~~~~r~~~~~~~l~~~--g------~~~~~------~~~~   52 (257)
                      |||.+| |.   |+.+..+++.+.    +      .|++|.++|.....+..+...  .      .....      ...+
T Consensus         1 MKIlvI~GS~R~~s~~~~la~~~~~~l~~~~~~~~~g~~v~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (185)
T d1t0ia_           1 MKVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSR   80 (185)
T ss_dssp             CEEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHH
T ss_pred             CEEEEEeCCCCCCChHHHHHHHHHHHHHHhhhhcCCCcEEEEEeccccCccccchhhhccccccccccccCCHHHHHHHH
Confidence            899877 54   456666665554    2      378999998533222111100  0      00000      1224


Q ss_pred             HhhcCceEEEccCChH-----HHHHHHHhcCCcEEeccccCCccccccCcEEEEecC--ChhhHHHHHHHHHHhcCCeE
Q 025163           53 VIKKCTITIGMLADPA-----AALSAITSKGGHFLEAPVSGSKQPAETGQLVILSAG--EKALYDEAISALNVIGKKAF  124 (257)
Q Consensus        53 ~~~~~dvii~~v~~~~-----~~~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~l~~~~~~~~  124 (257)
                      .+..+|.||+++|.+.     ..+..+-     ++..+..+.+      ...+..|+  .....+.++.++..++..++
T Consensus        81 ~i~~AD~iIi~tP~Y~~~~~~~lK~~iD-----~~~~~~~gKp------v~ivs~g~~gg~~a~~~L~~~l~~~g~~vv  148 (185)
T d1t0ia_          81 IVNALDIIVFVTPQYNWGYPAALKNAID-----RLYHEWHGKP------ALVVSYGGHGGSKCNDQLQEVLHGLKMNVI  148 (185)
T ss_dssp             HHHTCSEEEEEEECBTTBCCHHHHHHHH-----TCSTTTTTCE------EEEEEEETTTTHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHhCCCeEEEEeeecCCCcHHHHHHHH-----HhhHHHCCCE------EEEEEEcCcchHHHHHHHHHHHHHCCCEEc
Confidence            4678999999999653     2222221     1211222111      11222232  34556678888888886644

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=84.49  E-value=0.51  Score=35.87  Aligned_cols=31  Identities=26%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             EEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +-|||.|..|...|..+++.|.+|+++++.+
T Consensus        45 vvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          45 AIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999998764

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.60  E-value=0.86  Score=31.78  Aligned_cols=31  Identities=29%  Similarity=0.245  Sum_probs=26.9

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCC-eEEEEcCC
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT   32 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~-~V~~~~r~   32 (257)
                      ||.|||.|..|.-.|..+.+.|. .|+++.|.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            78999999999999999999986 47777664

>d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Thermus thermophilus [TaxId: 274]

Probab=83.41  E-value=1.7  Score=28.88  Aligned_cols=78  Identities=24%  Similarity=0.241  Sum_probs=56.4

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHHHH--Hh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSAI--TS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~~~--~~   76 (257)
                      ||.|-|. |..|+.-++.+.+.|-+|..- .+|.+--+- -.|+.+.++..|+++  ++|+-++.||.+...+..+  .+
T Consensus         9 rVivQGiTG~~G~~ht~~m~~yGT~iVaG-VtPgkgG~~-~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~EAi~   86 (121)
T d1oi7a1           9 RVLVQGITGREGQFHTKQMLTYGTKIVAG-VTPGKGGME-VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEAAH   86 (121)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTCE-ETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHHHH
T ss_pred             cEEEEcCCCcHHHHHHHHHHHhCCceEee-eecCCCCcE-EECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHHHHh
Confidence            7888897 999999999999999886643 334431100 036788899999875  6899999999887777633  23


Q ss_pred             cCCcE
Q 025163           77 KGGHF   81 (257)
Q Consensus        77 ~g~~~   81 (257)
                      .|+..
T Consensus        87 agI~l   91 (121)
T d1oi7a1          87 AGIPL   91 (121)
T ss_dssp             TTCSE
T ss_pred             CCCcE
Confidence            45544

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=83.36  E-value=1.1  Score=31.66  Aligned_cols=55  Identities=5%  Similarity=-0.013  Sum_probs=40.6

Q ss_pred             hhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhcCceEEEcc
Q 025163           10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus        10 ~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~dvii~~v   64 (257)
                      ++...++..+.+-|.+|+++....-....-...++....|+.++++++|+|+.-+
T Consensus        20 ~Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~   74 (161)
T d1js1x2          20 AVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKN   74 (161)
T ss_dssp             HHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeeh
Confidence            4667788888899999999976432222222346788899999999999998633

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=0.55  Score=35.92  Aligned_cols=29  Identities=24%  Similarity=0.407  Sum_probs=23.9

Q ss_pred             EEEE-cCChhHHHHHHHHHHCCC-eEEEEcC
Q 025163            3 VGFL-GLGIMGKAISMNLLRNGF-KVTVWNR   31 (257)
Q Consensus         3 I~iI-G~G~mG~~la~~L~~~g~-~V~~~~r   31 (257)
                      |.|. |+|.+|+.++..|.++|+ +|+++|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~   32 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDN   32 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEEC
Confidence            4455 569999999999999995 7999863

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.17  E-value=0.38  Score=40.02  Aligned_cols=30  Identities=20%  Similarity=0.245  Sum_probs=24.1

Q ss_pred             CeEEEEc--------CChhH---HHHHHHHHHCCCeEEEEc
Q 025163            1 MEVGFLG--------LGIMG---KAISMNLLRNGFKVTVWN   30 (257)
Q Consensus         1 mkI~iIG--------~G~mG---~~la~~L~~~g~~V~~~~   30 (257)
                      |||.+|.        .|.+|   ..|++.|+++||+|+++.
T Consensus         1 M~i~~v~~e~~P~~~~GGl~~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_           1 MNVLSVSSEIYPLIKTGGLADVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             CEEEEECSCBTTTBCSSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CEEEEEEEeeecccccCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence            8999985        25554   668999999999999863

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=82.99  E-value=0.55  Score=35.63  Aligned_cols=32  Identities=28%  Similarity=0.287  Sum_probs=26.0

Q ss_pred             EEEEc-CChhHHHHHHHHHHCCC-eEEEEcCCch
Q 025163            3 VGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLS   34 (257)
Q Consensus         3 I~iIG-~G~mG~~la~~L~~~g~-~V~~~~r~~~   34 (257)
                      |-|.| .|.+|.++|+.|+++|+ +|+++.|+..
T Consensus        12 ~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~   45 (259)
T d2fr1a1          12 VLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGP   45 (259)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGG
T ss_pred             EEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            44555 69999999999999998 5888888743

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=82.49  E-value=0.57  Score=38.03  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=27.2

Q ss_pred             EEEEcCChhHHHHHHHHHHCC-CeEEEEcCCc
Q 025163            3 VGFLGLGIMGKAISMNLLRNG-FKVTVWNRTL   33 (257)
Q Consensus         3 I~iIG~G~mG~~la~~L~~~g-~~V~~~~r~~   33 (257)
                      +-|||.|.-|..+|.+|+++| +.|.+..+-+
T Consensus        27 ~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          27 YIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            579999999999999999998 6999986543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=82.32  E-value=0.48  Score=33.79  Aligned_cols=38  Identities=13%  Similarity=-0.030  Sum_probs=30.8

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      +|-.||+|.=  ..+..|+++|++|+++|.+++.++..++
T Consensus        23 rvLd~GCG~G--~~a~~la~~G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          23 RVLVPLCGKS--QDMSWLSGQGYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             EEEETTTCCS--HHHHHHHHHCCEEEEEEECHHHHHHHHH
T ss_pred             EEEEecCcCC--HHHHHHHHcCCceEeecccHHHHHHHHH
Confidence            6788888764  3556788889999999999998887765

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=1.1  Score=34.47  Aligned_cols=39  Identities=15%  Similarity=0.082  Sum_probs=28.5

Q ss_pred             CeEEEE--cCChhHHHHHHHHHHCCCeEEEE---cCCchhHHHH
Q 025163            1 MEVGFL--GLGIMGKAISMNLLRNGFKVTVW---NRTLSKCDEL   39 (257)
Q Consensus         1 mkI~iI--G~G~mG~~la~~L~~~g~~V~~~---~r~~~~~~~l   39 (257)
                      .||.+|  |.+.+|.++|..|++.|.+|..+   .|+.+..+++
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l   45 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRL   45 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHH
Confidence            378888  46899999999999999874443   5555544443

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.01  E-value=2.1  Score=29.77  Aligned_cols=63  Identities=17%  Similarity=0.116  Sum_probs=44.4

Q ss_pred             eEEEEcC---ChhHHHHHHHHHHCCC-eEEEEcCC-----chhHHHHHHCCC--cccCCHHHHhhcCceEEEcc
Q 025163            2 EVGFLGL---GIMGKAISMNLLRNGF-KVTVWNRT-----LSKCDELVAHGA--TVGGSPAEVIKKCTITIGML   64 (257)
Q Consensus         2 kI~iIG~---G~mG~~la~~L~~~g~-~V~~~~r~-----~~~~~~l~~~g~--~~~~~~~~~~~~~dvii~~v   64 (257)
                      ||++||=   +++...+...+.+-|. .++++...     +...+.+...|.  ....++.++++++|+|....
T Consensus         6 ~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~   79 (160)
T d1ekxa2           6 HVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTR   79 (160)
T ss_dssp             EEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECC
T ss_pred             EEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeec
Confidence            7999997   5699999999988864 45665432     122333444554  45789999999999988654

>d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain
species: Escherichia coli [TaxId: 562]

Probab=81.79  E-value=1.6  Score=28.88  Aligned_cols=78  Identities=21%  Similarity=0.142  Sum_probs=56.7

Q ss_pred             eEEEEcC-ChhHHHHHHHHHHCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--cCceEEEccCChHHHHHHH--Hh
Q 025163            2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSAI--TS   76 (257)
Q Consensus         2 kI~iIG~-G~mG~~la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~~~--~~   76 (257)
                      ||.|.|. |.-|+..++.+.+.|-+|..- .+|.+--+- -.|+.+..+..|+++  ++|.-++.||.+...+..+  .+
T Consensus         8 rVlvQGiTG~~G~~ht~~m~~yGT~vVaG-VtPgkgG~~-~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~EAi~   85 (119)
T d2nu7a1           8 KVICQGFTGSQGTFHSEQAIAYGTKMVGG-VTPGKGGTT-HLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAID   85 (119)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCEEEEE-ECTTCTTEE-ETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHHHH
T ss_pred             cEEEEcCCCcHHHHHHHHHHHhCCceEEE-EccCCCCcc-cCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHHHHH
Confidence            7889998 999999999999999886633 334331100 137888999999875  6899999999988777633  24


Q ss_pred             cCCcE
Q 025163           77 KGGHF   81 (257)
Q Consensus        77 ~g~~~   81 (257)
                      .|+..
T Consensus        86 agI~~   90 (119)
T d2nu7a1          86 AGIKL   90 (119)
T ss_dssp             TTCSE
T ss_pred             CCCCE
Confidence            45544

>d1q7ra_ c.23.16.1 (A:) Hypothetical protein YaaE {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: Class I glutamine amidotransferases (GAT)
domain: Hypothetical protein YaaE
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.52  E-value=1.4  Score=31.91  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=23.5

Q ss_pred             CeEEEEcC-ChhHHHHHHHHHHCCCeEEEEc
Q 025163            1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWN   30 (257)
Q Consensus         1 mkI~iIG~-G~mG~~la~~L~~~g~~V~~~~   30 (257)
                      ||||||-. |+. ..+.+.|.+.|+++.+.+
T Consensus         7 mkIgii~~~Gn~-~s~~~al~~~G~~~~~v~   36 (202)
T d1q7ra_           7 MKIGVLGLQGAV-REHVRAIEACGAEAVIVK   36 (202)
T ss_dssp             CEEEEESCGGGC-HHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEEECCCCH-HHHHHHHHHCCCcEEEEC
Confidence            89999988 887 445688888999888774

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Flavoproteins
family: Quinone reductase
domain: Quinone reductase type 2 (menadione reductase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.48  E-value=0.96  Score=33.55  Aligned_cols=34  Identities=24%  Similarity=0.182  Sum_probs=24.4

Q ss_pred             CeEEEE-cC-------ChhHHHHHHHHHHCCCeEEEEcCCch
Q 025163            1 MEVGFL-GL-------GIMGKAISMNLLRNGFKVTVWNRTLS   34 (257)
Q Consensus         1 mkI~iI-G~-------G~mG~~la~~L~~~g~~V~~~~r~~~   34 (257)
                      |||.|| |.       ..+...+...+.++|++|.+.|....
T Consensus         3 mKiLiI~ghp~~~S~t~~l~~~~~~~~~~~g~ev~~~dL~~~   44 (230)
T d2qwxa1           3 KKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYAM   44 (230)
T ss_dssp             CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred             CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCEEEEEEcccc
Confidence            788776 43       34556666777788999999987543

>d1pn3a_ c.87.1.5 (A:) TDP-epi-vancosaminyltransferase GtfA {Amycolatopsis orientalis [TaxId: 31958]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Gtf glycosyltransferase
domain: TDP-epi-vancosaminyltransferase GtfA
species: Amycolatopsis orientalis [TaxId: 31958]

Probab=80.47  E-value=1.3  Score=34.78  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=30.0

Q ss_pred             CeEEEEcCChhHH-----HHHHHHHHCCCeEEEEcCCchhHHHHHH
Q 025163            1 MEVGFLGLGIMGK-----AISMNLLRNGFKVTVWNRTLSKCDELVA   41 (257)
Q Consensus         1 mkI~iIG~G~mG~-----~la~~L~~~g~~V~~~~r~~~~~~~l~~   41 (257)
                      |||-|.+.|.=|.     ++|+.|.++||+|++... +...+.+.+
T Consensus         1 mril~~~~gt~Ghi~P~laLA~~L~~rGh~V~~~~~-~~~~~~v~~   45 (391)
T d1pn3a_           1 MRVLITGCGSRGDTEPLVALAARLRELGADARMCLP-PDYVERCAE   45 (391)
T ss_dssp             CEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEC-GGGHHHHHH
T ss_pred             CEEEEEcCCChhHHHHHHHHHHHHHHCCCEEEEEEC-hhhHhHHHH
Confidence            9999998887654     589999999999998863 343343433

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.42  E-value=1.2  Score=32.39  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=28.8

Q ss_pred             CeEEEEcCChhHHHHHHHHHHCC-----CeEEE-EcC--CchhHHHHHH
Q 025163            1 MEVGFLGLGIMGKAISMNLLRNG-----FKVTV-WNR--TLSKCDELVA   41 (257)
Q Consensus         1 mkI~iIG~G~mG~~la~~L~~~g-----~~V~~-~~r--~~~~~~~l~~   41 (257)
                      |||||=|.|++|..+.+.+.+.+     .+|.. -|.  +.+.+..|.+
T Consensus         3 ikigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~ayLlk   51 (190)
T d1k3ta1           3 IKVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYFAYQMR   51 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHHHHHhh
Confidence            68999999999999999988764     24444 344  3455554443

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.33  E-value=1.1  Score=30.06  Aligned_cols=32  Identities=19%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             eEEEEcCChhHHHHHHHHHHCCCeEEEEcCCc
Q 025163            2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL   33 (257)
Q Consensus         2 kI~iIG~G~mG~~la~~L~~~g~~V~~~~r~~   33 (257)
                      +|+|||.|.-+.-.|..|.+..-+|+++.|.+
T Consensus        29 ~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          29 KVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             EEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            68999999999999999999988999998764

>d1g2ia_ c.23.16.2 (A:) Intracellular protease {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Class I glutamine amidotransferase-like
family: DJ-1/PfpI
domain: Intracellular protease
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=80.30  E-value=2.9  Score=29.02  Aligned_cols=63  Identities=17%  Similarity=0.048  Sum_probs=36.6

Q ss_pred             CeEEEE---cCChhHHH-HHHHHHHCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHH-hhcCceEEEccC
Q 025163            1 MEVGFL---GLGIMGKA-ISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEV-IKKCTITIGMLA   65 (257)
Q Consensus         1 mkI~iI---G~G~mG~~-la~~L~~~g~~V~~~~r~~~~~~~l~~~g~~~~--~~~~~~-~~~~dvii~~v~   65 (257)
                      |||+|+   |.-.+=.. ....|.++|++|.++..+...+.  ...|..+.  .+++++ ..+.|+|+++=.
T Consensus         1 mKv~il~~dgf~~~E~~~p~~~l~~ag~~v~~vs~~~~~V~--~~~g~~i~~d~~~~~~~~~~~d~viipGg   70 (166)
T d1g2ia_           1 MKVLFLTANEFEDVELIYPYHRLKEEGHEVYIASFERGTIT--GKHGYSVKVDLTFDKVNPEEFDALVLPGG   70 (166)
T ss_dssp             CEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEE--CTTSCEEEECEEGGGCCGGGCSEEEECCB
T ss_pred             CEEEEEeCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCceEe--ecCCcEEeccccHHHcCcccccEEEEecc
Confidence            788877   33333222 23467789999999977654432  12354433  234453 346788888754