Citrus Sinensis ID: 025219

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------

MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRKLFVSFSSYTYVNTLKRIND

cHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEcccccccccHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEcccccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHccccccccHHHHHHHccccccccccHHHHHHHHHccccccccEEEcccccHHHHHHHHHcccccHHHHHHEEEEEEccEEEEccccccc

cHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccEEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccHHHHHHHHHHHHHHcccHccEEEEEcccccccccccccHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHHHcccHHHccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHEccc

MSWLLVIVSTIVVWVASLFKILNssrsqsnaaflttgdkkNVLLVIahpddesmffsptinyltsrrHNLHILCMsngnadgmgnirKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLiitfdnygvsghcnhrdvHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVhcllnehpkkSFLAMSQHHSQWVWFRKLFVSFSSYTYVNTLKRIND

**WLLVIVSTIVVWVASLFKILNSS***SNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRKLFVSFSSYTYVNTLK****

MSWLLVIVSTIVVWVASLFKILNSSR************KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRKLFVSFSSYTYVNTLKRI**

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SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		256	2.2.26 [Sep-21-2011]
O35790		252	N-acetylglucosaminyl-phos	yes	no	0.941	0.956	0.351	2e-36
Q54C64		258	Probable N-acetylglucosam	yes	no	0.843	0.837	0.359	7e-36
Q5SX19		252	N-acetylglucosaminyl-phos	yes	no	0.941	0.956	0.343	4e-35
Q9Y2B2		252	N-acetylglucosaminyl-phos	yes	no	0.949	0.964	0.358	3e-34
A6QQ24		253	N-acetylglucosaminyl-phos	yes	no	0.828	0.837	0.391	4e-33
Q9HDW9		248	Probable N-acetylglucosam	yes	no	0.917	0.947	0.346	6e-33
P23797		304	N-acetylglucosaminyl-phos	yes	no	0.941	0.792	0.302	6e-23

>sp\|O35790\|PIGL_RAT N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Rattus norvegicus GN=Pigl PE=2 SV=1	Back alignment and function desciption

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/253 (35%), Positives = 139/253 (54%), Gaps = 12/253 (4%)

Query: 4   LLVIVSTIVVWVASLFKILNSS---RSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTI 60
           LL +   ++ W     ++ NS+   RS   A     G +   L+VIAHPDDE+MFF+PTI
Sbjct: 6   LLCVAVAVLTW--GFLRVWNSAERMRSPEQAGLPGAGSR--ALVVIAHPDDEAMFFAPTI 61

Query: 61  NYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKL 120
             L   +  + +LC S+GN    G IRK EL ++CAVL IP  +V ++D  +F D  +  
Sbjct: 62  LGLARLKQQVSLLCFSSGNYYNQGEIRKKELLQSCAVLGIPPSRVMIIDKREFPDDPEVQ 121

Query: 121 WNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWS-YLNGTSERNIEAWE 179
           W+ + +A  + + +   + DL++TFD  GVSGH NH  ++  + + +  G          
Sbjct: 122 WDTEHVASTILQHIHANATDLVVTFDAEGVSGHSNHIALYKAVRALHSGGKLPEGCSVLT 181

Query: 180 LMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRKLF 239
           L + N+LRKY   LD+  ++LS     +G +  L ++   ++  AMS H SQ +WFR L+
Sbjct: 182 LQSVNVLRKYVFLLDLPWTLLSP----QGVLFVLTSKEVAQAKKAMSCHRSQLLWFRHLY 237

Query: 240 VSFSSYTYVNTLK 252
             FS Y  VN+L+
Sbjct: 238 TVFSRYMSVNSLQ 250

Involved in the second step of GPI biosynthesis. De-N-acetylation of N-acetylglucosaminyl-phosphatidylinositol.
Rattus norvegicus (taxid: 10116)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 9

>sp\|Q54C64\|PIGL_DICDI Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Dictyostelium discoideum GN=pigl PE=3 SV=1	Back alignment and function description

>sp\|Q5SX19\|PIGL_MOUSE N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Mus musculus GN=Pigl PE=2 SV=1	Back alignment and function description

>sp\|Q9Y2B2\|PIGL_HUMAN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Homo sapiens GN=PIGL PE=1 SV=1	Back alignment and function description

>sp\|A6QQ24\|PIGL_BOVIN N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Bos taurus GN=PIGL PE=2 SV=1	Back alignment and function description

>sp\|Q9HDW9\|GPI12_SCHPO Probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gpi12 PE=3 SV=1	Back alignment and function description

>sp\|P23797\|GPI12_YEAST N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GPI12 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		256
359480111		273	PREDICTED: probable N-acetylglucosaminyl	0.996	0.934	0.705	1e-104
297744323		258	unnamed protein product [Vitis vinifera]	0.992	0.984	0.704	1e-104
224120368		265	predicted protein [Populus trichocarpa]	1.0	0.966	0.678	7e-98
449441087		285	PREDICTED: N-acetylglucosaminyl-phosphat	0.984	0.884	0.638	5e-94
42566026		257	N-acetylglucosaminylphosphatidylinositol	0.988	0.984	0.643	6e-90
297817148		250	hypothetical protein ARALYDRAFT_486264 [	0.972	0.996	0.650	1e-89
388512735		258	unknown [Lotus japonicus]	0.996	0.988	0.600	5e-87
42570939		258	N-acetylglucosaminylphosphatidylinositol	0.945	0.937	0.653	6e-87
388513397		258	unknown [Medicago truncatula]	0.992	0.984	0.587	2e-86
42569383		218	N-acetylglucosaminylphosphatidylinositol	0.824	0.967	0.671	1e-78

>gi\|359480111\|ref\|XP_003632402.1\| PREDICTED: probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Vitis vinifera]	Back alignment and taxonomy information

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/258 (70%), Positives = 217/258 (84%), Gaps = 3/258 (1%)

Query: 1   MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGD---KKNVLLVIAHPDDESMFFS 57
           M+WLL+I+S ++VWVASL K   +S S S   FL  G+   K+NVLLVIAHPDDESMFFS
Sbjct: 1   MAWLLIIISVVLVWVASLCKTRQASFSPSKTVFLNNGEVLQKRNVLLVIAHPDDESMFFS 60

Query: 58  PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117
           PTI +L SR HNLH+LCMS GNADGMGNIRK+EL++A A+LK+PL+QVK+LD  DFQDGF
Sbjct: 61  PTITFLNSRGHNLHLLCMSTGNADGMGNIRKEELYQASAILKVPLQQVKILDHPDFQDGF 120

Query: 118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177
            K+WNH  LAKI+EEEV++ +ID IITFD+YGVSGHCNH DVH G+W  L+ TSERNIEA
Sbjct: 121 GKVWNHALLAKIIEEEVISHAIDTIITFDDYGVSGHCNHIDVHRGLWMLLHDTSERNIEA 180

Query: 178 WELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRK 237
           WEL++TNILRKYSGP+DIWLSILS+  Y    +HCLLN++P KSFLAM+QH SQWVWFRK
Sbjct: 181 WELVSTNILRKYSGPIDIWLSILSSMCYPSENMHCLLNKNPHKSFLAMAQHQSQWVWFRK 240

Query: 238 LFVSFSSYTYVNTLKRIN 255
           LFVSFSSYTYVN L++IN
Sbjct: 241 LFVSFSSYTYVNRLRKIN 258

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|297744323\|emb\|CBI37293.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224120368\|ref\|XP_002318312.1\| predicted protein [Populus trichocarpa] gi\|222858985\|gb\|EEE96532.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449441087\|ref\|XP_004138315.1\| PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Cucumis sativus] gi\|449477144\|ref\|XP_004154943.1\| PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|42566026|ref|NP_191372.2| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|79315492|ref|NP_001030882.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|50198821|gb|AAT70443.1| At3g58130 [Arabidopsis thaliana] gi|51972138|gb|AAU15173.1| At3g58130 [Arabidopsis thaliana] gi|332646224|gb|AEE79745.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|332646225|gb|AEE79746.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297817148\|ref\|XP_002876457.1\| hypothetical protein ARALYDRAFT_486264 [Arabidopsis lyrata subsp. lyrata] gi\|297322295\|gb\|EFH52716.1\| hypothetical protein ARALYDRAFT_486264 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|388512735\|gb\|AFK44429.1\| unknown [Lotus japonicus]	Back alignment and taxonomy information

>gi|42570939|ref|NP_973543.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|79323249|ref|NP_001031431.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|145329967|ref|NP_001077969.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|45752762|gb|AAS76279.1| At2g27340 [Arabidopsis thaliana] gi|51971593|dbj|BAD44461.1| unnamed protein product [Arabidopsis thaliana] gi|330252882|gb|AEC07976.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|330252883|gb|AEC07977.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi|330252884|gb|AEC07978.1| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|388513397\|gb\|AFK44760.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

>gi\|42569383\|ref\|NP_565647.2\| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana] gi\|330252881\|gb\|AEC07975.1\| N-acetylglucosaminylphosphatidylinositol de-N-acetylase family protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		256
TAIR\|locus:2085440		257	AT3G58130 "AT3G58130" [Arabido	0.988	0.984	0.647	2.6e-86
TAIR\|locus:2038608		258	AT2G27340 "AT2G27340" [Arabido	0.972	0.965	0.648	7.2e-84
WB\|WBGene00013131		258	Y52B11C.1 [Caenorhabditis eleg	0.820	0.813	0.422	4.3e-38
UNIPROTKB\|Q9Y2B2		252	PIGL "N-acetylglucosaminyl-pho	0.949	0.964	0.374	3.9e-37
RGD\|620437		252	Pigl "phosphatidylinositol gly	0.941	0.956	0.351	1.3e-34
UNIPROTKB\|A6QQ24		253	PIGL "N-acetylglucosaminyl-pho	0.941	0.952	0.366	9.5e-34
MGI\|MGI:2681271		252	Pigl "phosphatidylinositol gly	0.937	0.952	0.345	2.5e-33
POMBASE\|SPAPB2B4.01c		248	gpi12 "pig-L, N-acetylglucosam	0.914	0.943	0.361	4.1e-33
ASPGD\|ASPL0000060737		312	AN0049 [Emericella nidulans (t	0.449	0.368	0.398	9.6e-33
ZFIN\|ZDB-GENE-050506-60		300	pigl "phosphatidylinositol gly	0.875	0.746	0.345	1.3e-31

TAIR\|locus:2085440 AT3G58130 "AT3G58130" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
 Identities = 167/258 (64%), Positives = 198/258 (76%)

Query:     1 MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTG---DKKNVLLVIAHPDDESMFFS 57
             M+WL+V VS IV+W+AS  KI   + S S AA L  G    KKNVL VIAHPDDESMFFS
Sbjct:     1 MAWLVVSVSLIVIWLASFCKIFFRATSISGAAILDDGKTPQKKNVLFVIAHPDDESMFFS 60

Query:    58 PTINYLTSRRHNLHILCMSNGNADGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF 117
             PTINYL S   NLH+LC+S GNADGMG+IR +ELHRACAVLK+PL+Q+K+L+  + QDGF
Sbjct:    61 PTINYLASNACNLHMLCLSTGNADGMGSIRNNELHRACAVLKVPLQQLKILNHPNLQDGF 120

Query:   118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERNIEA 177
              +LW+H  L +I+EEEV    I  IITFDNYGVSGHCNHRDVH G+  +L   S RN++A
Sbjct:   121 GQLWSHDLLTEIIEEEVTKHDIHTIITFDNYGVSGHCNHRDVHRGVLKFLQTNSGRNVKA 180

Query:   178 WELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRK 237
             WEL++ NI RKY GP+DIWLSILSA +    +V  ++NE P KSF AM+QH SQWVWFRK
Sbjct:   181 WELVSLNIFRKYCGPVDIWLSILSA-KIHPSKV-IIINEQPWKSFKAMAQHLSQWVWFRK 238

Query:   238 LFVSFSSYTYVNTLKRIN 255
             LFVSFSSYTY NTL RIN
Sbjct:   239 LFVSFSSYTYANTLSRIN 256

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2038608 AT2G27340 "AT2G27340" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00013131 Y52B11C.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9Y2B2 PIGL "N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

RGD\|620437 Pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|A6QQ24 PIGL "N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2681271 Pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

POMBASE\|SPAPB2B4.01c gpi12 "pig-L, N-acetylglucosaminylphosphatidyl inositoldeacetylase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000060737 AN0049 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-050506-60 pigl "phosphatidylinositol glycan anchor biosynthesis, class L" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9HDW9	GPI12_SCHPO	3, ., 5, ., 1, ., 8, 9	0.3466	0.9179	0.9475	yes	no
Q9Y2B2	PIGL_HUMAN	3, ., 5, ., 1, ., 8, 9	0.3585	0.9492	0.9642	yes	no
O35790	PIGL_RAT	3, ., 5, ., 1, ., 8, 9	0.3517	0.9414	0.9563	yes	no
A6QQ24	PIGL_BOVIN	3, ., 5, ., 1, ., 8, 9	0.3917	0.8281	0.8379	yes	no
Q54C64	PIGL_DICDI	3, ., 5, ., 1, ., 8, 9	0.3595	0.8437	0.8372	yes	no
Q5SX19	PIGL_MOUSE	3, ., 5, ., 1, ., 8, 9	0.3438	0.9414	0.9563	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.5.1.89	LOW CONFIDENCE prediction!
3rd Layer	3.5.1	0.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		256
pfam02585		115	pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	6e-27
COG2120		237	COG2120, COG2120, Uncharacterized proteins, LmbE h	6e-23
TIGR04000		217	TIGR04000, thiol_BshB2, bacillithiol biosynthesis	8e-07
TIGR03445		284	TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inosit	0.001

>gnl\|CDD\|217123 pfam02585, PIG-L, GlcNAc-PI de-N-acetylase	Back alignment and domain information

 Score =  100 bits (251), Expect = 6e-27
 Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)

Query: 43  LLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD---------GMGNIRKDELHR 93
           L++ AHPDDE +    TI  L  + H +H++ +++G A           +G IR+ E   
Sbjct: 1   LVIAAHPDDEVLGAGGTIARLAEQGHEVHVVTLTDGEAGSNRLGLEEEELGAIRRREARA 60

Query: 94  ACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGH 153
           A  +L +  E+V  L   D  DG  + W+ + L   +   +     D+++T D     GH
Sbjct: 61  AAEILGV--ERVIFL---DLPDGGLREWDLEELLAALARLIREIRPDVVLTHDPGD--GH 113

Query: 154 CN 155
            +
Sbjct: 114 PD 115

Members of this family are related to PIG-L an N-acetylglucosaminylphosphatidylinositol de-N-acetylase (EC:3.5.1.89) that catalyzes the second step in GPI biosynthesis. Length = 115

>gnl\|CDD\|225031 COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	Back alignment and domain information

>gnl\|CDD\|188515 TIGR04000, thiol_BshB2, bacillithiol biosynthesis deacetylase BshB2	Back alignment and domain information

>gnl\|CDD\|234214 TIGR03445, mycothiol_MshB, N-acetyl-1-D-myo-inositol-2-amino-2-deoxy-alpha-D- glucopyranoside deacetylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		256
KOG3332		247	consensus N-acetylglucosaminyl phosphatidylinosito	100.0
TIGR03446		283	mycothiol_Mca mycothiol conjugate amidase Mca. Myc	100.0
COG2120		237	Uncharacterized proteins, LmbE homologs [Function	100.0
TIGR03445		284	mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy	100.0
PRK02122		652	glucosamine-6-phosphate deaminase-like protein; Va	100.0
PF02585		128	PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR0037	99.97
PF01012		164	ETF: Electron transfer flavoprotein domain; InterP	94.67
cd01715		168	ETF_alpha The electron transfer flavoprotein (ETF)	92.58
PF12683		275	DUF3798: Protein of unknown function (DUF3798); In	92.11
cd01985		181	ETF The electron transfer flavoprotein (ETF) serve	90.48
PF04007		335	DUF354: Protein of unknown function (DUF354); Inte	90.48
PRK00726		357	murG undecaprenyldiphospho-muramoylpentapeptide be	86.9
PF00763		117	THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cycloh	83.06
cd03796		398	GT1_PIG-A_like This family is most closely related	82.51
cd01714		202	ETF_beta The electron transfer flavoprotein (ETF)	82.4
PF13477		139	Glyco_trans_4_2: Glycosyl transferase 4-like	82.35
cd03808		359	GT1_cap1E_like This family is most closely related	81.75

>KOG3332 consensus N-acetylglucosaminyl phosphatidylinositol de-N-acetylase [Cell wall/membrane/envelope biogenesis]	Back alignment and domain information

Probab=100.00  E-value=3.6e-56  Score=375.75  Aligned_cols=244  Identities=47%  Similarity=0.723  Sum_probs=211.4

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhcCCcccccccccCCCCCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCC
Q 025219            1 MSWLLVIVSTIVVWVASLFKILNSSRSQSNAAFLTTGDKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA   80 (256)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~   80 (256)
                      |.|..+....++++++. +-|..++...+++   +.....|+|++.||||||+||+||||..|.+.|++|+++|+++|++
T Consensus         3 ~ml~~~~~l~~~l~vl~-~i~~~~~~~r~~~---~l~~~sriLLviAhpdDE~mFFsPtI~~L~~~~~~v~iLClSnGN~   78 (247)
T KOG3332|consen    3 AMLKKISLLVTFLLVLL-VIFVSSIRRRSRG---KLLAESRILLVIAHPDDESMFFSPTILYLTSGACNVHILCLSNGNA   78 (247)
T ss_pred             hHHHHHHHHHHHHHHHH-Hhhhccccccccc---cccccceEEEEEeccCccccchhhHHHHHhcCCccEEEEEecCCCc
Confidence            34655555555544443 4445555543443   3466778999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCccccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHH
Q 025219           81 DGMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVH  160 (256)
Q Consensus        81 ~~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~  160 (256)
                      +|+|++|++|+.+||..||+|.+++..++.|+++||+++.|+++.+.+.+.+.++..+.|+|+|||..|++||++|++++
T Consensus        79 dg~G~iR~kEL~ra~~~lgi~~s~v~~l~~~~f~Dg~~~~Wd~~~v~~~l~~~ie~~~~~~iiTFD~~GVSgH~NH~~~y  158 (247)
T KOG3332|consen   79 DGLGKIREKELHRACAVLGIPLSNVVVLDTPFFQDGPGEDWDPDAVASILLQHIEVLNIDTIITFDNYGVSGHCNHIACY  158 (247)
T ss_pred             cccchHHHHHHHHHHHHHCCchhheEEecCCcCCCCcccccCHHHHHHHHHHHHHccCccEEEEecCCCcCCCCccHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhh-cCCCceeEEEecchhhhhhcCCChhhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhhhHHhhh
Q 025219          161 HGIWSYLNG-TSERNIEAWELMTTNILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWFRKLF  239 (256)
Q Consensus       161 ~av~~a~~~-~~~~~~~~~e~~s~~~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~w~r~l~  239 (256)
                      .++..++.. ..++.+.++.+.|.|.+|||.+++|++.+...       +...++.-+..+..+||.||+||++||||+|
T Consensus       159 ~av~~l~~~~k~pk~v~~~~L~S~Ni~rKY~s~lDi~~slis-------s~~~~i~kq~~~~~~aM~~H~SQmvWFRyly  231 (247)
T KOG3332|consen  159 AAVDCLIDGLKLPKGVKYLTLKSINIFRKYISILDILLSLIS-------STVLFINKQMAMAFKAMMCHRSQMVWFRYLY  231 (247)
T ss_pred             hhHHHHhhhccCCCceEEEEEeehHHHHHhhhHHHhHHHHhc-------ceeEEEehhHHHHHHHHHHHHHHhHHHHHHH
Confidence            998877643 34578999999999999999999999988662       3344565567788999999999999999999


Q ss_pred             hhhhcceeeeceeecC
Q 025219          240 VSFSSYTYVNTLKRIN  255 (256)
Q Consensus       240 ~~fsry~~~N~~~~i~  255 (256)
                      ++|||||++|+|.+|+
T Consensus       232 i~FSrym~vN~l~~in  247 (247)
T KOG3332|consen  232 ILFSRYMFVNSLDVIN  247 (247)
T ss_pred             HHhhheeeeeeeeecC
Confidence            9999999999999875

>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca	Back alignment and domain information

>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]	Back alignment and domain information

>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase	Back alignment and domain information

>PRK02122 glucosamine-6-phosphate deaminase-like protein; Validated	Back alignment and domain information

>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3	Back alignment and domain information

>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems	Back alignment and domain information

>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	Back alignment and domain information

>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria	Back alignment and domain information

>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	Back alignment and domain information

>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length	Back alignment and domain information

>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional	Back alignment and domain information

>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)	Back alignment and domain information

>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	Back alignment and domain information

>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like	Back alignment and domain information

>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		256
2ixd_A		242	LMBE-related protein; hexamer, deacetylase, rossma	3e-17
1uan_A		227	Hypothetical protein TT1542; rossmann-like, struct	2e-15
1q74_A		303	1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- gluco	1e-14
3dfi_A		270	Pseudoaglycone deacetylase DBV21; single alpha-bet	2e-10
3dff_A		273	Teicoplanin pseudoaglycone deacetylases ORF2; lipo	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08

>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus} Length = 242	Back alignment and structure

 Score = 77.5 bits (191), Expect = 3e-17
 Identities = 21/125 (16%), Positives = 48/125 (38%), Gaps = 11/125 (8%)

Query: 39  KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA--DGMGNIRKDELHRACA 96
             ++L   AH DD  +  + TI   T + + + I  ++  +   +G   +RK+E   A  
Sbjct: 3   GLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAAR 62

Query: 97  VLKIPLEQVKVLDLVDFQDGFDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNH 156
           ++ +  +    L + D       L+  +   + + + +      L+     Y    H +H
Sbjct: 63  IMGV--KTRLNLAMPD-----RGLYMKEEYIREIVKVIRTYKPKLVFA--PYYEDRHPDH 113

Query: 157 RDVHH 161
            +   
Sbjct: 114 ANCAK 118

PyMOL of 2ixd

>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1 Length = 227	Back alignment and structure

>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A* Length = 303	Back alignment and structure

>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus} Length = 270	Back alignment and structure

>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A* Length = 273	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		256
2ixd_A		242	LMBE-related protein; hexamer, deacetylase, rossma	100.0
1q74_A		303	1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- gluco	100.0
3dfi_A		270	Pseudoaglycone deacetylase DBV21; single alpha-bet	100.0
1uan_A		227	Hypothetical protein TT1542; rossmann-like, struct	100.0
3dff_A		273	Teicoplanin pseudoaglycone deacetylases ORF2; lipo	100.0
3ih5_A		217	Electron transfer flavoprotein alpha-subunit; alph	92.76
3tsa_A		391	SPNG, NDP-rhamnosyltransferase; glycosyltransferas	89.64
3otg_A		412	CALG1; calicheamicin, TDP, structural genomics, PS	87.31
2iw1_A		374	Lipopolysaccharide core biosynthesis protein RFAG;	85.43
1f0k_A		364	MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe	85.13
1vgv_A		384	UDP-N-acetylglucosamine 2-epimerase; structural ge	84.71
3oti_A		398	CALG3; calicheamicin, TDP, structural genomics, PS	83.82
1efv_A		315	Electron transfer flavoprotein; electron transport	83.54
4fzr_A		398	SSFS6; structural genomics, PSI-biology, protein s	83.12
3ia7_A		402	CALG4; glycosysltransferase, calicheamicin, enediy	82.01
3okp_A		394	GDP-mannose-dependent alpha-(1-6)-phosphatidylino	81.74
1v4v_A		376	UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t	81.24
3rsc_A		415	CALG2; TDP, enediyne, structural genomics, PSI-2,	80.54
1efp_B		252	ETF, protein (electron transfer flavoprotein); ele	80.47

>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}	Back alignment and structure

Probab=100.00  E-value=9.7e-36  Score=260.86  Aligned_cols=166  Identities=13%  Similarity=0.116  Sum_probs=135.0

Q ss_pred             CCcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCCC--chHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCC
Q 025219           39 KKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNADG--MGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDG  116 (256)
Q Consensus        39 ~~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~~--~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg  116 (256)
                      ++++|+|+||||||+|||||||++++++|.+|++||+|+|+.+.  .+++|++|+++||++||+  +.+.+|++||..  
T Consensus         3 ~~~vL~v~aHPDDe~l~~Ggtia~~~~~G~~V~vv~lT~G~~g~~~~~~~R~~E~~~A~~~LGv--~~~~~L~~~D~~--   78 (242)
T 2ixd_A            3 GLHILAFGAHADDVEIGMAGTIAKYTKQGYEVGICDLTEADLSSNGTIELRKEEAKVAARIMGV--KTRLNLAMPDRG--   78 (242)
T ss_dssp             CCSEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCSSSCHHHHHHHHHHHHHHHTC--CEEEEEEECTTC--
T ss_pred             CccEEEEEeCCChHHHhHHHHHHHHHHCCCeEEEEEEcCCCCCCCCCHHHHHHHHHHHHHHcCC--CeEEECCCCCCC--
Confidence            46899999999999999999999999999999999999999863  568999999999999999  557899999864  


Q ss_pred             ccccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCC------------CceeEEEecchh
Q 025219          117 FDKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSE------------RNIEAWELMTTN  184 (256)
Q Consensus       117 ~~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~------------~~~~~~e~~s~~  184 (256)
                      +   .+.+++.+.|.++|++++||+|+||+  +.|+|+||+++++++.+|++..+.            +.++.|+.    
T Consensus        79 ~---~~~~~~~~~l~~~ir~~~PdvV~t~~--~~d~H~DH~~~~~~v~~A~~~a~~~~~~~~~~~~~~~~l~~y~~----  149 (242)
T 2ixd_A           79 L---YMKEEYIREIVKVIRTYKPKLVFAPY--YEDRHPDHANCAKLVEEAIFSAGIRKYMPELSPHRVESFYNYMI----  149 (242)
T ss_dssp             C---CCCHHHHHHHHHHHHHHCCSEEEEEC--SCSSSHHHHHHHHHHHHHHHHHTCTTSSTTSCCCCCSEEEEECC----
T ss_pred             C---CChHHHHHHHHHHHHHcCCCEEEECC--CCCCChhHHHHHHHHHHHHHHcCCccccCcCCCCCcceEEEEec----
Confidence            2   23478899999999999999999995  568999999999999999754331            12222221    


Q ss_pred             hhhhcCCChhhHHHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhhhH
Q 025219          185 ILRKYSGPLDIWLSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWF  235 (256)
Q Consensus       185 ~~~~y~~~~d~~~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~w~  235 (256)
                          +.              ...++..+.++...++|++||++|+||+.+.
T Consensus       150 ----~~--------------~~~p~~~vdis~~~~~K~~Al~~h~SQ~~~~  182 (242)
T 2ixd_A          150 ----NG--------------FHKPNFCIDISEYLSIKVEALEAYESQFSTG  182 (242)
T ss_dssp             ----SS--------------CCCCSEEEECGGGHHHHHHHHHTCHHHHCCT
T ss_pred             ----cC--------------CCCCCEEEECcHHHHHHHHHHHHHHHhccCC
Confidence                00              0113445566667899999999999999853

PyMOL of 2ixd

>1q74_A 1D-MYO-inosityl 2-acetamido-2-deoxy-alpha-D- glucopyranoside deacetylase (MSHB); rossmann fold, zinc aminohydrolase; HET: PE4; 1.70A {Mycobacterium tuberculosis} SCOP: c.134.1.1 PDB: 1q7t_A*	Back alignment and structure

>3dfi_A Pseudoaglycone deacetylase DBV21; single alpha-beta domain, hydrolase; 2.10A {Actinoplanes teichomyceticus}	Back alignment and structure

>1uan_A Hypothetical protein TT1542; rossmann-like, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.00A {Thermus thermophilus} SCOP: c.134.1.1	Back alignment and structure

>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*	Back alignment and structure

>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}	Back alignment and structure

>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*	Back alignment and structure

>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*	Back alignment and structure

>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*	Back alignment and structure

>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*	Back alignment and structure

>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*	Back alignment and structure

>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*	Back alignment and structure

>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*	Back alignment and structure

>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*	Back alignment and structure

>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}	Back alignment and structure

>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*	Back alignment and structure

>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3	Back alignment and structure

>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*	Back alignment and structure

>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		256
d1q74a_		297	c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy	3e-16
d1uana_		227	c.134.1.1 (A:) Hypothetical protein TT1542 {Thermu	2e-10

>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 297	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: LmbE-like
superfamily: LmbE-like
family: LmbE-like
domain: 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 74.3 bits (181), Expect = 3e-16
 Identities = 33/152 (21%), Positives = 53/152 (34%), Gaps = 30/152 (19%)

Query: 38  DKKNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNA----------------D 81
           +   +L V AHPDDES+    TI + TSR   +H++  + G                  D
Sbjct: 1   ETPRLLFVHAHPDDESLSNGATIAHYTSRGAQVHVVTCTLGEEGEVIGDRWAQLTADHAD 60

Query: 82  GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQ-----DGFDKL-------WNHKSLAKI 129
            +G  R  EL  A   L +       L            G D+         + +     
Sbjct: 61  QLGGYRIGELTAALRALGVS--APIYLGGAGRWRDSGMAGTDQRSQRRFVDADPRQTVGA 118

Query: 130 VEEEVVNCSIDLIITFDNYGVSGHCNHRDVHH 161
           +   +      +++T+D  G  GH +H   H 
Sbjct: 119 LVAIIRELRPHVVVTYDPNGGYGHPDHVHTHT 150

PyMOL of d1q74a_

>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]} Length = 227	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		256
d1uana_		227	Hypothetical protein TT1542 {Thermus thermophilus	100.0
d1q74a_		297	1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucop	100.0
d3clsd1		192	Large, alpha subunit of electron transfer flavopro	89.16
d1efva1		188	Large, alpha subunit of electron transfer flavopro	87.84
d3clsc1		262	Small, beta subunit of electron transfer flavoprot	84.38
d2qwxa1		230	Quinone reductase type 2 (menadione reductase) {Hu	82.4

>d1uana_ c.134.1.1 (A:) Hypothetical protein TT1542 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: LmbE-like
superfamily: LmbE-like
family: LmbE-like
domain: Hypothetical protein TT1542
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2e-37  Score=266.88  Aligned_cols=176  Identities=15%  Similarity=0.098  Sum_probs=133.9

Q ss_pred             CcEEEEecCchhhhcchHHHHHHHHhCCCcEEEEEEeCCCCC--CchHHHHHHHHHHHHHcCCCCCcEEEccCCCCCCCc
Q 025219           40 KNVLLVIAHPDDESMFFSPTINYLTSRRHNLHILCMSNGNAD--GMGNIRKDELHRACAVLKIPLEQVKVLDLVDFQDGF  117 (256)
Q Consensus        40 ~~vLvv~aHPDDE~l~~Ggtl~~l~~~G~~V~vv~lT~G~~~--~~~~~R~~E~~~A~~~LGv~~~~~~~l~~~d~~dg~  117 (256)
                      ++||+|+||||||++||||||++++++|++|+++++|+|+.+  +..++|++|+.+|++.||+  +.+.+|++||.+  +
T Consensus         2 ~~VLvi~aHPDDe~lg~GGtiak~~~~G~~V~vv~~T~G~~~~~~~~~~R~~E~~~a~~~lG~--~~~~~l~~~d~~--l   77 (227)
T d1uana_           2 LDLLVVAPHPDDGELGCGGTLARAKAEGLSTGILDLTRGEMGSKGTPEEREKEVAEASRILGL--DFRGNLGFPDGG--L   77 (227)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHHHHHTTCCEEEEEEECCTTTCCSCHHHHHHHHHHHHHHHTC--SEEEEEEECTTC--C
T ss_pred             ceEEEEEeCCChHHHHHHHHHHHHHHcCCeEEEEEEeCCCCCCCCchhhhHHHHHhhhhhccc--chheeeeecccc--c
Confidence            589999999999999999999999999999999999999876  3578999999999999999  678999999854  2


Q ss_pred             cccCChHHHHHHHHHHHHhcCCCEEEecCCCCCCCCchHHHHHHHHHHHHhhcCCCc-eeEEEecchhhhhhcCCChhhH
Q 025219          118 DKLWNHKSLAKIVEEEVVNCSIDLIITFDNYGVSGHCNHRDVHHGIWSYLNGTSERN-IEAWELMTTNILRKYSGPLDIW  196 (256)
Q Consensus       118 ~~~~~~~~l~~~l~~~i~~~~Pd~V~t~d~~g~d~H~DH~~v~~av~~a~~~~~~~~-~~~~e~~s~~~~~~y~~~~d~~  196 (256)
                         .+..++...|.++|++++||+||||  ++.|+|+||+.+++++.+|++..+... ...++......+-.|...    
T Consensus        78 ---~~~~~~~~~l~~~i~~~~PdiV~t~--~~~d~H~DH~~~~~av~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~----  148 (227)
T d1uana_          78 ---ADVPEQRLKLAQALRRLRPRVVFAP--LEADRHPDHTAASRLAVAAVHLAGLRKAPLEGEPFRVERLFFYPGN----  148 (227)
T ss_dssp             ---CCCHHHHHHHHHHHHHHCEEEEEEE--CSCCSSHHHHHHHHHHHHHHHHHTCTTSSCSSCCCCCSEEEEECCS----
T ss_pred             ---ccchhhhhhhhhheecccccEEEec--CccccccchhhHHHHHHHHHHHhcCCccccccccccceeeeecccc----
Confidence               2446778889999999999999999  567899999999999999986543211 111111000000001100    


Q ss_pred             HHhhhhhcccCCceeEEEcCCHHHHHHHHHhchhhhhhH
Q 025219          197 LSILSATQYRRGQVHCLLNEHPKKSFLAMSQHHSQWVWF  235 (256)
Q Consensus       197 ~~~~~~~~~~~~~~~~~v~~~~~~K~~Am~~H~SQ~~w~  235 (256)
                             ....++..++++...++|++||+||+||+.+.
T Consensus       149 -------~~f~Pn~~vdIs~~~~~K~~Al~~~~SQ~~~~  180 (227)
T d1uana_         149 -------HPFAPSFLVKISAFIDQWEAAVLAYRSQFTGE  180 (227)
T ss_dssp             -------SCCCCSEEEECGGGHHHHHHHHHTCHHHHC--
T ss_pred             -------ccCCCCeEEechHHHHHHHHHHHHHHHHhccc
Confidence                   00113455666777899999999999998643

PyMOL of d1uana_

>d1q74a_ c.134.1.1 (A:) 1D-myo-inosityl 2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase MshD {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d3clsd1 c.26.2.3 (D:1-192) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure

>d1efva1 c.26.2.3 (A:20-207) Large, alpha subunit of electron transfer flavoprotein ETFP, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d3clsc1 c.26.2.3 (C:1-262) Small, beta subunit of electron transfer flavoprotein ETFP {Methylophilus methylotrophus [TaxId: 17]}	Back information, alignment and structure

>d2qwxa1 c.23.5.3 (A:1-230) Quinone reductase type 2 (menadione reductase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure