Citrus Sinensis ID: 025166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
MEEEKHPPADHLHHHHHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVKGKSRRNLFECVCLSGKFQN
cccccccccccccccccccccccccccccHHHHHHccccccccccccccccccEEEEEEccccHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHccccEEEEEEccccccccEEccccHHHHHHHccccccEEEEEEccEEEEEccccccccccccccccccccccccccccccccccccEEEEEcccccc
cccccccccccccccccccEEEEccccccccEEEcccccccccccccccccccEEEEEEcccHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccHHHHHHHHHHHHccccEEEEEcccccccEEcccccccHHHHHHccccccEEEEEEccEEEEEEcccccccccccccccccccccccccccccccccccEEEEEcccccc
meeekhppadhlhhhhhhsvqycsarimsPEIVEIgedhsrsigaasrdaaASDVYVAVGKDDLHVLKWALDhavspgarIYLVHVfspvtyintpvgrLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLvmgtklsprsrlftkklskgefvkknapdycevtivhdgkkvvdgQKVAEaelarssspspsspgtgrpqvkgksrrnlFECVCLSGKFQN
meeekhppadhlhhhhHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRvyvneennrrRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSlvmgtklsprsrlftkklskgefvkknapdyceVTIVHDGKKVVDGQKVAEAelarssspspsspgtgrpqvkgksrrnLFECVCLSGKFQN
MEEEKHPPADhlhhhhhhSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLnqeqvrvyvneennrrrnllqKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARssspspsspGTGRPQVKGKSRRNLFECVCLSGKFQN
**************************************************AASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVV************************************************
*******************************************************YVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE*********NNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPR*R******SKGEFVKKNAPDYCEVTIVHDGK********************************************LSGKF**
**********************CSARIMSPEIVEIGEDHSRSI********ASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAE*************************RRNLFECVCLSGKFQN
*****HPPADHLHHHHHHSVQYCSARIMSPEIVEIGE*************AASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQK******************************NLFECVCLSGK***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEEEKHPPADHLHHHHHHSVQYCSARIMSPEIVEIGEDHSRSIGAASRDAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVKGKSRRNLFECVCLSGKFQN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query257 2.2.26 [Sep-21-2011]
Q8GUH1 834 U-box domain-containing p no no 0.642 0.197 0.270 2e-11
Q8GZ84 435 U-box domain-containing p no no 0.525 0.310 0.310 4e-09
Q9FKG6 845 U-box domain-containing p no no 0.536 0.163 0.305 1e-08
Q9LQ92 308 U-box domain-containing p no no 0.692 0.577 0.292 4e-08
Q9SW11 835 U-box domain-containing p no no 0.536 0.165 0.263 5e-06
Q9FGD7 765 Putative U-box domain-con no no 0.478 0.160 0.246 1e-05
Q683D5 400 U-box domain-containing p no no 0.486 0.312 0.258 2e-05
P0C6E7 568 Putative U-box domain-con no no 0.618 0.279 0.242 0.0002
>sp|Q8GUH1|PUB33_ARATH U-box domain-containing protein 33 OS=Arabidopsis thaliana GN=PUB33 PE=2 SV=2 Back     alignment and function desciption
 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 88/185 (47%), Gaps = 20/185 (10%)

Query: 55  VYVAVGKDDLHVLK------WALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
           ++VAV K   HV K      WAL +  + G +I L+HV  P   I     +     + +E
Sbjct: 47  IFVAVDK---HVAKSKSTLIWALQN--TGGKKICLIHVHQPSQMIPLMGAKFPVGAVKEE 101

Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVM 168
           +VRV+  +E  +   +L  Y+R+C   + V  E M +E ++    I+ LIS   +  LVM
Sbjct: 102 EVRVFREKEREKVHMILDDYLRICQQ-RGVRAEKMFIEMESIENGIVQLISELGIRKLVM 160

Query: 169 GTKLSPRSRLFTKKLS-----KGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSS 223
           G   +   R ++++++     K  FV++ AP  C++     G  +   +   +   +  +
Sbjct: 161 G---AAADRHYSRRMTDLKSRKAIFVRREAPTLCQIWFTCKGYLIHTREATMDDTESEYA 217

Query: 224 SPSPS 228
           SP PS
Sbjct: 218 SPRPS 222
Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -
>sp|Q8GZ84|PUB36_ARATH U-box domain-containing protein 36 OS=Arabidopsis thaliana GN=PUB36 PE=2 SV=2 Back     alignment and function description
>sp|Q9FKG6|PUB52_ARATH U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1 Back     alignment and function description
>sp|Q9LQ92|PUB54_ARATH U-box domain-containing protein 54 OS=Arabidopsis thaliana GN=PUB54 PE=2 SV=1 Back     alignment and function description
>sp|Q9SW11|PUB35_ARATH U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2 Back     alignment and function description
>sp|Q9FGD7|PUB50_ARATH Putative U-box domain-containing protein 50 OS=Arabidopsis thaliana GN=PUB50 PE=3 SV=1 Back     alignment and function description
>sp|Q683D5|PUB37_ARATH U-box domain-containing protein 37 OS=Arabidopsis thaliana GN=PUB37 PE=2 SV=1 Back     alignment and function description
>sp|P0C6E7|PUB55_ARATH Putative U-box domain-containing protein 55 OS=Arabidopsis thaliana GN=PUB55 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
255540535315 ATP binding protein, putative [Ricinus c 0.933 0.761 0.640 5e-83
449440638239 PREDICTED: U-box domain-containing prote 0.914 0.983 0.633 1e-78
359491215240 PREDICTED: U-box domain-containing prote 0.929 0.995 0.611 4e-78
224121762234 predicted protein [Populus trichocarpa] 0.910 1.0 0.609 4e-77
224135933236 predicted protein [Populus trichocarpa] 0.914 0.995 0.603 1e-76
147863738230 hypothetical protein VITISV_010065 [Viti 0.789 0.882 0.643 3e-70
449445772240 PREDICTED: U-box domain-containing prote 0.856 0.916 0.605 3e-68
449523760342 PREDICTED: U-box domain-containing prote 0.743 0.558 0.661 6e-65
356564962305 PREDICTED: uncharacterized protein LOC10 0.828 0.698 0.522 8e-53
224089553289 predicted protein [Populus trichocarpa] 0.739 0.657 0.379 4e-30
>gi|255540535|ref|XP_002511332.1| ATP binding protein, putative [Ricinus communis] gi|223550447|gb|EEF51934.1| ATP binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  313 bits (802), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 196/259 (75%), Gaps = 19/259 (7%)

Query: 1   MEEEKHPPADHLHHHHHHSVQYC-SARIMSPEIVEIGEDHSRSIGAASRDAAAS-DVYVA 58
           MEEEK   A  ++     S QYC SARIMS EIVEIG+D SRSI A+SRD     DVYVA
Sbjct: 1   MEEEKPSCALPVN-----STQYCNSARIMSSEIVEIGDD-SRSI-ASSRDGGCFLDVYVA 53

Query: 59  VGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEEN 118
           VGKDDLHVLKWALD AVSPG R++LVHVF P+TYI TPVGRL+RSQL+Q+QVR Y+NEE+
Sbjct: 54  VGKDDLHVLKWALDRAVSPGTRVFLVHVFPPITYIPTPVGRLSRSQLSQDQVRFYINEEH 113

Query: 119 NRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRL 178
           NRRR++LQKYIRLCNDAK VTV+TML+ES  TAKAILDLI V N+T+LVMGT   PRSRL
Sbjct: 114 NRRRSILQKYIRLCNDAK-VTVDTMLIESNETAKAILDLIPVLNITNLVMGTTRPPRSRL 172

Query: 179 FTKKLSKGEFVKKNAPDYCEVTIVHDGKKVVDGQKVAEAELARSSSPSPSSPGTGRPQVK 238
             K+L+K EFVKKNAPDYCEVT+VHD KK+ + ++V  + L+ S         T RP + 
Sbjct: 173 LRKRLAKAEFVKKNAPDYCEVTVVHDEKKIAESKEVVHSSLSSS---------TRRPDIT 223

Query: 239 GKSRRNLFECVCLSGKFQN 257
             S R  FECVC S +F +
Sbjct: 224 RNSDRKFFECVCFSSRFNS 242

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440638|ref|XP_004138091.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] gi|449522187|ref|XP_004168109.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359491215|ref|XP_003634243.1| PREDICTED: U-box domain-containing protein 54-like [Vitis vinifera] gi|297733717|emb|CBI14964.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224121762|ref|XP_002318666.1| predicted protein [Populus trichocarpa] gi|222859339|gb|EEE96886.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224135933|ref|XP_002322197.1| predicted protein [Populus trichocarpa] gi|222869193|gb|EEF06324.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147863738|emb|CAN79356.1| hypothetical protein VITISV_010065 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445772|ref|XP_004140646.1| PREDICTED: U-box domain-containing protein 52-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449523760|ref|XP_004168891.1| PREDICTED: U-box domain-containing protein 52-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|356564962|ref|XP_003550714.1| PREDICTED: uncharacterized protein LOC100816919 [Glycine max] Back     alignment and taxonomy information
>gi|224089553|ref|XP_002308753.1| predicted protein [Populus trichocarpa] gi|222854729|gb|EEE92276.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query257
TAIR|locus:2061012 788 AT2G24370 [Arabidopsis thalian 0.587 0.191 0.272 1.2e-07
TAIR|locus:2198190 308 PUB54 "plant U-box 54" [Arabid 0.568 0.474 0.262 4.8e-06
TAIR|locus:2098816 435 AT3G61390 [Arabidopsis thalian 0.533 0.314 0.288 2.9e-05
TAIR|locus:504954932 789 AT5G57035 [Arabidopsis thalian 0.525 0.171 0.290 0.00011
TAIR|locus:2050669 834 AT2G45910 [Arabidopsis thalian 0.630 0.194 0.274 0.00016
TAIR|locus:2149244 394 AT5G20310 "AT5G20310" [Arabido 0.556 0.362 0.25 0.00063
TAIR|locus:2061012 AT2G24370 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 145 (56.1 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 42/154 (27%), Positives = 65/154 (42%)

Query:    55 VYVAVGKD--DLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLXXXXXXX 112
             V VA+ KD    H LKWA+D+ +  G  + LVHV    + +N      A S         
Sbjct:    20 VAVAIDKDKSSQHALKWAVDNLLQRGQSVILVHVKLRPSPLNNSASLHASSAKLSQDSSL 79

Query:   113 XXXXXXXXXXXXXXKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 172
                            +   C   K +  + +L+E    AKA+++ ++ A +  LV+G+  
Sbjct:    80 VCRDPEGISKEIFLPFRCFCT-RKDIQCQDVLLEESDVAKALVEYVNQAAIEVLVVGSSS 138

Query:   173 SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDGK 206
                   F K       + KNAPD+C V I+  GK
Sbjct:   139 KGGFLRFNKPTDIPGSITKNAPDFCTVYIISKGK 172
GO:0004672 "protein kinase activity" evidence=IEA
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005886 "plasma membrane" evidence=ISM
GO:0006468 "protein phosphorylation" evidence=IEA
GO:0016301 "kinase activity" evidence=ISS
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0002238 "response to molecule of fungal origin" evidence=RCA
TAIR|locus:2198190 PUB54 "plant U-box 54" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098816 AT3G61390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504954932 AT5G57035 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050669 AT2G45910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149244 AT5G20310 "AT5G20310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0015016801
hypothetical protein (234 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
cd01989146 cd01989, STK_N, The N-terminal domain of Eukaryoti 2e-28
cd00293130 cd00293, USP_Like, Usp: Universal stress protein f 1e-08
pfam00582139 pfam00582, Usp, Universal stress protein family 2e-04
COG0589154 COG0589, UspA, Universal stress protein UspA and r 3e-04
>gnl|CDD|238947 cd01989, STK_N, The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
 Score =  105 bits (263), Expect = 2e-28
 Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 10/153 (6%)

Query: 55  VYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRV 112
           V VAV KD    + LKWALD+  + G  I LVHV  P+T I +  G         E    
Sbjct: 2   VAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSG-------KLEVASA 54

Query: 113 YVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKL 172
           Y  EE+   + LL  Y   C+  K V  E +++E    AKAI++ ++   +T LVMG   
Sbjct: 55  YKQEEDKEAKELLLPYRCFCSR-KGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASS 113

Query: 173 SPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG 205
                +  KK      V K APD+C V +V  G
Sbjct: 114 DNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG 146

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding. Length = 146
>gnl|CDD|238182 cd00293, USP_Like, Usp: Universal stress protein family Back     alignment and domain information
>gnl|CDD|216006 pfam00582, Usp, Universal stress protein family Back     alignment and domain information
>gnl|CDD|223662 COG0589, UspA, Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 257
cd01989146 STK_N The N-terminal domain of Eukaryotic Serine T 99.96
PRK15456142 universal stress protein UspG; Provisional 99.94
PRK15005144 universal stress protein F; Provisional 99.93
PRK09982142 universal stress protein UspD; Provisional 99.91
PRK15118144 universal stress global response regulator UspA; P 99.9
PF00582140 Usp: Universal stress protein family; InterPro: IP 99.88
cd01988132 Na_H_Antiporter_C The C-terminal domain of a subfa 99.87
PRK10116142 universal stress protein UspC; Provisional 99.87
cd01987124 USP_OKCHK USP domain is located between the N-term 99.86
PRK11175 305 universal stress protein UspE; Provisional 99.85
PRK11175305 universal stress protein UspE; Provisional 99.81
COG0589154 UspA Universal stress protein UspA and related nuc 99.8
cd00293130 USP_Like Usp: Universal stress protein family. The 99.78
PRK12652 357 putative monovalent cation/H+ antiporter subunit E 99.5
PRK10490 895 sensor protein KdpD; Provisional 99.24
COG2205 890 KdpD Osmosensitive K+ channel histidine kinase [Si 99.03
cd0198486 AANH_like Adenine nucleotide alpha hydrolases supe 98.1
PLN03159 832 cation/H(+) antiporter 15; Provisional 97.04
PLN03159832 cation/H(+) antiporter 15; Provisional 96.45
TIGR02432189 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t 95.0
PF01171182 ATP_bind_3: PP-loop family; InterPro: IPR011063 Th 92.76
cd01992185 PP-ATPase N-terminal domain of predicted ATPase of 92.71
PRK12342254 hypothetical protein; Provisional 90.94
PRK03359256 putative electron transfer flavoprotein FixA; Revi 89.66
COG2086260 FixA Electron transfer flavoprotein, beta subunit 88.19
cd01993185 Alpha_ANH_like_II This is a subfamily of Adenine n 85.96
TIGR00591 454 phr2 photolyase PhrII. All proteins in this family 84.89
COG0041162 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) m 83.58
PF00875165 DNA_photolyase: DNA photolyase from Prosite.; Inte 82.62
PRK10696258 tRNA 2-thiocytidine biosynthesis protein TtcA; Pro 81.85
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases Back     alignment and domain information 
Probab=99.96  E-value=1.7e-27  Score=193.12  Aligned_cols=143  Identities=37%  Similarity=0.582  Sum_probs=117.9

Q ss_pred             eEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025166           54 DVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQKYIRL  131 (257)
Q Consensus        54 kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~~~~~  131 (257)
                      +||||+|+|+  .+||+||+++|...+++|++|||+++........+.       ......+.+..++.++++|+++.+.
T Consensus         1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~   73 (146)
T cd01989           1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGK-------LEVASAYKQEEDKEAKELLLPYRCF   73 (146)
T ss_pred             CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccc-------hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999999999  999999999999899999999999764322211110       0112234445566778889999888


Q ss_pred             hhhCCCeeEEEEEEec-CchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEcCC
Q 025166          132 CNDAKQVTVETMLVES-KATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVHDG  205 (257)
Q Consensus       132 ~~~~g~v~ve~~v~~G-~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr~~  205 (257)
                      +...+ ++++..++.| ++ ++.|+++|++.++|+||||+||++++.++++|+||+.+|++++++.||||||++|
T Consensus        74 ~~~~~-~~~~~~~~~g~~~-~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~~  146 (146)
T cd01989          74 CSRKG-VQCEDVVLEDDDV-AKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSKG  146 (146)
T ss_pred             HhhcC-CeEEEEEEeCCcH-HHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeCc
Confidence            87778 8999999987 56 8999999999999999999999999988888768999999999999999999875

The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
>PRK15456 universal stress protein UspG; Provisional Back     alignment and domain information
>PRK15005 universal stress protein F; Provisional Back     alignment and domain information
>PRK09982 universal stress protein UspD; Provisional Back     alignment and domain information
>PRK15118 universal stress global response regulator UspA; Provisional Back     alignment and domain information
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents Back     alignment and domain information
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea Back     alignment and domain information
>PRK10116 universal stress protein UspC; Provisional Back     alignment and domain information
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>PRK11175 universal stress protein UspE; Provisional Back     alignment and domain information
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms] Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed Back     alignment and domain information
>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF) Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>PLN03159 cation/H(+) antiporter 15; Provisional Back     alignment and domain information
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain Back     alignment and domain information
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,] Back     alignment and domain information
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK12342 hypothetical protein; Provisional Back     alignment and domain information
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed Back     alignment and domain information
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion] Back     alignment and domain information
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily Back     alignment and domain information
>TIGR00591 phr2 photolyase PhrII Back     alignment and domain information
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00875 DNA_photolyase: DNA photolyase from Prosite Back     alignment and domain information
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query257
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 8e-06
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 8e-06
3fg9_A156 Protein of universal stress protein USPA family; A 4e-05
3s3t_A146 Nucleotide-binding protein, universal stress PROT 6e-05
3olq_A 319 Universal stress protein E; structural genomics, P 2e-04
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 2e-04
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 4e-04
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Length = 175 Back     alignment and structure
 Score = 55.2 bits (133), Expect = 1e-09
 Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 15/148 (10%)

Query: 65  HVLKWALDHAVSPG---ARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRR 121
              +W L+  V       +I L+HV          V  +  S  +   +R     +    
Sbjct: 29  RAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK---G 85

Query: 122 RNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTK-LSPRSRLFT 180
            +LL+ ++  C++   V  E  +         I   +       LV+G++ L    ++F 
Sbjct: 86  LHLLEFFVNKCHEIG-VGCEAWIKTGDP-KDVICQEVKRVRPDFLVVGSRGLGRFQKVF- 142

Query: 181 KKL-SKGEFVKKNAPDYCEVTIVHDGKK 207
             + +   F  K+A   C V  +     
Sbjct: 143 --VGTVSAFCVKHAE--CPVMTIKRNAD 166
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Length = 138 Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Length = 170 Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Length = 156 Back     alignment and structure
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} Length = 146 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Length = 319 Back     alignment and structure
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Length = 162 Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} Length = 147 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
3s3t_A146 Nucleotide-binding protein, universal stress PROT 99.94
1mjh_A162 Protein (ATP-binding domain of protein MJ0577); hy 99.94
3idf_A138 USP-like protein; universal, stress, PSI, MCSG, st 99.93
3fg9_A156 Protein of universal stress protein USPA family; A 99.93
2dum_A170 Hypothetical protein PH0823; conserved hypothetica 99.93
3hgm_A147 Universal stress protein TEAD; rossman fold, signa 99.93
1tq8_A163 Hypothetical protein RV1636; MTCY01B2.28, structur 99.93
2z08_A137 Universal stress protein family; uncharacterized c 99.92
2gm3_A175 Unknown protein; AT3G01520, putative ethylene-resp 99.92
3dlo_A155 Universal stress protein; unknown function, struct 99.92
3tnj_A150 Universal stress protein (USP); structural genomic 99.91
3fdx_A143 Putative filament protein / universal stress PROT; 99.9
1jmv_A141 USPA, universal stress protein A; chaperone; 1.85A 99.88
3olq_A 319 Universal stress protein E; structural genomics, P 99.87
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.86
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.85
3loq_A294 Universal stress protein; structural genomics, PSI 99.85
1q77_A138 Hypothetical protein AQ_178; structural genomics, 99.85
3mt0_A290 Uncharacterized protein PA1789; structural genomic 99.83
3cis_A309 Uncharacterized protein; alpha/beta hydrolase, ATP 99.83
3olq_A319 Universal stress protein E; structural genomics, P 99.82
3loq_A294 Universal stress protein; structural genomics, PSI 99.82
3mt0_A 290 Uncharacterized protein PA1789; structural genomic 99.81
3ab8_A268 Putative uncharacterized protein TTHA0350; tandem- 99.74
2iel_A138 Hypothetical protein TT0030; TT0030,thermus thermo 92.22
3a2k_A 464 TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, 86.66
2ywx_A157 Phosphoribosylaminoimidazole carboxylase catalyti; 85.2
4b4k_A181 N5-carboxyaminoimidazole ribonucleotide mutase; is 83.08
1wy5_A317 TILS, hypothetical UPF0072 protein AQ_1887; N-type 82.94
4grd_A173 N5-CAIR mutase, phosphoribosylaminoimidazole carbo 82.47
2xry_A 482 Deoxyribodipyrimidine photolyase; DNA damage, DNA 80.52
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0 Back     alignment and structure
Probab=99.94  E-value=2.5e-26  Score=183.39  Aligned_cols=140  Identities=15%  Similarity=0.243  Sum_probs=118.6

Q ss_pred             CCCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHHH
Q 025166           50 AAASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQEQVRVYVNEENNRRRNLLQK  127 (257)
Q Consensus        50 ~~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~lL~~  127 (257)
                      .++++||||+|+|+  .+||+||+.+|...+++|++|||++.........+         .....+.+..++.+++.|++
T Consensus         3 ~~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~   73 (146)
T 3s3t_A            3 ARYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALD---------PVLSELLDAEAAHAKDAMRQ   73 (146)
T ss_dssp             CCCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred             CccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccc---------cccHHHHHHHHHHHHHHHHH
Confidence            46899999999999  99999999999988999999999987643211100         01223444556677888999


Q ss_pred             HHHHhhhCCCe-eEEEEEEecCchHHHHHH-HHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166          128 YIRLCNDAKQV-TVETMLVESKATAKAILD-LISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH  203 (257)
Q Consensus       128 ~~~~~~~~g~v-~ve~~v~~G~~va~~Il~-~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr  203 (257)
                      +.+.+...| + +++..+..|++ +++|++ +|++.++||||||++|++++.++++| |++++|+++++  |||||||
T Consensus        74 ~~~~~~~~g-~~~~~~~~~~g~~-~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~G-s~~~~vl~~~~--~pVlvV~  146 (146)
T 3s3t_A           74 RQQFVATTS-APNLKTEISYGIP-KHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVG-STTSYVVDHAP--CNVIVIR  146 (146)
T ss_dssp             HHHHHTTSS-CCCCEEEEEEECH-HHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSC-HHHHHHHHHCS--SEEEEEC
T ss_pred             HHHHHHhcC-CcceEEEEecCCh-HHHHHHHHHhhcCCCEEEECCCCCCCcceEEEc-chHHHHhccCC--CCEEEeC
Confidence            998888888 8 99999999998 899999 99999999999999999999887777 99999999999  9999996
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4 Back     alignment and structure
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes} Back     alignment and structure
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum} Back     alignment and structure
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii} Back     alignment and structure
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0 Back     alignment and structure
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4 Back     alignment and structure
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A Back     alignment and structure
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4 Back     alignment and structure
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A* Back     alignment and structure
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A* Back     alignment and structure
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A* Back     alignment and structure
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4 Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4 Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A* Back     alignment and structure
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis} Back     alignment and structure
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus} Back     alignment and structure
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa} Back     alignment and structure
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A* Back     alignment and structure
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4 Back     alignment and structure
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Back     alignment and structure
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii} Back     alignment and structure
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis} Back     alignment and structure
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Back     alignment and structure
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia} Back     alignment and structure
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 257
d2gm3a1171 c.26.2.4 (A:5-175) Putative ethylene-responsive pr 1e-06
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 171 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: Putative ethylene-responsive protein AT3g01520/F4P13 7
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.2 bits (106), Expect = 1e-06
 Identities = 21/162 (12%), Positives = 48/162 (29%), Gaps = 11/162 (6%)

Query: 49  DAAASDVYVAVGKDDLHVLKWALDHAVSPGARIYLVHVFSPVTYINTPVGRLARSQLNQE 108
           +A+    Y           +W L+  V      + + +             +     + E
Sbjct: 9   NASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPE 68

Query: 109 QVRVYVNEENNRRRNLLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVM 168
             R        +  +LL+ ++  C++          +++      I   +       LV+
Sbjct: 69  DFRDMRQSNKAKGLHLLEFFVNKCHEIGVGC--EAWIKTGDPKDVICQEVKRVRPDFLVV 126

Query: 169 GTKLSPRSRLFTKKL---SKGEFVKKNAPDYCEVTIVHDGKK 207
           G+    R     +K+   +   F  K+A   C V  +     
Sbjct: 127 GS----RGLGRFQKVFVGTVSAFCVKHAE--CPVMTIKRNAD 162

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query257
d1mjha_160 "Hypothetical" protein MJ0577 {Archaeon Methanococ 99.96
d2gm3a1171 Putative ethylene-responsive protein AT3g01520/F4P 99.94
d2z3va1135 Hypothetical protein TTHA0895 {Thermus thermophilu 99.93
d1tq8a_147 Hypothetical protein Rv1636 {Mycobacterium tubercu 99.91
d1jmva_140 Universal stress protein A, UspA {Haemophilus infl 99.89
d1q77a_138 Hypothetical protein Aq_178 {Aquifex aeolicus [Tax 99.87
d3clsc1262 Small, beta subunit of electron transfer flavoprot 90.33
d1np7a2204 Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 89.13
d1wy5a1216 TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId 86.97
d1efpb_246 Small, beta subunit of electron transfer flavoprot 86.91
d1o4va_169 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 86.35
d1u11a_159 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 85.76
d1xmpa_155 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 84.06
d1efvb_252 Small, beta subunit of electron transfer flavoprot 83.87
d1owla2202 DNA photolyase {Synechococcus elongatus [TaxId: 32 83.86
d1qcza_163 N5-CAIR mutase (phosphoribosylaminoimidazole carbo 81.34
>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: Universal stress protein-like
domain: "Hypothetical" protein MJ0577
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=2.5e-28  Score=197.30  Aligned_cols=150  Identities=15%  Similarity=0.136  Sum_probs=121.1

Q ss_pred             CCCeEEEeecCCh--HHHHHHHHHHhcCCCCeEEEEEEecCCCCCCCc-----ccccccccccHHHHHHHHHHHHHHHHH
Q 025166           51 AASDVYVAVGKDD--LHVLKWALDHAVSPGARIYLVHVFSPVTYINTP-----VGRLARSQLNQEQVRVYVNEENNRRRN  123 (257)
Q Consensus        51 ~~~kILVaVDgS~--~~AL~~Al~~a~~~~a~l~LlHV~~~~~~~~~~-----~g~~~~~~l~~~~~~~~~~~~~~~~~~  123 (257)
                      +|+|||||+|+|+  .+|++||+++|+..+++|+++||+++.......     .+........++....+.+...+++++
T Consensus         2 m~~~ILvavD~s~~s~~al~~a~~la~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (160)
T d1mjha_           2 MYKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN   81 (160)
T ss_dssp             CCCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred             CcCeEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEEEecccccccccccccccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            5899999999999  999999999999999999999999765321111     000001111122333445555667788


Q ss_pred             HHHHHHHHhhhCCCeeEEEEEEecCchHHHHHHHHhhCCCcEEEEccCCCCCcccccccCCHHHHHHhhCCCCceEEEEc
Q 025166          124 LLQKYIRLCNDAKQVTVETMLVESKATAKAILDLISVANVTSLVMGTKLSPRSRLFTKKLSKGEFVKKNAPDYCEVTIVH  203 (257)
Q Consensus       124 lL~~~~~~~~~~g~v~ve~~v~~G~~va~~Il~~A~e~~aDLIVmGsrG~s~l~r~~lGgSVs~~Vv~~A~~~cPVLVVr  203 (257)
                      .|+++...+...+ +++++++..|++ ++.|+++|++.++||||||+||++++.++|+| |++++|+++++  |||||||
T Consensus        82 ~l~~~~~~~~~~g-v~~~~~~~~G~~-~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~G-S~a~~vl~~s~--~pVlvV~  156 (160)
T d1mjha_          82 KMENIKKELEDVG-FKVKDIIVVGIP-HEEIVKIAEDEGVDIIIMGSHGKTNLKEILLG-SVTENVIKKSN--KPVLVVK  156 (160)
T ss_dssp             HHHHHHHHHHHTT-CEEEEEEEEECH-HHHHHHHHHHTTCSEEEEESCCSSCCTTCSSC-HHHHHHHHHCC--SCEEEEC
T ss_pred             HHHHHHHHHHhcC-CeEEEEEEeccH-HHHHhhhhhccccceEEeccCCCCcccccccC-cHHHHHHhcCC--CCEEEEc
Confidence            8999988888888 999999999998 89999999999999999999999999998887 99999999999  9999999


Q ss_pred             CC
Q 025166          204 DG  205 (257)
Q Consensus       204 ~~  205 (257)
                      +.
T Consensus       157 ~~  158 (160)
T d1mjha_         157 RK  158 (160)
T ss_dssp             CC
T ss_pred             CC
Confidence            75
>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]} Back     information, alignment and structure
>d1np7a2 c.28.1.1 (A:1-204) Cryptochrome {Synechocystis sp., pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1efpb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]} Back     information, alignment and structure
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1efvb_ c.26.2.3 (B:) Small, beta subunit of electron transfer flavoprotein ETFP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1owla2 c.28.1.1 (A:3-204) DNA photolyase {Synechococcus elongatus [TaxId: 32046]} Back     information, alignment and structure
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure