Citrus Sinensis ID: 025256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHccccEEcccccccccccccccEEEcccccEEEEcccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccccccccccEEEEEcccccccccccccccHHHHHcccccEEEccccccccEEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEEccEEEcccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghdgflsFSWIrrntnaqpvfgktrslvqnKTSLKVLCSQQREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINKiwpqkassfdsqvkppdvatvlpmdgfhLYLSqldamedpkeaharrgapwtfnpLLLLNCLKNLrnqgsvyapsfdhgvgdpveddILVGLQHKVvivdgnylfldggvwkdvssmfdekw
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsgHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIwpqkassfdsqvkPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFnpllllnclknlrnQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered region (IsUnstruct)
**********************************GFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK***********DVATVLPMDGFHLYLSQLDA*********RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV********
Disordered Region (DISOPRED)
**********************************GF**FSW*******************************REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISEMBL)
****************************LPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK********KPPDVATVLPMDGFHLYLSQLDAME********RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISPRO)
********************STPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.525	0.570	0.398	2e-26
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.643	0.472	0.269	2e-14
P11664	237	Uncharacterized protein Y	N/A	no	0.603	0.649	0.346	1e-12
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
B3LUL5	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
P43591	353	ATP-dependent kinase YFH7	yes	no	0.384	0.277	0.291	1e-10
C8Z7U0	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.494	0.336	0.272	1e-10

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 14/148 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct: 31  LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             ++P++A A RGA WTF+  L  + ++ ++      +YAPSFDH +GDPV DDI V  +
Sbjct: 79  RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++++I +GNYL L+   W D   ++D K
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 51/215 (23%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
           IP  E + + +V +        Q   P   +  N   + +VG+ G P +           
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130

Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-- 187
           R+  + P + S+ D ++     A ++PMDGFHL    LD  +DP EAH RRG+P TF+  
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185

Query: 188 ------PLLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
                  LL   C         K   + G               S+Y P FDH + DP  
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245

Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
               V    ++++++G YL LD   W+D+   F +
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKD 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 25/179 (13%)

Query: 78  VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL           W
Sbjct: 12  IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63

Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
              A   D ++  P + T LPMDGFH Y S LDA     +    +GAP TF+   +    
Sbjct: 64  EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112

Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
           +NLR   +G    P +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCD 169

Escherichia coli (strain K12) (taxid: 83333)

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 43/169 (25%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G  G P A   +         N + P + SSF         A ++PMDGFHL    L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197

Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS------------------------ 203
            + ++P+EAH RRG+P TF+        K L    +                        
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257

Query: 204 -VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251
            +  P FDH + DP  D   +    ++VI++G YL  D   W+ V  + 
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEIL 306

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255559925	312	ATP binding protein, putative [Ricinus c	0.992	0.810	0.710	1e-98
225437219	312	PREDICTED: putative uridine kinase C227.	0.992	0.810	0.679	2e-91
449452236	309	PREDICTED: putative uridine kinase C227.	0.898	0.741	0.672	3e-88
449519647	251	PREDICTED: putative uridine kinase C227.	0.898	0.912	0.672	4e-88
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.960	0.792	0.593	3e-80
224082738	231	predicted protein [Populus trichocarpa]	0.678	0.748	0.809	1e-79
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.945	0.800	0.638	2e-79
42561642	301	P-loop containing nucleoside triphosphat	0.952	0.807	0.619	6e-79
255633506	233	unknown [Glycine max]	0.890	0.974	0.588	7e-71
357157235	322	PREDICTED: putative uridine kinase C227.	0.733	0.580	0.657	2e-70

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 182/256 (71%), Positives = 208/256 (81%), Gaps = 3/256 (1%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS +R++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKW 255
             G WKD+SSMFDEKW
Sbjct: 239 GEGAWKDISSMFDEKW 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (874), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 206/256 (80%), Gaps = 3/256 (1%)

Query: 1   MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLV 59
           M+V+S ST+ +   SSSS+ E   L++ ++P  +   +  S  RR+   QP+FG TRS  
Sbjct: 1   MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59  GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KSTLA+EV  R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY  QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P  LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKW 255
             G WK+VSSMFDEKW
Sbjct: 239 QEGDWKEVSSMFDEKW 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 189/232 (81%), Gaps = 3/232 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  330 bits (846), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 156/232 (67%), Positives = 189/232 (81%), Gaps = 3/232 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  303 bits (777), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 155/261 (59%), Positives = 186/261 (71%), Gaps = 16/261 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYLFLDGGVWKDVSSMFDEKW 255
           NYL L+ GVWK++SS+FDEKW
Sbjct: 231 NYLLLEDGVWKEISSLFDEKW 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 140/173 (80%), Positives = 155/173 (89%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
           D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKW
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKW 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 192/257 (74%), Gaps = 16/257 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
           GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
           RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ 
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226

Query: 239 LDGGVWKDVSSMFDEKW 255
           L+ G WKD+S MFDEKW
Sbjct: 227 LEEGSWKDISDMFDEKW 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 189/255 (74%), Gaps = 12/255 (4%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S        RG        F    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPELSRFRG--------FKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
           GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query: 241 GGVWKDVSSMFDEKW 255
            G WKD+S MFDEKW
Sbjct: 229 EGSWKDISDMFDEKW 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633506|gb|ACU17111.1| unknown [Glycine max]

 Score =  273 bits (697), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 143/243 (58%), Positives = 170/243 (69%), Gaps = 16/243 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYL 237
           NYL
Sbjct: 231 NYL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon]

 Score =  271 bits (692), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 123/187 (65%), Positives = 150/187 (80%)

Query: 69  CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
           C Q++  P +EA+ M+EVYDALA+ LL       +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76  CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135

Query: 129 RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188
           RR+N  W +K ++  S +   D+AT+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195

Query: 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248
            L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V  QHK+VIV+GNYL L+  +W+D+ 
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255

Query: 249 SMFDEKW 255
            MFDEKW
Sbjct: 256 GMFDEKW 262

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.952	0.807	0.592	3.1e-74
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.525	0.570	0.391	2.6e-24
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.627	0.677	0.392	6.8e-24
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.545	0.615	0.367	1.6e-22
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.560	0.611	0.352	4.9e-21
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.396	0.173	0.358	6.8e-14
SGD|S000001903	353	YFH7 "Putative kinase with sim	0.529	0.382	0.275	2.2e-09
UNIPROTKB|P11664	237	yggC "conserved protein with n	0.376	0.405	0.375	3.4e-07

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 151/255 (59%), Positives = 180/255 (70%)

Query:     1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
             M+VSS ST PR C S S     P    EL S   GF    W   + +  P+    R   +
Sbjct:     1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query:    61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
             N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct:    49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query:   121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
             ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct:   109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query:   181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
             GAPWTF              +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct:   169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query:   241 GGVWKDVSSMFDEKW 255
              G WKD+S MFDEKW
Sbjct:   229 EGSWKDISDMFDEKW 243

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 58/148 (39%), Positives = 84/148 (56%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
             ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct:    31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query:   169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
               ++P++A A RGA WTF                   +YAPSFDH +GDPV DDI V  +
Sbjct:    79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query:   227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             ++++I +GNYL L+   W D   ++D K
Sbjct:   139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 69/176 (39%), Positives = 95/176 (53%)

Query:    90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
             LA+++     LA     + ++G+AG PGAGK+TLA  VV  +  I   +  + D +    
Sbjct:     9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64

Query:   150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
                T +PMDG+HL  +QL AM DP+ A  RRGA +TF                      Q
Sbjct:    65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122

Query:   202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             G+V  YAPSFDH V DPV D I +  + ++VI++GNYL LD   WK  +S+ DE W
Sbjct:   123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIW 178

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/155 (36%), Positives = 86/155 (55%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
             S+   ++++ LAG PG+GK+T A  + +R+        S+F   V       VL  DGFH
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73

Query:   162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
             LY S+L  M DPKEA  RRGAP+TF              +  ++ APSFDH + DP+EDD
Sbjct:    74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133

Query:   221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             I++     ++I++GNY+ L    W ++ +  D+ W
Sbjct:   134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDDTW 168

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/156 (35%), Positives = 85/156 (54%)

Query:   105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
             N + ++ ++G PG+GK+ LA  + RRIN    +K  + +  +    +A  +PMDG+HL  
Sbjct:    22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73

Query:   165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
             +QL  M DP+ A ARRGA +TF                     +++APSFDH V DPV++
Sbjct:    74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133

Query:   220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             DI +    +V+  +GNYL L+   W   + + DE W
Sbjct:   134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDELW 169

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 42/117 (35%), Positives = 60/117 (51%)

Query:   152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
             A VL MDGFHL  S+LD + + +  EA+ RRGAPWTF                       
Sbjct:    74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133

Query:   196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
                   G +YAP+F H   DP+ + I++     +VI++GNYL LD   W+D++ + D
Sbjct:   134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVD 190

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 41/149 (27%), Positives = 70/149 (46%)

Query:    40 SWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM--DEVYDALAQRLLPT 97
             +++  + N   V  + + +V    SLK L    +   ++E + +  D V D   Q +  +
Sbjct:    54 TFLSEHPNVIEVNDRLKPMVNLVDSLKTL-QPNKVAEMIENQGLFKDHVEDVNFQPVKYS 112

Query:    98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157
             +  ++N     +V   G   A +       V  +NK+      + DS     ++A ++PM
Sbjct:   113 ALTSNNEECTAVVARGGTANAIRIAAVDNPVN-VNKL------AQDSI----NIAQIVPM 161

Query:   158 DGFHLYLSQLDAMEDPKEAHARRGAPWTF 186
             DGFHL    LD  +DP+ AH RRG+P TF
Sbjct:   162 DGFHLSRRCLDLFKDPQTAHKRRGSPSTF 190

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016310 "phosphorylation" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 39/104 (37%), Positives = 51/104 (49%)

Query:   149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
             P + T LPMDGFH Y S LDA     +    +GAP TF              +G    P 
Sbjct:    74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127

Query:   209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
             +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct:   128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCD 169

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	1e-39
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	3e-33
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	3e-11
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	4e-08
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	4e-08
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	5e-06
TIGR00235	207	TIGR00235, udk, uridine kinase	2e-05
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	2e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	2e-04
cd02025	220	cd02025, PanK, Pantothenate kinase (PanK) catalyze	7e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	7e-04
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	0.001
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	0.001
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.003
PLN02348	395	PLN02348, PLN02348, phosphoribulokinase	0.004
pfam03308	267	pfam03308, ArgK, ArgK protein	0.004

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score =  136 bits (345), Expect = 1e-39
 Identities = 68/180 (37%), Positives = 94/180 (52%), Gaps = 19/180 (10%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   + +   
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59

Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
                          A  +PMDGFHL  + LDA         R+GAP TF+   L   L+
Sbjct: 60  ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105

Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            LR     VY P FD  + DPV D I+V    ++VIV+GNYL LD   W+ ++ +FD   
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTI 165

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score =  121 bits (306), Expect = 3e-33
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
           L +N      I+G+AG    GKST A  +++ +   WP+           P V  V  MD
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121

Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
           GFH   + LD         AR+G P +++   LL  L +++     V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177

Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
            D   V  Q  ++IV+GN +  DG  W  +S  FD
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFD 212

Length = 283

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 61.1 bits (149), Expect = 3e-11
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E+  ++                      V+ +D ++   S L 
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E           P  F+  LL+  LK+L+    V  P +D+       + I V     
Sbjct: 54  FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VVIV+G  L  D    + +  + D K
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLK 131

Length = 218

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 51.8 bits (125), Expect = 4e-08
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 36/152 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E++ ++                      ++  D ++  LS   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41

Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
             E+ +E       H      + F+  LL++ L++L+N  SV  P +D      +++ + 
Sbjct: 42  -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95

Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           V     V+I++G     D    K++  + D K
Sbjct: 96  VY-PADVIILEGILALYD----KELRDLMDLK 122

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  GAGK+T    V R    I       F  +  P         D FH Y     
Sbjct: 1   IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46

Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
               ED K A        +P   +  LL    K L+  GS   P  +   G  DP   ++
Sbjct: 47  DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106

Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           + G    ++  +G    L G   + V+ + D K
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLK 133

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           +VG+AGP G+GK+T A +     R+N I P    S D    P         DG + + S 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
           LD                    LL  N L +L N   V  P +D   G       L    
Sbjct: 58  LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98

Query: 227 HKVVIVDGNY 236
             VVI++G Y
Sbjct: 99  SGVVILEGIY 108

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  G+GK+T+A ++  ++ K+                   ++  D ++   S L 
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50

Query: 169 AMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
            M + K+    H     P  F+  LL   LKNL+N   +  P +D+      ++ + +  
Sbjct: 51  EMAERKKTNFDH-----PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE- 104

Query: 226 QHKVVIVDGNYLFLD 240
              VVI++G     D
Sbjct: 105 PKDVVILEGIMPLFD 119

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVG++GP G+GKSTL+A +VR +     ++ ++               +D    YL+  D
Sbjct: 52  IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96

Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 220
            +   ++ +     RG P T +P L LN L  +   G  V  P FD     G GD     
Sbjct: 97  RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156

Query: 221 ILVGLQHKVVIVDG 234
             +  +  +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170

Length = 300

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G+AG  G+GK+T+A+ +   +                   +A V+P D ++   S L
Sbjct: 7   IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50

Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
              E+  +    H     P  F+  LL+  LK L+   ++  P +D+      ++ I V 
Sbjct: 51  S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104

Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               V+I++G  L  D    + +  + D K
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIK 129

Length = 209

>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 26/150 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
           I+G+AG    GKST  A V++ +   WP   +         ++ T    DGF LY    L
Sbjct: 1   IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
            +   M+       R+G P +++   LL  LK++++    V  P + H   D +  +   
Sbjct: 48  IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100

Query: 224 GLQHKVVIVDG-NYLFLDGGVWKDVSSMFD 252
             Q  ++I++G N L         VS  FD
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFD 130

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 41/154 (26%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
           I+G+AG  G GKST     +RR+  ++              D+ TV+ +D +H       
Sbjct: 1   IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44

Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
             + + A+ DP+  +        F+  L+   LK L+   ++  P ++H  G  DP E  
Sbjct: 45  KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91

Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD 252
            L+     +V+++G +   D  V +  D S   D
Sbjct: 92  -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLD 123

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 54/167 (32%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
           IVG++G   +GK+TLA    + + +I P   +            + ++       K  DV
Sbjct: 1   IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53

Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
              L M+     +S LD   E                        K LR+ G+   P  +
Sbjct: 54  LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91

Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                 +   + D+L      ++IVDG  L+      K +  +FD +
Sbjct: 92  FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIR 134

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
           ++GLA   G GKST     +RR+  ++     P K  + DS     D  TV+ +D +H  
Sbjct: 51  VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105

Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
              LD     KE       P   N  L+   +K L+   +V  P ++H  G+ DP E   
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158

Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD 252
              L    K+++++G +   D    + V  + D
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLD 184

Length = 395

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.98
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.98
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.98
cd03269	210	ABC_putative_ATPase This subfamily is involved in	99.98
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	99.98
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.98
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.98
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	99.98
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.98
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.98
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.98
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.98
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.98
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	99.98
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.98
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.97
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.97
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.97
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.97
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.97
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.97
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.97
PRK10908	222	cell division protein FtsE; Provisional	99.97
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.97
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.97
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	99.97
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.97
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.97
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.97
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.97
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.97
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.97
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.97
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.97
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.97
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.97
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.97
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.97
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.97
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.97
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.97
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.97
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.97
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.97
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.97
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.97
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.97
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.97
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.97
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.97
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.97
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.97
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.97
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.97
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.97
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.97
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.97
COG4181	228	Predicted ABC-type transport system involved in ly	99.97
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.97
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.97
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.97
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.97
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.97
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.97
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.97
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.97
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.97
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.97
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.97
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.97
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.97
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.97
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.97
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.96
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.96
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.96
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.96
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.96
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.96
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.96
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.96
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.96
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.96
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.96
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.96
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.96
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.96
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.96
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.96
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.96
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.96
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.96
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.96
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.96
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.96
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.96
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.96
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.95
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.95
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.95
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.95
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.95
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.95
PRK10938	490	putative molybdenum transport ATP-binding protein	99.95
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.95
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.95
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.95
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.95
PRK11147	635	ABC transporter ATPase component; Reviewed	99.95
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.95
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.95
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.95
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.95
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.95
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.95
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.95
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.95
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.95
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.95
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.95
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK11147	635	ABC transporter ATPase component; Reviewed	99.95
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.95
PRK13409	590	putative ATPase RIL; Provisional	99.95
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.95
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.94
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.94
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.94
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.94
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.94
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.94
COG4559	259	ABC-type hemin transport system, ATPase component	99.94
PLN03211	659	ABC transporter G-25; Provisional	99.94
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.94
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.94
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.94
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.94
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.94
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.94
PLN03073	718	ABC transporter F family; Provisional	99.94
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.94
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.94
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.94
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.93
COG0488	530	Uup ATPase components of ABC transporters with dup	99.93
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.93
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.93
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.93
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.93
COG4172	534	ABC-type uncharacterized transport system, duplica	99.93
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.93
COG4987	573	CydC ABC-type transport system involved in cytochr	99.93
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.93
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.93
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.93
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.93
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.93
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.92
PLN03073	718	ABC transporter F family; Provisional	99.92
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
PRK13409	590	putative ATPase RIL; Provisional	99.92
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.92
COG0488	530	Uup ATPase components of ABC transporters with dup	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.91
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.91
PLN03130	1622	ABC transporter C family member; Provisional	99.91
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.91
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.91
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.91
PTZ00243	1560	ABC transporter; Provisional	99.9
PLN03140	1470	ABC transporter G family member; Provisional	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.9
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.89
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.89
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.88
PLN03232	1495	ABC transporter C family member; Provisional	99.88
PLN03130	1622	ABC transporter C family member; Provisional	99.88
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.88
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.87
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.86
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.85
PTZ00243	1560	ABC transporter; Provisional	99.84
COG4178	604	ABC-type uncharacterized transport system, permeas	99.84
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.83
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.83
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.83
KOG0062	582	consensus ATPase component of ABC transporters wit	99.82
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.8
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.8
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.8
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.8
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.8
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.8
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.79
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.77
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.77
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.76
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.75
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.75
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.74
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.74
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.73
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.73
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.72
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.68
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.68
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.66
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.66
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.65
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.6
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.6
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.6
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.6
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.59
KOG0062	582	consensus ATPase component of ABC transporters wit	99.58
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.57
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.56
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.54
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.53
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.52
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.5
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.48
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.47
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.47
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.46
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.46
PTZ00301	210	uridine kinase; Provisional	99.45
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.45
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.45
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.44
PRK05439	311	pantothenate kinase; Provisional	99.42
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.41
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.41
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.39
PLN02796	347	D-glycerate 3-kinase	99.35
PRK05480	209	uridine/cytidine kinase; Provisional	99.34
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.32
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.28
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.25
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.24
PLN02318	656	phosphoribulokinase/uridine kinase	99.22
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.19
PLN03046	460	D-glycerate 3-kinase; Provisional	99.18
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.18
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.18
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.17
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.17
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.12
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.12
PLN02348	395	phosphoribulokinase	99.1
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.1
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.02
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.01
PRK07429	327	phosphoribulokinase; Provisional	99.01
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.0
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.97
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.95
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.94
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.91
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.89
COG4240	300	Predicted kinase [General function prediction only	98.88
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.85
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.85
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.85
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.8
PRK15453	290	phosphoribulokinase; Provisional	98.77
COG3910	233	Predicted ATPase [General function prediction only	98.7
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.69
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.68
PRK07667	193	uridine kinase; Provisional	98.67
cd01128	249	rho_factor Transcription termination factor rho is	98.63
smart00382	148	AAA ATPases associated with a variety of cellular	98.61
PRK06696	223	uridine kinase; Validated	98.55
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.55
PRK13695	174	putative NTPase; Provisional	98.55
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.49
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.49
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.49
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.48
PRK06067	234	flagellar accessory protein FlaH; Validated	98.47
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.44
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.44
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.41
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.4
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.4
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.38
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.32
TIGR00767	415	rho transcription termination factor Rho. Members	98.26
PRK10416	318	signal recognition particle-docking protein FtsY;	98.26
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.26
PRK09825	176	idnK D-gluconate kinase; Provisional	98.26
PRK09862	506	putative ATP-dependent protease; Provisional	98.25
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.23
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.23
PRK08233	182	hypothetical protein; Provisional	98.22
KOG2878	282	consensus Predicted kinase [General function predi	98.21
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.18
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.17
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.16
PRK00300	205	gmk guanylate kinase; Provisional	98.14
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.13
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.13
PHA02562	562	46 endonuclease subunit; Provisional	98.09
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.09
PRK08149	428	ATP synthase SpaL; Validated	98.09
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.08
PRK06547	172	hypothetical protein; Provisional	98.07
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.07
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.04
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.04
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.04
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.03
PRK09099	441	type III secretion system ATPase; Provisional	98.0
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.99

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-39  Score=268.34  Aligned_cols=169  Identities=18%  Similarity=0.242  Sum_probs=140.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||+|.|++.+    +|++||++|++||+++|+||||||||||||||++|..   |++|+ .++|...       
T Consensus         1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~   73 (240)
T COG1126           1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL   73 (240)
T ss_pred             CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence            4799999999999976    8899999999999999999999999999999999998   99999 4666321       


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                        +...|. +++ .|.++. ++++.+|....... .+.+.+...+...++|+.+++.  .+.|+.+|||||+|||+||||
T Consensus        74 ~~R~~vGm-VFQ-~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA  150 (240)
T COG1126          74 KLRRKVGM-VFQ-QFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA  150 (240)
T ss_pred             HHHHhcCe-ecc-cccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence              234565 333 344433 47888887665433 4566666777788899999887  567889999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+++++||||++|||+...++.+.+.+.
T Consensus       151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             HcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988653

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.1e-39  Score=271.89  Aligned_cols=170  Identities=16%  Similarity=0.221  Sum_probs=147.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCe
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~  151 (255)
                      .+++++++++.|+...    +|+|+||+|.+||+++|+||||||||||||+|+|+++   |++|+ .++|+..   .++.
T Consensus         2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            5789999999999844    8899999999999999999999999999999999998   99999 4666432   4566


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      +. ++++...++  .+++.+|..+.....+...........++++.+++.  .+.++.+|||||||||++||||+.+|++
T Consensus        75 ~~-vFQ~~~LlP--W~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l  151 (248)
T COG1116          75 GY-VFQEDALLP--WLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL  151 (248)
T ss_pred             EE-EeccCcccc--hhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence            66 666665443  379999998887777766655666889999999996  6789999999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~~~  255 (255)
                      |+|||||+.||+..+..+.+.+..+|
T Consensus       152 LLlDEPFgALDalTR~~lq~~l~~lw  177 (248)
T COG1116         152 LLLDEPFGALDALTREELQDELLRLW  177 (248)
T ss_pred             EEEcCCcchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999988776

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=4.7e-37  Score=247.74  Aligned_cols=169  Identities=17%  Similarity=0.107  Sum_probs=147.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC---------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---------  146 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~---------  146 (255)
                      ||+++||+|.|++..   .+|+||||+|++||++-|+||||||||||+|+|++..+   |++|+ .+++..         
T Consensus         1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            589999999998752   27899999999999999999999999999999999998   99999 455521         


Q ss_pred             --CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256          147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       147 --~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~  222 (255)
                        .+...|. |++|...+..  .++.+|..+.....|.+.......+.++|+.+++..  +..+++|||||+|||+||||
T Consensus        75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA  151 (223)
T COG2884          75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA  151 (223)
T ss_pred             chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence              1345676 7787766554  789999999999999877777788999999999874  55678999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|++||.||||..|||+...+++++|.+.
T Consensus       152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeei  183 (223)
T COG2884         152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI  183 (223)
T ss_pred             HccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999874

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.2e-36  Score=255.37  Aligned_cols=172  Identities=16%  Similarity=0.127  Sum_probs=140.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+   |++|. .+++...        
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~   77 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL   77 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence            46789999999765444668999999999999999999999999999999999998   99999 5666211        


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--C-CCCCCCCccccchhhhh
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-~~~~~lS~G~~qrv~~a  220 (255)
                          +...|. |+++...++.  +++.||........+............+++.+++..  . .++.+|||||+|||++|
T Consensus        78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence                234566 6666555443  899999887665655543334456678888888862  3 55779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+.+|++|+.||||..||..+.++++++|.+.
T Consensus       155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~  188 (226)
T COG1136         155 RALINNPKIILADEPTGNLDSKTAKEVLELLREL  188 (226)
T ss_pred             HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-37  Score=257.51  Aligned_cols=168  Identities=16%  Similarity=0.158  Sum_probs=146.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||+|.|++..    +++++||+|++||+++++|||||||||+||||.+++.   |++|+ .+++...        
T Consensus         1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            589999999999765    7899999999999999999999999999999999998   99999 4666432        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhh
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                      +...|+++.+-|.+.+   +++.+|+.......+...+.......++++.+++.    .+.++.+|||||+|||.+||||
T Consensus        74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL  150 (309)
T COG1125          74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL  150 (309)
T ss_pred             HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence            4567887777776433   79999999888888876666667789999999986    4688899999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++|++||||++|||.+|+++.+.+.+.
T Consensus       151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l  181 (309)
T COG1125         151 AADPPILLMDEPFGALDPITRKQLQEEIKEL  181 (309)
T ss_pred             hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence            9999999999999999999999999887653

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-36  Score=252.59  Aligned_cols=175  Identities=15%  Similarity=0.133  Sum_probs=141.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      |++++++|+++.|+.......++++|||++.+||++||+|+||||||||+++|+|+.+   |++|+ .++|+...     
T Consensus         1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~   77 (252)
T COG1124           1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA   77 (252)
T ss_pred             CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence            4689999999999876544457899999999999999999999999999999999998   99999 57774322     


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         .....+|++|.+.-.++..++.+.+.+.....|+..  ......++++.+++.   .+.++.+|||||+||++||||
T Consensus        78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA  155 (252)
T COG1124          78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA  155 (252)
T ss_pred             hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence               233456888877655544555544444443333322  223378999999998   578889999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||+.||...+.+++++|.+.
T Consensus       156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l  187 (252)
T COG1124         156 LIPEPKLLILDEPTSALDVSVQAQILNLLLEL  187 (252)
T ss_pred             hccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.7e-36  Score=263.40  Aligned_cols=170  Identities=17%  Similarity=0.183  Sum_probs=144.8

Q ss_pred             cceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      +.+++++||+|.|+ ...    +|++|||+|++|+++||+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus         2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence            45789999999999 555    8899999999999999999999999999999999998   99999 4555221     


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l  223 (255)
                        +...|. +..+...  .+.+++.++..+....++.+...+...+.++++.+++..  +..+..||+|||||+.+|.||
T Consensus        75 ~~~~~igy-~~~~~~~--~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL  151 (293)
T COG1131          75 KVRRRIGY-VPQEPSL--YPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL  151 (293)
T ss_pred             HHHhheEE-EccCCCC--CccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence              234566 5555442  334899999999888888755455678899999999986  677899999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|+++||||||+|||+..+.+++++|...
T Consensus       152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l  182 (293)
T COG1131         152 LHDPELLILDEPTSGLDPESRREIWELLREL  182 (293)
T ss_pred             hcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.2e-36  Score=253.86  Aligned_cols=172  Identities=15%  Similarity=0.163  Sum_probs=133.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----C
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~  148 (255)
                      +++|+++|+++.|++..    +|+||||++++|++++|+||||||||||+|.|.|+++   |++|+ .+.+...     .
T Consensus         2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~   74 (254)
T COG1121           2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR   74 (254)
T ss_pred             CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence            67899999999999643    7899999999999999999999999999999999998   99999 3444321     1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                      ...|+ +++.-.....--+++.+.....+ ...++   +...+...+.++|+.+++.  .+..+.+|||||+|||.+|||
T Consensus        75 ~~IgY-VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARA  153 (254)
T COG1121          75 LRIGY-VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARA  153 (254)
T ss_pred             CeEEE-cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHH
Confidence            23554 66633111111134443322211 11222   2334567889999999987  678889999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++|+|||||+++|+.++.++.++|++.
T Consensus       154 L~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l  185 (254)
T COG1121         154 LAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL  185 (254)
T ss_pred             hccCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.3e-36  Score=257.90  Aligned_cols=172  Identities=16%  Similarity=0.144  Sum_probs=146.6

Q ss_pred             eEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ||++++|+|.|... ...+.+++||||+|++|+++||+|.||||||||+|++.++.+   |++|+ .++|+..       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            58999999999873 234668999999999999999999999999999999999998   99999 5666321       


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                          +...|. |++.-..+.  ..++.+|..+..+..+.+.+....++.++++.+++.  .+.++.+|||||||||+|||
T Consensus        78 Lr~~R~~IGM-IFQhFnLLs--srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR  154 (339)
T COG1135          78 LRQLRQKIGM-IFQHFNLLS--SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR  154 (339)
T ss_pred             HHHHHhhccE-Eeccccccc--cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence                345565 555433222  268999999999999988777778889999999997  46788899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+|+||+.||+|+.|||...+.+.+++..+
T Consensus       155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I  187 (339)
T COG1135         155 ALANNPKILLCDEATSALDPETTQSILELLKDI  187 (339)
T ss_pred             HHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999998754

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.4e-36  Score=265.65  Aligned_cols=169  Identities=18%  Similarity=0.193  Sum_probs=146.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~  149 (255)
                      |.+|+++||+|.|++..    +++++||+|++||+++|+||||||||||||+|+|+..   |++|+ .+++...    +.
T Consensus         1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            67899999999999854    6799999999999999999999999999999999998   99999 5777432    22


Q ss_pred             --CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       150 --~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                        +.+. |++ +|-++ +++++.+|+.+..+..+.+.+.....+.++.+.|++.  .+.++.+|||||+|||++||||+.
T Consensus        74 ~R~iam-VFQ-~yALy-PhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr  150 (338)
T COG3839          74 KRGIAM-VFQ-NYALY-PHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR  150 (338)
T ss_pred             HCCEEE-EeC-Ccccc-CCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence              3333 444 44444 3589999999999999988888888899999999987  678889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+++++|||++.||...+..++..|.+
T Consensus       151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~  178 (338)
T COG3839         151 KPKVFLLDEPLSNLDAKLRVLMRSEIKK  178 (338)
T ss_pred             CCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence            9999999999999999999888887755

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2.1e-35  Score=246.38  Aligned_cols=170  Identities=18%  Similarity=0.218  Sum_probs=141.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      .++|++++|++.|++..    +++++||+|++||+++|+||||||||||||+|.|+++   |++|+ .++|...      
T Consensus         6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            46899999999999865    7799999999999999999999999999999999998   99999 4555321      


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                           +...|. +++.|-...  .+++.||..+..+... +++....+.+..-++.+++.   .+.++.+|||||++|++
T Consensus        79 ~~~~ir~r~Gv-lFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva  155 (263)
T COG1127          79 ELYEIRKRMGV-LFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA  155 (263)
T ss_pred             HHHHHHhheeE-Eeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence                 234676 677775433  3899999988665544 56655556667778888886   45788899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|||++.+|++|++||||+||||.....+-++|.+.
T Consensus       156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L  191 (263)
T COG1127         156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIREL  191 (263)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999888888653

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.1e-35  Score=245.69  Aligned_cols=169  Identities=18%  Similarity=0.192  Sum_probs=138.2

Q ss_pred             ceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC------
Q 025256           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~------  147 (255)
                      .+|+++||++.| ++..    +|++|||+|++||+|+|+||||||||||||+|+|+..   |++|++ +++...      
T Consensus         2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k   74 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK   74 (258)
T ss_pred             ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence            579999999999 4433    8899999999999999999999999999999999998   999994 554211      


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHH--------HHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCcc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHG  212 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G  212 (255)
                           +.+.|. |+++...+.+  +++.+|...        ++..++++...+.....+.|+.+++..  ..+...||||
T Consensus        75 ~lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG  151 (258)
T COG3638          75 ELRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG  151 (258)
T ss_pred             HHHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence                 345676 6665554443  566555433        344567666667777889999999874  4567799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+|||+|||+|+.+|++|+.|||++.|||.+.+.++++|...
T Consensus       152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i  193 (258)
T COG3638         152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI  193 (258)
T ss_pred             hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-35  Score=261.85  Aligned_cols=169  Identities=15%  Similarity=0.182  Sum_probs=140.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ++.++++||+|.|++..    +++|+||+|++||+++|+||||||||||||+|+|+.+   |++|+ .++|...      
T Consensus         3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            46899999999999765    8899999999999999999999999999999999998   99999 4666432      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      +...|. |+++. -++ +++++.+|+.+..+.... ..+.....+.+.++.+++.  .+.++.+|||||+|||++||||+
T Consensus        76 kR~ig~-VFQ~Y-ALF-PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~  152 (352)
T COG3842          76 KRPIGM-VFQSY-ALF-PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV  152 (352)
T ss_pred             hcccce-eecCc-ccC-CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence            234554 55544 333 359999999998874443 3333456788999998887  57788899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++|+||||++.||...+++++.-+.+
T Consensus       153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~  181 (352)
T COG3842         153 PEPKVLLLDEPLSALDAKLREQMRKELKE  181 (352)
T ss_pred             cCcchhhhcCcccchhHHHHHHHHHHHHH
Confidence            99999999999999999998888877654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-35  Score=239.73  Aligned_cols=168  Identities=17%  Similarity=0.171  Sum_probs=141.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------KP  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-------~~  148 (255)
                      |+++.+++|+|+...   .+++||||++++|+++||+|||||||||+||+|++++.   |++|. .+++-.       ++
T Consensus         1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            589999999999743   37899999999999999999999999999999999998   99999 455521       13


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...|.. . +..-++ ..+++.||+.++...+++..........++.+.+++.  .+.++..||.||||||++||||+++
T Consensus        75 r~IGVl-~-~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          75 RKIGVL-F-GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             hhccee-c-CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            445653 3 332222 3489999999999999886655566778888888876  5778899999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+|||++|||.-.++.+.+++.+
T Consensus       152 P~i~vlDEP~sGLDi~~~r~~~dfi~q  178 (245)
T COG4555         152 PSILVLDEPTSGLDIRTRRKFHDFIKQ  178 (245)
T ss_pred             CCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence            999999999999999999999998865

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.9e-34  Score=246.60  Aligned_cols=168  Identities=17%  Similarity=0.167  Sum_probs=132.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++||++.|++..    +++|+||++++|++++|+||||||||||||+|+|+++   |.+|+ .++|+...       
T Consensus         2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            689999999999754    7799999999999999999999999999999999998   99999 46664321       


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                       ...+. +++.....  ..+++.+.....+.- .+.   +...|...+...++.+++.  ....+.+||||||||+.+|+
T Consensus        75 Ak~ia~-vpQ~~~~~--~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr  151 (258)
T COG1120          75 AKKLAY-VPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR  151 (258)
T ss_pred             hhhEEE-eccCCCCC--CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence             13343 66654322  236776655444322 222   2233444677888888876  56778999999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+|++|++||||+.||..++.++++++.+.
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l  184 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDL  184 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=8.7e-34  Score=251.64  Aligned_cols=168  Identities=16%  Similarity=0.116  Sum_probs=135.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++++++||+|.|++..    +|+++||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         6 ~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~   78 (306)
T PRK13537          6 APIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA   78 (306)
T ss_pred             ceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence            5799999999998644    7899999999999999999999999999999999998   99999 4555321       


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      +...|. ++++....  ..+++.++..+....++...........++++.+++.  .+..+..||+||+||+++|+||+.
T Consensus        79 ~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~  155 (306)
T PRK13537         79 RQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN  155 (306)
T ss_pred             HhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence            123455 55554322  2378888877655555543222234556788888776  366778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+.+++++++++.+
T Consensus       156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~  183 (306)
T PRK13537        156 DPDVLVLDEPTTGLDPQARHLMWERLRS  183 (306)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999876

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.3e-33  Score=253.64  Aligned_cols=170  Identities=15%  Similarity=0.107  Sum_probs=134.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      +++|+++||+|.|++..    +|+++||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus        39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~  111 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL  111 (340)
T ss_pred             ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence            56899999999998754    7899999999999999999999999999999999998   99999 4565321      


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++....  ..+++.++..+....++...........++++.+++.  .+.++..||+||+||+++|++|+
T Consensus       112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~  188 (340)
T PRK13536        112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI  188 (340)
T ss_pred             HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence             223454 55543322  2367777776654444432222233456778888876  56778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+.++++++++|.+.
T Consensus       189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l  218 (340)
T PRK13536        189 NDPQLLILDEPTTGLDPHARHLIWERLRSL  218 (340)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999763

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.7e-33  Score=239.72  Aligned_cols=171  Identities=14%  Similarity=0.097  Sum_probs=143.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC--------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~--------  146 (255)
                      ++++++++++.|++.   ..+++++||+|++|++++|+|+||||||||+++|+|++.   |++|. .+++..        
T Consensus         2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            578999999999875   227899999999999999999999999999999999998   99999 455532        


Q ss_pred             -CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       147 -~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                       .+...|. +.++...... .-++.+++.+...+.+++.+.....+.++++.+++.  .+..+..|||||||||++|.+|
T Consensus        76 ~~~~~vG~-VfQnpd~q~~-~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122          76 ELRQKVGL-VFQNPDDQLF-GPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             HhhcceEE-EEECcccccc-cCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence             1355676 5666533322 147778888888888887665667788999998886  5677789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+..++++.+++.+.
T Consensus       154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L  184 (235)
T COG1122         154 AMGPEILLLDEPTAGLDPKGRRELLELLKKL  184 (235)
T ss_pred             HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-33  Score=254.44  Aligned_cols=169  Identities=17%  Similarity=0.144  Sum_probs=135.6

Q ss_pred             cceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      |++++++||++.| ++..    +|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++...     
T Consensus         1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~   73 (356)
T PRK11650          1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP   73 (356)
T ss_pred             CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            4579999999999 5533    7799999999999999999999999999999999998   99999 4666422     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++.. ++ +.+++.+|..+.....+.........+.++++.+++.  .+.++.+|||||+|||++||||+
T Consensus        74 ~~r~ig~-v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~  150 (356)
T PRK11650         74 ADRDIAM-VFQNYA-LY-PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV  150 (356)
T ss_pred             HHCCEEE-EeCCcc-cc-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence             123454 566543 22 3478888887765444433222334567888888886  46778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+..++++++.|.+
T Consensus       151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~  179 (356)
T PRK11650        151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR  179 (356)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.2e-33  Score=251.96  Aligned_cols=172  Identities=17%  Similarity=0.147  Sum_probs=134.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||+|.|+.......+|+|+||+|++|+++||+||||||||||+|+|+|+++   |++|+ .+++...        
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            48999999999632112237899999999999999999999999999999999998   99999 4665321        


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         +...|. ++++....  ...++.++..+.....+.+.......+.++++.+++.  .+.++.+||+||+||+++|||
T Consensus        78 ~~~r~~Ig~-v~Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA  154 (343)
T TIGR02314        78 TKARRQIGM-IFQHFNLL--SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHhcCEEE-EECCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               123454 56554322  2257778776655444443333344567888988886  467788999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.+++.++++|.+.
T Consensus       155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l  186 (343)
T TIGR02314       155 LASNPKVLLCDEATSALDPATTQSILELLKEI  186 (343)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-33  Score=251.93  Aligned_cols=170  Identities=17%  Similarity=0.186  Sum_probs=137.5

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      +|++|+++||++.|++..    +++++||++++|++++|+|||||||||||++|+|+++   |++|+ .+++...     
T Consensus         3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   75 (351)
T PRK11432          3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI   75 (351)
T ss_pred             CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            467899999999998643    6799999999999999999999999999999999998   99999 4666422     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++.  .+.++..|||||+|||++||+|+
T Consensus        76 ~~r~ig~-vfQ~~~-lf-p~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~  152 (351)
T PRK11432         76 QQRDICM-VFQSYA-LF-PHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI  152 (351)
T ss_pred             HHCCEEE-EeCCcc-cC-CCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             123444 555543 22 3378888887765444443333345677888888886  46778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+|||+++||+..++++++.|.+
T Consensus       153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  181 (351)
T PRK11432        153 LKPKVLLFDEPLSNLDANLRRSMREKIRE  181 (351)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=3.2e-33  Score=236.05  Aligned_cols=169  Identities=17%  Similarity=0.160  Sum_probs=128.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      |++++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   75 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI   75 (216)
T ss_pred             CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence            47899999999642112  6799999999999999999999999999999999997   99999 4665321        


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         +...+. ++++.....  .+++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        76 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  152 (216)
T TIGR00960        76 PFLRRHIGM-VFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA  152 (216)
T ss_pred             HHHHHhceE-EecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               112343 555543222  256667665543333332222234567788888875  355677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+..++.+.+++.+
T Consensus       153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (216)
T TIGR00960       153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE  183 (216)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.6e-33  Score=251.85  Aligned_cols=170  Identities=15%  Similarity=0.149  Sum_probs=138.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++|+++||++.|++..    +|+++||++++|++++|+|||||||||||++|+|+++   |++|+ .+++...      
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            56899999999998744    6799999999999999999999999999999999998   99999 5666432      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++.  .+.++..|||||+|||++||+|+.
T Consensus        75 ~r~ig~-v~Q~~~-lf-p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~  151 (353)
T TIGR03265        75 KRDYGI-VFQSYA-LF-PNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT  151 (353)
T ss_pred             HCCEEE-EeCCcc-cC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            123444 555533 23 2478888888765544443333345678889998886  467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+++|+|||+++||+..++++++.|.+.
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l  180 (353)
T TIGR03265       152 SPGLLLLDEPLSALDARVREHLRTEIRQL  180 (353)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.8e-33  Score=228.40  Aligned_cols=169  Identities=16%  Similarity=0.153  Sum_probs=127.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-----cc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-----G~-~~~~~~~-  147 (255)
                      ++.++++||++.|++.+    +|++||++|++++++||+||||||||||||++..+..   ...     |+ .++|+.. 
T Consensus         5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~   77 (253)
T COG1117           5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY   77 (253)
T ss_pred             cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence            46799999999999877    8899999999999999999999999999999999875   333     44 2333211 


Q ss_pred             ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHh------hcCCCCCCCCCCCcc
Q 025256          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRNQGSVYAPSFDHG  212 (255)
Q Consensus       148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~------l~l~~~~~~~~lS~G  212 (255)
                               +...|. +++.....+   ++..+|..+..+..|+....-.+.+.+.|+.      +.-..+...-.||||
T Consensus        78 ~~~~d~~~lRr~vGM-VFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG  153 (253)
T COG1117          78 DPKVDVVELRRRVGM-VFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG  153 (253)
T ss_pred             CCCCCHHHHHHHhee-eccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh
Confidence                     234454 444443323   5677777777777776432222223333332      222345566689999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||++|||+|+.+|+||++||||++|||.+..++-+++.+.
T Consensus       154 QQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL  195 (253)
T COG1117         154 QQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL  195 (253)
T ss_pred             HHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-33  Score=241.11  Aligned_cols=168  Identities=17%  Similarity=0.230  Sum_probs=139.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC---CC-----
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ---VK-----  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~---~~-----  147 (255)
                      +|++++++|.|+...    +++||+++|+.||.++|.||||||||||||+|+|++.   |+.|. .++++   ..     
T Consensus         2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            588999999999977    8899999999999999999999999999999999998   99999 46664   11     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CC-CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                       ....|. ++++.- ++ .++++.+|+.+...... .+ .......+.++|+.+.+.  .+.|+.+|||||+|||++|||
T Consensus        75 ~~R~VGf-vFQ~YA-LF-~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA  151 (345)
T COG1118          75 RDRKVGF-VFQHYA-LF-PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA  151 (345)
T ss_pred             hhcceeE-EEechh-hc-ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence             234565 555443 33 35899999988775543 23 333455677888888886  578999999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++|+|||||..||...++++...+.+.
T Consensus       152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~  183 (345)
T COG1118         152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRKL  183 (345)
T ss_pred             hhcCCCeEeecCCchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887654

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=7e-33  Score=245.64  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=129.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      +++++||++.|++..    +|+++||+|++|+++||+||||||||||+++|+|++.   |++|+ .+++...       +
T Consensus         4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   76 (303)
T TIGR01288         4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR   76 (303)
T ss_pred             EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence            689999999998644    7799999999999999999999999999999999997   99999 4555321       1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...|. ++++....  ..+++.++........+.........+.++++.+++..  +.++..||+||+||+++|++++.+
T Consensus        77 ~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  153 (303)
T TIGR01288        77 VAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND  153 (303)
T ss_pred             hcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            23444 55553322  23677776654333333322112234567788887763  667789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+..++.+++++.+
T Consensus       154 p~lllLDEPt~gLD~~~~~~l~~~l~~  180 (303)
T TIGR01288       154 PQLLILDEPTTGLDPHARHLIWERLRS  180 (303)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.9e-33  Score=251.57  Aligned_cols=169  Identities=15%  Similarity=0.112  Sum_probs=133.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++++++|+++.|++..    +++++||++++|++++|+|||||||||||++|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~   73 (369)
T PRK11000          1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA   73 (369)
T ss_pred             CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence            45799999999998643    7799999999999999999999999999999999998   99999 4655321      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....+. ++++... + ..+++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|++|+.
T Consensus        74 ~~~i~~-v~Q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~  150 (369)
T PRK11000         74 ERGVGM-VFQSYAL-Y-PHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (369)
T ss_pred             HCCEEE-EeCCccc-C-CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            122444 5655432 2 2367888776654433432222234567888888886  456778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++||+||||++||+..++++.++|.+
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~  178 (369)
T PRK11000        151 EPSVFLLDEPLSNLDAALRVQMRIEISR  178 (369)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988865

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-33  Score=225.94  Aligned_cols=173  Identities=13%  Similarity=0.204  Sum_probs=149.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~  150 (255)
                      |+++.+++++..|++..  ..+++|+|++|.+||++.++|||||||||||++++|+..   |+.|+ .+++...   -.+
T Consensus         1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            56788999999999854  447799999999999999999999999999999999998   99999 3665432   235


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .|. ++++.-.++.  +++.+|..+..+..|+......+...+.+..+++.  .+.++-+|||||+||+.+||||+.+|+
T Consensus        76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~  152 (259)
T COG4525          76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ  152 (259)
T ss_pred             cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence            676 6666654443  78999999999999998777777888899998886  467788999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~~~  255 (255)
                      +|++|||+..||.-.++.+.+++-..|
T Consensus       153 ~LlLDEPfgAlDa~tRe~mQelLldlw  179 (259)
T COG4525         153 LLLLDEPFGALDALTREQMQELLLDLW  179 (259)
T ss_pred             eEeecCchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998776

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=6.1e-33  Score=234.61  Aligned_cols=170  Identities=18%  Similarity=0.199  Sum_probs=126.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      ++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   77 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA   77 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence            4688999999752100127799999999999999999999999999999999997   99999 46553211        


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...+. +.++....  ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++|++
T Consensus        78 ~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (218)
T cd03255          78 AFRRRHIGF-VFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA  154 (218)
T ss_pred             HHHhhcEEE-EeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence                12333 44443322  22566666655333233221112345677888888763  56677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+.+++.+.+++.+
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (218)
T cd03255         155 LANDPKIILADEPTGNLDSETGKEVMELLRE  185 (218)
T ss_pred             HccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=8.3e-33  Score=234.27  Aligned_cols=166  Identities=16%  Similarity=0.152  Sum_probs=128.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~  149 (255)
                      |+++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       .
T Consensus         1 i~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGDFE----AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECCEE----eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            46899999998643    6799999999999999999999999999999999997   99999 45553211       1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++....  ..+++.++..+.....+.........+.++++.+++..  +.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p  150 (220)
T cd03265          74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP  150 (220)
T ss_pred             cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            2333 45544322  23566666655433334322222345678888888763  5677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+.+++.+.++|.+
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~  176 (220)
T cd03265         151 EVLFLDEPTIGLDPQTRAHVWEYIEK  176 (220)
T ss_pred             CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998865

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=6.4e-33  Score=233.76  Aligned_cols=166  Identities=17%  Similarity=0.236  Sum_probs=125.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGSVR----ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCCee----eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            46889999997643    6799999999999999999999999999999999997   99999 4555321      112


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. ++++....  ..+++.++........+.........+.++++.+++..  +..+..||+||+||+++|++|+.+|+
T Consensus        74 i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~  150 (213)
T cd03259          74 IGM-VFQDYALF--PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS  150 (213)
T ss_pred             EEE-EcCchhhc--cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            333 44443221  12566666554332222221122234567788887763  55667999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+.+++.+.++|.+
T Consensus       151 ~lllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03259         151 LLLLDEPLSALDAKLREELREELKE  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1e-32  Score=250.37  Aligned_cols=171  Identities=19%  Similarity=0.210  Sum_probs=136.7

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      ++++|+++|+++.|++..    +++++||++++|++++|+|||||||||||++|+|+++   |++|+ .+++...     
T Consensus        11 ~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   83 (375)
T PRK09452         11 LSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVPA   83 (375)
T ss_pred             CCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            467899999999998644    6799999999999999999999999999999999998   99999 4666432     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++.. ++ +++++.+|+.+.....+.+.......+.++++.+++.  .+.++..|||||+|||++||+|+
T Consensus        84 ~~r~ig~-vfQ~~~-lf-p~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~  160 (375)
T PRK09452         84 ENRHVNT-VFQSYA-LF-PHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVV  160 (375)
T ss_pred             HHCCEEE-EecCcc-cC-CCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHh
Confidence             123444 555543 22 2478888887755444433222234567788888886  46778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+|||+++||+..++.+++.|.+.
T Consensus       161 ~~P~llLLDEP~s~LD~~~r~~l~~~L~~l  190 (375)
T PRK09452        161 NKPKVLLLDESLSALDYKLRKQMQNELKAL  190 (375)
T ss_pred             cCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988653

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-32  Score=234.15  Aligned_cols=172  Identities=13%  Similarity=0.069  Sum_probs=129.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++||++.|++......+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            479999999999752111226799999999999999999999999999999999997   99999 46653211      


Q ss_pred             ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhh
Q 025256          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a  220 (255)
                            ...+. ++++... + ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++|
T Consensus        81 ~~~~~~~~i~~-v~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629         81 KAELRNQKLGF-IYQFHHL-L-PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HHHHHhccEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence                  12343 5555432 2 22567776655332223222122345677888888763  456679999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.98  E-value=1.3e-32  Score=232.01  Aligned_cols=167  Identities=14%  Similarity=0.158  Sum_probs=126.8

Q ss_pred             eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      |++++|+++.|+ +..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         1 ~l~~~~l~~~~~~~~~----il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (214)
T TIGR02673         1 MIEFHNVSKAYPGGVA----ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ   73 (214)
T ss_pred             CEEEEeeeEEeCCCce----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence            478999999994 432    6799999999999999999999999999999999997   99999 45553211      


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~  221 (255)
                           ...+. +.++....  ..+++.++........+.........+.++++.+++..  +..+..||+||+||+++|+
T Consensus        74 ~~~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (214)
T TIGR02673        74 LPLLRRRIGV-VFQDFRLL--PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR  150 (214)
T ss_pred             HHHHHhheEE-EecChhhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                 12333 45443321  12566666655433333222122345677888888753  4566799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|+++|+||||++||+.++..+.++|.+
T Consensus       151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.98  E-value=1.1e-32  Score=233.54  Aligned_cols=170  Identities=18%  Similarity=0.232  Sum_probs=127.8

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeE
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT  153 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~  153 (255)
                      ++++|+++.|++......+++++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++...   ....+.
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~   77 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY   77 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence            4688999999762111127799999999999999999999999999999999997   99999 4555321   223444


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                       +.++....  ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++|++++.+|+++|
T Consensus        78 -v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll  154 (220)
T cd03293          78 -VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL  154 (220)
T ss_pred             -Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence             55443321  22566666654433333322222345677888888753  56677999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.+++.+.++|.+
T Consensus       155 LDEPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293         155 LDEPFSALDALTREQLQEELLD  176 (220)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.98  E-value=8.3e-34  Score=230.68  Aligned_cols=170  Identities=19%  Similarity=0.234  Sum_probs=134.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.++.++|+.|+|+...    ++++|||++++||+|||+|||||||||.+.++.|+.+   |++|+ .+++...      
T Consensus         2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~   74 (243)
T COG1137           2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH   74 (243)
T ss_pred             CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence            56899999999999865    7799999999999999999999999999999999998   99999 4665332      


Q ss_pred             -CCCeeE-EEecCCCCCcCccCCcccChHHHHHhcCCCC--CCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          148 -PPDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 -~~~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                       +...|. ++++..- ++ .++++.+|+....+......  ......+.++++.+.+.  .+.+...||||+|+|+.+||
T Consensus        75 ~RArlGigYLpQE~S-IF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIAR  152 (243)
T COG1137          75 KRARLGIGYLPQEAS-IF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIAR  152 (243)
T ss_pred             HHhhcCcccccccch-Hh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHH
Confidence             122232 1333322 22 34788888777665544221  23334567888888886  56677799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+.+|++++|||||+|.||.+..++..++..
T Consensus       153 aLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~  184 (243)
T COG1137         153 ALAANPKFILLDEPFAGVDPIAVIDIQRIIKH  184 (243)
T ss_pred             HHhcCCCEEEecCCccCCCchhHHHHHHHHHH
Confidence            99999999999999999999999999888765

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=99.98  E-value=1.7e-32  Score=230.72  Aligned_cols=166  Identities=17%  Similarity=0.194  Sum_probs=127.8

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCee
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA  152 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~g  152 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...    ....+
T Consensus         1 l~~~~l~~~~~~~~----~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGRVT----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG   73 (210)
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence            46889999997633    6799999999999999999999999999999999997   99999 4665432    12233


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                      . +.++....  ..+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+++
T Consensus        74 ~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l  150 (210)
T cd03269          74 Y-LPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL  150 (210)
T ss_pred             E-eccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3 45544322  2256777665543333332222234567788888775  34567799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+..++.+.+++.+
T Consensus       151 llDEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269         151 ILDEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.98  E-value=1.6e-32  Score=234.80  Aligned_cols=166  Identities=17%  Similarity=0.230  Sum_probs=125.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            46889999997643    6799999999999999999999999999999999997   99999 4555321         


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~  222 (255)
                        +...+. +.++... + ..+++.++..+..... +.........+.++++.+++..  +..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-v~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          74 RLRRRMGM-LFQSGAL-F-DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             HHhcceEE-EccCccc-C-CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              112333 4544332 2 2356666665432211 1211112334567788888753  56677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  181 (235)
T cd03261         151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS  181 (235)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.98  E-value=2.3e-32  Score=242.06  Aligned_cols=168  Identities=15%  Similarity=0.146  Sum_probs=133.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      +++++|++|.|++..    +++++||++++|+++||+||||||||||+++|+|++.   |++|+ .+++...       .
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            489999999998644    7899999999999999999999999999999999998   99999 4665322       1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...|. ++++..  ....+++.++..+....++.+.........++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        75 ~~ig~-~~q~~~--l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        75 RNIGY-LPEHNP--LYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             hceEE-ecCCCC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            22444 444433  222367777777655555543332344567888888886  3667789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+||||++||+.+++.+++++.+.
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~~  179 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKNI  179 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.4e-32  Score=245.90  Aligned_cols=172  Identities=16%  Similarity=0.169  Sum_probs=131.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||++.|+.......+++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++...        
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~   77 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL   77 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence            48899999999721111227799999999999999999999999999999999998   99999 4665321        


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         +...+. ++++... + ..+++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|++
T Consensus        78 ~~~~~~ig~-v~q~~~l-~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  154 (343)
T PRK11153         78 RKARRQIGM-IFQHFNL-L-SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHhcCEEE-EeCCCcc-C-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               123444 5554432 2 2367777776654444433222234567788888876  356677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l  186 (343)
T PRK11153        155 LASNPKVLLCDEATSALDPATTRSILELLKDI  186 (343)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.4e-32  Score=236.58  Aligned_cols=168  Identities=13%  Similarity=0.140  Sum_probs=128.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCee
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g  152 (255)
                      |++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....+
T Consensus         1 ml~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGGKP----ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCCee----eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence            478999999997643    6799999999999999999999999999999999997   99999 4655322   12234


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                      . +.++....  ..+++.++........+.........+.++++.+++..  +..+..||+||+||+++|++++.+|++|
T Consensus        74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll  150 (255)
T PRK11248         74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL  150 (255)
T ss_pred             E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 55543322  22566666554332233322222345678888888763  5567799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHhh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||||++||+.+++.+.++|.+.
T Consensus       151 lLDEPt~~LD~~~~~~l~~~L~~~  174 (255)
T PRK11248        151 LLDEPFGALDAFTREQMQTLLLKL  174 (255)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999998753

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.98  E-value=2.1e-32  Score=231.30  Aligned_cols=171  Identities=16%  Similarity=0.144  Sum_probs=130.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      +++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...       .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence            47899999999864111126799999999999999999999999999999999997   99999 4555321       1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. +.++... + ..+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        78 ~~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (218)
T cd03266          78 RRLGF-VSDSTGL-Y-DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD  154 (218)
T ss_pred             hhEEE-ecCCccc-C-cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence            12333 4544422 2 2356777665544333332222234567788888876  3567779999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+..++.+.++|.+
T Consensus       155 p~illlDEPt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         155 PPVLLLDEPTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.98  E-value=4.8e-32  Score=230.70  Aligned_cols=173  Identities=17%  Similarity=0.085  Sum_probs=128.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      .++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....     
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence            3579999999999752111126799999999999999999999999999999999997   99999 45553211     


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhh
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~  219 (255)
                             ...+. +.++... + ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++
T Consensus        81 ~~~~~~~~~i~~-~~q~~~l-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l  157 (228)
T PRK10584         81 ARAKLRAKHVGF-VFQSFML-I-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL  157 (228)
T ss_pred             HHHHHHhheEEE-EEccccc-C-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence                   12333 4544322 2 22466666554322222222222345677888888753  55677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  191 (228)
T PRK10584        158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS  191 (228)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.98  E-value=2.4e-32  Score=247.05  Aligned_cols=167  Identities=13%  Similarity=0.173  Sum_probs=135.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC--cc-ccCCCCC------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~--G~-~~~~~~~------  147 (255)
                      .++++||+|.|++..    +|+++||++++|++++|+|||||||||||++|+|++.   |++  |+ .+++...      
T Consensus         5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            478999999998643    7899999999999999999999999999999999998   999  99 4665322      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ ..+++.+|+.+.....+.+.......+.++++.+++.  .+.++..||+||+|||++||||+.
T Consensus        78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~  154 (362)
T TIGR03258        78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI  154 (362)
T ss_pred             HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            123454 555543 22 3478888887765544444333344577888888886  467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++||||||+++||+..++++++.|.+
T Consensus       155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       155 EPDVLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998875

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.98  E-value=2.6e-32  Score=231.11  Aligned_cols=168  Identities=18%  Similarity=0.150  Sum_probs=127.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++||++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 l~~~~l~~~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGT--KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCC--ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence            46889999997521  117799999999999999999999999999999999997   99999 4555322       11


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++....  ...++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        76 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  152 (220)
T cd03263          76 SLGY-CPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP  152 (220)
T ss_pred             hEEE-ecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence            2343 45443322  1256666665544333332222234566788888775  35667899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+||||++||+..++.+.+++.+
T Consensus       153 ~llllDEP~~~LD~~~~~~l~~~l~~  178 (220)
T cd03263         153 SVLLLDEPTSGLDPASRRAIWDLILE  178 (220)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.98  E-value=3.8e-32  Score=230.24  Aligned_cols=171  Identities=16%  Similarity=0.092  Sum_probs=126.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            37899999999742111226799999999999999999999999999999999997   99999 45553210       


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                           ...+. ++++....  ..+++.++..................+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        78 ~~~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        78 AKLRNKKLGF-IYQFHHLL--PDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HHHHHhcEEE-EecccccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                 12333 55554322  1256666665432222221111233456788888775  35667799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  186 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE  186 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=99.98  E-value=2.9e-32  Score=229.65  Aligned_cols=166  Identities=15%  Similarity=0.133  Sum_probs=125.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      ++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            46889999998743    6799999999999999999999999999999999997   99999 4555321      112


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +.++... + ...++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  150 (213)
T cd03301          74 IAM-VFQNYAL-Y-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK  150 (213)
T ss_pred             EEE-EecChhh-c-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            333 4444332 2 2256666665433222322211223456778887775  456778999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+..++.+.++|.+
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03301         151 VFLMDEPLSNLDAKLRVQMRAELKR  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.98  E-value=3.4e-32  Score=232.36  Aligned_cols=171  Identities=18%  Similarity=0.182  Sum_probs=128.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL   77 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            47899999999763100126799999999999999999999999999999999998   99999 46653211       


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...+. ++++... + ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++|++
T Consensus        78 ~~~~~~i~~-~~q~~~~-~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (233)
T cd03258          78 RKARRRIGM-IFQHFNL-L-SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA  154 (233)
T ss_pred             HHHHhheEE-EccCccc-C-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence                12333 4444332 2 22566666654433333221112345677888888763  56677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (233)
T cd03258         155 LANNPKVLLCDEATSALDPETTQSILALLRD  185 (233)
T ss_pred             HhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.4e-32  Score=246.54  Aligned_cols=170  Identities=15%  Similarity=0.134  Sum_probs=135.6

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      ++++|+++|+++.|++..    +++++||++++|++++|+|||||||||||++|+|++.   |++|+ .+++...     
T Consensus        16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            356899999999998643    7799999999999999999999999999999999998   99999 4666432     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++.. ++ +++++.+|..+.....+.........+.++++.+++.  .+.++..||+||+|||++||+|+
T Consensus        89 ~~r~ig~-vfQ~~~-lf-p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~  165 (377)
T PRK11607         89 YQRPINM-MFQSYA-LF-PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA  165 (377)
T ss_pred             HHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence             123454 565543 22 3478888887765444433222334567888888886  46778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+|||+++||...++++++.+.+
T Consensus       166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  194 (377)
T PRK11607        166 KRPKLLLLDEPMGALDKKLRDRMQLEVVD  194 (377)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998876654

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.6e-32  Score=241.92  Aligned_cols=179  Identities=16%  Similarity=0.166  Sum_probs=131.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVKP----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~~----  148 (255)
                      |.+|+++||++.|+.......+|+||||+|++||++||+|+||||||||+++|+|++... +|++|+ .++|....    
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            567999999999976322234789999999999999999999999999999999998511 237888 46653211    


Q ss_pred             --------CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCCcccc
Q 025256          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG  214 (255)
Q Consensus       149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~  214 (255)
                              ...+. ++++......+.+++.++........ +.........+.++++.+++.     .+.++.+|||||+
T Consensus        81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~  159 (326)
T PRK11022         81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS  159 (326)
T ss_pred             HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence                    12344 67765422222344433333222221 222222345567889998885     2567889999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|+||+.+|++||+||||++||+..+.++.++|.+.
T Consensus       160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l  199 (326)
T PRK11022        160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL  199 (326)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.97  E-value=4.5e-32  Score=232.17  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=126.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGARR----ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            478999999997643    6799999999999999999999999999999999997   99999 45553211       


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. ++++....  ..+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        74 ARLGV-VFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             hhEEE-eCCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            12233 44443221  2256666654433222222111233456778887775  3567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.++|.+
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~  177 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRA  177 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998865

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=2.8e-32  Score=226.71  Aligned_cols=172  Identities=16%  Similarity=0.207  Sum_probs=135.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++++++||+..|+..+    +|++|||++++||+++|+|+||+|||||||.|+|+.+   +.+|+ .++|....     
T Consensus         1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~   73 (237)
T COG0410           1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH   73 (237)
T ss_pred             CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence            36899999999999876    8899999999999999999999999999999999997   88999 56764331     


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                        ...|..+.-.+..++. .+|+.||.........-  .+..+.+.+.+++-+|....+.....|||||+|-+++||||+
T Consensus        74 ~r~r~Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm  152 (237)
T COG0410          74 ERARLGIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM  152 (237)
T ss_pred             HHHhCCeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence              2234433344555443 48888887654322221  122224556666666777788889999999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++|+||||+.||-|...++|.+.|.+.
T Consensus       153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~l  182 (237)
T COG0410         153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKEL  182 (237)
T ss_pred             cCCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988753

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.97  E-value=5.1e-32  Score=232.23  Aligned_cols=167  Identities=16%  Similarity=0.231  Sum_probs=126.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      +++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ..
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGDFV----ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECCEE----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            589999999998643    6799999999999999999999999999999999997   99999 4555321      11


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCC----CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~----~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                      ..+. +.++....  ..+++.++..+.....+.    ........+..+++.+++.  .+..+..||+||+||+++|+++
T Consensus        75 ~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  151 (239)
T cd03296          75 NVGF-VFQHYALF--RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL  151 (239)
T ss_pred             ceEE-EecCCccc--CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence            2333 55543321  225666665543222221    0111123456778888775  3556779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+..++.+.+++.+
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (239)
T cd03296         152 AVEPKVLLLDEPFGALDAKVRKELRRWLRR  181 (239)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.97  E-value=6.7e-32  Score=232.86  Aligned_cols=170  Identities=15%  Similarity=0.180  Sum_probs=127.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (250)
T PRK11264          1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL   73 (250)
T ss_pred             CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence            35799999999998643    6799999999999999999999999999999999997   99999 4554321      


Q ss_pred             ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~  214 (255)
                                +...+. +.++....  ...++.++..+.... .+.........+.++++.+++.  .+..+..||+||+
T Consensus        74 ~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         74 SQQKGLIRQLRQHVGF-VFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             cchhhHHHHhhhhEEE-EecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence                      112333 55543222  124666666543221 1221111223456778888775  3566789999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  190 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL  190 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.97  E-value=1.6e-32  Score=229.30  Aligned_cols=167  Identities=16%  Similarity=0.173  Sum_probs=141.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV  151 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~  151 (255)
                      ++++++|+|+|++..    |++|+||++++|++.|++|||||||||++|+|.|++.   |++|+ .++|+..    ....
T Consensus         2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI   74 (300)
T ss_pred             ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence            589999999999987    8899999999999999999999999999999999998   99999 4666432    2233


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      |+.-.-.|.|   .++++.+.+.+.....|++.+.....+..+++++.+.  ...++.+||.|++|++.+..+++++|++
T Consensus        75 GyLPEERGLy---~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL  151 (300)
T COG4152          75 GYLPEERGLY---PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL  151 (300)
T ss_pred             ccChhhhccC---ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence            4321222322   2478888889999999998887778889999999887  4567889999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||||+||||.+.+.+.+.+.+
T Consensus       152 lILDEPFSGLDPVN~elLk~~I~~  175 (300)
T COG4152         152 LILDEPFSGLDPVNVELLKDAIFE  175 (300)
T ss_pred             EEecCCccCCChhhHHHHHHHHHH
Confidence            999999999999999999888754

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.97  E-value=4.7e-32  Score=247.71  Aligned_cols=170  Identities=15%  Similarity=0.173  Sum_probs=131.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++|+++||++.|++..    +|+++||++++||+++|+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus         1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence            46899999999998744    7799999999999999999999999999999999998   99999 4555321      


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--CCC--CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g~~--~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                        ....|. +.++....+  .+++.++....+..+  .+.  ...+...+.++++.+++.  .+..+.+||+||+||+++
T Consensus        74 ~~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         74 AASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             HHhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence              123454 454433222  256666554422111  111  122344567888888886  356778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++|||||||++||+..+.+++++|.+.
T Consensus       151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l  185 (402)
T PRK09536        151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRL  185 (402)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>PRK10908 cell division protein FtsE; Provisional

Probab=99.97  E-value=4.6e-32  Score=230.02  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=126.0

Q ss_pred             eEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      |++++|+++.| ++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         1 ~l~~~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~   73 (222)
T PRK10908          1 MIRFEHVSKAYLGGRQ----ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE   73 (222)
T ss_pred             CEEEEeeEEEecCCCe----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence            47899999999 4432    6799999999999999999999999999999999997   99999 4555321       


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~  221 (255)
                          +...+. ++++....+  ..++.++........+.........+.++++.+++..  +..+..||+||+||+++|+
T Consensus        74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (222)
T PRK10908         74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR  150 (222)
T ss_pred             HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence                112333 555443212  2466666554332223222112234567788877753  5667799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (222)
T PRK10908        151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE  182 (222)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998875

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.3e-32  Score=237.40  Aligned_cols=172  Identities=15%  Similarity=0.125  Sum_probs=131.7

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|+.... ...+|+++||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4899999999975211 1127799999999999999999999999999999999998   99999 4665322       


Q ss_pred             ---CCCeeEEEecCC-CCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhh
Q 025256          148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ---~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~  219 (255)
                         ....|. ++++. ..++  ..++.+++.+.....++........+.++++.+++.    .+.++..||+||+||+++
T Consensus        79 ~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i  155 (287)
T PRK13637         79 SDIRKKVGL-VFQYPEYQLF--EETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI  155 (287)
T ss_pred             HHHhhceEE-EecCchhccc--cccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence               122344 56653 2222  146777766544444443222234567888888885    456778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++||+||||++||+..+.++.++|.+.
T Consensus       156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998753

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.97  E-value=3.2e-32  Score=229.49  Aligned_cols=167  Identities=14%  Similarity=0.117  Sum_probs=124.0

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEE
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV  154 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~  154 (255)
                      +++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....+. 
T Consensus         1 ~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~-   72 (213)
T cd03235           1 EVEDLTVSYGGHP----VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY-   72 (213)
T ss_pred             CcccceeEECCEE----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence            3679999997643    6799999999999999999999999999999999997   99999 4665321   223443 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhc-CC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      +.++.........++.++........ ..   ..........++++.+++.  .+.++..||+||+||+++|++++.+|+
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  152 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD  152 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            55543221111145655554321111 10   1111234566788887775  356678999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+..++.+.++|.+
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         153 LLLLDEPFAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=7e-32  Score=226.24  Aligned_cols=162  Identities=17%  Similarity=0.108  Sum_probs=124.9

Q ss_pred             EEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCCe
Q 025256           79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDV  151 (255)
Q Consensus        79 ~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~~  151 (255)
                      +++|+++.|++ ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...     ....
T Consensus         1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i   73 (205)
T cd03226           1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI   73 (205)
T ss_pred             CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence            36799999976 33    7799999999999999999999999999999999997   99999 4555322     1234


Q ss_pred             eEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          152 ATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       152 g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      +. +.++.. .++  ..++.++..+.....+    .....+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 ~~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  146 (205)
T cd03226          74 GY-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD  146 (205)
T ss_pred             EE-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence            44 555532 122  2466665544322211    1234567888888876  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+||||++||+..++.+.+++.+.
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226         147 LLIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.97  E-value=4.7e-32  Score=228.07  Aligned_cols=165  Identities=14%  Similarity=0.140  Sum_probs=124.1

Q ss_pred             EEccceeeccc--cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           79 EARCMDEVYDA--LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        79 ~i~~lsk~y~~--~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++|+++.|++  ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~~~~l~~~~~~~~~~----il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (211)
T cd03225           1 ELKNLSFSYPDGARP----ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKEL   73 (211)
T ss_pred             CceeEEEecCCCCee----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHH
Confidence            36799999976  33    6799999999999999999999999999999999997   99999 45553211       


Q ss_pred             -CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          149 -PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 -~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ...+. +.++.. .++  .+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~  150 (211)
T cd03225          74 RRKVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLA  150 (211)
T ss_pred             HhhceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence             12333 555432 122  246666654432222221111223456788888775  35677899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+..++.+.++|.+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         151 MDPDILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.97  E-value=8.4e-32  Score=234.93  Aligned_cols=169  Identities=15%  Similarity=0.216  Sum_probs=128.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++|+++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....     
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS   77 (269)
T ss_pred             cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence            45799999999997643    6799999999999999999999999999999999997   99999 46553211     


Q ss_pred             ------CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                            ...+. +.++....  ..+++.++........ +.........+.++++.+++.  .+..+..||+||+||+++
T Consensus        78 ~~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l  154 (269)
T PRK11831         78 RLYTVRKRMSM-LFQSGALF--TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL  154 (269)
T ss_pred             hHHHHhhcEEE-EecccccC--CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence                  12333 55543322  2256666665432221 111111123456678888876  356678999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (269)
T PRK11831        155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE  188 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.97  E-value=7.1e-32  Score=230.14  Aligned_cols=167  Identities=21%  Similarity=0.238  Sum_probs=126.4

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            46889999998643    7799999999999999999999999999999999997   99999 4555321         


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....+. +.++... + ..+++.++........+.........+..+++.+++.  .+..+..||+||+||+++|++++.
T Consensus        74 ~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          74 RLGIGY-LPQEASI-F-RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             hccEEE-ecCCccc-c-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            012333 4444322 1 2256666665433222322112223456778887775  356677999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++||+||||++||+.+++.+.+++.+.
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~  179 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKIL  179 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.97  E-value=8.5e-32  Score=226.14  Aligned_cols=162  Identities=18%  Similarity=0.214  Sum_probs=126.4

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------CC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~~  150 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      ..
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGKKR----VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECCeE----eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            46889999997643    7799999999999999999999999999999999997   99999 46554321      12


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. ++++... + ..+++.++........+    .......++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  146 (208)
T cd03268          74 IGA-LIEAPGF-Y-PNLTARENLRLLARLLG----IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD  146 (208)
T ss_pred             EEE-ecCCCcc-C-ccCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence            333 4544332 1 22566666655433222    1345567788888775  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+..++.+.+++.+
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~  171 (208)
T cd03268         147 LLILDEPTNGLDPDGIKELRELILS  171 (208)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.97  E-value=8.5e-32  Score=242.93  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=132.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      +|+++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++...      ..
T Consensus         2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            488999999998744    7799999999999999999999999999999999998   99999 4666422      12


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhc----CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                      ..+. ++++... + +.+++.+|..+.....    +.........+.++++.+++.  .+.++..||+||+||+++||||
T Consensus        75 ~i~~-v~Q~~~l-~-p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL  151 (353)
T PRK10851         75 KVGF-VFQHYAL-F-RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL  151 (353)
T ss_pred             CEEE-EecCccc-C-CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            3444 5655432 2 2367777776644321    111112234567888888886  4677889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+..+++++++|.+.
T Consensus       152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l  182 (353)
T PRK10851        152 AVEPQILLLDEPFGALDAQVRKELRRWLRQL  182 (353)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-31  Score=239.49  Aligned_cols=176  Identities=15%  Similarity=0.121  Sum_probs=132.7

Q ss_pred             cceEEEccceeeccccc------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC
Q 025256           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~  147 (255)
                      +++|+++||++.|+...      ..+.++++|||+|++|+++||+|+||||||||+++|+|++.   |++|+ .+++...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            46899999999996321      12347899999999999999999999999999999999997   89999 4665321


Q ss_pred             -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (255)
                                 +...+. ++++.+....+.+++.++........ +.........+.++++.+++.   .+.++.+||||
T Consensus        80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG  158 (327)
T PRK11308         80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG  158 (327)
T ss_pred             CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence                       123444 67765322223345544443322221 222222334568889988885   36788899999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|+||+.+|++||+||||++||...+.++.++|.+.
T Consensus       159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l  200 (327)
T PRK11308        159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL  200 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.97  E-value=7.7e-32  Score=226.88  Aligned_cols=166  Identities=17%  Similarity=0.132  Sum_probs=126.7

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~  149 (255)
                      ++++|+++.|++..    +++++||++++| +++|+||||||||||+++|+|+++   |++|+ .+++....       .
T Consensus         1 i~~~~~~~~~~~~~----~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGKKR----ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECCEE----EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            46889999997643    679999999999 999999999999999999999997   99999 45553221       1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++....  ..+++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        73 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  149 (211)
T cd03264          73 RIGY-LPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP  149 (211)
T ss_pred             heEE-ecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2333 45544322  2256666665443333332222234566778888775  35677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|+||||++||+.+++.+.+++.+.
T Consensus       150 ~llllDEPt~~LD~~~~~~l~~~l~~~  176 (211)
T cd03264         150 SILIVDEPTAGLDPEERIRFRNLLSEL  176 (211)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999763

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=1.2e-31  Score=224.71  Aligned_cols=164  Identities=19%  Similarity=0.186  Sum_probs=127.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       .
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            478999999998643    6799999999999999999999999999999999997   99999 4555321       1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. +..+...  ...+++.++........+.   .....+.++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            12333 3333221  2225666666554322221   2335567788888875  4567779999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+..++.+.++|.+
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998875

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.97  E-value=8.3e-32  Score=226.95  Aligned_cols=167  Identities=17%  Similarity=0.134  Sum_probs=125.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      ++++|+++.|++. ..  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            4688999999642 12  6799999999999999999999999999999999997   99999 45553211        


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                         ...+. +.++....  ..+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        75 ~~~~~i~~-v~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          75 YLRRKIGV-VFQDFRLL--PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             HHHHheEE-EecCchhc--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence               12333 55543222  2256667665543333322211223456778887775  3556779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|+++|+||||++||+.+++.+.+++.+
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.97  E-value=7.7e-32  Score=225.89  Aligned_cols=164  Identities=12%  Similarity=0.021  Sum_probs=125.2

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----------
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----------  147 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----------  147 (255)
                      ++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...           
T Consensus         1 i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGDKI----ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECCEE----EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            468999998643    6799999999999999999999999999999999997   99999 4555321           


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....+. +.++.. ++ ...++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++|+
T Consensus        74 ~~~~i~~-~~q~~~-~~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~  150 (206)
T TIGR03608        74 RREKLGY-LFQNFA-LI-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL  150 (206)
T ss_pred             HHhCeeE-Eecchh-hc-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence             012333 444432 22 1256666665543322322222334567788888875  35667899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.+++.+.++|.+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.97  E-value=7.9e-32  Score=226.95  Aligned_cols=167  Identities=17%  Similarity=0.203  Sum_probs=125.7

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         1 l~~~~l~~~~~~~~----~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGDFH----VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECCeE----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            46889999998643    6799999999999999999999999999999999997   99999 45553221        


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhh
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l  223 (255)
                        ...+. +.++....  ..+++.++...... ..+.........+.++++.+++..  +..+..||+||+||+++|+++
T Consensus        74 ~~~~i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          74 LRQKVGM-VFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             HHhcceE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence              12333 44443322  22466666554321 122211112234567788877753  567789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|+++|+||||++||+.+++.+.+++.+.
T Consensus       151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  181 (213)
T cd03262         151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDL  181 (213)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.97  E-value=1.5e-31  Score=227.35  Aligned_cols=173  Identities=18%  Similarity=0.199  Sum_probs=125.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR   77 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence            47899999999753101126799999999999999999999999999999999997   99999 45553211       


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHH-HHHHHHhhcCC---CCCCCCCCCccccchhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~-~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~  219 (255)
                          ...+. +.++........+++.++..+.....+.... ..... ..++++.+++.   .+..+..||+||+||+++
T Consensus        78 ~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l  156 (228)
T cd03257          78 KIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI  156 (228)
T ss_pred             HHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence                12333 5555421112235666665543322221111 11111 23677777774   356778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (228)
T cd03257         157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKK  190 (228)
T ss_pred             HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.97  E-value=1.4e-31  Score=239.63  Aligned_cols=176  Identities=14%  Similarity=0.136  Sum_probs=133.6

Q ss_pred             cceEEEccceeeccccc---------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256           75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~---------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~  144 (255)
                      .++|+++||++.|+...         ....+++++||+|++||+++|+|+||||||||+++|+|++.   |++|+ .++|
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G   82 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG   82 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence            46899999999996311         12347899999999999999999999999999999999997   99999 4666


Q ss_pred             CCC-----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--CCCCCCcHHHHHHHHHhhcCC---CCCCCCC
Q 025256          145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS  208 (255)
Q Consensus       145 ~~~-----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g~~~~~~~~~~~~~l~~l~l~---~~~~~~~  208 (255)
                      ...           +...+ ++.++......+.+++.+++.+.....  ++........+.++++.+++.   .+.++.+
T Consensus        83 ~~i~~~~~~~~~~~r~~i~-~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~  161 (331)
T PRK15079         83 KDLLGMKDDEWRAVRSDIQ-MIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE  161 (331)
T ss_pred             EECCcCCHHHHHHHhCceE-EEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence            321           12334 367765311222356666665543322  122222234556788888884   4678889


Q ss_pred             CCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||+||+++|+||+.+|++||+||||++||...+.++.++|.+.
T Consensus       162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (331)
T PRK15079        162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL  207 (331)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-31  Score=244.06  Aligned_cols=152  Identities=14%  Similarity=0.184  Sum_probs=120.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------------CCeeEEEecCCCCC
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------------PDVATVLPMDGFHL  162 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------------~~~g~~i~~d~~~~  162 (255)
                      +++++||+|++|++++|+||||||||||+|+|+|++.   |++|+ .+++....            ...+. +.++....
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~  118 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM  118 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence            6899999999999999999999999999999999998   99999 46653211            13454 55543322


Q ss_pred             cCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                        ..+++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|++|+.+|++||+||||++||
T Consensus       119 --~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD  196 (400)
T PRK10070        119 --PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD  196 (400)
T ss_pred             --CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence              2367777776654444433222234567888888886  456778999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 025256          241 GGVWKDVSSMFDE  253 (255)
Q Consensus       241 ~~~~~~l~~ll~~  253 (255)
                      +..++++.++|.+
T Consensus       197 ~~~r~~l~~~L~~  209 (400)
T PRK10070        197 PLIRTEMQDELVK  209 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999865

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=3e-32  Score=228.16  Aligned_cols=171  Identities=20%  Similarity=0.250  Sum_probs=135.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---C---
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---P---  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~---  148 (255)
                      +++++++|+|+||+..    |++||||++++||+++||||||||||||+++|+|.++   |++|+ .+++...   +   
T Consensus         3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~   75 (250)
T COG0411           3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR   75 (250)
T ss_pred             ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence            5789999999999987    9999999999999999999999999999999999998   99999 5777532   1   


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhc-------CCC-----CCCcHHHHHHHHHhhcCCC--CCCCCCCCccc
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV  213 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-------g~~-----~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~  213 (255)
                       ...|..=.++.-.+ .+++++.||........       +.+     +....+...++++.+++..  +.....||+|+
T Consensus        76 iar~Gi~RTFQ~~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          76 IARLGIARTFQITRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHhccceeecccccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence             12333222222222 24589988886653311       111     1223455688999999874  55667999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|+||+.+|++|+||||.+|+.+....++.++|.+.
T Consensus       155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i  195 (250)
T COG0411         155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL  195 (250)
T ss_pred             hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998763

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.5e-31  Score=235.32  Aligned_cols=171  Identities=16%  Similarity=0.127  Sum_probs=129.7

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      +++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            6899999999974210 1126799999999999999999999999999999999998   99999 46664221      


Q ss_pred             ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                            ...+. +.++.. .++  .+++.++..+.....+.........+.++++.+++.   .+..+..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~  155 (287)
T PRK13641         79 NLKKLRKKVSL-VFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA  155 (287)
T ss_pred             hHHHHHhceEE-EEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence                  12344 555531 222  146667665433333322222234567888888885   36778899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~  190 (287)
T PRK13641        156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD  190 (287)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.2e-31  Score=230.13  Aligned_cols=169  Identities=18%  Similarity=0.213  Sum_probs=126.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (241)
T PRK10895          1 MATLTAKNLAKAYKGRR----VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH   73 (241)
T ss_pred             CceEEEeCcEEEeCCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            45799999999998643    7799999999999999999999999999999999997   99999 4555321      


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~  221 (255)
                         +...+. ++++....  ..+++.++........+ ...........++++.+++..  +..+..||+||+||+++|+
T Consensus        74 ~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (241)
T PRK10895         74 ARARRGIGY-LPQEASIF--RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR  150 (241)
T ss_pred             HHHHhCeEE-eccCCccc--ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence               112333 44443221  12466665543321111 111112234567788777753  5667799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+..++.+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (241)
T PRK10895        151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH  182 (241)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988865

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-31  Score=235.53  Aligned_cols=171  Identities=14%  Similarity=0.080  Sum_probs=131.6

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .++++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++....      
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999974211 1227799999999999999999999999999999999998   99999 46664221      


Q ss_pred             ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                            ...|. ++++.. .++.  .++.++..+.....+.........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (290)
T PRK13634         79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA  155 (290)
T ss_pred             hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence                  12444 555532 2222  46777766544444443222234567888888885   35678899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|+.+|++||+||||++||+..+.++.+++.+
T Consensus       156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~  190 (290)
T PRK13634        156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK  190 (290)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998865

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.97  E-value=1.5e-31  Score=229.70  Aligned_cols=166  Identities=14%  Similarity=0.117  Sum_probs=126.8

Q ss_pred             EEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        78 l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ++++||++.|++ ..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (242)
T cd03295           1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL   73 (242)
T ss_pred             CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence            467899999986 33    6799999999999999999999999999999999997   99999 46653211       


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchhhhhhhh
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~~a~~l  223 (255)
                       ...+. +.++....  ..+++.++..+.....+.........+.++++.+++..    +..+..||+||+||+++|+++
T Consensus        74 ~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral  150 (242)
T cd03295          74 RRKIGY-VIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL  150 (242)
T ss_pred             hcceEE-EccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH
Confidence             12233 44443222  22566676655433223221122345678888888763    566779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         151 AADPPLLLMDEPFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-31  Score=233.70  Aligned_cols=170  Identities=17%  Similarity=0.160  Sum_probs=129.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++||++.|+.. ..  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   76 (274)
T PRK13647          3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW   76 (274)
T ss_pred             ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            379999999999631 12  6799999999999999999999999999999999998   99999 46653221      


Q ss_pred             --CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 --~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                        ...|. ++++.. .+.  ..++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|+||
T Consensus        77 ~~~~i~~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL  153 (274)
T PRK13647         77 VRSKVGL-VFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL  153 (274)
T ss_pred             HHhhEEE-EecChhhhhc--cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence              22344 555532 122  146666665433332332212234456778888875  4567789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+..+.++.+++.+.
T Consensus       154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  184 (274)
T PRK13647        154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRL  184 (274)
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-31  Score=229.12  Aligned_cols=167  Identities=17%  Similarity=0.149  Sum_probs=126.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGAHQ----ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECCee----eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            589999999998643    6799999999999999999999999999999999997   99999 4655321        


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHH-HHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~  218 (255)
                            +...+. ++++... + ..+++.++.... ....+.........+.++++.+++..  +..+..||+||+||++
T Consensus        75 ~~~~~~~~~i~~-~~q~~~~-~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  151 (242)
T PRK11124         75 KAIRELRRNVGM-VFQQYNL-W-PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA  151 (242)
T ss_pred             hhHHHHHhheEE-EecCccc-c-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence                  012333 4444322 1 224666655432 11223222112334567788887753  5667799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1e-31  Score=230.66  Aligned_cols=167  Identities=19%  Similarity=0.205  Sum_probs=124.4

Q ss_pred             eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      +++++||++.|+ +..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         1 ~l~~~~l~~~~~~~~~----il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         1 MLEVENLSKVYPNGKQ----ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             CeEEEeeeeecCCCcc----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence            478999999997 433    6799999999999999999999999999999999997   99999 4655321       


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccc
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV  213 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~  213 (255)
                          ....+. +.++.....  .+++.++.......        .+.........+.++++.+++..  +..+..||+||
T Consensus        74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (243)
T TIGR02315        74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ  150 (243)
T ss_pred             HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence                112333 454433221  24555554321110        01111122334567788887753  56677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  190 (243)
T TIGR02315       151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR  190 (243)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=1.5e-31  Score=228.65  Aligned_cols=166  Identities=19%  Similarity=0.185  Sum_probs=125.4

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGGLV----ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECCEE----EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            46789999997643    6799999999999999999999999999999999997   99999 45553211        


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC----------CCCcHHHHHHHHHhhcCCC--CCCCCCCCccccc
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q  215 (255)
                       ...+. +.++... + ..+++.++..+.....+..          .......+.++++.+++..  +..+..||+||+|
T Consensus        74 ~~~i~~-v~q~~~l-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  150 (236)
T cd03219          74 RLGIGR-TFQIPRL-F-PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR  150 (236)
T ss_pred             hcCEEE-Eeccccc-c-cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence             11333 4544332 2 2256766665543222111          1112234567788887753  5667799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  188 (236)
T cd03219         151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE  188 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2.7e-31  Score=223.18  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=125.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~~  150 (255)
                      +++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++....     ..
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            689999999998643    6799999999999999999999999999999999997   99999 45553211     12


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +..+...  ....++.++........+    .......++++.+++..  +..+..||+||+||+++|++++.+|+
T Consensus        75 ~~~-~~~~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  147 (207)
T PRK13539         75 CHY-LGHRNAM--KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP  147 (207)
T ss_pred             cEE-ecCCCcC--CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            233 3322221  122455565544322211    12344677888888753  56677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+..++++.++|.+
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~  172 (207)
T PRK13539        148 IWILDEPTAALDAAAVALFAELIRA  172 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.97  E-value=2e-31  Score=226.71  Aligned_cols=166  Identities=16%  Similarity=0.120  Sum_probs=126.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCcc-ccCCCCC----
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll-----~~~~p~~G~-~~~~~~~----  147 (255)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++     .   |++|+ .+++...    
T Consensus         1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            46889999998643    779999999999999999999999999999999999     7   99999 4655321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCCC--CCC--CCCCCccccch
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP  216 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~~--~~~--~~~lS~G~~qr  216 (255)
                            ....+. ++++... +  .+++.++..+.....+.... .....+.++++.+++..  +..  +..||+||+||
T Consensus        74 ~~~~~~~~~i~~-~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr  149 (227)
T cd03260          74 VDVLELRRRVGM-VFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR  149 (227)
T ss_pred             hHHHHHHhhEEE-EecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence                  112343 5555432 2  25777766543333332111 12345567888888763  233  47999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  187 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL  187 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.5e-31  Score=233.52  Aligned_cols=168  Identities=19%  Similarity=0.170  Sum_probs=124.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      |++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            488999999998643    6799999999999999999999999999999999998   99999 46553221       


Q ss_pred             ---CCeeEEEecCCCC-CcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. +.++... ...  .++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara  150 (271)
T PRK13638         74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA  150 (271)
T ss_pred             HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence               12333 4554321 111  23444444332223322111223455677777765  356678999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  182 (271)
T PRK13638        151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI  182 (271)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-31  Score=233.94  Aligned_cols=173  Identities=13%  Similarity=0.133  Sum_probs=131.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD   78 (279)
T ss_pred             ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            3799999999997421 1126799999999999999999999999999999999998   99999 46653221      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                        ...+. ++++...... ..++.+++.+.....++..........++++.+++.  .+..+..||+||+||+++|++++
T Consensus        79 ~~~~i~~-v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~  156 (279)
T PRK13650         79 IRHKIGM-VFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVA  156 (279)
T ss_pred             HHhhceE-EEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence              12344 5555321111 246667665544333432222234567888888886  35677899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+..++.+.++|.+.
T Consensus       157 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l  186 (279)
T PRK13650        157 MRPKIIILDEATSMLDPEGRLELIKTIKGI  186 (279)
T ss_pred             cCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988653

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-31  Score=235.18  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=131.7

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ||+++||++.|+.... ...+|+++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++...       
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4889999999974211 1126799999999999999999999999999999999998   99999 4665321       


Q ss_pred             -----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                           +...|. +.++.. .++.  .++.++..+.....+.+.......+.++++.+++.   .+..+..||+||+||++
T Consensus        78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva  154 (288)
T PRK13643         78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA  154 (288)
T ss_pred             cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence                 112344 555531 2222  46677766554444443322334567888888874   35677899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l  190 (288)
T PRK13643        155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI  190 (288)
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998753

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.97  E-value=1.2e-31  Score=237.65  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=123.4

Q ss_pred             eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CCCeeEEEe
Q 025256           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP  156 (255)
Q Consensus        85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~  156 (255)
                      |.|++..    +|+++||+|++|+++||+||||||||||+|+|+|+++   |++|+ .+++...       ....|. +.
T Consensus         1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~   72 (302)
T TIGR01188         1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP   72 (302)
T ss_pred             CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence            4576533    7799999999999999999999999999999999998   99999 4555322       123454 45


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      ++...  ...+++.++..+.....+...........++++.+++.  .+.++..||+||+||+++|+|++.+|++||+||
T Consensus        73 q~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  150 (302)
T TIGR01188        73 QYASV--DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE  150 (302)
T ss_pred             CCCCC--CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            44332  22367777776654444433222234567888888886  466778999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHh
Q 025256          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++||+..++.+++++.+
T Consensus       151 Pt~gLD~~~~~~l~~~l~~  169 (302)
T TIGR01188       151 PTTGLDPRTRRAIWDYIRA  169 (302)
T ss_pred             CCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999875

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=2.5e-31  Score=227.93  Aligned_cols=166  Identities=19%  Similarity=0.181  Sum_probs=124.2

Q ss_pred             EEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        78 l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ++++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   73 (241)
T cd03256           1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL   73 (241)
T ss_pred             CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence            468899999975 33    7799999999999999999999999999999999997   99999 46653211       


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~  214 (255)
                          ...+. ++++....  ..+++.++.......        .+.........+.++++.+++.  .+..+..||+||+
T Consensus        74 ~~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  150 (241)
T cd03256          74 RQLRRQIGM-IFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ  150 (241)
T ss_pred             HHHHhccEE-EcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence                12333 44443221  124665555432110        1111112234456778888775  3567789999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (241)
T cd03256         151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR  189 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3e-31  Score=232.34  Aligned_cols=170  Identities=15%  Similarity=0.141  Sum_probs=129.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      |.+++++||++.|++. ..  +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++....     
T Consensus         1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            4679999999999642 11  6799999999999999999999999999999999997   99999 46653221     


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. ++++.. .+.  ..++.++..+.....+...........++++.+++.  .+..+..||+||+||+++|++
T Consensus        75 ~~~~~i~~-v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara  151 (277)
T PRK13652         75 EVRKFVGL-VFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV  151 (277)
T ss_pred             HHHhheEE-EecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence               12343 555432 122  246666665433322322211223456788887776  356678999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+.+++.+.+++.+
T Consensus       152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.97  E-value=2.2e-31  Score=225.60  Aligned_cols=165  Identities=18%  Similarity=0.171  Sum_probs=122.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            46889999998643    6799999999999999999999999999999999997   99999 4555321         


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhh-cCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      ....+. ++++... + ..+++.++..+.....+  ..........+++.+ .+.  .+..+..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~~-~-~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          74 RAGIGY-VPEGRRI-F-PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             hcCeEE-ecccccc-C-CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence            112333 4444322 1 22566666554332221  111223344556655 233  45677799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+..++.+.++|.+.
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~  178 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIREL  178 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.97  E-value=4.7e-31  Score=236.30  Aligned_cols=177  Identities=15%  Similarity=0.181  Sum_probs=131.1

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC--
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK--  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~--  147 (255)
                      .+++++++||++.|+.......+++++||+|++||+++|+|+||||||||+++|+|++.   |+   +|+ .++|...  
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            45789999999999642222347899999999999999999999999999999999997   64   898 4666322  


Q ss_pred             ---------C-CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCc
Q 025256          148 ---------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (255)
Q Consensus       148 ---------~-~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~  211 (255)
                               + ...+. ++++......+.+++.++..+..... +.........+.++++.+++..     +.++.+|||
T Consensus        86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg  164 (330)
T PRK09473         86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG  164 (330)
T ss_pred             CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence                     1 13343 67765422233345544443322222 2211122345677888888752     357789999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++|+.+|++||+||||++||...+.++.++|.+.
T Consensus       165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (330)
T PRK09473        165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL  207 (330)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=236.94  Aligned_cols=179  Identities=12%  Similarity=0.111  Sum_probs=130.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVKP----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~~----  148 (255)
                      |++|+++||++.|+.......+++++||+|++||+++|+|+||||||||+++|+|++... .|++|+ .+++....    
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            468999999999953211233789999999999999999999999999999999998411 257898 46653210    


Q ss_pred             --------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-----C-CCcHHHHHHHHHhhcCCC-----CCCCCCC
Q 025256          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----W-TFNPLLLLNCLKNLRNQG-----SVYAPSF  209 (255)
Q Consensus       149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-----~-~~~~~~~~~~l~~l~l~~-----~~~~~~l  209 (255)
                              ...+. ++++........+++.++...........     . ......+.++++.+++..     +.++.+|
T Consensus        81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L  159 (330)
T PRK15093         81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL  159 (330)
T ss_pred             HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence                    12343 66665422222244444443221111110     0 112345678899998863     5677899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+||+++|+||+.+|++||+||||++||+..+.++.++|.+.
T Consensus       160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  204 (330)
T PRK15093        160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL  204 (330)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999763

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.6e-31  Score=235.59  Aligned_cols=172  Identities=12%  Similarity=0.131  Sum_probs=132.0

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      +|+++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK   78 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence            5899999999975311 1126799999999999999999999999999999999998   99999 4543210       


Q ss_pred             -------------------------CCCeeEEEecCC-CCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC
Q 025256          148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (255)
Q Consensus       148 -------------------------~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~  201 (255)
                                               ....|. ++++. ..+..  .++.+++.+.....+.........+.++++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  155 (305)
T PRK13651         79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD  155 (305)
T ss_pred             cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence                                     112344 55553 22221  46677766554444543333345568888988885


Q ss_pred             ---CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                         .+.++..||+||+||+++|++|+.+|++||+||||++||+..++.+.++|.+.
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l  211 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL  211 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence               36677899999999999999999999999999999999999999999998753

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=2.8e-31  Score=227.73  Aligned_cols=167  Identities=16%  Similarity=0.193  Sum_probs=126.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (240)
T PRK09493          1 MIEFKNVSKHFGPTQ----VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER   73 (240)
T ss_pred             CEEEEeEEEEECCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence            478999999998643    6799999999999999999999999999999999997   99999 46653211       


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. +.++....  ..+++.++..+... ..+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  150 (240)
T PRK09493         74 LIRQEAGM-VFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA  150 (240)
T ss_pred             HHhhceEE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence               12333 45443222  12466665544221 11221112233456788888775  356677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+||||++||+.+++.+.++|.+
T Consensus       151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.3e-31  Score=227.88  Aligned_cols=173  Identities=17%  Similarity=0.086  Sum_probs=128.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~----  147 (255)
                      |++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++.  ..|++|+ .+++...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   76 (250)
T PRK14247          1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD   76 (250)
T ss_pred             CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence            56799999999998643    67999999999999999999999999999999999851  0136898 4555321    


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                          ....+. ++++....  ..+++.++..+.....+..  .......+.++++.+++.      .+..+..||+||+|
T Consensus        77 ~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q  153 (250)
T PRK14247         77 VIELRRRVQM-VFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ  153 (250)
T ss_pred             HHHHhccEEE-EeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence                122343 55553322  2256777665433222211  111123456778887763      35667799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL  192 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998763

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.97  E-value=3.1e-31  Score=229.82  Aligned_cols=162  Identities=13%  Similarity=0.095  Sum_probs=126.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CCCe
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PPDV  151 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~---~~~~  151 (255)
                      ++|+++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|++ +++...   ....
T Consensus        11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i   83 (257)
T PRK11247         11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT   83 (257)
T ss_pred             CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence            5799999999998643    6799999999999999999999999999999999997   999994 554321   2234


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      +. +.++....  ..+++.++..+.     ... .......++++.+++..  +..+..||+||+||+++|++++.+|++
T Consensus        84 ~~-v~q~~~l~--~~~tv~enl~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l  154 (257)
T PRK11247         84 RL-MFQDARLL--PWKKVIDNVGLG-----LKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL  154 (257)
T ss_pred             EE-EecCccCC--CCCcHHHHHHhc-----ccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            44 55544322  124555554331     111 12345677888888763  566789999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||||++||+..++.+.++|.+
T Consensus       155 llLDEPt~~LD~~~~~~l~~~L~~  178 (257)
T PRK11247        155 LLLDEPLGALDALTRIEMQDLIES  178 (257)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999998865

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.1e-31  Score=227.70  Aligned_cols=167  Identities=16%  Similarity=0.129  Sum_probs=126.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCCC--
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP--  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~~--  148 (255)
                      +++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |+     +|+ .+++....  
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence            478999999998643    6799999999999999999999999999999999997   88     998 46553221  


Q ss_pred             --------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (255)
                              ...+. ++++.. ++.  .++.++..+.....+. ...........+++.+++.      .+..+..||+||
T Consensus        74 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  149 (247)
T TIGR00972        74 KIDVVELRRRVGM-VFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ  149 (247)
T ss_pred             ccchHHHHhheEE-EecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence                    12333 454432 221  4666665543322231 1112234567788888875      245677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|+++|+||||++||+..+..+.++|.+.
T Consensus       150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  190 (247)
T TIGR00972       150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL  190 (247)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.97  E-value=6.1e-31  Score=228.06  Aligned_cols=170  Identities=15%  Similarity=0.158  Sum_probs=125.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-----CC-
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP-  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-----~~-  148 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++..     .. 
T Consensus         5 ~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~   77 (258)
T PRK11701          5 PLLSVRGLTKLYGPRK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA   77 (258)
T ss_pred             ceEEEeeeEEEcCCce----eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence            4799999999998643    6799999999999999999999999999999999997   99999 455542     11 


Q ss_pred             -----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (255)
Q Consensus       149 -----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~  213 (255)
                                 ...+. ++++........++..++..+.....+... ........++++.+++..   +..+..||+||
T Consensus        78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM  156 (258)
T ss_pred             CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence                       12333 555532111112344444432211122110 111234567788888752   46778999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++++.+++.+
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  196 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=4.5e-31  Score=228.98  Aligned_cols=167  Identities=17%  Similarity=0.200  Sum_probs=125.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGGRT----LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            589999999998643    6799999999999999999999999999999999997   99999 4555321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc-
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG-  224 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~-  224 (255)
                      ....+. +.++....+  .+++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++ 
T Consensus        75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~  151 (258)
T PRK13548         75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ  151 (258)
T ss_pred             hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            112333 455433212  246655554322111111111223456778888775  36678899999999999999999 


Q ss_pred             -----cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 -----~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                           .+|++||+||||++||+..++.+.++|.+
T Consensus       152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (258)
T PRK13548        152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ  185 (258)
T ss_pred             ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                 59999999999999999999999998875

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.97  E-value=5.2e-31  Score=229.41  Aligned_cols=173  Identities=17%  Similarity=0.159  Sum_probs=128.4

Q ss_pred             eEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---
Q 025256           77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---  147 (255)
                      +++++||++.|++..     ....+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~   78 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL   78 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence            589999999996310     01227799999999999999999999999999999999997   99999 4665321   


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (255)
                              ....+. +.++........+++.++........ ++........+.++++.+++.   .+..+..||+||+|
T Consensus        79 ~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q  157 (265)
T TIGR02769        79 DRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ  157 (265)
T ss_pred             CHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence                    112343 55553211222356666554332222 222222334567888888874   35677899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  195 (265)
T TIGR02769       158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK  195 (265)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.97  E-value=9.1e-31  Score=222.67  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=127.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (225)
T PRK10247          6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI   78 (225)
T ss_pred             ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence            4799999999998643    6799999999999999999999999999999999997   99999 4555321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhh
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                       ....+. +.++.. ++.  .++.++..+.....+.  ........++++.+++.   .+.++..||+||+||+++|+++
T Consensus        79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  152 (225)
T PRK10247         79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL  152 (225)
T ss_pred             HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence             112333 455433 222  3565655442211111  11234556888888884   3567889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|+++|+||||++||+..++.+.++|.+
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        153 QFMPKVLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.97  E-value=5.9e-31  Score=225.94  Aligned_cols=168  Identities=15%  Similarity=0.193  Sum_probs=126.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         1 ~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   73 (242)
T TIGR03411         1 PILYLEGLSVSFDGFK----ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ   73 (242)
T ss_pred             CeEEEEeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence            3689999999997643    7799999999999999999999999999999999997   99999 45553211      


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhc-C-------CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccc
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g-------~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q  215 (255)
                         ...+. +.++....  ..+++.++........ .       .........+.++++.+++..  +..+..||+||+|
T Consensus        74 ~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q  150 (242)
T TIGR03411        74 IARAGIGR-KFQKPTVF--ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ  150 (242)
T ss_pred             HHhcCeeE-eccccccC--CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence               11333 44443221  2256666655432110 0       001112334677888887763  5667799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  188 (242)
T TIGR03411       151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS  188 (242)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6e-31  Score=227.39  Aligned_cols=170  Identities=14%  Similarity=0.075  Sum_probs=126.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCCC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~~  148 (255)
                      +.+++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |     ++|+ .+++....
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267          2 KFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             cceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence            56899999999998643    6799999999999999999999999999999999986   5     4898 45553211


Q ss_pred             ----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCC
Q 025256          149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD  210 (255)
Q Consensus       149 ----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS  210 (255)
                                ...+. +.++....  ..+++.++..+.....+..  .......+.++++.+++.      .+..+..||
T Consensus        75 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  151 (253)
T PRK14267         75 SPDVDPIEVRREVGM-VFQYPNPF--PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS  151 (253)
T ss_pred             ccccChHHHhhceeE-EecCCccC--CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence                      12333 45543322  2256666665433222221  111123456677777653      345677999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  195 (253)
T PRK14267        152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL  195 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998753

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.6e-31  Score=231.42  Aligned_cols=171  Identities=16%  Similarity=0.156  Sum_probs=129.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++||++.|++...  .+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         4 ~~l~~~~l~~~~~~~~~--~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAAT--YALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCCc--cceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            47999999999975211  26799999999999999999999999999999999998   99999 46664221      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                        ...+. ++++..... ...++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|++++
T Consensus        79 ~~~~i~~-~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635         79 VRRQVGM-VFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             HhhheEE-EEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence              12343 555431111 1146666665443333332222234467788887775  45677899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.+++.+.++|.+
T Consensus       157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        157 LQPDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.9e-31  Score=231.71  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=130.8

Q ss_pred             ceEEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           76 PVVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ++|+++||++.|++ ..    +++++||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         4 ~~l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~   76 (283)
T PRK13636          4 YILKVEELNYNYSDGTH----ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKG   76 (283)
T ss_pred             ceEEEEeEEEEeCCCCe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcch
Confidence            47999999999963 22    6799999999999999999999999999999999998   99999 4665322      


Q ss_pred             ----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                          +...|. ++++.. .+.  ..++.++..+.....+++.......+..+++.+++.  .+..+..||+||+||+++|
T Consensus        77 ~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~la  153 (283)
T PRK13636         77 LMKLRESVGM-VFQDPDNQLF--SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIA  153 (283)
T ss_pred             HHHHHhhEEE-EecCcchhhc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHH
Confidence                112344 555532 222  246667665544334433222234567788888876  4677889999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|++||+||||++||+.+++.+.+++.+.
T Consensus       154 raL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l  187 (283)
T PRK13636        154 GVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM  187 (283)
T ss_pred             HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988653

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.97  E-value=6.7e-31  Score=219.20  Aligned_cols=162  Identities=16%  Similarity=0.115  Sum_probs=124.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            46889999998744    7799999999999999999999999999999999997   99999 4555321       11


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++...  ...+++.++........+    .......++++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~~--~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  146 (198)
T TIGR01189        74 NILY-LGHLPGL--KPELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA  146 (198)
T ss_pred             heEE-eccCccc--ccCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence            2333 3433221  122566666554332222    1123466778887775  35677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+..++.+.+++.+
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189       147 PLWILDEPTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999875

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.1e-31  Score=231.19  Aligned_cols=169  Identities=15%  Similarity=0.095  Sum_probs=126.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      |++++||++.|++. ..  +|+++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   74 (274)
T PRK13644          1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG   74 (274)
T ss_pred             CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence            47899999999532 12  6799999999999999999999999999999999997   99999 45553221       


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                        ...+. +.++..... ...++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++
T Consensus        75 ~~~~i~~-v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~  152 (274)
T PRK13644         75 IRKLVGI-VFQNPETQF-VGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILT  152 (274)
T ss_pred             HHhheEE-EEEChhhhc-ccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHH
Confidence              12343 455432111 1146666665443333332222234466778888775  35677899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.++..+.+++.+
T Consensus       153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~  181 (274)
T PRK13644        153 MEPECLIFDEVTSMLDPDSGIAVLERIKK  181 (274)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.97  E-value=6.5e-31  Score=229.08  Aligned_cols=174  Identities=16%  Similarity=0.149  Sum_probs=125.4

Q ss_pred             ceEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-
Q 025256           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-  148 (255)
                      ++|+++||++.|+...     ....+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++.... 
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            4699999999996310     01237799999999999999999999999999999999998   99999 45553211 


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (255)
                             ...+. ++++........+++.++....... .+.........+.++++.+++.   .+..+..||+||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv  158 (267)
T PRK15112         80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL  158 (267)
T ss_pred             CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence                   12333 4554321111123333333332221 1221111224567788888874   3456779999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  194 (267)
T PRK15112        159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998875

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.9e-31  Score=227.77  Aligned_cols=173  Identities=14%  Similarity=0.115  Sum_probs=127.8

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC---
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~---  147 (255)
                      .+++++++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|++...  +|++|+ .+++...   
T Consensus         9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~   84 (258)
T PRK14268          9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP   84 (258)
T ss_pred             cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence            367899999999998643    679999999999999999999999999999999998510  127998 4555321   


Q ss_pred             -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                             ....+. +.++.. ++.  .++.++..+.....+.........+.++++.+++.      .+..+..||+||+
T Consensus        85 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~  160 (258)
T PRK14268         85 DVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ  160 (258)
T ss_pred             cchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence                   112333 444432 222  46667665543333322111123356677777652      3456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus       161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  200 (258)
T PRK14268        161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL  200 (258)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.5e-31  Score=225.78  Aligned_cols=164  Identities=14%  Similarity=0.079  Sum_probs=125.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   73 (241)
T PRK14250          1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI   73 (241)
T ss_pred             CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence            45789999999997643    6799999999999999999999999999999999997   99999 4555321      


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~  222 (255)
                        +...+. ++++... +.  .++.++.......    .........++++.+++.   .+..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a  145 (241)
T PRK14250         74 DLRRKIGM-VFQQPHL-FE--GTVKDNIEYGPML----KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART  145 (241)
T ss_pred             HhhhcEEE-EecCchh-ch--hhHHHHHhcchhh----cCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence              112333 5555332 21  2444443321111    111234566788888885   356778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+..++.+.++|.+
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998875

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.97  E-value=3.8e-31  Score=230.84  Aligned_cols=165  Identities=15%  Similarity=0.159  Sum_probs=126.3

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------  148 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---------  148 (255)
                      .++++++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....         
T Consensus        26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            4679999998754    6799999999999999999999999999999999997   99999 46553211         


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                         ...+. +.++....  ..+++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        99 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294          99 LRRKKISM-VFQSFALL--PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             hhcCcEEE-EecCcccC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence               12343 55443222  2256666665543222322212234456788888875  3567789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+..++.+.++|.+
T Consensus       176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~  205 (269)
T cd03294         176 AVDPDILLMDEAFSALDPLIRREMQDELLR  205 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=6.6e-31  Score=243.40  Aligned_cols=178  Identities=19%  Similarity=0.203  Sum_probs=143.9

Q ss_pred             ccceEEEccceeecccc-------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC
Q 025256           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~-------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~  145 (255)
                      ..++++++||+|.|...       ...+.+++||||++.+||++||+|+||||||||+|+|+|++.   |++|. .+++.
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~  353 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ  353 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence            45789999999999841       124668999999999999999999999999999999999998   99999 56664


Q ss_pred             CC---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256          146 VK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       146 ~~---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (255)
                      ..         ......++++|.+.-.++.+++.+.+.......+. ........+.++++.+++.   .+.++.+||||
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG  433 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG  433 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence            31         01234567888887766667777666665544332 2222334577889999987   46889999999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+++||||+.+|++||+|||++.||+..+..+.++|.+.
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l  475 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL  475 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.97  E-value=1.2e-30  Score=221.53  Aligned_cols=171  Identities=19%  Similarity=0.183  Sum_probs=126.3

Q ss_pred             eEEEccceeecccc---ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccC--CC--CC-
Q 025256           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--VK-  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~---~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~--~~--~~-  147 (255)
                      |++++|+++.|+..   .....+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .++  +.  .. 
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence            47899999999631   011236799999999999999999999999999999999997   99999 454  21  11 


Q ss_pred             --C---------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256          148 --P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (255)
Q Consensus       148 --~---------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~  213 (255)
                        .         ...+. +.++... + ..+++.++..+.....+...........++++.+++..   +..+..||+||
T Consensus        78 ~~~~~~~~~~~~~~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~  154 (224)
T TIGR02324        78 QASPREVLEVRRKTIGY-VSQFLRV-I-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE  154 (224)
T ss_pred             hcCHHHHHHHHhcceEE-Eeccccc-C-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence              0         12333 5554332 1 22456555544322233322222345567888888753   45678999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus       155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (224)
T TIGR02324       155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE  194 (224)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.9e-31  Score=231.54  Aligned_cols=172  Identities=11%  Similarity=0.061  Sum_probs=129.3

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .++++||++.|++... ...+|+++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4889999999964210 1227799999999999999999999999999999999998   99999 4665321       


Q ss_pred             -----CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                           +...|. ++++.. .++.  .++.++..+.....++........+.++++.+++.   .+..+..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                 112344 555431 1221  35666665443333333222234567788888885   24677899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l  191 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSL  191 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998753

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2e-30  Score=218.99  Aligned_cols=165  Identities=16%  Similarity=0.093  Sum_probs=126.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----C
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----P  149 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~  149 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....     .
T Consensus        10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~   82 (214)
T PRK13543         10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR   82 (214)
T ss_pred             ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence            5799999999998643    6799999999999999999999999999999999997   99999 46653221     1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++...  ...+++.++........+   ........++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        83 ~i~~-~~q~~~~--~~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (214)
T PRK13543         83 FMAY-LGHLPGL--KADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA  156 (214)
T ss_pred             ceEE-eecCccc--ccCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence            1333 4443322  122466666544332222   11233456777877765  36677799999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+..++.+.+++.+
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~  182 (214)
T PRK13543        157 PLWLLDEPYANLDLEGITLVNRMISA  182 (214)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999864

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.97  E-value=5.6e-31  Score=224.44  Aligned_cols=163  Identities=13%  Similarity=0.114  Sum_probs=121.7

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            46899999998643    7799999999999999999999999999999999998   99999 4555321         


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc-C--CCCCCCCCCCccccchhhhhhhhc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l--~~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      ....+. ++++... + ..+++.++..+.....+.   ........+++.++ +  ..+.++..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~~---~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410        74 RAGIAY-VPQGREI-F-PRLTVEENLLTGLAALPR---RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             HhCeEE-eccCCcc-c-CCCcHHHHHHHHHHhcCc---chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            112333 4444332 2 224666655443222221   11223345555554 2  246777899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.+++.+.++|.+
T Consensus       148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.97  E-value=8.9e-31  Score=226.91  Aligned_cols=169  Identities=15%  Similarity=0.156  Sum_probs=128.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .+++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++....      
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            4689999999998643    6799999999999999999999999999999999997   99999 45553211      


Q ss_pred             ---------------CCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCC
Q 025256          149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF  209 (255)
Q Consensus       149 ---------------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~l  209 (255)
                                     ...+. +.++... + ..+++.++..+... ..+...........++++.+++..   +..+..|
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L  153 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTM-VFQHFNL-W-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL  153 (257)
T ss_pred             cccccccchHHHHHhhceEE-EecCccc-C-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence                           12333 4554332 1 12566666544221 122221122345677888888863   4567899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  198 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL  198 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998753

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.1e-30  Score=226.47  Aligned_cols=172  Identities=12%  Similarity=0.121  Sum_probs=125.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~-----  147 (255)
                      .+++++|+++.|++..    +|+++||++++|++++|+||||||||||+++|+|++...  +|++|+ .+++...     
T Consensus         3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~   78 (258)
T PRK14241          3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV   78 (258)
T ss_pred             ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence            3689999999998643    779999999999999999999999999999999998510  126998 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                           ....+. +.++....  ..+++.++........+. ........+.++++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (258)
T PRK14241         79 DPVAVRRTIGM-VFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ  155 (258)
T ss_pred             ChHHHhcceEE-EccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence                 112333 44443222  225666666543322221 1111123456677777652      35667799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL  194 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=224.71  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=126.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCCC---
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVKP---  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~~---  148 (255)
                      .++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++..  ..|++|+ .+++....   
T Consensus         4 ~~~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGDFQ----ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECCee----eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            36899999999997643    67999999999999999999999999999999998631  0147898 45553211   


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                             ...+. +.++.. ++.  .++.++..+.....+.. .......+.++++.+++.      .+..+..||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ  155 (253)
T ss_pred             cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence                   12333 555433 222  36666665443333321 111233456677777763      2456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.97  E-value=1.1e-30  Score=218.61  Aligned_cols=160  Identities=16%  Similarity=0.103  Sum_probs=122.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------P  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------~  149 (255)
                      ++++||++.|++..    +++++||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++....       .
T Consensus         1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            46899999998643    6799999999999999999999999999999999997   99999 45553211       1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..+. +.++.. +. ...++.++.....     . ......+.++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~-----~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  144 (201)
T cd03231          74 GLLY-LGHAPG-IK-TTLSVLENLRFWH-----A-DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR  144 (201)
T ss_pred             heEE-eccccc-cC-CCcCHHHHHHhhc-----c-cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2232 333322 11 1245555443321     1 11345567788888776  35667799999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+..++.+.++|.+
T Consensus       145 ~llllDEPt~~LD~~~~~~l~~~l~~  170 (201)
T cd03231         145 PLWILDEPTTALDKAGVARFAEAMAG  170 (201)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999865

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=1.5e-30  Score=207.07  Aligned_cols=173  Identities=17%  Similarity=0.114  Sum_probs=139.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|++++++|..+.....+.+|++|+|.|++||.++|+||||||||||+-+++|+..   |++|+ ++.++..       
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~   81 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA   81 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence            379999999999887677789999999999999999999999999999999999998   99999 4444321       


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC--CCCCCCCccccchhhhh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~qrv~~a  220 (255)
                           ....|. +++.-..++  .++..||........|-............++.++++..  -++.+||||++|||++|
T Consensus        82 rA~~R~~~vGf-VFQSF~Lip--~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181          82 RAALRARHVGF-VFQSFHLIP--NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             HHHhhccceeE-EEEeeeccc--cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence                 233454 444333233  37888888776666663222334456789999999854  56789999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++..|+||+.||||..||...-+++.+++...
T Consensus       159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l  192 (228)
T COG4181         159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL  192 (228)
T ss_pred             HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999998653

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.97  E-value=1.5e-30  Score=224.90  Aligned_cols=170  Identities=14%  Similarity=0.161  Sum_probs=124.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-----C--
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----K--  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-----~--  147 (255)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++..     .  
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            4699999999998643    6799999999999999999999999999999999998   99999 455432     1  


Q ss_pred             -C---------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256          148 -P---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~---------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (255)
                       .         ...+. +.++........+++.++.......... ........+.++++.+++.   .+..+..||+||
T Consensus        75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~  153 (253)
T TIGR02323        75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM  153 (253)
T ss_pred             CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence             0         11233 4554321111112333333221111111 1111234567788888874   245677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  193 (253)
T TIGR02323       154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  193 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.97  E-value=1.4e-30  Score=227.10  Aligned_cols=175  Identities=17%  Similarity=0.132  Sum_probs=126.6

Q ss_pred             cceEEEccceeeccccc-----cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~-----~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-  147 (255)
                      |++|+++||++.|++..     ....+++|+||++++|++++|+||||||||||+++|+|++.   |++|+ .+++... 
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~~~   77 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEPLA   77 (268)
T ss_pred             CceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecc
Confidence            56899999999997310     01126799999999999999999999999999999999997   99999 4555321 


Q ss_pred             ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (255)
                                ....+. +.++.........++.++..+.... .+.........+.++++.+++.   .+..+..||+||
T Consensus        78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge  156 (268)
T PRK10419         78 KLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQ  156 (268)
T ss_pred             ccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHH
Confidence                      112333 5555321111123444443322111 1211111223467788888875   356778999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=228.04  Aligned_cols=170  Identities=13%  Similarity=0.159  Sum_probs=128.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++++++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   80 (271)
T PRK13632          6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE   80 (271)
T ss_pred             eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence            579999999999631112  6799999999999999999999999999999999997   99999 4555321       


Q ss_pred             -CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                       +...+. +.++.. .+.  ..++.++........++........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral  157 (271)
T PRK13632         81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL  157 (271)
T ss_pred             HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence             112333 555531 111  246666665433222222111223456778888775  4667789999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+..++.+.++|.+
T Consensus       158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-30  Score=229.24  Aligned_cols=173  Identities=15%  Similarity=0.132  Sum_probs=128.3

Q ss_pred             ceEEEccceeecccccc--ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----
Q 025256           76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~--~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----  148 (255)
                      ++++++|+++.|++...  ...+|+++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++....    
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence            57999999999974210  1227799999999999999999999999999999999997   99999 45553221    


Q ss_pred             -----CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 -----~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                           ...|. ++++.. .+..  .++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|
T Consensus        80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence                 12333 455432 1111  24445444433333332222234567788888775  3567789999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  190 (280)
T PRK13633        157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL  190 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-30  Score=231.67  Aligned_cols=173  Identities=14%  Similarity=0.077  Sum_probs=129.3

Q ss_pred             cceEEEccceeeccccc-cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~-~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .++|+++||++.|+... ....+|+++||+|++|++++|+|+||||||||+++|+|++.   |++|+ .+++...     
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence            36899999999997421 11237799999999999999999999999999999999998   99999 4554211     


Q ss_pred             -------------------CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCC
Q 025256          148 -------------------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV  204 (255)
Q Consensus       148 -------------------~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~  204 (255)
                                         +...+. ++++.. .+..  .++.++..+.....+.........+.++++.+++.   .+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  172 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER  172 (320)
T ss_pred             cccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence                               112344 555532 2222  35666554433222322222233456788888885   356


Q ss_pred             CCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~  221 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD  221 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            6779999999999999999999999999999999999999999999865

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2.6e-30  Score=216.06  Aligned_cols=162  Identities=15%  Similarity=0.099  Sum_probs=124.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      |++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~   73 (200)
T PRK13540          1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ   73 (200)
T ss_pred             CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence            478999999998643    6799999999999999999999999999999999997   99999 46654321       


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. +.++... + ..+++.++..+...   ..  .......++++.+++..  +..+..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~~-~-~~~tv~~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  145 (200)
T PRK13540         74 KQLCF-VGHRSGI-N-PYLTLRENCLYDIH---FS--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK  145 (200)
T ss_pred             hheEE-ecccccc-C-cCCCHHHHHHHHHh---cC--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            12333 4433321 1 22566665543211   11  12235677888777753  455678999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.++|.+
T Consensus       146 p~~lilDEP~~~LD~~~~~~l~~~l~~  172 (200)
T PRK13540        146 AKLWLLDEPLVALDELSLLTIITKIQE  172 (200)
T ss_pred             CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.7e-31  Score=226.01  Aligned_cols=166  Identities=15%  Similarity=0.139  Sum_probs=124.4

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...         
T Consensus         1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            46889999998643    6799999999999999999999999999999999997   99999 4555321         


Q ss_pred             ------------CCCeeEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCcc
Q 025256          148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG  212 (255)
Q Consensus       148 ------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G  212 (255)
                                  ....+. +.++....  ...++.++...... ..+.........+.++++.+++.  .+..+..||+|
T Consensus        74 ~~~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G  150 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGM-VFQSFNLF--PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG  150 (252)
T ss_pred             ccccchhHHHHHhhCeEE-EecCcccC--CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence                        112333 44443322  22466666544221 12222111223456778887775  34566799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=224.77  Aligned_cols=169  Identities=14%  Similarity=0.138  Sum_probs=126.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .++++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|++.   |     ++|+ .+++... 
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          5 EAIIETENLNLFYTDFK----ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             CceEEEeeeEEEeCCce----eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence            35799999999998643    6799999999999999999999999999999999996   5     4888 4555321 


Q ss_pred             ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (255)
                               +...+. +.++... +.  .++.++..+.....+.... .......+.++.+++.      .+..+..||+
T Consensus        78 ~~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  153 (254)
T PRK14273         78 SNNFDILELRRKIGM-VFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG  153 (254)
T ss_pred             cccccHHHHhhceEE-Eeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence                     112333 5555432 21  5777766554322222111 1123456667766652      4567789999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (254)
T PRK14273        154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL  196 (254)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-30  Score=228.48  Aligned_cols=171  Identities=15%  Similarity=0.085  Sum_probs=126.6

Q ss_pred             eEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .++++||++.|++... ...+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK   78 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence            3889999999975210 0126799999999999999999999999999999999997   99999 45553211      


Q ss_pred             ------CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhh
Q 025256          149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 ------~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (255)
                            ...+. +.++.. .++.  .++.++..+.....+.........+.++++.+++.   .+..+..||+||+||++
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         79 DIKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             CHHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                  12333 555531 2221  36666665433333322111223456777887775   25677899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK  190 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=225.95  Aligned_cols=167  Identities=17%  Similarity=0.187  Sum_probs=125.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++..    +|+++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGTKR----ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECCEE----EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            689999999998643    6799999999999999999999999999999999997   99998 4555321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHH----hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~----~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                      ....+. +.++....  ..+++.++..+...    .++.........+..+++.+++.  .+..+..||+||+||+++|+
T Consensus        75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  151 (255)
T PRK11231         75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM  151 (255)
T ss_pred             hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence            112343 45443321  22455555433210    01111111233456777777775  36677899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+.+++.+.++|.+
T Consensus       152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  183 (255)
T PRK11231        152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRE  183 (255)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999865

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.97  E-value=9e-31  Score=236.51  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=126.6

Q ss_pred             eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------------CCCe
Q 025256           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDV  151 (255)
Q Consensus        85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------------~~~~  151 (255)
                      |.|++..    +++++||+|++||+++|+||||||||||+++|+|++.   |++|+ .++|...            +...
T Consensus         1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i   73 (363)
T TIGR01186         1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI   73 (363)
T ss_pred             CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence            4566644    7899999999999999999999999999999999998   99999 4666321            1234


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      +. +.++... + +++++.+|..+.....+.........+.++++.+++.  .+.++..|||||+||+++||||+.+|++
T Consensus        74 ~~-v~Q~~~l-~-~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i  150 (363)
T TIGR01186        74 GM-VFQQFAL-F-PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI  150 (363)
T ss_pred             EE-EECCCcC-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            54 5544332 2 2368888887765555543333345677888888886  4667889999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||||++||+..++++.+++.+.
T Consensus       151 LLlDEP~saLD~~~r~~l~~~l~~l  175 (363)
T TIGR01186       151 LLMDEAFSALDPLIRDSMQDELKKL  175 (363)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998653

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.3e-30  Score=226.81  Aligned_cols=178  Identities=16%  Similarity=0.161  Sum_probs=135.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQV-------  146 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~-------  146 (255)
                      +++++||+..|......+.+++||||++++||++||+|.|||||||+.+.|+|++..  ..-.+|+ .|+++.       
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            378999999997654456688999999999999999999999999999999999941  0113566 466641       


Q ss_pred             ----CCCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCC-CCCCcHHHHHHHHHhhcCCC-----CCCCCCCCccccc
Q 025256          147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGD  215 (255)
Q Consensus       147 ----~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~-~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~q  215 (255)
                          .+.....+|++|...-.++-+++.+........ .+. ..........++|+.+++..     +.|+.+|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                234445558888765444334443333332222 122 12234557788999999873     6788999999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||.||.|++.+|++||.||||++||...+.++.++|.+.
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l  199 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL  199 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999864

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=225.50  Aligned_cols=172  Identities=15%  Similarity=0.108  Sum_probs=126.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      .++|+++||++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++..  .|++|+ .+++...    
T Consensus        17 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         17 EIKMRARDVSVFYGEKQ----ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CceEEEEeEEEEECCEE----EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            45799999999998643    679999999999999999999999999999999998510  138998 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--CCCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (255)
                            +...+. +.++... +.  .++.++..+.....+..  .......+..+++.+++.      .+..+..||+||
T Consensus        93 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq  168 (267)
T PRK14235         93 LDVVELRARVGM-VFQKPNP-FP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ  168 (267)
T ss_pred             cchHHHhhceEE-EecCCCC-CC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence                  112343 4444322 22  25666665433222321  111123456778877774      245678999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l  209 (267)
T PRK14235        169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL  209 (267)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.97  E-value=1.2e-30  Score=219.54  Aligned_cols=164  Identities=14%  Similarity=0.112  Sum_probs=122.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++..      .++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            46889999997532      39999999999999999999999999999999997   99999 4555321      112


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +.++....  ..+++.++..+...............+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~  148 (211)
T cd03298          72 VSM-LFQENNLF--AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP  148 (211)
T ss_pred             EEE-EecccccC--CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            343 55554322  2245655554321110001112234567788888775  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+..++.+.++|.+
T Consensus       149 llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298         149 VLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=5.5e-31  Score=211.41  Aligned_cols=166  Identities=14%  Similarity=0.159  Sum_probs=126.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV  151 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~  151 (255)
                      ++.+++|.+.|+...      -..+++|..||+++|+|||||||||||++|+|.+.   |.+|+ .+++...    +...
T Consensus         1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R   71 (231)
T COG3840           1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER   71 (231)
T ss_pred             CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence            367889999998854      67889999999999999999999999999999997   99999 4666432    1122


Q ss_pred             -eEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          152 -ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       152 -g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                       ..++++++.. + .++++.+|+..... -++ ....+.+.+..++..+++.  .+..+.+|||||||||++||+++.+.
T Consensus        72 PVSmlFQEnNL-F-aHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~  148 (231)
T COG3840          72 PVSMLFQENNL-F-AHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ  148 (231)
T ss_pred             Chhhhhhcccc-c-hhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence             2223444332 2 23666655433110 111 1233556677888888886  46677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+++||||+.|||.-+.++..++...
T Consensus       149 PilLLDEPFsALdP~LR~eMl~Lv~~l  175 (231)
T COG3840         149 PILLLDEPFSALDPALRAEMLALVSQL  175 (231)
T ss_pred             CeEEecCchhhcCHHHHHHHHHHHHHH
Confidence            999999999999999999999988654

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2e-30  Score=223.72  Aligned_cols=171  Identities=15%  Similarity=0.176  Sum_probs=125.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      |++|+++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++...  .|++|+ .+++...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~   76 (250)
T PRK14262          1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ   76 (250)
T ss_pred             CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence            45799999999998643    679999999999999999999999999999999998510  027898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            ....+. +.++... +.  .++.++..+.....+.. .......+.+.++.+++.      .+..+..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         77 LDVTEYRKKVGM-VFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ  152 (250)
T ss_pred             hhHHHhhhhEEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence                  112333 4554332 21  46666665433222221 111223345667766663      3456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|+++|+||||++||+.++..+.++|.+
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE  191 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.2e-30  Score=227.09  Aligned_cols=169  Identities=18%  Similarity=0.110  Sum_probs=125.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      -++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         9 ~~~l~i~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575          9 DTTFALRNVSFRVPGRT----LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK   81 (265)
T ss_pred             CceEEEeeEEEEECCEE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence            35799999999997643    7799999999999999999999999999999999997   99999 4555321      


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cC---CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                        ....+. +.++....+  .+++.++..+.... .+   .........+.++++.+++.  .+.++..||+||+||+++
T Consensus        82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  158 (265)
T PRK10575         82 AFARKVAY-LPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI  158 (265)
T ss_pred             HHhhheEE-eccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence              112333 444422211  24555544332110 01   11111233456778888775  356778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.97  E-value=3.6e-30  Score=222.78  Aligned_cols=166  Identities=14%  Similarity=0.157  Sum_probs=124.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcc-ccCCCCCC---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVKP---  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~~~~~~---  148 (255)
                      +++++||++.| +..    +++++||++++|++++|+||||||||||+++|+|+++   |    ++|+ .+++....   
T Consensus         4 ~l~~~~l~~~~-~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          4 QIELRNIALQA-AQP----LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEEeCeEEEe-ccc----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence            68999999999 333    6799999999999999999999999999999999997   7    8998 45553221   


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCccccchhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~qrv~~a  220 (255)
                         ...+. ++++....+....++.++........+..  .....+.++++.+++..     +..+..||+||+||+++|
T Consensus        76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la  152 (254)
T PRK10418         76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA  152 (254)
T ss_pred             cccceEEE-EecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence               12333 55554211111223333332222222321  22355678888888764     567789999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  185 (254)
T PRK10418        153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES  185 (254)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998865

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.9e-30  Score=222.88  Aligned_cols=168  Identities=14%  Similarity=0.089  Sum_probs=126.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          2 KIKMESKNLNLWYGEKQ----ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             ccEEEEEEeEEEECCee----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence            36899999999997643    6799999999999999999999999999999999985   4     7898 4555321 


Q ss_pred             ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (255)
                               ....+. +.++... +.  .++.++..+.....+.. .........++++.+++.      .+..+..||+
T Consensus        75 ~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  150 (251)
T PRK14270         75 DKDVDVVELRKRVGM-VFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG  150 (251)
T ss_pred             cccccHHHHHhheEE-EecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence                     112343 5555432 21  46666665433333321 111123445677777653      3566789999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus       151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.97  E-value=2.6e-30  Score=223.36  Aligned_cols=160  Identities=16%  Similarity=0.122  Sum_probs=121.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|++ +++.   ...+. 
T Consensus         3 ~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~-   71 (251)
T PRK09544          3 SLVSLENVSVSFGQRR----VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY-   71 (251)
T ss_pred             cEEEEeceEEEECCce----EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE-
Confidence            4799999999998643    6799999999999999999999999999999999997   999984 4431   23443 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      +.++... +. .++  .....   ...+........+..+++.+++..  +.++..||+||+||+++|++++.+|+++|+
T Consensus        72 v~q~~~~-~~-~l~--~~~~~---~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL  144 (251)
T PRK09544         72 VPQKLYL-DT-TLP--LTVNR---FLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL  144 (251)
T ss_pred             ecccccc-cc-ccC--hhHHH---HHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            4544321 11 011  01111   111111122345677888887763  566779999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHHh
Q 025256          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 DEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.+++.+.++|.+
T Consensus       145 DEPt~~LD~~~~~~l~~~L~~  165 (251)
T PRK09544        145 DEPTQGVDVNGQVALYDLIDQ  165 (251)
T ss_pred             eCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999998864

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-30  Score=227.44  Aligned_cols=169  Identities=16%  Similarity=0.143  Sum_probs=127.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++||++.|++. ..  +++++||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            47899999999642 12  6799999999999999999999999999999999997   99999 46553221       


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. ++++.. .+..  .++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara  151 (275)
T PRK13639         75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI  151 (275)
T ss_pred             HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence               12333 556532 1221  46666665433222322112234567788888875  456778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|+++|+||||++||+.++..+.+++.+.
T Consensus       152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  183 (275)
T PRK13639        152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL  183 (275)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-30  Score=225.62  Aligned_cols=171  Identities=13%  Similarity=0.138  Sum_probs=126.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      .++++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....     
T Consensus         5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            35799999999997521  126799999999999999999999999999999999997   99999 46553221     


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. +.++.. .++  ..++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|++
T Consensus        80 ~~~~~i~~-v~q~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  156 (269)
T PRK13648         80 KLRKHIGI-VFQNPDNQFV--GSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV  156 (269)
T ss_pred             HHHhheeE-EEeChHHhcc--cccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence               12343 555432 111  123344443332222222112223456778888775  356677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+..++.+.+++.+
T Consensus       157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        157 LALNPSVIILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.2e-30  Score=223.83  Aligned_cols=172  Identities=12%  Similarity=0.069  Sum_probs=126.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~----  147 (255)
                      ..+++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|++.  ...|++|+ .+++...    
T Consensus        11 ~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~   86 (260)
T PRK10744         11 PSKIQVRNLNFYYGKFH----ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK   86 (260)
T ss_pred             CceEEEEEEEEEeCCeE----EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence            45799999999998633    6799999999999999999999999999999999984  11147898 4555221    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            +...+. +.++... +.  .++.++..+..... +...........++++.+++.      .+..+..||+||+
T Consensus        87 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  162 (260)
T PRK10744         87 QDIALLRAKVGM-VFQKPTP-FP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ  162 (260)
T ss_pred             cchHHHhcceEE-EecCCcc-Cc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence                  112333 4554332 21  45656554432222 222111223456777877763      3556789999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+.+++.+.+++.+.
T Consensus       163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  202 (260)
T PRK10744        163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL  202 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-30  Score=223.71  Aligned_cols=169  Identities=16%  Similarity=0.137  Sum_probs=125.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-----  149 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~-----  149 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++.....     
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            3699999999997643    7799999999999999999999999999999999997   99999 455532110     


Q ss_pred             --CeeE-EEecCCCCCcCccCCcccChHHHHHh-------cCCCC------C--CcHHHHHHHHHhhcCC--CCCCCCCC
Q 025256          150 --DVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR-------RGAPW------T--FNPLLLLNCLKNLRNQ--GSVYAPSF  209 (255)
Q Consensus       150 --~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~-------~g~~~------~--~~~~~~~~~l~~l~l~--~~~~~~~l  209 (255)
                        ..+. +++++... + ..+++.++..+....       .++..      .  .......++++.+++.  .+.++..|
T Consensus        77 ~~~~~i~~~~q~~~~-~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~L  154 (255)
T PRK11300         77 IARMGVVRTFQHVRL-F-REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNL  154 (255)
T ss_pred             HHhcCeEEeccCccc-C-CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhC
Confidence              1111 23444322 1 235666665543210       01100      0  1113456677777775  36677899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 S~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~  198 (255)
T PRK11300        155 AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE  198 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999865

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.97  E-value=2.5e-30  Score=222.03  Aligned_cols=167  Identities=19%  Similarity=0.072  Sum_probs=121.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~------  148 (255)
                      |+++||++.|++..    +++++||+|++|++++|+||||||||||+|+|+|++  .   |++|+ .+++....      
T Consensus         1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978         1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence            46899999998643    679999999999999999999999999999999994  4   89999 45553211      


Q ss_pred             -CC--eeEEEecCCCCCcCccCCcccChHHHHHhc-CCC-----C-CCcHHHHHHHHHhhcCC---CCCCCC-CCCcccc
Q 025256          149 -PD--VATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAP-----W-TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG  214 (255)
Q Consensus       149 -~~--~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~~-----~-~~~~~~~~~~l~~l~l~---~~~~~~-~lS~G~~  214 (255)
                       ..  .+. +.++....  ..+++.++........ ...     . ......+.++++.+++.   .+..+. .||+||+
T Consensus        74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK  150 (243)
T ss_pred             hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence             11  222 44443221  2245555554432211 110     0 01123456788888875   234555 4999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  190 (243)
T TIGR01978       151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL  190 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.97  E-value=3.2e-30  Score=218.87  Aligned_cols=162  Identities=20%  Similarity=0.236  Sum_probs=124.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----CCee
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA  152 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----~~~g  152 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....    ...+
T Consensus         1 l~l~~v~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGKQT----AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG   73 (223)
T ss_pred             CEEEeEEEEECCEE----EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence            46889999998643    6799999999999999999999999999999999997   99999 45553211    1233


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                      . +.++....  ..+++.++........+    .......++++.+++.  .+..+..||+||+||+++|++++.+|+++
T Consensus        74 ~-~~q~~~~~--~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll  146 (223)
T TIGR03740        74 S-LIESPPLY--ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL  146 (223)
T ss_pred             E-EcCCCCcc--ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3 44433221  12466666544332222    1234567788888876  35567799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+.+++.+.+++.+
T Consensus       147 llDEP~~~LD~~~~~~l~~~L~~  169 (223)
T TIGR03740       147 ILDEPTNGLDPIGIQELRELIRS  169 (223)
T ss_pred             EECCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.97  E-value=3e-30  Score=217.61  Aligned_cols=165  Identities=16%  Similarity=0.146  Sum_probs=123.1

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      ++++||++.|+.      .+.++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            368899999974      3479999999999999999999999999999999998   99999 4655321      112


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +.++....  ..+++.++..+.................++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-v~q~~~~~--~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  148 (213)
T TIGR01277        72 VSM-LFQENNLF--AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP  148 (213)
T ss_pred             eEE-EeccCccC--CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            333 45543322  2246666654322111111111233456788888775  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+||||++||+.+++.+.++|.+.
T Consensus       149 llllDEPt~~LD~~~~~~~~~~l~~~  174 (213)
T TIGR01277       149 ILLLDEPFSALDPLLREEMLALVKQL  174 (213)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999998753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.5e-30  Score=249.32  Aligned_cols=177  Identities=16%  Similarity=0.158  Sum_probs=133.7

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~-----  147 (255)
                      .+++|+++||++.|+.......+++++||++++|+++||+||||||||||+|+|+|++.   |++|++ +++...     
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~   85 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR   85 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence            46789999999999642112237799999999999999999999999999999999997   899984 444100     


Q ss_pred             ----------------C-CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC-----CCC
Q 025256          148 ----------------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSV  204 (255)
Q Consensus       148 ----------------~-~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~-----~~~  204 (255)
                                      + ...|. +.++........+++.++..+.... .++........+.++++.+++.     .+.
T Consensus        86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  164 (623)
T PRK10261         86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR  164 (623)
T ss_pred             cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence                            0 13444 5555311112235777777654432 2332222234567889999884     357


Q ss_pred             CCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|||||+|||++|+||+.+|++||+||||++||+..++++.+++.+.
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l  214 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL  214 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999998763

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.2e-30  Score=222.93  Aligned_cols=172  Identities=13%  Similarity=0.108  Sum_probs=126.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCCC---
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVKP---  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~~---  148 (255)
                      .++++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|++.  ..+|++|+ .+++....   
T Consensus        10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~   85 (259)
T PRK14274         10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK   85 (259)
T ss_pred             CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence            46899999999998643    6799999999999999999999999999999999984  11126898 45553211   


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                             ...+. ++++... +.  .++.++..+.....+... ......+.++++.+++.      .+..+..||+||+
T Consensus        86 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         86 VDLVELRKNIGM-VFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             cCHHHHhhceEE-EecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence                   12333 5555432 22  256666544332222211 11123345667777663      3456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  201 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL  201 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.6e-30  Score=222.29  Aligned_cols=170  Identities=15%  Similarity=0.135  Sum_probs=125.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcc-ccCCCCC----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~~~~~----  147 (255)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+... .|   ++|+ .+++...    
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~p~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14239          4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDL-NPEVTITGSIVYNGHNIYSPR   78 (252)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccccc-CCCCCccceEEECCEECcCcc
Confidence            4799999999998643    67999999999999999999999999999999998420 15   5898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            +...+. ++++... +.  .++.++..+.....+... ......+..+++.+++.      .+..+..||+||+
T Consensus        79 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         79 TDTVDLRKEIGM-VFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             cchHhhhhcEEE-EecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence                  112333 5555432 22  466676654433333221 11123445667777653      3466779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL  194 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.5e-30  Score=222.85  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=122.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      |++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....     
T Consensus         3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence            46899999999997643    7799999999999999999999999999999999997   99999 46653211     


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhh-cCC--CCCCCCCCCccccchhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                          ...+. +.++... + ..+++.++........  ........+..+++.+ ++.  .+.++..||+||+||+++|+
T Consensus        76 ~~~~~~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (237)
T PRK11614         76 KIMREAVAI-VPEGRRV-F-SRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR  150 (237)
T ss_pred             HHHHhCEEE-eccCccc-C-CCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence                12333 4444322 2 1245555554321111  1111112334445554 232  34567799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|+++|+||||++||+..++.+.+++.+
T Consensus       151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  182 (237)
T PRK11614        151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ  182 (237)
T ss_pred             HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=245.14  Aligned_cols=168  Identities=18%  Similarity=0.166  Sum_probs=127.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++...       
T Consensus         3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4799999999998643    6799999999999999999999999999999999997   99999 4665321       


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHHhc---C-CCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~---g-~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~  219 (255)
                        ....+. +.++....  ..+++.++..+.....   + .........+.++++.+++..  +.++..||+||+||+++
T Consensus        76 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  152 (501)
T PRK10762         76 SQEAGIGI-IHQELNLI--PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI  152 (501)
T ss_pred             HHhCCEEE-EEcchhcc--CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence              112344 55553221  2356666554422111   1 001111234567888888763  56678999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++||+||||++||+..++++.+++.+
T Consensus       153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (501)
T PRK10762        153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE  186 (501)
T ss_pred             HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998875

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.9e-30  Score=227.44  Aligned_cols=172  Identities=12%  Similarity=0.036  Sum_probs=126.2

Q ss_pred             ceEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ..|+++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...      
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   81 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK   81 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence            45899999999975321 1226799999999999999999999999999999999997   99999 4555321      


Q ss_pred             -------CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccch
Q 025256          148 -------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -------~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qr  216 (255)
                             +...+. +.++.. ....  .++.++..+.....+.........+..+++.+++.   .+..+..||+||+||
T Consensus        82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr  158 (289)
T PRK13645         82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR  158 (289)
T ss_pred             cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence                   112333 455431 1111  35556554433222221111123455677877773   356778999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  195 (289)
T PRK13645        159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER  195 (289)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998865

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.3e-30  Score=234.02  Aligned_cols=162  Identities=14%  Similarity=0.080  Sum_probs=126.2

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC-----CCC-------
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VKP-------  148 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~-----~~~-------  148 (255)
                      ++.+.|+...    +++|+||+|++|++++|+||||||||||+++|+|++.   |++|+ .++++     ...       
T Consensus        29 ~~~~~~g~~~----~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~  101 (382)
T TIGR03415        29 EILDETGLVV----GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR  101 (382)
T ss_pred             HHHHhhCCEE----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence            4555665543    7899999999999999999999999999999999998   99999 46652     110       


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...+. ++++....  +.+++.+|..+.....+...........++++.+++.  .+.++.+||+||+||+++|++
T Consensus       102 ~~r~~~i~~-vfQ~~~l~--p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA  178 (382)
T TIGR03415       102 RLRTHRVSM-VFQKFALM--PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA  178 (382)
T ss_pred             HHhcCCEEE-EECCCcCC--CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence                13444 55544322  2367788877655444443333345667888988886  366778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|+|||+||||++||+..+.++.++|.+
T Consensus       179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~  209 (382)
T TIGR03415       179 FAMDADILLMDEPFSALDPLIRTQLQDELLE  209 (382)
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.97  E-value=2.1e-30  Score=214.86  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=114.5

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----------CCeeEEEecCCC-CCc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----------PDVATVLPMDGF-HLY  163 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----------~~~g~~i~~d~~-~~~  163 (255)
                      +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....          ...+. +.++.. .++
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~   82 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF   82 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence            6799999999999999999999999999999999997   99999 45553211          12333 455432 122


Q ss_pred             CccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       164 ~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      .  .++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+++|+||||++||+
T Consensus        83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            1  46666665433222222111223456777877775  4567789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 025256          242 GVWKDVSSMFDE  253 (255)
Q Consensus       242 ~~~~~l~~ll~~  253 (255)
                      ..++.+.++|.+
T Consensus       161 ~~~~~~~~~l~~  172 (190)
T TIGR01166       161 AGREQMLAILRR  172 (190)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.9e-30  Score=244.83  Aligned_cols=169  Identities=17%  Similarity=0.165  Sum_probs=128.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~----  147 (255)
                      +++++++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |  ++|+ .+++...    
T Consensus         3 ~~~l~~~nl~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~   75 (506)
T PRK13549          3 EYLLEMKNITKTFGGVK----ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN   75 (506)
T ss_pred             CceEEEeeeEEEeCCeE----eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence            35799999999998643    7799999999999999999999999999999999995   5  7999 4555321    


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--C-CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv  217 (255)
                           +...+. ++++... + ..+++.++..+.....  + .........+.++++.+++.  .+.++..||+||+||+
T Consensus        76 ~~~~~~~~i~~-v~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  152 (506)
T PRK13549         76 IRDTERAGIAI-IHQELAL-V-KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV  152 (506)
T ss_pred             HHHHHHCCeEE-EEecccc-C-CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence                 122444 5555332 1 2356666554422111  1 11111223467788888875  3567789999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++|+.+|++||+||||++||+..+.++.++|.+
T Consensus       153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (506)
T PRK13549        153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD  188 (506)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.1e-30  Score=221.07  Aligned_cols=169  Identities=14%  Similarity=0.133  Sum_probs=123.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      |++++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence            46799999999998643    6799999999999999999999999999999999985   5     4888 4554221 


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (255)
                              +...+. +.++... +.  .++.++..+.....+... ......+.+.++.+++.      .+..+..||+|
T Consensus        74 ~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  149 (249)
T PRK14253         74 GNIDVADLRIKVGM-VFQKPNP-FP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG  149 (249)
T ss_pred             cccchHHHHhheeE-EecCCCc-Cc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence                    112333 4444332 21  455565544322222211 11122345566666542      24566799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  191 (249)
T PRK14253        150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL  191 (249)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.7e-30  Score=220.97  Aligned_cols=171  Identities=17%  Similarity=0.120  Sum_probs=125.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCCC----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVKP----  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~~----  148 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+.....|  ++|+ .+++....    
T Consensus         2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            5789999999998643    67999999999999999999999999999999997310013  4898 46653221    


Q ss_pred             ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                            ...+. ++++... +.  .++.++..+.....+... ......+.++++.+++.      .+..+..||+||+|
T Consensus        78 ~~~~~~~~i~~-v~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  153 (250)
T PRK14245         78 QVDELRKNVGM-VFQRPNP-FP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ  153 (250)
T ss_pred             cHHHHhhheEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence                  12333 5555432 22  366666654332222211 11223456777777763      24566799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14245        154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL  192 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999763

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.97  E-value=1.7e-30  Score=220.86  Aligned_cols=162  Identities=15%  Similarity=0.115  Sum_probs=122.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEe
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (255)
                      +.++++++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.....     ..
T Consensus        23 l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~-----~~   90 (224)
T cd03220          23 LGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSL-----LG   90 (224)
T ss_pred             hhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchh-----hc
Confidence            77899999998854    7799999999999999999999999999999999997   88988 355432110     00


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                       .+.. ....+++.++........+...........++++.+++..  +..+..||+||+||+++|++++.+|+++|+||
T Consensus        91 -~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  168 (224)
T cd03220          91 -LGGG-FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE  168 (224)
T ss_pred             -cccc-CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence             0111 1123566666655433333221112234566777777653  56678999999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHh
Q 025256          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++||+.+++.+.+++.+
T Consensus       169 P~~gLD~~~~~~~~~~l~~  187 (224)
T cd03220         169 VLAVGDAAFQEKCQRRLRE  187 (224)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999999999999998875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.3e-30  Score=220.06  Aligned_cols=164  Identities=16%  Similarity=0.204  Sum_probs=122.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~  149 (255)
                      +++++||++.|++.      ..++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++....      .
T Consensus         1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   71 (232)
T PRK10771          1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR   71 (232)
T ss_pred             CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence            47899999999752      248999999999999999999999999999999997   99999 46653211      1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ..+. +.++... + ..+++.++..+.... +.. .......+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        72 ~i~~-~~q~~~~-~-~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  147 (232)
T PRK10771         72 PVSM-LFQENNL-F-SHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE  147 (232)
T ss_pred             cEEE-Eeccccc-c-cCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            2333 4444322 2 124555554332111 111 111234467788888775  3567779999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.+++.+
T Consensus       148 p~lllLDEP~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771        148 QPILLLDEPFSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998875

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.97  E-value=3.8e-30  Score=223.55  Aligned_cols=169  Identities=16%  Similarity=0.136  Sum_probs=126.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---cc-ccCCCCCC---
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVKP---  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~~~~~~---  148 (255)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |+.   |+ .++|....   
T Consensus         3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~   75 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG   75 (262)
T ss_pred             cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence            5799999999998643    6799999999999999999999999999999999996   764   77 45653221   


Q ss_pred             ----------CCeeEEEecCCCCCcCccCCcccChHHHHHh--------cCCCCCCcHHHHHHHHHhhcCC--CCCCCCC
Q 025256          149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS  208 (255)
Q Consensus       149 ----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~  208 (255)
                                ...+. ++++....  ..+++.++.......        .+.........+.++++.+++.  .+..+..
T Consensus        76 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  152 (262)
T PRK09984         76 RLARDIRKSRANTGY-IFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST  152 (262)
T ss_pred             ccchhHHHHHhheEE-Eccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence                      11333 45443321  235666655432110        0111111233467788888875  3567779


Q ss_pred             CCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  198 (262)
T PRK09984        153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI  198 (262)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.3e-30  Score=220.64  Aligned_cols=171  Identities=15%  Similarity=0.134  Sum_probs=124.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      |..++++||++.|++..    +++|+||+|++||+++|+||||||||||+++|+|+++..  .|++|+ .+++...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~   76 (250)
T PRK14240          1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD   76 (250)
T ss_pred             CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            34689999999998643    679999999999999999999999999999999987410  026898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            +...+. +.++.. ++.  .++.++..+.....+... ........++++.+++.      .+..+..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence                  112333 444432 221  466666654433333211 11223455666666552      2556779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE  191 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.9e-30  Score=222.61  Aligned_cols=172  Identities=14%  Similarity=0.080  Sum_probs=127.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      .++++++||++.|++..    +++++||++.+|++++|+||||||||||+++|+|++...  .|++|+ .+++...    
T Consensus        18 ~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   93 (267)
T PRK14237         18 EIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE   93 (267)
T ss_pred             CeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence            45799999999997643    779999999999999999999999999999999998410  147998 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            ....+. ++++... +.  .++.++........+... ......+.++++.+++.      .+..+..||+||+
T Consensus        94 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~  169 (267)
T PRK14237         94 INVYEMRKHIGM-VFQRPNP-FA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ  169 (267)
T ss_pred             CChHHHhcceEE-EecCCcc-cc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence                  112333 5554332 22  366666655332223211 11223456677777663      3566779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+..++.+.+++.+.
T Consensus       170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  209 (267)
T PRK14237        170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL  209 (267)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=2.6e-30  Score=221.45  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=113.6

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------CCCeeEEEecCCCCCcCccC
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL  167 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~d~~~~~~~~l  167 (255)
                      +|+++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       ....+. +..+...++ ..+
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~  110 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL  110 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence            7799999999999999999999999999999999997   99999 4555321       112233 332221111 225


Q ss_pred             CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~  245 (255)
                      ++.++........+............+++.+++.  .+.++..||+||+||+++|++++.+|+++|+||||++||+..++
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            6666555443333332222223456677777765  35667899999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 025256          246 DVSSMFDE  253 (255)
Q Consensus       246 ~l~~ll~~  253 (255)
                      .+.++|.+
T Consensus       191 ~l~~~l~~  198 (236)
T cd03267         191 NIRNFLKE  198 (236)
T ss_pred             HHHHHHHH
Confidence            99999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=223.80  Aligned_cols=169  Identities=14%  Similarity=0.101  Sum_probs=124.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~-----  147 (255)
                      .+++++||++.|++..    +|+++||+|++|++++|+||||||||||+++|+|++..  .+|++|+ .+++...     
T Consensus        12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            4799999999998643    77999999999999999999999999999999999741  1248898 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccch
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr  216 (255)
                           +...+. ++++.. ++.  .++.++..+.....++.. .......++++.+++.      .+.++..||+||+||
T Consensus        88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYTG-DMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCcH-HHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence                 112333 454432 222  255565544332222211 1123345667766552      355677999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  199 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE  199 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.97  E-value=1.6e-30  Score=213.62  Aligned_cols=145  Identities=22%  Similarity=0.306  Sum_probs=106.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|             . +.+
T Consensus         1 i~~~~l~~~~~~~~----~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G-------------~-i~~   59 (178)
T cd03229           1 LELKNVSKRYGQKT----VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSG-------------S-ILI   59 (178)
T ss_pred             CEEEEEEEEECCeE----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCce-------------E-EEE
Confidence            46889999997643    6799999999999999999999999999999999984   4444             4 445


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..  .+  ..........++ ++........++.+++.+.       ||+||+||+++|++++.+|+++|+||||
T Consensus        60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            5543211  00  001111222232 3322222223555555443       9999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 025256          237 LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+.++..+.+++.+.
T Consensus       129 ~~LD~~~~~~l~~~l~~~  146 (178)
T cd03229         129 SALDPITRREVRALLKSL  146 (178)
T ss_pred             ccCCHHHHHHHHHHHHHH
Confidence            999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=7.5e-30  Score=212.44  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=120.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----CCe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDV  151 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----~~~  151 (255)
                      +++++|+++.|++..    +++ +||++++|++++|+||||||||||+++|+|++.   |++|+ .+++....    ...
T Consensus         1 ~l~~~~l~~~~~~~~----l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIEQKN----LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC   72 (195)
T ss_pred             CeEEEEeeEEECCcE----EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence            478999999997522    335 999999999999999999999999999999997   99999 45553221    112


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      +. +.++....  ...++.++..+.....+     .......+++.+++.  .+..+..||+||+||+++|++++.+|++
T Consensus        73 ~~-~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~  144 (195)
T PRK13541         73 TY-IGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL  144 (195)
T ss_pred             Ee-ccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            22 33332111  22466666654332211     234456677777765  3566779999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||||++||+..++.+.+++.+
T Consensus       145 lllDEP~~~LD~~~~~~l~~~l~~  168 (195)
T PRK13541        145 WLLDEVETNLSKENRDLLNNLIVM  168 (195)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999864

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=1.7e-30  Score=217.58  Aligned_cols=157  Identities=13%  Similarity=0.072  Sum_probs=109.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ..+.++||++.|+.......+++++||++++|++++|+||||||||||+++|+|+++...|++|+              +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--------------i   67 (202)
T cd03233           2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--------------I   67 (202)
T ss_pred             ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE--------------E
Confidence            35789999999976422334779999999999999999999999999999999998411124444              3


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                      .++|..+..     .  ........++ +++.......++.+++.+.    .+..+..||+||+||+++|++++.+|+++
T Consensus        68 ~i~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~ll  140 (202)
T cd03233          68 HYNGIPYKE-----F--AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVL  140 (202)
T ss_pred             EECCEECcc-----c--hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence            444432210     0  0001111121 2211111112333332221    45567799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+..++.+.+++.+
T Consensus       141 llDEPt~~LD~~~~~~~~~~l~~  163 (202)
T cd03233         141 CWDNSTRGLDSSTALEILKCIRT  163 (202)
T ss_pred             EEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=4e-30  Score=225.82  Aligned_cols=170  Identities=14%  Similarity=0.162  Sum_probs=128.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---cc-ccCCCCCC----
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVKP----  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~---G~-~~~~~~~~----  148 (255)
                      +++++|+++.|++...  .+++++||+|++|++++|+||||||||||+++|+|++.   |++   |+ .+++....    
T Consensus         5 ~l~i~~l~~~~~~~~~--~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~   79 (282)
T PRK13640          5 IVEFKHVSFTYPDSKK--PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV   79 (282)
T ss_pred             eEEEEEEEEEcCCCCc--cceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence            6999999999975211  26799999999999999999999999999999999997   887   77 45553221    


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...|. ++++..... ...++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        80 ~~~~~~ig~-v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lara  157 (282)
T PRK13640         80 WDIREKVGI-VFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGI  157 (282)
T ss_pred             HHHHhheEE-EEECHHHhh-ccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence                12344 555532111 1256667665433333332211223466778888876  366778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+..++.+.++|.+
T Consensus       158 l~~~P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        158 LAVEPKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             HHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.96  E-value=6.2e-30  Score=218.45  Aligned_cols=166  Identities=16%  Similarity=0.155  Sum_probs=125.8

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |+.|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~~~----il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGGFV----ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            46889999998643    6799999999999999999999999999999999997   99998 4655321      123


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +.++.....  .+++.++..+.....+............+++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (232)
T cd03300          74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK  150 (232)
T ss_pred             eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            343 455433221  246656554433222221111233456778887876  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       151 llllDEP~~gLD~~~~~~l~~~l~~  175 (232)
T cd03300         151 VLLLDEPLGALDLKLRKDMQLELKR  175 (232)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-30  Score=224.24  Aligned_cols=169  Identities=13%  Similarity=0.163  Sum_probs=125.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ..+|+++||++.|++..    +++++||++.+|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~   77 (265)
T PRK10253          5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK   77 (265)
T ss_pred             ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence            35799999999998643    6799999999999999999999999999999999997   99999 4555321      


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHH-hcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                        ....+. ++++.....  ..++.++...... ..+.   ........+.++++.+++.  .+..+..||+||+||+++
T Consensus        78 ~~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l  154 (265)
T PRK10253         78 EVARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI  154 (265)
T ss_pred             HHhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence              112343 555543221  2344444332110 0000   0011223456778877775  467788999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus       155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.3e-30  Score=219.86  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=126.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++....|++|+ .+++...        
T Consensus         2 ~~~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGKKQ----ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECCEe----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            578999999998643    679999999999999999999999999999999997311268998 4555321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC--CCcHHHHHHHHHhhcCC------CCCCCCCCCccccchhhh
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qrv~~  219 (255)
                      +...+. ++++... +.  .++.++..+.....+...  ......+.++++.+++.      .+..+..||+||+||+++
T Consensus        78 ~~~i~~-~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  153 (246)
T PRK14269         78 RKNVGM-VFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI  153 (246)
T ss_pred             hhhEEE-EecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence            112343 5555432 22  366666554322222211  11223456788888874      345677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|+++|+||||++||+.++..+.++|.+
T Consensus       154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  187 (246)
T PRK14269        154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE  187 (246)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=6.2e-30  Score=218.11  Aligned_cols=146  Identities=16%  Similarity=0.234  Sum_probs=120.3

Q ss_pred             cceEEEccceeecccccc-----ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC
Q 025256           75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~-----~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~  149 (255)
                      +++++++||+|.|.....     .+.|++||||+|++||++||+|.||||||||.|+|.|+++   |++           
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~-----------   67 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTS-----------   67 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCC-----------
Confidence            568999999999975321     2568999999999999999999999999999999999995   444           


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                        |. |.++|..+..  +.               .....+.+.++++.+++.   ...++.+|||||+||+.+||||+.+
T Consensus        68 --G~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~  127 (268)
T COG4608          68 --GE-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN  127 (268)
T ss_pred             --ce-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence              55 5666654321  11               112335678888888876   4688999999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++++|||++.||...+.++.+++...
T Consensus       128 P~liV~DEpvSaLDvSiqaqIlnLL~dl  155 (268)
T COG4608         128 PKLIVADEPVSALDVSVQAQILNLLKDL  155 (268)
T ss_pred             CcEEEecCchhhcchhHHHHHHHHHHHH
Confidence            9999999999999999999999998653

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.96  E-value=4.8e-30  Score=242.38  Aligned_cols=166  Identities=17%  Similarity=0.146  Sum_probs=127.8

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----  148 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~----  148 (255)
                      ++++++++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....    
T Consensus         8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~   80 (510)
T PRK15439          8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP   80 (510)
T ss_pred             CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            346899999999998643    6799999999999999999999999999999999997   99999 45553211    


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                           ...+. +.++....  ..+++.++..+...    ........+.++++.+++.  .+.++..||+||+||+++|+
T Consensus        81 ~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  153 (510)
T PRK15439         81 AKAHQLGIYL-VPQEPLLF--PNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR  153 (510)
T ss_pred             HHHHhCCEEE-EeccCccC--CCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence                 12344 55543321  22455554433110    1111234567788888885  35677899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+.+|++||+||||++||+..++.+.++|.+
T Consensus       154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        154 GLMRDSRILILDEPTASLTPAETERLFSRIRE  185 (510)
T ss_pred             HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.8e-30  Score=223.95  Aligned_cols=171  Identities=13%  Similarity=0.114  Sum_probs=127.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      .++|++++|++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++..  .|++|+ .+++...    
T Consensus        37 ~~~l~i~~l~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~  112 (285)
T PRK14254         37 ETVIEARDLNVFYGDEQ----ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD  112 (285)
T ss_pred             CceEEEEEEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence            46799999999997643    679999999999999999999999999999999998410  147898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                            ....+. +.++... +.  .++.++..+.....+.+. .....+.++++.+++.      .+.++..||+||+|
T Consensus       113 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        113 VDPVALRRRIGM-VFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             cchHhhhccEEE-EecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence                  112333 5555432 22  255666554333333221 1233456777777763      35667899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~  226 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL  226 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=5.2e-30  Score=224.52  Aligned_cols=171  Identities=13%  Similarity=0.144  Sum_probs=128.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++||++.|++.. ...+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus         4 ~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~~   79 (277)
T PRK13642          4 ILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWNL   79 (277)
T ss_pred             eEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHHH
Confidence            799999999997421 2236799999999999999999999999999999999998   99999 4665322        


Q ss_pred             CCCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      ....|. +.++.. .+.  ..++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|++++
T Consensus        80 ~~~i~~-v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~  156 (277)
T PRK13642         80 RRKIGM-VFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIA  156 (277)
T ss_pred             hcceEE-EEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHH
Confidence            122344 555532 122  246666665433222322111123456777777764  35567799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+.+++.+.++|.+.
T Consensus       157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~l  186 (277)
T PRK13642        157 LRPEIIILDESTSMLDPTGRQEIMRVIHEI  186 (277)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.3e-29  Score=218.99  Aligned_cols=172  Identities=12%  Similarity=0.098  Sum_probs=124.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~-----  147 (255)
                      ..++++|+++.|++..    +++|+||+|++|++++|+||||||||||+++|+|++.  ...|++|+ .+++...     
T Consensus         3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            3689999999998643    7799999999999999999999999999999999973  00126898 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                           +...+. ++++...+  ..+++.++........+.. .........+.++.+++.      ....+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (252)
T PRK14256         79 DPVSIRRRVGM-VFQKPNPF--PAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ  155 (252)
T ss_pred             ChHHhhccEEE-EecCCCCC--CcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence                 112333 55543322  2246666654432222221 111123456677777763      23567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  194 (252)
T PRK14256        156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL  194 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-29  Score=218.96  Aligned_cols=167  Identities=14%  Similarity=0.142  Sum_probs=123.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC--
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~--  147 (255)
                      ++++++||++.|++..    +++++||+|.+|++++|+||||||||||+++|+|+++   |+     +|+ .+++...  
T Consensus         3 ~~l~~~~l~~~~~~~~----il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          3 PKIKIRGVNFFYHKHQ----VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             ceEEEEEEEEEECCee----EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence            5789999999998643    6799999999999999999999999999999999996   76     588 4554321  


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (255)
                              +...+. ++++... +.  .++.++..+.....+... ......+...++.+++.      .+..+..||+|
T Consensus        76 ~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  151 (251)
T PRK14249         76 PNLDVVNLRKRVGM-VFQQPNP-FP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG  151 (251)
T ss_pred             cccChHHhhceEEE-EecCCcc-Cc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence                    112333 5555432 21  355666554332223221 11123344556655542      35667799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++++.+|+++|+||||++||+..++.+.++|.+
T Consensus       152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  192 (251)
T PRK14249        152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE  192 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998865

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=2.4e-30  Score=211.55  Aligned_cols=140  Identities=21%  Similarity=0.276  Sum_probs=105.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++.   |++|             . +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~   59 (173)
T cd03230           1 IEVRNLSKRYGKKT----ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSG-------------E-IKV   59 (173)
T ss_pred             CEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence            46789999997633    6799999999999999999999999999999999985   4554             4 445


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..  ..     ...+...++ +++.......++.+++.         ||+||+||+++|++++.+|+++|+||||
T Consensus        60 ~g~~~~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt  123 (173)
T cd03230          60 LGKDIKK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT  123 (173)
T ss_pred             CCEEccc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            5543211  00     111222333 33322222234555543         9999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 025256          237 LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+..++.+.++|.+.
T Consensus       124 ~~LD~~~~~~l~~~l~~~  141 (173)
T cd03230         124 SGLDPESRREFWELLREL  141 (173)
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            999999999999998753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.96  E-value=5.2e-30  Score=217.19  Aligned_cols=170  Identities=18%  Similarity=0.129  Sum_probs=126.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      ++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   78 (220)
T TIGR02982         2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKELV   78 (220)
T ss_pred             EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHHH
Confidence            6889999999752111237799999999999999999999999999999999997   99999 46653221        


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. ++.+... + ..+++.++..+...... .........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        79 ~~~~~i~~-~~q~~~~-~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lara  155 (220)
T TIGR02982        79 QLRRNIGY-IFQAHNL-L-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARA  155 (220)
T ss_pred             HHHhheEE-EcCChhh-c-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHH
Confidence               12333 4444322 2 12566666554332221 11111223567888888876  356677999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+|||+++||+.+++.+.++|.+
T Consensus       156 l~~~p~illlDEP~~~LD~~~~~~l~~~l~~  186 (220)
T TIGR02982       156 LVHRPKLVLADEPTAALDSKSGRDVVELMQK  186 (220)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.96  E-value=5.5e-30  Score=221.83  Aligned_cols=167  Identities=14%  Similarity=0.112  Sum_probs=125.1

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            57899999998644    7799999999999999999999999999999999997   99999 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHH-h---cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                      ...+. +.++....  ..+++.++...... .   .+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        75 ~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  151 (256)
T TIGR03873        75 RRVAL-VEQDSDTA--VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA  151 (256)
T ss_pred             hheEE-ecccCccC--CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            12333 44443211  12466666544211 1   1111111233566778887775  356778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  183 (256)
T TIGR03873       152 LAQEPKLLLLDEPTNHLDVRAQLETLALVREL  183 (256)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1e-29  Score=219.38  Aligned_cols=171  Identities=16%  Similarity=0.153  Sum_probs=125.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~-----  147 (255)
                      ++++++|+++.|+...    +++++||+|++|++++|+||||||||||+++|+|++.  ...|++|+ .+++...     
T Consensus         3 ~~l~~~~l~~~~~~~~----~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGNYE----ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            4789999999997643    6799999999999999999999999999999999984  00137898 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                           +...+. +.++... +.  .++.++..+.....+... ......+..+++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14251         79 DLVELRKEVGM-VFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ  154 (251)
T ss_pred             hHHHhhccEEE-EecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence                 112333 4444332 22  466666654333233221 11123445667776662      35567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+.+++.+.+++.+.
T Consensus       155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  193 (251)
T PRK14251        155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL  193 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.96  E-value=7.2e-30  Score=218.77  Aligned_cols=166  Identities=17%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      ++++|+++.|++..    +++++||++.+|++++|+||||||||||+++|+|++.   |++|+ .+++...      ...
T Consensus         1 i~i~~l~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGSFQ----ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECCee----eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            46889999998643    6799999999999999999999999999999999997   99999 4555321      112


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. ++.+... + ...+..++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~-~-~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (237)
T TIGR00968        74 IGF-VFQHYAL-F-KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ  150 (237)
T ss_pred             EEE-EecChhh-c-cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            333 4444322 1 1246666655433222221112234456778887775  355667999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+|||+++||+.+++.+.++|.+
T Consensus       151 llllDEP~~~LD~~~~~~~~~~l~~  175 (237)
T TIGR00968       151 VLLLDEPFGALDAKVRKELRSWLRK  175 (237)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.7e-30  Score=242.46  Aligned_cols=168  Identities=15%  Similarity=0.138  Sum_probs=126.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|++.   |++|+ .+++....      
T Consensus         4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700          4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL   76 (510)
T ss_pred             ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence            5799999999998643    6799999999999999999999999999999999997   99999 45553211      


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHH----hcCCC---CCCcHHHHHHHHHhhcCC--CCCCCCCCCccccch
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr  216 (255)
                         ...+. +.++....  ..+++.++......    ..+..   .......+.++++.+++.  .+.++..||+||+||
T Consensus        77 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  153 (510)
T PRK09700         77 AAQLGIGI-IYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM  153 (510)
T ss_pred             HHHCCeEE-Eeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence               12344 55543221  12455555433111    01110   001123456788888875  356678999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (510)
T PRK09700        154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ  190 (510)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=6.1e-30  Score=208.77  Aligned_cols=140  Identities=18%  Similarity=0.181  Sum_probs=106.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|             . +.+
T Consensus         1 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G-------------~-i~~   61 (171)
T cd03228           1 IEFKNVSFSYPGRP--KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSG-------------E-ILI   61 (171)
T ss_pred             CEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCC-------------E-EEE
Confidence            46889999997641  126799999999999999999999999999999999995   4444             4 455


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..  .+    ....+...++ +++..... .++.+++          ||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~  124 (171)
T cd03228          62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT  124 (171)
T ss_pred             CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            5543211  01    1112223333 44332222 3566665          9999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++++.+++.+
T Consensus       125 ~gLD~~~~~~l~~~l~~  141 (171)
T cd03228         125 SALDPETEALILEALRA  141 (171)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999999875

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.3e-29  Score=219.96  Aligned_cols=170  Identities=15%  Similarity=0.140  Sum_probs=126.6

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~  147 (255)
                      .+.+++++||++.|++..    +++++||++++|++++|+|+||||||||+|+|+|++.   |     ++|+ .+++...
T Consensus         4 ~~~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i   76 (259)
T PRK14260          4 LIPAIKVKDLSFYYNTSK----AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNI   76 (259)
T ss_pred             ccceEEEEEEEEEECCeE----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEec
Confidence            356899999999998643    6799999999999999999999999999999999985   4     4798 4555321


Q ss_pred             ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCC
Q 025256          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFD  210 (255)
Q Consensus       148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS  210 (255)
                                +...+. +.++... +.  .++.++........+. ++........++++.+++.      .+..+..||
T Consensus        77 ~~~~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS  152 (259)
T PRK14260         77 YDPRININRLRRQIGM-VFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLS  152 (259)
T ss_pred             cccccchHhhhhheEE-Eeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCC
Confidence                      112333 5555432 22  4666666543322221 2111223455677776652      356677999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (259)
T PRK14260        153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL  196 (259)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998763

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=6.2e-30  Score=209.12  Aligned_cols=140  Identities=17%  Similarity=0.219  Sum_probs=106.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|             . +.+
T Consensus         1 i~~~~l~~~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~   61 (173)
T cd03246           1 LEVENVSFRYPGAE--PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSG-------------R-VRL   61 (173)
T ss_pred             CEEEEEEEEcCCCC--CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCC-------------e-EEE
Confidence            46889999997521  126799999999999999999999999999999999995   5544             4 455


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..  .+    ....+...++ +++..... .++.+++          ||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt  124 (173)
T cd03246          62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN  124 (173)
T ss_pred             CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            5543221  11    1112223333 44332222 3566665          9999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++.+.+++.+
T Consensus       125 ~~LD~~~~~~l~~~l~~  141 (173)
T cd03246         125 SHLDVEGERALNQAIAA  141 (173)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999999865

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-29  Score=218.70  Aligned_cols=167  Identities=13%  Similarity=0.131  Sum_probs=121.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK---  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~---  147 (255)
                      +++++||++.|++..    +++++||+|++|++++|+||||||||||+|+|+|++.   |+     +|+ .+++...   
T Consensus         4 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          4 LLSAQDVNIYYGDKQ----AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEEeeeEEEECCEE----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence            689999999998643    6799999999999999999999999999999999985   54     788 4555321   


Q ss_pred             -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcC------CCCCCCCCCCccc
Q 025256          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l------~~~~~~~~lS~G~  213 (255)
                             +...+. +.++....  ..+++.++........+... +.......+.++.+++      ..+..+..||+||
T Consensus        77 ~~~~~~~~~~i~~-~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  153 (252)
T PRK14272         77 RVDPVAMRRRVGM-VFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ  153 (252)
T ss_pred             ccCHHHhhceeEE-EeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence                   112333 55544322  22466666544332222211 1111223344444433      1356678999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=6.5e-30  Score=210.27  Aligned_cols=139  Identities=22%  Similarity=0.272  Sum_probs=108.4

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecC
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD  158 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d  158 (255)
                      +++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |             +.|. |.++
T Consensus         1 ~~~~l~~~~~~~~----~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~-------------~~G~-v~~~   59 (180)
T cd03214           1 EVENLSVGYGGRT----VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---P-------------SSGE-ILLD   59 (180)
T ss_pred             CeeEEEEEECCee----eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---C-------------CCcE-EEEC
Confidence            4679999997633    6799999999999999999999999999999999984   4             4455 5566


Q ss_pred             CCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCC
Q 025256          159 GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (255)
Q Consensus       159 ~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp  235 (255)
                      |..+..  ..    ........++ ++         +++.+++..  +..+..||+||+||+++|++++.+|+++|+|||
T Consensus        60 g~~~~~--~~----~~~~~~~i~~~~q---------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  124 (180)
T cd03214          60 GKDLAS--LS----PKELARKIAYVPQ---------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP  124 (180)
T ss_pred             CEECCc--CC----HHHHHHHHhHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            653321  11    1112222232 21         666666652  456779999999999999999999999999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 025256          236 YLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       236 ~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+.+++.+.+++.+
T Consensus       125 ~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214         125 TSHLDIAHQIELLELLRR  142 (180)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            999999999999999865

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.6e-29  Score=219.93  Aligned_cols=170  Identities=14%  Similarity=0.113  Sum_probs=121.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~-----  147 (255)
                      ++|+++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|++..  ..|++|+ .+++...     
T Consensus         9 ~~l~i~~v~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243          9 TVLRTENLNVYYGSFL----AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             eEEEEeeeEEEECCEE----EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence            5799999999998643    67999999999999999999999999999999999741  0137898 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCccccch
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr  216 (255)
                           ....+. +.++... +.  .++.++..+.....+.. .........+++.+++.      .+..+..||+||+||
T Consensus        85 ~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr  159 (264)
T PRK14243         85 DPVEVRRRIGM-VFQKPNP-FP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR  159 (264)
T ss_pred             ChHHHhhhEEE-EccCCcc-cc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence                 112333 4444322 21  25555544322222211 11122334455555542      345677899999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  197 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL  197 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-29  Score=220.13  Aligned_cols=172  Identities=13%  Similarity=0.130  Sum_probs=123.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      .++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|++...  -|++|+ .+++...    
T Consensus        19 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         19 EHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            35799999999998643    679999999999999999999999999999999986200  158898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            ....+. +.++... +.  .++.++........+... ........+.++.+++.      .+..+..||+||+
T Consensus        95 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  170 (268)
T PRK14248         95 INVVNLRREIGM-VFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ  170 (268)
T ss_pred             ccHHHHhccEEE-EecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence                  112333 4544332 21  255555543322111111 11123345566666653      3466789999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+..++.+.+++.+.
T Consensus       171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  210 (268)
T PRK14248        171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL  210 (268)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=221.92  Aligned_cols=170  Identities=15%  Similarity=0.062  Sum_probs=121.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----C-CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PD  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~-~~  150 (255)
                      +++++||++.|++. +.  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...    . ..
T Consensus         6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence            58999999999631 12  6799999999999999999999999999999999997   99999 4665321    1 12


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHH-HhcCC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      .+. +.++............++..... ...+.   +..........+++.+++.  .+.++..||+||+||+++|++++
T Consensus        80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~  158 (272)
T PRK15056         80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA  158 (272)
T ss_pred             EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            333 44442211100012222221100 00111   1111223456677888775  45677899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.+++.+.++|.+
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~  187 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLRE  187 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=244.86  Aligned_cols=175  Identities=16%  Similarity=0.177  Sum_probs=132.3

Q ss_pred             cceEEEccceeeccccc-------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC
Q 025256           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~-------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~  146 (255)
                      .++++++||++.|+...       ....+++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++..
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~  387 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR  387 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence            36899999999996210       01237799999999999999999999999999999999997   99999 466532


Q ss_pred             C-----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC---CCCCCCCCCc
Q 025256          147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       147 ~-----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (255)
                      .           ....+. ++++.+......+++.++..+.....+.. .......+.++++.+++.   .+.++.+|||
T Consensus       388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg  466 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG  466 (623)
T ss_pred             CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence            1           112444 66664311222356666665433222321 111224567888988884   4678889999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++|+.+|++||+||||++||+..+.++.++|.+
T Consensus       467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~  508 (623)
T PRK10261        467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD  508 (623)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999965

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=3.2e-30  Score=222.46  Aligned_cols=173  Identities=16%  Similarity=0.220  Sum_probs=140.2

Q ss_pred             cceEEEccceeecccccc--------------------ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc
Q 025256           75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI  134 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~--------------------~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~  134 (255)
                      +..|+++||.|.||...+                    .++.++|+||+|++|||..|+|-||||||||+|+|.+++.  
T Consensus         2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--   79 (386)
T COG4175           2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--   79 (386)
T ss_pred             CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence            456899999999986421                    2456789999999999999999999999999999999998  


Q ss_pred             CCCCcc-ccCCCCC------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC
Q 025256          135 WPQKAS-SFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (255)
Q Consensus       135 ~p~~G~-~~~~~~~------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~  201 (255)
                       |++|+ .+++...            +.+..- +++. |-+. ++.++.+|..+.....|++.....+...++++.+++.
T Consensus        80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sM-VFQ~-FaLl-PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~  155 (386)
T COG4175          80 -PTRGEILVDGKDIAKLSAAELRELRRKKISM-VFQS-FALL-PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLE  155 (386)
T ss_pred             -CCCceEEECCcchhcCCHHHHHHHHhhhhhh-hhhh-hccc-cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence             99999 4665321            122232 3322 2221 2368888888888888888877788889999999886


Q ss_pred             --CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       202 --~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                        .+.++.+|||||+|||.+||||+.+|+||++||||+.|||--+.++.+-|-+
T Consensus       156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~  209 (386)
T COG4175         156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE  209 (386)
T ss_pred             hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence              5788899999999999999999999999999999999999998888876644

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.9e-29  Score=220.71  Aligned_cols=175  Identities=16%  Similarity=0.112  Sum_probs=124.0

Q ss_pred             ccCccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC
Q 025256           71 QQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK  147 (255)
Q Consensus        71 ~~~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~  147 (255)
                      +|...++|+++||++.|++..    +|+++||+|++|++++|+||||||||||+++|+|++...  .|++|+ .+++...
T Consensus        14 ~~~~~~~l~~~nl~~~~~~~~----~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l   89 (274)
T PRK14265         14 INPDHSVFEVEGVKVFYGGFL----ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI   89 (274)
T ss_pred             cCCCCceEEEeeEEEEeCCeE----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence            344567899999999998643    679999999999999999999999999999999998410  125888 4555321


Q ss_pred             ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (255)
                                ....+. ++++... +.  .++.++........+... .......+.++.+++.      .+.++..||+
T Consensus        90 ~~~~~~~~~~~~~i~~-v~q~~~l-~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  164 (274)
T PRK14265         90 YDSQINSVKLRRQVGM-VFQRPNP-FP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSG  164 (274)
T ss_pred             ccccchhHHHhhcEEE-EccCCcc-cc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCH
Confidence                      112333 4444332 21  245555443222111111 1122334455555542      3456778999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  207 (274)
T PRK14265        165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL  207 (274)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999763

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.96  E-value=1.1e-29  Score=214.28  Aligned_cols=157  Identities=15%  Similarity=0.187  Sum_probs=118.4

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------------
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------------  148 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------------  148 (255)
                      +|+|.|++..    +  |+||++++ ++++|+||||||||||+++|+|+++   |++|+ .+++....            
T Consensus         5 ~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~   74 (214)
T cd03297           5 DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINLPPQQ   74 (214)
T ss_pred             eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhhhhHh
Confidence            8999998843    3  99999999 9999999999999999999999997   99999 45553211            


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. ++++... + ..+++.++........  ........+.++++.+++..  +..+..||+||+||+++|++++.+
T Consensus        75 ~~i~~-~~q~~~~-~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~  149 (214)
T cd03297          75 RKIGL-VFQQYAL-F-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQ  149 (214)
T ss_pred             hcEEE-EecCCcc-C-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcC
Confidence            12333 4444322 1 1245555554332111  11112335677888888763  567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.+++.+
T Consensus       150 p~llllDEPt~~LD~~~~~~l~~~l~~  176 (214)
T cd03297         150 PELLLLDEPFSALDRALRLQLLPELKQ  176 (214)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=8e-30  Score=204.51  Aligned_cols=161  Identities=17%  Similarity=0.228  Sum_probs=121.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~  150 (255)
                      ++.++++|+.|+||...    +|++||++.++|+++.|+|.|||||||+||||.-+.+   |+.|. ..+++..   +..
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~   76 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK   76 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence            45799999999999876    7899999999999999999999999999999999987   99998 3554321   122


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhh--------------------------cCC--
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNL--------------------------RNQ--  201 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l--------------------------~l~--  201 (255)
                      .|..+..|.           ..+...+.+.++ ++.|++...+++++|+                          ++.  
T Consensus        77 ~G~l~~ad~-----------~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek  145 (256)
T COG4598          77 DGQLKPADK-----------RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK  145 (256)
T ss_pred             CCCeeeCCH-----------HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence            222221111           112223334444 5555555555555554                          443  


Q ss_pred             CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+.|+..|||||+||++|||||+.+|+++++||||+.|||+-.-++...+..
T Consensus       146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~  197 (256)
T COG4598         146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD  197 (256)
T ss_pred             hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence            3567789999999999999999999999999999999999998888888764

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.3e-29  Score=228.95  Aligned_cols=158  Identities=15%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||++ ||+|.|++..      .++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~-~l~k~~~~~~------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          1 MLEL-NFKQQLGDLC------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             CeEE-EEEEEeCCEE------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence            4777 9999998632      38999999999999999999999999999999998   99999 4555321        


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                          ....+. +.++.. ++ +.+++.++..+...      ......+.++++.+++.  .+.++..||+||+||+++|+
T Consensus        71 ~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar  141 (352)
T PRK11144         71 LPPEKRRIGY-VFQDAR-LF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR  141 (352)
T ss_pred             cchhhCCEEE-EcCCcc-cC-CCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence                112343 454433 22 23566666544211      12234567888888886  36677899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+.+|++||+||||++||+..++.++++|.+
T Consensus       142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~  173 (352)
T PRK11144        142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER  173 (352)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=5.3e-30  Score=211.18  Aligned_cols=143  Identities=21%  Similarity=0.236  Sum_probs=105.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++|+++.|        +++++||++++|++++|+||||||||||+++|+|+++   |++|+              +
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i   57 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGE--------------I   57 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCce--------------E
Confidence            469999999998        4699999999999999999999999999999999995   55554              4


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCC-CCCC---cHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      .++|..+..     .......+...++ +++.   ......++.+++.+...     ||+||+||+++|++++.+|+++|
T Consensus        58 ~~~g~~~~~-----~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll  127 (182)
T cd03215          58 TLDGKPVTR-----RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI  127 (182)
T ss_pred             EECCEECCc-----cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence            444432211     0000111122232 3321   11222345555543321     99999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||+++||+.+++.+.+++.+
T Consensus       128 lDEP~~~LD~~~~~~l~~~l~~  149 (182)
T cd03215         128 LDEPTRGVDVGAKAEIYRLIRE  149 (182)
T ss_pred             ECCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-29  Score=218.19  Aligned_cols=172  Identities=13%  Similarity=0.090  Sum_probs=124.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~----  147 (255)
                      .++|+++|+++.|++..    +|+|+||++++|++++|+||||||||||+++|+|++..  .++++|+ .+++...    
T Consensus         4 ~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   79 (253)
T PRK14261          4 EIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSG   79 (253)
T ss_pred             cceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccc
Confidence            46899999999998643    77999999999999999999999999999999998741  0124898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            ....+. ++++... +.  .++.++..+.....+... ........++++.+++.      .+..+..||+||+
T Consensus        80 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  155 (253)
T PRK14261         80 ADVVALRRKIGM-VFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ  155 (253)
T ss_pred             cchhhhhceEEE-EecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence                  111333 4444332 22  366666654433323211 11122345666666552      3466779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~  195 (253)
T PRK14261        156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL  195 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.96  E-value=1.2e-29  Score=217.04  Aligned_cols=165  Identities=13%  Similarity=0.154  Sum_probs=125.1

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++++++.|++ .    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~-~----~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKE-F----KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCC-c----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            467899999975 2    5799999999999999999999999999999999997   99999 4555321      113


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .+. +.++....  ..+++.++........+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        73 i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  149 (235)
T cd03299          73 ISY-VPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK  149 (235)
T ss_pred             EEE-EeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence            343 45443322  2256666665433232221111223456778888776  356677999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       150 llllDEPt~gLD~~~~~~l~~~l~~  174 (235)
T cd03299         150 ILLLDEPFSALDVRTKEKLREELKK  174 (235)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998865

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=6.4e-30  Score=209.93  Aligned_cols=142  Identities=18%  Similarity=0.185  Sum_probs=107.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++....  +++++||++++|++++|+||||||||||+++|+|++.   |++             |. +.+
T Consensus         1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~-------------G~-i~~   61 (178)
T cd03247           1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQ-------------GE-ITL   61 (178)
T ss_pred             CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCC-------------CE-EEE
Confidence            4688999999763112  6799999999999999999999999999999999984   444             44 455


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..     .  ....+...++ ++...... .++.+++       +..||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~-----~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~  126 (178)
T cd03247          62 DGVPVSD-----L--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT  126 (178)
T ss_pred             CCEEHHH-----H--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            5542210     0  1112223333 44332222 3555555       6789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++.+.+++.+
T Consensus       127 ~~LD~~~~~~l~~~l~~  143 (178)
T cd03247         127 VGLDPITERQLLSLIFE  143 (178)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999999875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=6.8e-30  Score=207.04  Aligned_cols=127  Identities=18%  Similarity=0.213  Sum_probs=99.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..    +++++||++++||+++|+||||||||||+++|+|++.                +..|. +.+
T Consensus         1 l~~~~l~~~~~~~~----vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~----------------~~~G~-v~~   59 (163)
T cd03216           1 LELRGITKRFGGVK----ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK----------------PDSGE-ILV   59 (163)
T ss_pred             CEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC----------------CCCeE-EEE
Confidence            46889999998643    6799999999999999999999999999999999984                44455 556


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~  237 (255)
                      ++..+..  .+   .........++                       .++||+||+||+++|++++.+|+++|+||||+
T Consensus        60 ~g~~~~~--~~---~~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~  111 (163)
T cd03216          60 DGKEVSF--AS---PRDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA  111 (163)
T ss_pred             CCEECCc--CC---HHHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            6653221  00   00111111222                       11299999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHh
Q 025256          238 FLDGGVWKDVSSMFDE  253 (255)
Q Consensus       238 ~LD~~~~~~l~~ll~~  253 (255)
                      +||+.+++.+.+++.+
T Consensus       112 ~LD~~~~~~l~~~l~~  127 (163)
T cd03216         112 ALTPAEVERLFKVIRR  127 (163)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.96  E-value=1.6e-29  Score=239.83  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=126.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCCC-
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP-  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~~-  148 (255)
                      ++++++|+++.|++......+++++||++++||+++|+||||||||||+|+|+|+++   |     ++|+ .+++.... 
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence            579999999999631111127799999999999999999999999999999999996   4     7898 45553210 


Q ss_pred             -----------CCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCCC-----CCCCCCCCc
Q 025256          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (255)
Q Consensus       149 -----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~  211 (255)
                                 ...|. ++++........+++.++....... .+.........+.++++.+++..     +.++..|||
T Consensus        81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg  159 (529)
T PRK15134         81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG  159 (529)
T ss_pred             CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence                       12444 5665421111113443433322111 13322222345678888888853     567889999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++|+.+|++||+||||++||+..++.+.+++.+
T Consensus       160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.2e-29  Score=216.50  Aligned_cols=170  Identities=18%  Similarity=0.139  Sum_probs=123.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCcc-ccCCCCC----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p---~~G~-~~~~~~~----  147 (255)
                      ++++++||++.|+...    +++++||++.+|++++|+||||||||||+++|+|++.. -|   ++|+ .+++...    
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFYGKFE----ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEECCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence            4799999999998633    67999999999999999999999999999999998620 03   4898 4555321    


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                            ....+. +.++... +.  .++.++..+.....+.... .......+.++.+++.      .+..+..||+||+
T Consensus        79 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         79 EDVVQLRKQVGM-VFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ  154 (252)
T ss_pred             ccHHHhcCeEEE-EECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence                  112333 4554332 22  3666666543332332111 1122345556666542      3456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL  194 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3e-29  Score=217.91  Aligned_cols=168  Identities=17%  Similarity=0.164  Sum_probs=123.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Ccc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-----~G~-~~~~~~~-  147 (255)
                      .++++++|+++.|++..    +|+++||++++|++++|+|+||||||||+++|+|+++   |+     +|+ .+++... 
T Consensus         5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~   77 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY   77 (261)
T ss_pred             cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence            45799999999997643    6799999999999999999999999999999999996   64     676 3444221 


Q ss_pred             ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCc
Q 025256          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (255)
                               +...+. ++++.. ++.  .++.++........+. +.........++++.+++.      .+..+..||+
T Consensus        78 ~~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  153 (261)
T PRK14258         78 ERRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG  153 (261)
T ss_pred             ccccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence                     111222 444332 221  4566655443222222 1111123456677777663      2456679999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus       154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~  195 (261)
T PRK14258        154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS  195 (261)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.96  E-value=1.6e-29  Score=239.41  Aligned_cols=167  Identities=16%  Similarity=0.167  Sum_probs=125.4

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCccc-cC-----------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASS-FD-----------  143 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~~-~~-----------  143 (255)
                      |+++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|++  .   |++|++ ++           
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~   73 (520)
T TIGR03269         1 IEVKNLTKKFDGKE----VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE   73 (520)
T ss_pred             CEEEEEEEEECCeE----eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence            47899999997643    679999999999999999999999999999999996  5   899983 43           


Q ss_pred             ------------CCCC------------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH
Q 025256          144 ------------SQVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN  193 (255)
Q Consensus       144 ------------~~~~------------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~  193 (255)
                                  +...                  +...+. ++++...++ ..+++.++..+.....+.........+.+
T Consensus        74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  151 (520)
T TIGR03269        74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVD  151 (520)
T ss_pred             cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                        1000                  011333 455422221 12466666655433334322222345677


Q ss_pred             HHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          194 CLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       194 ~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+++..  +.++..|||||+||+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus       152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  213 (520)
T TIGR03269       152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE  213 (520)
T ss_pred             HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence            888888853  567789999999999999999999999999999999999999999988865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.6e-29  Score=219.48  Aligned_cols=171  Identities=13%  Similarity=0.109  Sum_probs=122.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~-----  147 (255)
                      ++++++|+++.|++..    +++++||+|++|++++|+|+||||||||+++|+|+++  ..+|++|+ .+++...     
T Consensus        23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            4799999999998643    6799999999999999999999999999999999984  12258898 4555321     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcC------CCCCCCCCCCccccc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~~q  215 (255)
                           ....+. ++++... +.  .++.++..+.....+.... .....+.+.++.+++      ..+..+..||+||+|
T Consensus        99 ~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q  174 (271)
T PRK14238         99 SVEELRTNVGM-VFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ  174 (271)
T ss_pred             cHHHHhhhEEE-EecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence                 112333 5555432 22  3566665543222222111 011223444544432      135567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  213 (271)
T PRK14238        175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL  213 (271)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.4e-29  Score=218.04  Aligned_cols=170  Identities=16%  Similarity=0.158  Sum_probs=126.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC------CCC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------QVK  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~------~~~  147 (255)
                      .+++++++++++|++..    +++++||++.+|++++|+||||||||||+++|+|++.   |++|+ .++|      ...
T Consensus         8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246          8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence            46799999999998754    7799999999999999999999999999999999997   89876 2333      111


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (255)
                              ....+. +.++....  ..+++.++..+.....+.. .......+.++++.+++.      .+..+..||+|
T Consensus        81 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         81 FQIDAIKLRKEVGM-VFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             ccCCHHHHhcceEE-EccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence                    112333 45444322  2246666665433222221 111123456777777764      24567789999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|+++|+||||++||..+++.+.++|.+.
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~  199 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL  199 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=239.48  Aligned_cols=168  Identities=16%  Similarity=0.156  Sum_probs=127.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~~~~l~~~~~~~~----il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   75 (501)
T PRK11288          3 PYLSFDGIGKTFPGVK----ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA   75 (501)
T ss_pred             ceEEEeeeEEEECCEE----EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence            5799999999998643    6799999999999999999999999999999999997   99999 4555321       


Q ss_pred             --CCCeeEEEecCCCCCcCccCCcccChHHHHH--hcCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 --~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                        ....+. +.++... + ..+++.++..+...  ..+. ........+.++++.+++.  .+.++..|||||+||+++|
T Consensus        76 ~~~~~i~~-v~q~~~~-~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la  152 (501)
T PRK11288         76 ALAAGVAI-IYQELHL-V-PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA  152 (501)
T ss_pred             HHhCCEEE-EEechhc-c-CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence              122444 5554322 1 22566665543211  1111 1111123567788888875  3566779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|++||+||||++||+..++.+.++|.+
T Consensus       153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (501)
T PRK11288        153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRE  185 (501)
T ss_pred             HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.1e-29  Score=218.32  Aligned_cols=173  Identities=15%  Similarity=0.092  Sum_probs=124.9

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC---
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~---  147 (255)
                      ..++++++|+++.|++..    +++++||+|++|++++|+||||||||||+++|+|++..  ..|++|+ .+++...   
T Consensus        22 ~~~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~   97 (272)
T PRK14236         22 EQTALEVRNLNLFYGDKQ----ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK   97 (272)
T ss_pred             CCcEEEEEEEEEEECCee----EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence            356899999999997643    67999999999999999999999999999999999840  0137898 4555321   


Q ss_pred             -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (255)
                             +...+. +.++.. ++.  .++.++........+... ........++++.+++.      .+..+..||+||
T Consensus        98 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq  173 (272)
T PRK14236         98 KVDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ  173 (272)
T ss_pred             ccCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence                   112333 444432 222  255565544322222211 11123355667766653      245677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus       174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~  214 (272)
T PRK14236        174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL  214 (272)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=1.4e-29  Score=221.22  Aligned_cols=167  Identities=16%  Similarity=0.099  Sum_probs=123.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--------Ccc-ccCCCCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--------~G~-~~~~~~~  147 (255)
                      ||+++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |+        +|+ .+++...
T Consensus         1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence            488999999998644    6799999999999999999999999999999999997   77        788 4555321


Q ss_pred             C--------CCeeEEEecCCCCCcCccCCcccChHHHHHhc----CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccc
Q 025256          148 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (255)
Q Consensus       148 ~--------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (255)
                      .        ...+ +++++....+  .+++.++..+.....    +...........++++.+++.  .+..+..||+||
T Consensus        74 ~~~~~~~~~~~~~-~v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (272)
T PRK13547         74 AAIDAPRLARLRA-VLPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE  150 (272)
T ss_pred             ccCCHHHHHhhcE-EecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence            1        1123 3555433222  145555543321100    111111223456778888776  356678999999


Q ss_pred             cchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++         .+|++||+||||++||+..++.+.+++.+
T Consensus       151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  199 (272)
T PRK13547        151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR  199 (272)
T ss_pred             HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999         59999999999999999999999999875

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.8e-29  Score=220.83  Aligned_cols=172  Identities=13%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCcc-ccCCCCC---
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~--~~~p~~G~-~~~~~~~---  147 (255)
                      ..++++++||++.|++..    +++|+||+|++|++++|+||||||||||+++|+|+..  ..+|++|+ .+++...   
T Consensus        36 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~  111 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEFE----AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK  111 (286)
T ss_pred             CceEEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence            356899999999997643    6799999999999999999999999999999999852  11148998 4555321   


Q ss_pred             -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCccc
Q 025256          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (255)
                             +...+. +.++... +.  .++.++..+.....+... ......+.++++.+++.      .+..+..||+||
T Consensus       112 ~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq  187 (286)
T PRK14275        112 FTDEVLLRKKIGM-VFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ  187 (286)
T ss_pred             ccchHHhhhcEEE-ECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence                   112333 4554432 22  266666655333223211 11123345666666652      356678999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  227 (286)
T PRK14275        188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE  227 (286)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.2e-29  Score=227.69  Aligned_cols=159  Identities=10%  Similarity=0.101  Sum_probs=121.5

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------------C
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P  148 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------------~  148 (255)
                      ||+|.|++..     + ++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...            +
T Consensus         4 ~l~~~~~~~~-----~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGDFS-----L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECCEE-----E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            7899997632     3 8999999999999999999999999999999998   99999 4555321            1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. +.++.. ++ ..+++.++..+.....  ........+.++++.+++.  .+.++..||+||+||+++|++|+.+
T Consensus        75 ~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        75 RRIGY-VFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             CCeEE-EecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            12343 555432 22 2367777765433211  1111233467888888886  3667789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++||+||||++||+..++.+.++|.+.
T Consensus       150 p~lllLDEPts~LD~~~~~~l~~~L~~l  177 (354)
T TIGR02142       150 PRLLLMDEPLAALDDPRKYEILPYLERL  177 (354)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999998753

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=3.4e-29  Score=235.52  Aligned_cols=163  Identities=10%  Similarity=-0.028  Sum_probs=120.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~------  148 (255)
                      .+|+++|+++.|++..    +|+++||++++|++++|+||||||||||+|+|+|++.   |++|++ +++....      
T Consensus         2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~   74 (490)
T PRK10938          2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ   74 (490)
T ss_pred             ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence            4799999999998643    6799999999999999999999999999999999997   999984 4442211      


Q ss_pred             --CCeeEEEecCCCC-CcCc-----cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256          149 --PDVATVLPMDGFH-LYLS-----QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 --~~~g~~i~~d~~~-~~~~-----~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (255)
                        ...+. +.++... ....     .+++.++       .... ......+.++++.+++.  .+.++..||+||+||++
T Consensus        75 ~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  145 (490)
T PRK10938         75 LQKLVSD-EWQRNNTDMLSPGEDDTGRTTAEI-------IQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL  145 (490)
T ss_pred             HHHHhce-eccCcchhhcccchhhccccHHHh-------cccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence              11232 3332110 0000     0111111       1001 11234567788888875  36778899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  181 (490)
T PRK10938        146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL  181 (490)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998763

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=3.1e-29  Score=232.29  Aligned_cols=179  Identities=16%  Similarity=0.192  Sum_probs=138.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc-ccCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~-~~~~~~~------  147 (255)
                      ++++++||++.|......+.+++||||++.+||++||+|.|||||||+++.|.|++... ...+|+ .+++...      
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            48999999999986544556889999999999999999999999999999999999521 112577 4666321      


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC-CCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv  217 (255)
                           +.....+++++.+...++.+++.+.+.......+ ...+.......++++.+++..    +.++++|||||+||+
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                 2334445888887666554555444444333332 233445566788999998862    348889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|+||+.+|++||+||||.+||+..+.+|.++|...
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l  200 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL  200 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999764

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.96  E-value=2.3e-29  Score=204.50  Aligned_cols=135  Identities=16%  Similarity=0.112  Sum_probs=103.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEe
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~  156 (255)
                      ++++++++.|++. +.  +++++||++++|++++|+||||||||||+++|+|+++   |++|++ +++.   ...+. +.
T Consensus         1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~   70 (166)
T cd03223           1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP   70 (166)
T ss_pred             CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence            4678999999642 12  6799999999999999999999999999999999996   777763 3321   12222 33


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      ++... +  ..                         ++.+++.+.   ....||+||+||+++|++++.+|+++|+||||
T Consensus        71 q~~~~-~--~~-------------------------tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          71 QRPYL-P--LG-------------------------TLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCCcc-c--cc-------------------------cHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            32211 0  01                         222332221   45789999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++.+.+++.+
T Consensus       120 ~~LD~~~~~~l~~~l~~  136 (166)
T cd03223         120 SALDEESEDRLYQLLKE  136 (166)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999998875

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-29  Score=219.19  Aligned_cols=169  Identities=12%  Similarity=0.088  Sum_probs=122.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus        19 ~~~l~i~nl~~~~~~~~----il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         19 APAMAAVNLTLGFAGKT----VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             CcEEEEeeEEEEECCEE----EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence            35799999999998643    6799999999999999999999999999999999986   5     5888 4555321 


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC------CCCCCCCCCcc
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (255)
                              +...+. ++++.. ++.  .++.++.......... ..........+.++.+++.      .+..+..||+|
T Consensus        92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG  167 (276)
T PRK14271         92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG  167 (276)
T ss_pred             ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence                    112333 444432 221  3555555432211111 1111112235566777664      23556799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|++||+||||++||+.+++.+.++|.+.
T Consensus       168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  209 (276)
T PRK14271        168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL  209 (276)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988753

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=1e-29  Score=211.18  Aligned_cols=151  Identities=14%  Similarity=0.109  Sum_probs=104.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ..++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|+.. ..|++|             . +
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G-------------~-i   66 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITG-------------E-I   66 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcce-------------E-E
Confidence            368899999999752111126799999999999999999999999999999999852 003444             4 3


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      .+++..+.          .......++ ++........++.+++.+....  ..||+||+||+++|++++.+|+++|+||
T Consensus        67 ~~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllDE  134 (192)
T cd03232          67 LINGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLDE  134 (192)
T ss_pred             EECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEeC
Confidence            44443211          011112222 2222111112333333221111  1899999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHh
Q 025256          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++||+.+++.+.+++.+
T Consensus       135 P~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232         135 PTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             CCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.96  E-value=8.1e-29  Score=213.88  Aligned_cols=170  Identities=17%  Similarity=0.132  Sum_probs=119.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCcc-ccCCCCCC----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP----  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~~~~~~----  148 (255)
                      +++++++|++.|++..    +|+++||++++|++++|+||||||||||+++|+|+  ++   |++|+ .+++....    
T Consensus         6 ~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~   78 (252)
T CHL00131          6 PILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP   78 (252)
T ss_pred             ceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence            4799999999998643    77999999999999999999999999999999997  44   89998 45553211    


Q ss_pred             ---CCeeE-EEecCCCCCcCccCCcccChHHHHHhc----CCCCCC---cHHHHHHHHHhhcCC---CCCCCC-CCCccc
Q 025256          149 ---PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQ---GSVYAP-SFDHGV  213 (255)
Q Consensus       149 ---~~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~~----g~~~~~---~~~~~~~~l~~l~l~---~~~~~~-~lS~G~  213 (255)
                         ...+. ++.++... + ..++..++........    +.....   ....+.++++.+++.   .+..+. .||+||
T Consensus        79 ~~~~~~~~~~~~q~~~~-~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~  156 (252)
T CHL00131         79 EERAHLGIFLAFQYPIE-I-PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE  156 (252)
T ss_pred             hhhheeeEEEEeccccc-c-ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence               11121 23333221 1 1133333332211110    011000   113346677887775   244555 499999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  197 (252)
T CHL00131        157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL  197 (252)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=1.7e-29  Score=213.85  Aligned_cols=162  Identities=15%  Similarity=0.142  Sum_probs=116.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++..  ..+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         3 l~~~~l~~~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQE--IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            68899999997521  126799999999999999999999999999999999997   99999 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--C-----------CCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-----------~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++...     ... ......+.++++.+++..  +           ..+..||+||+|
T Consensus        78 ~~i~~-~~q~~~~-~~--~tv~e~l~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q  147 (220)
T cd03245          78 RNIGY-VPQDVTL-FY--GTLRDNITL-----GAP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ  147 (220)
T ss_pred             hhEEE-eCCCCcc-cc--chHHHHhhc-----CCC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence            12333 4444322 11  233332211     111 112334445555555431  1           134589999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+..++.+.++|.+.
T Consensus       148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  186 (220)
T cd03245         148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL  186 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998763

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.96  E-value=4.2e-29  Score=207.92  Aligned_cols=150  Identities=16%  Similarity=0.118  Sum_probs=104.0

Q ss_pred             eEEEccceeeccccc--cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCccccCCCCCCCCee
Q 025256           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPDVA  152 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~--~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~~~~~~~~~~~~g  152 (255)
                      .+++++|++.|++..  ....+++++||++++|++++|+||||||||||+++|+|++  +   |++|+            
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~------------   67 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGE------------   67 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceE------------
Confidence            478999999997520  0112779999999999999999999999999999999998  6   77776            


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                        +.++|..+..         ...+...++ ++........++.+++.+....  ..||+||+||+++|++++.+|+++|
T Consensus        68 --i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~--~~LS~G~~qrv~laral~~~p~ill  134 (194)
T cd03213          68 --VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAKL--RGLSGGERKRVSIALELVSNPSLLF  134 (194)
T ss_pred             --EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHcCCCEEE
Confidence              2233321110         000111111 1111111111222222211111  1899999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHhh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||+..++.+.++|.+.
T Consensus       135 lDEP~~~LD~~~~~~l~~~l~~~  157 (194)
T cd03213         135 LDEPTSGLDSSSALQVMSLLRRL  157 (194)
T ss_pred             EeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998763

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.5e-29  Score=215.48  Aligned_cols=171  Identities=14%  Similarity=0.101  Sum_probs=124.1

Q ss_pred             cCccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCC
Q 025256           72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQ  145 (255)
Q Consensus        72 ~~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~  145 (255)
                      +....+|+++|+++.|++..    +++++||+|++|++++|+|+||||||||+++|+|++.   |     ++|+ .+++.
T Consensus        11 ~~~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~   83 (265)
T PRK14252         11 SPTQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPD   83 (265)
T ss_pred             cCCCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCc
Confidence            33456799999999998643    7799999999999999999999999999999999985   4     6888 45542


Q ss_pred             CC------------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCC
Q 025256          146 VK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYA  206 (255)
Q Consensus       146 ~~------------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~  206 (255)
                      ..            ....+. +.++... +.  .++.++........+... ..........++.+++.      .+..+
T Consensus        84 ~~~~~~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~  159 (265)
T PRK14252         84 NVNILSPEVDPIEVRMRISM-VFQKPNP-FP--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLA  159 (265)
T ss_pred             cccccccccCHHHHhccEEE-EccCCcC-Cc--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCc
Confidence            11            112233 4444332 21  255555544322223211 11123445666666542      24567


Q ss_pred             CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..||+||+||+++|++++.+|+++|+||||++||+.+++.+.++|.+
T Consensus       160 ~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  206 (265)
T PRK14252        160 FNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD  206 (265)
T ss_pred             ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999875

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.96  E-value=3.2e-29  Score=237.70  Aligned_cols=173  Identities=15%  Similarity=0.203  Sum_probs=128.7

Q ss_pred             ceEEEccceeeccccc-------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC
Q 025256           76 PVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~-------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~  147 (255)
                      ++++++|+++.|+...       ....+|+++||+|++|++++|+||||||||||+|+|+|++    |++|+ .+++...
T Consensus       274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~i  349 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQPL  349 (529)
T ss_pred             CcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEEc
Confidence            5799999999996210       0112679999999999999999999999999999999998    78999 4655321


Q ss_pred             -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC--CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCc
Q 025256          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (255)
                                 +...+. ++++........+++.++..+.....+  .........+.++++.+++.   .+.++..|||
T Consensus       350 ~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  428 (529)
T PRK15134        350 HNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSG  428 (529)
T ss_pred             cccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence                       112344 565532111123577776655322221  11111234567888888885   3667889999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999975

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.96  E-value=4.7e-29  Score=236.15  Aligned_cols=172  Identities=17%  Similarity=0.216  Sum_probs=127.6

Q ss_pred             cceEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccC-CCC----C
Q 025256           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----K  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~-~~~----~  147 (255)
                      .++++++||++.|++. .....+++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++ +..    .
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~  353 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT  353 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence            3579999999999531 011126799999999999999999999999999999999997   99999 453 321    0


Q ss_pred             ----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------CCCCCCCC
Q 025256          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFD  210 (255)
Q Consensus       148 ----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS  210 (255)
                                +...+. +.++... + ..+++.++...... .+.+.......+.++++.+++..       +.++..||
T Consensus       354 ~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS  429 (520)
T TIGR03269       354 KPGPDGRGRAKRYIGI-LHQEYDL-Y-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS  429 (520)
T ss_pred             ccchhhHHHHhhhEEE-EccCccc-C-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence                      112344 5554322 2 23566666654221 12221112234567888888853       56778999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||+++|++|+.+|++||+||||++||+..++++.++|.+
T Consensus       430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~  472 (520)
T TIGR03269       430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK  472 (520)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=3.8e-29  Score=213.31  Aligned_cols=154  Identities=17%  Similarity=0.146  Sum_probs=113.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCcc-ccCCCCCC------CCeeEEEecCCCCCcC
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVKP------PDVATVLPMDGFHLYL  164 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p----~~G~-~~~~~~~~------~~~g~~i~~d~~~~~~  164 (255)
                      +++++||++++|++++|+||||||||||+++|+|+++   |    ++|+ .+++....      ...+. +.++......
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~   76 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN   76 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence            4699999999999999999999999999999999997   7    8999 45553211      12333 5555421122


Q ss_pred             ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCC
Q 025256          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~L  239 (255)
                      ..+++.++........+.........+.++++.+++.     .+..+..||+||+||+++|++++.+|+++|+||||++|
T Consensus        77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L  156 (230)
T TIGR02770        77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL  156 (230)
T ss_pred             cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            2244444443332223322222234467888888875     35667799999999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHh
Q 025256          240 DGGVWKDVSSMFDE  253 (255)
Q Consensus       240 D~~~~~~l~~ll~~  253 (255)
                      |+..++.+.+++.+
T Consensus       157 D~~~~~~l~~~l~~  170 (230)
T TIGR02770       157 DVVNQARVLKLLRE  170 (230)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.6e-29  Score=235.92  Aligned_cols=167  Identities=16%  Similarity=0.164  Sum_probs=124.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCcc-ccCCCCC------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p--~~G~-~~~~~~~------  147 (255)
                      +++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |  ++|+ .+++...      
T Consensus         1 ~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGGVK----ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCCeE----eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            478999999998643    6799999999999999999999999999999999985   5  7899 4555321      


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhc--C--CCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv  217 (255)
                         +...+. ++++....  ..+++.++..+.....  +  .........+.++++.+++..   +..+..||+||+||+
T Consensus        74 ~~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  150 (500)
T TIGR02633        74 DTERAGIVI-IHQELTLV--PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV  150 (500)
T ss_pred             HHHhCCEEE-EeeccccC--CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence               122444 55543221  2256666554322111  0  111111234577888888763   345779999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus       151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (500)
T TIGR02633       151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD  186 (500)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=9.4e-29  Score=235.78  Aligned_cols=166  Identities=16%  Similarity=0.078  Sum_probs=126.2

Q ss_pred             cceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee
Q 025256           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA  152 (255)
Q Consensus        75 ~~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g  152 (255)
                      +++|+++||++.|+ +..    +|+++||+|++|++++|+||||||||||+++|+|++.   |++|++ ++..   ...|
T Consensus         4 ~~~l~i~~l~~~y~~~~~----il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~   73 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKKQ----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG   73 (556)
T ss_pred             cEEEEEeeEEEEeCCCCe----eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence            35899999999998 533    6799999999999999999999999999999999997   999994 4431   2345


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHh--------------cCCCCC---------------------C-cHHHHHHHHH
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------F-NPLLLLNCLK  196 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~---------------------~-~~~~~~~~l~  196 (255)
                      . ++++....  ..+++.++..+....              ......                     + ....+.++++
T Consensus        74 ~-v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  150 (556)
T PRK11819         74 Y-LPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD  150 (556)
T ss_pred             E-EecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            4 56654322  235676666542110              011100                     0 1234566777


Q ss_pred             hhcCC-CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       197 ~l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+++. .+..+..|||||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       151 ~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        151 ALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             hCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence            77774 3567789999999999999999999999999999999999999999998875

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.96  E-value=1.3e-28  Score=212.11  Aligned_cols=167  Identities=16%  Similarity=0.082  Sum_probs=115.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC-----
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|++  +   |++|+ .+++....     
T Consensus         1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~   73 (248)
T PRK09580          1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE   73 (248)
T ss_pred             CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence            478999999998643    679999999999999999999999999999999994  5   89998 45553211     


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhc-CC-C-CCCc----HHHHHHHHHhhcCC---CCCCCC-CCCccc
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-P-WTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV  213 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~-~-~~~~----~~~~~~~l~~l~l~---~~~~~~-~lS~G~  213 (255)
                          ...+. +.++.....  .++............ .. . ...+    ...+.+.++.+++.   ....+. .||+||
T Consensus        74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  150 (248)
T PRK09580         74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  150 (248)
T ss_pred             HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence                11222 333332111  011111111110000 00 0 0011    12345666766663   233343 799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  190 (248)
T PRK09580        151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS  190 (248)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.96  E-value=1.9e-29  Score=214.41  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=119.8

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      ..++++++++++.|++.. ...+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...     
T Consensus         8 ~~~~l~~~~l~~~~~~~~-~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~   83 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRP-DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH   83 (226)
T ss_pred             cCceEEEEEEEEEeCCCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence            456799999999997521 1126799999999999999999999999999999999997   99998 4555321     


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH--H-----HHHHHHHhh--cCC--CCCCCCCCCccc
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP--L-----LLLNCLKNL--RNQ--GSVYAPSFDHGV  213 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~--~-----~~~~~l~~l--~l~--~~~~~~~lS~G~  213 (255)
                         ....+. +.++... +.  .++.++..+...    ......  .     ...++++.+  ++.  .+.++..||+||
T Consensus        84 ~~~~~~i~~-~~q~~~l-~~--~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~  155 (226)
T cd03248          84 KYLHSKVSL-VGQEPVL-FA--RSLQDNIAYGLQ----SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQ  155 (226)
T ss_pred             HHHHhhEEE-EecccHH-Hh--hhHHHHhccccC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHH
Confidence               112333 4444321 11  233333321100    000000  0     123455555  333  355677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus       156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  195 (226)
T cd03248         156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD  195 (226)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.96  E-value=3.2e-29  Score=209.52  Aligned_cols=148  Identities=17%  Similarity=0.101  Sum_probs=103.8

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+.. ..|++|             . +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~p~~G-------------~-i~~   61 (200)
T cd03217           1 LEIKDLHVSVGGKE----ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEG-------------E-ILF   61 (200)
T ss_pred             CeEEEEEEEeCCEE----eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCcc-------------E-EEE
Confidence            46889999998643    7799999999999999999999999999999999941 015555             4 444


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      +|..+..  ..   .....+...++ ++........++.+++    ......||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEPt  132 (200)
T cd03217          62 KGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPD  132 (200)
T ss_pred             CCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence            5443211  00   00011111222 3322211112222322    1222489999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+.+++++.+++.+
T Consensus       133 ~~LD~~~~~~l~~~L~~  149 (200)
T cd03217         133 SGLDIDALRLVAEVINK  149 (200)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=212.63  Aligned_cols=171  Identities=13%  Similarity=0.112  Sum_probs=123.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCCC---
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVKP---  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~~---  148 (255)
                      |.+++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|++..  ..|++|+ .+++....   
T Consensus         1 ~~~l~~~~v~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~   76 (250)
T PRK14266          1 MYRIEVENLNTYFDDAH----ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA   76 (250)
T ss_pred             CcEEEEEeEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence            45689999999998633    67999999999999999999999999999999998631  1138898 45553221   


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC-CCcHHHHHHHHHhhcCC------CCCCCCCCCcccc
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (255)
                             ...+. ++++... +.  .++.++........+... ......+.+.++.+++.      .+..+..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~  152 (250)
T PRK14266         77 VDVVELRKKVGM-VFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ  152 (250)
T ss_pred             ccHHHHhhheEE-EecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence                   12333 5554332 22  255555543322222111 11123345566666552      3456779999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.96  E-value=1.3e-28  Score=208.62  Aligned_cols=161  Identities=14%  Similarity=0.119  Sum_probs=117.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...        .
T Consensus         3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            6889999999753212  6799999999999999999999999999999999997   99998 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++...       ..........+.++.+++.             ....+..||+||+|
T Consensus        78 ~~i~~-~~q~~~l-~~--~tv~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q  146 (221)
T cd03244          78 SRISI-IPQDPVL-FS--GTIRSNLDP-------FGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ  146 (221)
T ss_pred             hhEEE-ECCCCcc-cc--chHHHHhCc-------CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence            12333 4444332 21  244333321       1112223344444444332             12466799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (221)
T cd03244         147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA  185 (221)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=1.1e-28  Score=194.96  Aligned_cols=168  Identities=19%  Similarity=0.208  Sum_probs=135.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC-----CC---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK---  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~-----~~---  147 (255)
                      .|+++++.+.||..+    +|-||+|+-++|+.+.++||||+|||||+|.|.-+.-   |.+|+ .+.++     ..   
T Consensus         2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~   74 (242)
T COG4161           2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence            378999999999977    8899999999999999999999999999999998876   99998 33221     11   


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (255)
                            +.+.|. ++ ..|+++ +.+++.+|..+.. +..|++.+.......++++++.+.  .+..+-.|||||+|||+
T Consensus        75 k~i~~lr~~vgm-vf-qqy~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva  151 (242)
T COG4161          75 KAIRDLRRNVGM-VF-QQYNLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA  151 (242)
T ss_pred             HHHHHHHHhhhh-hh-hhhccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence                  234454 32 234443 3478777765543 346677666677788899988876  56677799999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||+++|+++++||||+.|||+-..++.++|.+.
T Consensus       152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel  187 (242)
T COG4161         152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL  187 (242)
T ss_pred             HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999874

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=213.77  Aligned_cols=168  Identities=14%  Similarity=0.090  Sum_probs=126.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .+.+.++++++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.   |     ++|+ .+++... 
T Consensus         6 ~~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             CceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEecc
Confidence            35688999999998744    7799999999999999999999999999999999996   5     6888 4555321 


Q ss_pred             ---------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC------CCCCCCCCcc
Q 025256          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHG  212 (255)
Q Consensus       148 ---------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~------~~~~~~lS~G  212 (255)
                               +...+. ++++...+   .+++.++..+.....+.. ......+.++++.+++..      +..+..||+|
T Consensus        79 ~~~~~~~~~~~~i~~-v~q~~~~~---~~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  153 (261)
T PRK14263         79 GKGVDPVVVRRYIGM-VFQQPNPF---SMSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG  153 (261)
T ss_pred             ccccchHhhhhceEE-EecCCccc---cccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence                     112333 55554322   156666665443222221 112245667777777642      3456689999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|++||+||||++||+..++++.++|.+.
T Consensus       154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~  195 (261)
T PRK14263        154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL  195 (261)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999763

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=1.5e-29  Score=216.49  Aligned_cols=162  Identities=14%  Similarity=0.146  Sum_probs=115.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++...  .+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 i~~~~l~~~~~~~~~--~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDGP--VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCCc--cceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            468899999974211  26799999999999999999999999999999999997   99999 4665321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhhcCC----CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQ----GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~----~~~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++.....     . .......         .++++.+..+    .+.++..||+||+|
T Consensus        76 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q  145 (237)
T cd03252          76 RQVGV-VLQENVL-FN--RSIRDNIALAD-----P-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ  145 (237)
T ss_pred             hcEEE-EcCCchh-cc--chHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence            12333 4554332 21  34444432210     1 0111111         2223333111    23467799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  184 (237)
T cd03252         146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI  184 (237)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1e-28  Score=234.32  Aligned_cols=162  Identities=12%  Similarity=0.114  Sum_probs=125.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|++ +++.   ...|. 
T Consensus       318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~-  386 (530)
T PRK15064        318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY-  386 (530)
T ss_pred             ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence            4799999999998643    6799999999999999999999999999999999997   999994 5542   23444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +.++........+++.++...    +.. .......+.++++.+++.   .+.++..||+||+||+++|++++.+|++||
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~~----~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll  461 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMSQ----WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV  461 (530)
T ss_pred             EcccccccCCCCCcHHHHHHH----hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            555432111122454443321    111 112334567888888873   467788999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.+++.+.++|.+
T Consensus       462 LDEPt~~LD~~~~~~l~~~l~~  483 (530)
T PRK15064        462 MDEPTNHMDMESIESLNMALEK  483 (530)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998865

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=1.8e-28  Score=213.35  Aligned_cols=166  Identities=13%  Similarity=0.151  Sum_probs=117.9

Q ss_pred             eEEEccceeecccc----------------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           77 VVEARCMDEVYDAL----------------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        77 ~l~i~~lsk~y~~~----------------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .++++||+|.|...                .....+++++||+|++|++++|+||||||||||+++|+|++.   |++|+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~   80 (264)
T PRK13546          4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGK   80 (264)
T ss_pred             eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceE
Confidence            46777777777542                012347799999999999999999999999999999999997   88888


Q ss_pred             -ccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256          141 -SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       141 -~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv  217 (255)
                       .+++..     +. +.+...  ....+++.++........+............+++.+++.  .+..+..||+||+||+
T Consensus        81 I~~~g~~-----~~-~~~~~~--~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv  152 (264)
T PRK13546         81 VDRNGEV-----SV-IAISAG--LSGQLTGIENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKL  152 (264)
T ss_pred             EEECCEE-----eE-EecccC--CCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHH
Confidence             344421     11 222211  112245555554332222322111122234566666655  3456779999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       153 ~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~  188 (264)
T PRK13546        153 GFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYE  188 (264)
T ss_pred             HHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998865

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=1.4e-28  Score=209.43  Aligned_cols=161  Identities=19%  Similarity=0.216  Sum_probs=113.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++. ..  +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...        .
T Consensus         3 l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (229)
T cd03254           3 IEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSLR   76 (229)
T ss_pred             EEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHHh
Confidence            7899999999742 12  6799999999999999999999999999999999997   89998 4555221        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC-----------C--CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++...     ... ......+...++.+++           .  ....+..||+||+|
T Consensus        77 ~~i~~-~~q~~~~-~~--~tv~~~~~~-----~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~  146 (229)
T cd03254          77 SMIGV-VLQDTFL-FS--GTIMENIRL-----GRP-NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQ  146 (229)
T ss_pred             hhEEE-ecCCchh-hh--hHHHHHHhc-----cCC-CCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHH
Confidence            11233 4443321 11  133332211     111 1112222333332221           1  23446799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+..++.+.+++.+.
T Consensus       147 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (229)
T cd03254         147 LLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL  185 (229)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=1.7e-28  Score=208.74  Aligned_cols=174  Identities=17%  Similarity=0.126  Sum_probs=123.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~  150 (255)
                      ++.++||++.|.+......+++++||++++|++++|+||||||||||+|+|+|++....|++|+ .+++...     +..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            4678999999965310122679999999999999999999999999999999998311147898 4555321     122


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCC---CCCcHHHHHH-HHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~---~~~~~~~~~~-~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      .+. ++++....  ..+++.++..+........   .......... .++.+++.  .+..+..||+||+||+++|++++
T Consensus        83 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          83 VAY-VRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             EEE-eCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence            333 45443322  2357777766543222111   1111112233 67766665  34567899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.+++.+.+++.+
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=2.5e-29  Score=204.25  Aligned_cols=169  Identities=14%  Similarity=0.169  Sum_probs=124.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC-----
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD-----  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~-----  150 (255)
                      |++++||+|.|++..    +++++|++|++|.+++|+|||||||||||.+++.+++   +++|+ .+++......     
T Consensus         1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L   73 (252)
T COG4604           1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL   73 (252)
T ss_pred             CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence            588999999999865    7799999999999999999999999999999999997   77776 3444221110     


Q ss_pred             --eeEEEecCCCCCcCccCCcccChHHHHH--hcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          151 --VATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       151 --~g~~i~~d~~~~~~~~l~~~e~~~~~~~--~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                        .-.++.+.+..  ...+++.+...+.+.  -.|-+-..+...+.+.++.+.+.  .+.+..+|||||+||..+|..++
T Consensus        74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla  151 (252)
T COG4604          74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA  151 (252)
T ss_pred             HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence              00111121111  112344333322211  11223344566678888888876  57889999999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.+.++||||.+.||..+..++++++...
T Consensus       152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl  181 (252)
T COG4604         152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRL  181 (252)
T ss_pred             ccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999888653

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.96  E-value=2.3e-28  Score=204.80  Aligned_cols=156  Identities=14%  Similarity=0.113  Sum_probs=111.2

Q ss_pred             EEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEE
Q 025256           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (255)
Q Consensus        78 l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (255)
                      ++++||++.|++..+ ...+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++     ..+. +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~-~   71 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY-V   71 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE-E
Confidence            468999999976310 0126799999999999999999999999999999999997   99998 4554     2343 4


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------C----CCCCCCCCCccccchhhhhhh
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~~a~~  222 (255)
                      .++.....   .++.++..+       ...+........++.+++         +    .......||+||+||+++|++
T Consensus        72 ~q~~~l~~---~t~~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara  141 (204)
T cd03250          72 SQEPWIQN---GTIRENILF-------GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA  141 (204)
T ss_pred             ecCchhcc---CcHHHHhcc-------CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence            55543221   344443322       111112222222222221         1    234467899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHH-HHH
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD  252 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~-ll~  252 (255)
                      ++.+|+++|+|||+++||+..++.+.+ ++.
T Consensus       142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~  172 (204)
T cd03250         142 VYSDADIYLLDDPLSAVDAHVGRHIFENCIL  172 (204)
T ss_pred             HhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998887 444

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=8.5e-29  Score=233.70  Aligned_cols=173  Identities=15%  Similarity=0.163  Sum_probs=126.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~------  147 (255)
                      ++++++||++.|+.... ..+++++||+|++|++++|+||||||||||+|+|+|+++   | ++|+ .+++...      
T Consensus       258 ~~l~~~~l~~~~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~~  333 (506)
T PRK13549        258 VILEVRNLTAWDPVNPH-IKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNPQ  333 (506)
T ss_pred             ceEEEecCccccccccc-cccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCHH
Confidence            47999999999942101 126799999999999999999999999999999999985   5 8999 4555321      


Q ss_pred             ---CCCeeEEEecCCC-CCcCccCCcccChHHHHH-hc-CC---CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256          148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-GA---PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 ---~~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~-~~-g~---~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (255)
                         ....+. +.++.. ......+++.++...... .+ +.   ........+.++++.+++.   .+.++..|||||+|
T Consensus       334 ~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq  412 (506)
T PRK13549        334 QAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ  412 (506)
T ss_pred             HHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence               112444 555431 011123566665543211 11 10   1111223467888888884   35677899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+.+++++.++|.+
T Consensus       413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  450 (506)
T PRK13549        413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ  450 (506)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.96  E-value=7.8e-29  Score=211.47  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=113.2

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEEEecCCCCCcCccCCcccC
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED  172 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~d~~~~~~~~l~~~e~  172 (255)
                      ++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....+. +.++....  ..+++.++
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~--~~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLL--PWLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccC--CCCCHHHH
Confidence            479999999999999999999999999999999997   99999 4655322   122343 55543322  22566666


Q ss_pred             hHHHHHh-c-CCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256          173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       173 ~~~~~~~-~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~  248 (255)
                      ....... . +.........+.++++.+++.  .+..+..||+||+||+++|++++.+|++||+||||++||+.+++++.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            6543211 1 111111223456778887775  35667799999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 025256          249 SMFDE  253 (255)
Q Consensus       249 ~ll~~  253 (255)
                      ++|.+
T Consensus       155 ~~l~~  159 (230)
T TIGR01184       155 EELMQ  159 (230)
T ss_pred             HHHHH
Confidence            99875

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=9.1e-29  Score=258.10  Aligned_cols=171  Identities=15%  Similarity=0.081  Sum_probs=136.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||+|.|++.  ...+++++||+|++||++||+||||||||||+|+|+|++.   |++|+ .++|...       
T Consensus      1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred             ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence            479999999999852  1227899999999999999999999999999999999998   99999 4555322       


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      +...|. +.++....  ..+++.|+.......++++.......+.++++.+++.  .+.++..||||||||+++|+||+.
T Consensus      2011 r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257      2011 HQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred             hhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            223555 55544322  2378888887665556664433334556788888876  467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+|||+||||+|||+..++.++++|.+.
T Consensus      2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257      2088 CPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.4e-28  Score=212.33  Aligned_cols=168  Identities=12%  Similarity=0.074  Sum_probs=121.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc-c-CCCCcc-ccCCCCC-------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-I-WPQKAS-SFDSQVK-------  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~-~-~p~~G~-~~~~~~~-------  147 (255)
                      -+++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+... . .|++|+ .+++...       
T Consensus         6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            46889999997643    67999999999999999999999999999999999730 0 136898 4555321       


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC--CcHHHHHHHHHhhcCCC------CCCCCCCCccccch
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP  216 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~~------~~~~~~lS~G~~qr  216 (255)
                         +...+. ++++...+.   .++.++..+.....+....  .....+.++++.+++..      +..+..||+||+||
T Consensus        82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  157 (251)
T PRK14244         82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR  157 (251)
T ss_pred             HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence               112333 555543222   2555555443222222111  11233567788887742      34667999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=215.57  Aligned_cols=173  Identities=16%  Similarity=0.116  Sum_probs=125.3

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCcc-ccCCCCC---
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~--~~p~~G~-~~~~~~~---  147 (255)
                      +.++|+++||++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++.  .+|++|+ .+++...   
T Consensus        42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~  117 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD  117 (305)
T ss_pred             CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            345799999999998743    77999999999999999999999999999999999841  1258998 4555321   


Q ss_pred             -------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcC------------CC-CCCcHHHHHHHHHhhcCC------
Q 025256          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------AP-WTFNPLLLLNCLKNLRNQ------  201 (255)
Q Consensus       148 -------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g------------~~-~~~~~~~~~~~l~~l~l~------  201 (255)
                             +...+. +.++.. ++.  .++.++..+.....+            .. .......+.++++.+++.      
T Consensus       118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  193 (305)
T PRK14264        118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR  193 (305)
T ss_pred             cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence                   112333 444432 222  356565554322111            00 011123456667777653      


Q ss_pred             CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.++..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~  246 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL  246 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            24567799999999999999999999999999999999999999999998753

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.8e-28  Score=232.75  Aligned_cols=164  Identities=14%  Similarity=0.124  Sum_probs=122.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i  155 (255)
                      ||+++|+++.|++..    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|++ +++.   ...+. +
T Consensus         1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~   69 (530)
T PRK15064          1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L   69 (530)
T ss_pred             CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence            488999999998643    6799999999999999999999999999999999997   999994 5542   23444 5


Q ss_pred             ecCCCCCcCccCCcccChHHHHH-----------hcCCCC---------------------CCcHHHHHHHHHhhcCCC-
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG-  202 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~l~~-  202 (255)
                      .++... + ..+++.++......           ..+.+.                     ......+.++++.+++.. 
T Consensus        70 ~q~~~~-~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  147 (530)
T PRK15064         70 RQDQFA-F-EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE  147 (530)
T ss_pred             eccCCc-C-CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence            554322 1 22455554432110           001000                     001234567888888853 


Q ss_pred             --CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 --~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                        +..+..||+||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence              346789999999999999999999999999999999999999999998854

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=233.74  Aligned_cols=168  Identities=13%  Similarity=0.080  Sum_probs=124.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++.|+.      +++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus       264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~  334 (510)
T PRK09700        264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD  334 (510)
T ss_pred             cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence            47999999997642      6799999999999999999999999999999999997   99999 46553211      


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHHh----c----CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~----~----g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (255)
                         ...+. ++++.. ......+++.++.......    .    +. ........+.++++.+++.   .+.++..||||
T Consensus       335 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG  413 (510)
T PRK09700        335 AVKKGMAY-ITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGG  413 (510)
T ss_pred             HHHCCcEE-ccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChH
Confidence               12344 555421 1111235665554332110    0    11 0011123456788888884   35677899999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       414 q~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  454 (510)
T PRK09700        414 NQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ  454 (510)
T ss_pred             HHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999975

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.9e-29  Score=233.48  Aligned_cols=164  Identities=14%  Similarity=0.086  Sum_probs=122.8

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------C
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------P  149 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---------~  149 (255)
                      ++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....         .
T Consensus         1 ~~nl~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPGVK----ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCCEE----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            468999998643    6799999999999999999999999999999999997   99999 46663221         2


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHH-hcCC--CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      ..+. +.++....  ..+++.++..+... ..+.  ........+.++++.+++.  .+.++..||+||+||+++|++++
T Consensus        74 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982         74 GISM-VHQELNLV--LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             CEEE-Eecccccc--cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence            2444 55554322  22566665543211 0111  1111123456778888775  35667899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+..++.+.++|.+
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~  179 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK  179 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.95  E-value=4.5e-28  Score=203.43  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=117.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..++++++++.|+....  .+++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...       
T Consensus         5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            35899999999975211  26799999999999999999999999999999999997   99999 4555321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccC
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                       ....+. +.++... +.  .++.++...       ........+.+.++     .+.++..||+||+||+++|++++.+
T Consensus        80 ~~~~i~~-v~q~~~~-~~--~tv~~~l~~-------~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~  143 (207)
T cd03369          80 LRSSLTI-IPQDPTL-FS--GTIRSNLDP-------FDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR  143 (207)
T ss_pred             HHhhEEE-EecCCcc-cC--ccHHHHhcc-------cCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence             122343 4554422 21  244443321       11122233333333     3466789999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+||||++||+..++.+.++|.+.
T Consensus       144 p~llllDEP~~~LD~~~~~~l~~~l~~~  171 (207)
T cd03369         144 PRVLVLDEATASIDYATDALIQKTIREE  171 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=3.2e-29  Score=198.89  Aligned_cols=166  Identities=14%  Similarity=0.120  Sum_probs=123.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC-----
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD-----  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~-----  150 (255)
                      .++++++.+.-++..    +|+++||++++||+++|+||||||||||+|+++-++.   |++|+ .|.|+.+..-     
T Consensus         3 lle~kq~~y~a~~a~----il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~   75 (223)
T COG4619           3 LLELKQVGYLAGDAK----ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY   75 (223)
T ss_pred             chHHHHHHhhcCCCe----eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence            466677766666543    6799999999999999999999999999999999998   89998 4666432110     


Q ss_pred             --eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhcc
Q 025256          151 --VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       151 --~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                        ...++.+..-.+.   -++.+|..+......  ..++...+...++++.++   ....+-.||||++||++++|.|..
T Consensus        76 Rq~VsY~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~  150 (223)
T COG4619          76 RQQVSYCAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQF  150 (223)
T ss_pred             HHHHHHHHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhc
Confidence              0011111111111   134444433222221  234677888999999987   467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      -|+||+|||||+.||+.+.+.+-++|+.-
T Consensus       151 ~P~ILLLDE~TsALD~~nkr~ie~mi~~~  179 (223)
T COG4619         151 MPKILLLDEITSALDESNKRNIEEMIHRY  179 (223)
T ss_pred             CCceEEecCchhhcChhhHHHHHHHHHHH
Confidence            99999999999999999999999998753

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.95  E-value=3.4e-29  Score=213.90  Aligned_cols=162  Identities=16%  Similarity=0.142  Sum_probs=115.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++....  +++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...        .
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            4688999999763112  6799999999999999999999999999999999997   99999 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhh--cCC--CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++.....     . .......         .+.++.+  ++.  .+..+..||+||+|
T Consensus        76 ~~i~~-~~q~~~~-~~--~tv~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q  145 (234)
T cd03251          76 RQIGL-VSQDVFL-FN--DTVAENIAYGR-----P-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ  145 (234)
T ss_pred             hhEEE-eCCCCee-cc--ccHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence            12333 4444322 21  24444332211     1 1111111         2333333  122  24456799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  184 (234)
T cd03251         146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERL  184 (234)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.95  E-value=1.5e-28  Score=228.54  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=122.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|++.. ...+|+++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...     . 
T Consensus        20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~-   89 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L-   89 (549)
T ss_pred             ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence            4689999999997742 1236799999999999999999999999999999999997   88998 3544221     1 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      +.+...  ....+++.++..+.....+............+++.+++.  .+..+..||+||+||+++|++|+.+|++||+
T Consensus        90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL  167 (549)
T PRK13545         90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI  167 (549)
T ss_pred             EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            111111  112256666554432222322111122345677777775  3567789999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHHh
Q 025256          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 DEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+..++.+.++|.+
T Consensus       168 DEPTsgLD~~sr~~LlelL~e  188 (549)
T PRK13545        168 DEALSVGDQTFTKKCLDKMNE  188 (549)
T ss_pred             ECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999865

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.95  E-value=2.2e-28  Score=233.10  Aligned_cols=166  Identities=16%  Similarity=0.100  Sum_probs=126.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      .++++++|+++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|++..+.  ....+. 
T Consensus       320 ~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~--~~~i~~-  389 (552)
T TIGR03719       320 DKVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGE--TVKLAY-  389 (552)
T ss_pred             CeEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECC--ceEEEE-
Confidence            35799999999998643    7799999999999999999999999999999999997   9999943232  123454 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +.++...++ ..+++.++........+...  .......+++.+++.   .+..+..||+||+||+++|++++.+|++||
T Consensus       390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll  466 (552)
T TIGR03719       390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL  466 (552)
T ss_pred             EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence            555532111 23566665544221112111  122345678888874   356788999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.+++.+.++|.+
T Consensus       467 LDEPt~~LD~~~~~~l~~~l~~  488 (552)
T TIGR03719       467 LDEPTNDLDVETLRALEEALLE  488 (552)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.95  E-value=2.9e-28  Score=232.45  Aligned_cols=165  Identities=16%  Similarity=0.114  Sum_probs=126.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++||++.|++..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|++..+.  ....|. +
T Consensus       323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~--~~~i~~-v  392 (556)
T PRK11819        323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGE--TVKLAY-V  392 (556)
T ss_pred             eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECC--ceEEEE-E
Confidence            4799999999998743    7799999999999999999999999999999999997   9999943232  123454 5


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      .++...+ ...+++.++........+..  ........+++.+++.   .+..+..||+||+||+++|++++.+|++||+
T Consensus       393 ~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL  469 (556)
T PRK11819        393 DQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLL  469 (556)
T ss_pred             eCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            5543111 22356666554432111211  1122345678888874   3667889999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHHh
Q 025256          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 DEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.+++.+.++|.+
T Consensus       470 DEPt~~LD~~~~~~l~~~l~~  490 (556)
T PRK11819        470 DEPTNDLDVETLRALEEALLE  490 (556)
T ss_pred             cCCCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999875

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.95  E-value=1.2e-28  Score=231.81  Aligned_cols=172  Identities=16%  Similarity=0.018  Sum_probs=121.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~-----  147 (255)
                      .++++++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|++.   | ++|+ .+++...     
T Consensus       258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~  330 (490)
T PRK10938        258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET  330 (490)
T ss_pred             CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence            45899999999998643    6799999999999999999999999999999999873   4 5898 4555321     


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCC---CCcHHHHHHHHHhhcCCC---CCCCCCCCccccch
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP  216 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~---~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qr  216 (255)
                          +...+. +.++.........+..+........ .+...   ......+.++++.+++..   +.++..||+||+||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  409 (490)
T PRK10938        331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL  409 (490)
T ss_pred             HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence                112333 3433211111001221111110000 01111   111234677888888763   55677999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++++.+|++||+||||++||+.+++++.++|.+.
T Consensus       410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l  447 (490)
T PRK10938        410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL  447 (490)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.95  E-value=5e-28  Score=230.61  Aligned_cols=165  Identities=16%  Similarity=0.057  Sum_probs=123.0

Q ss_pred             ceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        76 ~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .+++++||++.|+ +..    +++++||+|++|++++|+||||||||||+++|+|++.   |++|++ +++   ....|.
T Consensus         3 ~~i~~~nls~~~~~~~~----il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~   72 (552)
T TIGR03719         3 YIYTMNRVSKVVPPKKE----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGY   72 (552)
T ss_pred             EEEEEeeEEEecCCCCe----eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence            3799999999997 432    6799999999999999999999999999999999997   999994 443   123444


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHh--------------cCCCCCC----------------------cHHHHHHHHHh
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKN  197 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~  197 (255)
                       +.++... + ..+++.++..+....              .+.....                      ....+.++++.
T Consensus        73 -v~Q~~~~-~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (552)
T TIGR03719        73 -LPQEPQL-D-PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA  149 (552)
T ss_pred             -EeccCCC-C-CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence             5555432 1 235666665542110              0111000                      01223455666


Q ss_pred             hcCC-CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       198 l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++. .+..+..||+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence            6663 3566789999999999999999999999999999999999999999998865

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.95  E-value=5.6e-28  Score=202.65  Aligned_cols=171  Identities=15%  Similarity=0.090  Sum_probs=123.8

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .+++|+++||+..|+++.    +|+++|++|++||-.+|+|||||||||||++++|...   |.+|. .+.|...     
T Consensus        28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence            457899999999999965    7799999999999999999999999999999999995   88777 2222110     


Q ss_pred             ----CCCeeEEEe--cCCCCCcCccCCcccChHH-HHHhcCCCC-CC---cHHHHHHHHHhhcCC--CCCCCCCCCcccc
Q 025256          148 ----PPDVATVLP--MDGFHLYLSQLDAMEDPKE-AHARRGAPW-TF---NPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ----~~~~g~~i~--~d~~~~~~~~l~~~e~~~~-~~~~~g~~~-~~---~~~~~~~~l~~l~l~--~~~~~~~lS~G~~  214 (255)
                          +...|. ++  +...  +..+.++.+-... ...-.|+.+ ..   +......+++.+++.  .+.+...||-||+
T Consensus       101 ~~elrk~IG~-vS~~L~~~--~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~  177 (257)
T COG1119         101 IFELRKRIGL-VSSELHER--FRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQ  177 (257)
T ss_pred             hHHHHHHhCc-cCHHHHhh--cccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHH
Confidence                122232 11  0111  0111112211100 111234333 22   344557788888776  5677889999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+||||+.+|++||||||+.|||...++.+.+.|.+.
T Consensus       178 rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~  217 (257)
T COG1119         178 RRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL  217 (257)
T ss_pred             HHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998764

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.95  E-value=1.7e-28  Score=231.26  Aligned_cols=172  Identities=13%  Similarity=0.103  Sum_probs=124.6

Q ss_pred             ceEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCcc-ccCCCCCC----
Q 025256           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVKP----  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~-~~~~~~~~----  148 (255)
                      ++++++|+++.|+.. ...  +++++||+|++|++++|+||||||||||+|+|+|+++   | ++|+ .+++....    
T Consensus       256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~  330 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP  330 (500)
T ss_pred             ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence            479999999999421 112  6799999999999999999999999999999999995   6 7999 45553211    


Q ss_pred             -----CCeeEEEecCCC--CCcCccCCcccChHHHHH-hc-C---CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256          149 -----PDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       149 -----~~~g~~i~~d~~--~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (255)
                           ...|. +.++..  .+. ..+++.++...... .. .   .........+.++++.+++.   .+.++..||+||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  408 (500)
T TIGR02633       331 AQAIRAGIAM-VPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN  408 (500)
T ss_pred             HHHHhCCCEE-cCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence                 12344 444421  111 22455554433211 11 1   11111223467888888884   356778999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|++||+||||++||+.+++.+.+++.+.
T Consensus       409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  449 (500)
T TIGR02633       409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL  449 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988753

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.95  E-value=3.3e-28  Score=253.96  Aligned_cols=171  Identities=15%  Similarity=0.178  Sum_probs=136.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      .+.|+++||+|.|++..+  .+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus       926 ~~~L~I~nLsK~y~~~~k--~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGR--PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred             CceEEEEeEEEEecCCCc--eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence            357999999999963111  27799999999999999999999999999999999998   99999 4665322      


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       +...|. +.++...  ...+++.++..+.....+.........+.++++.+++.  .+.++..||||||||+++|+|++
T Consensus      1001 ~r~~IG~-~pQ~~~L--~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1001 VRQSLGM-CPQHNIL--FHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             HhhcEEE-EecCCcC--CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             123454 5555432  23478888887765555554333344567888888886  45678899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+..++.++++|.+
T Consensus      1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257      1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999976

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.95  E-value=6.7e-28  Score=233.08  Aligned_cols=166  Identities=14%  Similarity=0.041  Sum_probs=120.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      |++|+++||++.|++..    +|+++||+|++|+++||+||||||||||||+|+|++.   |++|++ ++++.   ..+.
T Consensus         1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~   70 (635)
T PRK11147          1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR   70 (635)
T ss_pred             CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence            45899999999998743    6799999999999999999999999999999999997   899984 44321   1121


Q ss_pred             EEecCCCCCcCccCCcccCh------------------------------HHHHH---hcC-CCCCCcHHHHHHHHHhhc
Q 025256          154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHA---RRG-APWTFNPLLLLNCLKNLR  199 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~------------------------------~~~~~---~~g-~~~~~~~~~~~~~l~~l~  199 (255)
                       +.+....  ....++.+..                              .....   .+. .........+.++++.++
T Consensus        71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg  147 (635)
T PRK11147         71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG  147 (635)
T ss_pred             -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence             2221100  0000111100                              00000   000 000112345677888888


Q ss_pred             CCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       200 l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+..+..|||||+|||++|++|+.+|++|||||||++||+.+++.+.++|..
T Consensus       148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence            876778889999999999999999999999999999999999999999998864

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.95  E-value=3.5e-28  Score=193.14  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=95.8

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++             |. +.+
T Consensus         1 l~~~~l~~~~~~~~----~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~-------------G~-i~~   59 (144)
T cd03221           1 IELENLSKTYGGKL----LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDE-------------GI-VTW   59 (144)
T ss_pred             CEEEEEEEEECCce----EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCc-------------eE-EEE
Confidence            46789999997643    6799999999999999999999999999999999994   444             44 444


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCC
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~  236 (255)
                      ++..                 ..++ ++                        ||+||+||+++|++++.+|+++|+|||+
T Consensus        60 ~~~~-----------------~i~~~~~------------------------lS~G~~~rv~laral~~~p~illlDEP~   98 (144)
T cd03221          60 GSTV-----------------KIGYFEQ------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT   98 (144)
T ss_pred             CCeE-----------------EEEEEcc------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            4420                 1111 11                        9999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..+..+.+++.+
T Consensus        99 ~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          99 NHLDLESIEALEEALKE  115 (144)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999999865

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.95  E-value=4.9e-28  Score=233.85  Aligned_cols=163  Identities=17%  Similarity=0.106  Sum_probs=123.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC--------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------K  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~--------~  147 (255)
                      -++++||++.|+....  .+|+|+||+|++||.+||+|+||||||||+|+|.|++.   |+.|+ .+||..        .
T Consensus       471 ~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         471 EIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             eEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence            5899999999987532  36799999999999999999999999999999999998   99999 466632        1


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHH---------HhhcCCCCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL---------KNLRNQGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l---------~~l~l~~~~~----~~~lS~G~~  214 (255)
                      +...|. +.+|++....   +..||...     +.|. .+.+.+.+.+         .++-++.+..    ...||||||
T Consensus       546 R~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~~p~-~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr  615 (709)
T COG2274         546 RRQVGY-VLQDPFLFSG---SIRENIAL-----GNPE-ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR  615 (709)
T ss_pred             HhheeE-EcccchhhcC---cHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence            445565 7787765442   44443322     2232 2233333333         3333333333    347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||+++.+|+|||+||||++||+.+.+.+.+.+.+.
T Consensus       616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~  655 (709)
T COG2274         616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI  655 (709)
T ss_pred             HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988764

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.1e-28  Score=194.37  Aligned_cols=168  Identities=17%  Similarity=0.151  Sum_probs=131.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA---  152 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g---  152 (255)
                      +++++|++...+...    .+.+++|++.+||++-|.||||||||||||+|+|+++   |++|++ +.+........   
T Consensus         2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            467888988887744    6699999999999999999999999999999999998   999994 44322111110   


Q ss_pred             EEEecCCCC-CcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcE
Q 025256          153 TVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       153 ~~i~~d~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      ..+.+-|.. --...+++.||..+.....+.   .+...+.+.++.+++.  .+.+...||-||++||++||..+..+++
T Consensus        75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL  151 (209)
T COG4133          75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL  151 (209)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence            101111111 113458899999998776654   3345677888999987  4666779999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+|||+++||......+-.++.+.
T Consensus       152 WiLDEP~taLDk~g~a~l~~l~~~H  176 (209)
T COG4133         152 WILDEPFTALDKEGVALLTALMAAH  176 (209)
T ss_pred             eeecCcccccCHHHHHHHHHHHHHH
Confidence            9999999999999999998888654

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.95  E-value=6.9e-28  Score=206.37  Aligned_cols=163  Identities=16%  Similarity=0.151  Sum_probs=112.7

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++.. ...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 l~i~~l~~~~~~~~-~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (238)
T cd03249           1 IEFKNVSFRYPSRP-DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR   76 (238)
T ss_pred             CeEEEEEEecCCCC-CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence            46889999997521 1126799999999999999999999999999999999997   99999 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHH---------HHHHhh--cCC--CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l--~l~--~~~~~~~lS~G~~q  215 (255)
                      ...+. +.++... +.  .++.++...     +... .......         +.++.+  ++.  ....+..||+||+|
T Consensus        77 ~~i~~-~~q~~~~-~~--~tv~e~l~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q  146 (238)
T cd03249          77 SQIGL-VSQEPVL-FD--GTIAENIRY-----GKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ  146 (238)
T ss_pred             hhEEE-ECCchhh-hh--hhHHHHhhc-----cCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence            12333 4433221 11  233333221     1111 1111111         122222  111  23456799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  185 (238)
T cd03249         147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA  185 (238)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.95  E-value=3.7e-28  Score=206.00  Aligned_cols=156  Identities=17%  Similarity=0.080  Sum_probs=117.6

Q ss_pred             ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-------CeeEEEecCCCCCcC
Q 025256           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-------DVATVLPMDGFHLYL  164 (255)
Q Consensus        93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~-------~~g~~i~~d~~~~~~  164 (255)
                      .+.++.|+||+|++|+++|++|||||||||++|+|.|++.   |++|. .++|.....       ..+.+  +..+....
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v--~gqk~ql~  110 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLV--MGQKLQLW  110 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHH--hhhhheee
Confidence            3668899999999999999999999999999999999997   88887 344432110       11111  11111112


Q ss_pred             ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~  242 (255)
                      .+++..+.....+..+.++.+.-.+....+.+.+.+.  .+.++..||-|||.|+.+|.+|+++|+||+|||||.+||..
T Consensus       111 Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~  190 (325)
T COG4586         111 WDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN  190 (325)
T ss_pred             eechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence            2344555555555566666544445556666777777  67778899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 025256          243 VWKDVSSMFDE  253 (255)
Q Consensus       243 ~~~~l~~ll~~  253 (255)
                      .+..+++++.+
T Consensus       191 aq~~ir~Flke  201 (325)
T COG4586         191 AQANIREFLKE  201 (325)
T ss_pred             HHHHHHHHHHH
Confidence            99999999876

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.95  E-value=3.6e-28  Score=223.78  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=133.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~----  149 (255)
                      +++++++|++|+|++.+    ||++|||++++||+++|+|.||||||||+|+|+|.++   |++|+ .++|+....    
T Consensus         6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~   78 (500)
T COG1129           6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR   78 (500)
T ss_pred             cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence            46899999999999876    9999999999999999999999999999999999998   99999 577754321    


Q ss_pred             ---CeeE-EEecCCCCCcCccCCcccChHHHHHh---cCC-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          150 ---DVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR---RGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       150 ---~~g~-~i~~d~~~~~~~~l~~~e~~~~~~~~---~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                         ..|. +|+|+-...  +++++.+|+...+..   +++ .+.........+++.+++.  .+..+..||.||+|.|+|
T Consensus        79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI  156 (500)
T COG1129          79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI  156 (500)
T ss_pred             HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence               1232 245544333  347887776543322   222 2222334557788877764  566777999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+|+..++++|||||||+.|+....+.+.+++.+
T Consensus       157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~  190 (500)
T COG1129         157 ARALSFDARVLILDEPTAALTVKETERLFDLIRR  190 (500)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988865

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=8.9e-28  Score=232.10  Aligned_cols=163  Identities=16%  Similarity=0.058  Sum_probs=119.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i  155 (255)
                      ||+++||++.|++..    +|+++||+|++|+++||+||||||||||||+|+|++.   |++|++ +++..   ..+. +
T Consensus         1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~   69 (638)
T PRK10636          1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V   69 (638)
T ss_pred             CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence            488999999998754    6799999999999999999999999999999999987   999984 44421   1232 3


Q ss_pred             ecCCCCCcCccCCcccChH-----------------------HHH---HhcC-CCCCCcHHHHHHHHHhhcCC---CCCC
Q 025256          156 PMDGFHLYLSQLDAMEDPK-----------------------EAH---ARRG-APWTFNPLLLLNCLKNLRNQ---GSVY  205 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~-----------------------~~~---~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~  205 (255)
                      .++.....   .+..+...                       ...   .... .........+..+++.+++.   .+.+
T Consensus        70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~  146 (638)
T PRK10636         70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP  146 (638)
T ss_pred             ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence            33221110   11111000                       000   0000 00111224567788888885   3567


Q ss_pred             CCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +..|||||+||+++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence            889999999999999999999999999999999999999999998864

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.4e-28  Score=226.81  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=125.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      -.|+++||++.|+... .+.+|+|+||+|++||++||+||||+||||++++|..++.   |++|+ .+||...       
T Consensus       464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~  539 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY  539 (716)
T ss_pred             ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence            3699999999998863 4557899999999999999999999999999999999998   99999 4776432       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHH---------HHHHhhcCCCCCC----CCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQGSVY----APSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~l~~~~~----~~~lS~G~  213 (255)
                       +...|. |.++.....   -++.||+.+     |.+ ....+.+.         +.+.++-.+.+..    ..+|||||
T Consensus       540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ  609 (716)
T KOG0058|consen  540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ  609 (716)
T ss_pred             HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence             233454 666654333   355565543     333 33333333         2333333443333    33899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++|||||+.+|.||||||.|++||.++...+.+.++.
T Consensus       610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~  649 (716)
T KOG0058|consen  610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR  649 (716)
T ss_pred             HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999988875

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.95  E-value=7.1e-28  Score=205.98  Aligned_cols=160  Identities=14%  Similarity=0.147  Sum_probs=112.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++|+++.|++. ..  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253           1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence            4688999999631 12  6799999999999999999999999999999999997   99998 4555321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH---------HHHhhcCC----CCCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~l~----~~~~~~~lS~G~~q  215 (255)
                      ...+. +..+... +.  .++.++..+.     ... ........         .++.+..+    ....+..||+||+|
T Consensus        75 ~~i~~-~~q~~~~-~~--~tv~~nl~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~  144 (236)
T cd03253          75 RAIGV-VPQDTVL-FN--DTIGYNIRYG-----RPD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ  144 (236)
T ss_pred             hhEEE-ECCCChh-hc--chHHHHHhhc-----CCC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence            12333 4444322 21  2443333221     111 11111222         22222111    23346689999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++|+.+|+++|+||||++||+..++.+.++|.+
T Consensus       145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~  182 (236)
T cd03253         145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD  182 (236)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.95  E-value=6.4e-28  Score=228.82  Aligned_cols=161  Identities=14%  Similarity=0.156  Sum_probs=123.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      .|+++||++.|++.. .  +|+|+||++++|+.++|+||||||||||+++|+|++.   |++|+ .+++....       
T Consensus       334 ~I~~~~vsf~Y~~~~-~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGSP-P--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCCC-c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            589999999997532 2  6799999999999999999999999999999999998   99999 46663221       


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~q  215 (255)
                      ...+. ++++.+...   -+..+|+.+     +. .+.+.+.+.++++..++.         .+..    ...|||||||
T Consensus       408 ~~i~~-V~Q~~~lF~---~TI~eNI~~-----g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ  477 (529)
T TIGR02868       408 RRISV-FAQDAHLFD---TTVRDNLRL-----GR-PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ  477 (529)
T ss_pred             hheEE-EccCccccc---ccHHHHHhc-----cC-CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence            23444 777776543   255554432     21 223455566666655442         2322    3469999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988865

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=6.2e-28  Score=233.17  Aligned_cols=162  Identities=17%  Similarity=0.161  Sum_probs=122.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++|+++||++.|++..    +|+++||+|.+|+++||+||||||||||+|+|+|+++   |++|++ ++..   ...|.
T Consensus       310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy  379 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGY  379 (638)
T ss_pred             CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEE
Confidence            35799999999998744    6799999999999999999999999999999999997   999984 4321   13343


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                       +.++....    ++........  ............+.++++.+++.   .+.++..|||||+||+++|++++.+|++|
T Consensus       380 -~~Q~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL  452 (638)
T PRK10636        380 -FAQHQLEF----LRADESPLQH--LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL  452 (638)
T ss_pred             -ecCcchhh----CCccchHHHH--HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             44432110    1111111111  11111122344567888888884   35678899999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.+++.+.++|.+
T Consensus       453 lLDEPt~~LD~~~~~~l~~~L~~  475 (638)
T PRK10636        453 LLDEPTNHLDLDMRQALTEALID  475 (638)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999865

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.4e-27  Score=190.70  Aligned_cols=171  Identities=15%  Similarity=0.159  Sum_probs=129.5

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC---CCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD---SQV----  146 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~---~~~----  146 (255)
                      .|++++.+++|.|+...    ..++|||++.+||++||+|.|||||||||++|++.+.   |+.|++ +.   ++.    
T Consensus         4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence            36899999999999865    6799999999999999999999999999999999997   999982 22   111    


Q ss_pred             ----------CCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcCCC---CCCCCCCCcc
Q 025256          147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG---SVYAPSFDHG  212 (255)
Q Consensus       147 ----------~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G  212 (255)
                                .+.+.|. +.++..+-.+-..++-.|+-+.....|.. .........++++.+.+..   +-.+..||||
T Consensus        77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG  155 (258)
T COG4107          77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG  155 (258)
T ss_pred             hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence                      1345666 55554432222233344444433333321 1112345678899988874   3456799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+.|||.|+..|+++++||||.|||...+..+.+++.-
T Consensus       156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrg  196 (258)
T COG4107         156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=6.1e-28  Score=202.48  Aligned_cols=151  Identities=15%  Similarity=0.152  Sum_probs=125.2

Q ss_pred             ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEecC-CCCCcCccCCcc
Q 025256           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMD-GFHLYLSQLDAM  170 (255)
Q Consensus        93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~~d-~~~~~~~~l~~~  170 (255)
                      .+.+|+||||++++||.+||+|+||||||||+|+|+|.++   |++|+ .+.++....     +.+. |+   .++++..
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~Gf---~pelTGr  107 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAGF---DPELTGR  107 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccCC---CcccchH
Confidence            4668999999999999999999999999999999999998   99998 455544211     1111 22   2337999


Q ss_pred             cChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~  248 (255)
                      +|+.......|+......+...++.+.-.++  .+.++..||.||+-|++++.+...+|+|||+||..+..|+..+++..
T Consensus       108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~  187 (249)
T COG1134         108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL  187 (249)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence            9999988888886666667777888766665  57778899999999999999999999999999999999999998888


Q ss_pred             HHHHhh
Q 025256          249 SMFDEK  254 (255)
Q Consensus       249 ~ll~~~  254 (255)
                      +.+++.
T Consensus       188 ~rl~e~  193 (249)
T COG1134         188 ERLNEL  193 (249)
T ss_pred             HHHHHH
Confidence            887764

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=212.98  Aligned_cols=172  Identities=14%  Similarity=0.118  Sum_probs=124.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCcc-ccCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~--~p~~G~-~~~~~~~-----  147 (255)
                      .+|+++|+++.|.+...  .+|+++||+|++|+++||+||||||||||+++|+|+....  -|++|+ .++|...     
T Consensus        79 ~~i~~~nls~~y~~~~~--~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTK--HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             ceEEEEeeEEEecCCCc--eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            47999999999964211  2679999999999999999999999999999999998410  146898 4565432     


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC-CcHHHHHHHHHhhcCC------CCCCCCCCCccccc
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (255)
                           +...+. ++++.... .  .++.+|+.+.....+.... .....+..+++.+.+.      ...+...||+||+|
T Consensus       157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq  232 (329)
T PRK14257        157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ  232 (329)
T ss_pred             chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence                 122333 55554432 1  4666666543222222111 1112245666666652      34567799999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|||++.+|+|||+||||++||+...+.+.++|.+
T Consensus       233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~  270 (329)
T PRK14257        233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE  270 (329)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998865

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.95  E-value=1.2e-27  Score=231.25  Aligned_cols=166  Identities=16%  Similarity=0.153  Sum_probs=125.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      -.+|+++||++.|++..    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|++..+.  ....|. 
T Consensus       317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~i~y-  386 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGT--KLEVAY-  386 (635)
T ss_pred             CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECC--CcEEEE-
Confidence            35799999999998743    6799999999999999999999999999999999997   9999943232  123444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +.++...+ ...+++.++......  ..........+.++++.+++.   .+.++..|||||+||+++|++++.+|++||
T Consensus       387 ~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl  463 (635)
T PRK11147        387 FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI  463 (635)
T ss_pred             EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            44432111 223466555433211  111011133466778887774   356778999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||++||+.+++.+.+++.+
T Consensus       464 LDEPt~~LD~~~~~~l~~~l~~  485 (635)
T PRK11147        464 LDEPTNDLDVETLELLEELLDS  485 (635)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998865

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=6.2e-28  Score=191.97  Aligned_cols=172  Identities=18%  Similarity=0.171  Sum_probs=131.4

Q ss_pred             eEEEccceeeccccc---cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc---cCCCCC---
Q 025256           77 VVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS---FDSQVK---  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~---~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~---~~~~~~---  147 (255)
                      .+.++|++|+|--..   -.+.+++++||+++.||+++|-||||+|||||||+|.+.+.   ||+|++   ..+...   
T Consensus         4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl~   80 (235)
T COG4778           4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDLV   80 (235)
T ss_pred             eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhhh
Confidence            588999999994221   23567899999999999999999999999999999999998   999983   333211   


Q ss_pred             -----------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccc
Q 025256          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (255)
Q Consensus       148 -----------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~  213 (255)
                                 +.+.|+ +++.=..+++  ....+-........|++.+........++.++.+..   ...+..||||+
T Consensus        81 ~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGE  157 (235)
T COG4778          81 TAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGE  157 (235)
T ss_pred             ccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCch
Confidence                       123343 3332222222  333343344444567766556667788888888874   45667999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|||.|||.++.+-+||+|||||+.||..++.-+.++|.++
T Consensus       158 qQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         158 QQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             heehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999874

>PRK13409 putative ATPase RIL; Provisional

Probab=99.95  E-value=1.9e-27  Score=227.49  Aligned_cols=158  Identities=13%  Similarity=0.098  Sum_probs=123.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++++++|+++.|++.     .|+++||++++||+++|+||||||||||+|+|+|+++   |++|++ ++     ...+.
T Consensus       338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y  404 (590)
T PRK13409        338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY  404 (590)
T ss_pred             ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence            3579999999999752     3699999999999999999999999999999999997   999984 33     12333


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                       +.++...  ...+++.++........  .   ......++++.+++.  .+.++..|||||+|||++|++|+.+|++||
T Consensus       405 -~~Q~~~~--~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL  476 (590)
T PRK13409        405 -KPQYIKP--DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL  476 (590)
T ss_pred             -ecccccC--CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence             4444221  22356666554321111  1   123456788888875  467788999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.++.++.++|.+
T Consensus       477 LDEPt~~LD~~~~~~l~~~l~~  498 (590)
T PRK13409        477 LDEPSAHLDVEQRLAVAKAIRR  498 (590)
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.95  E-value=3.9e-27  Score=199.24  Aligned_cols=154  Identities=12%  Similarity=0.064  Sum_probs=109.7

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---------
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------  148 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---------  148 (255)
                      .+.++.+.|++..   .+++++||++++|++++|+||||||||||+++|+|++.   |++|+ .+++....         
T Consensus         2 ~~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSGL---ATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCCC---cceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            4678999997531   26799999999999999999999999999999999997   99999 45553210         


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCcc
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG  212 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G  212 (255)
                         ...+. +.++... +.  .++.++....       ..........+++.+++.             ...++..||+|
T Consensus        76 ~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G  144 (218)
T cd03290          76 RNRYSVAY-AAQKPWL-LN--ATVEENITFG-------SPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG  144 (218)
T ss_pred             hhcceEEE-EcCCCcc-cc--ccHHHHHhhc-------CcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence               11222 4444322 21  3444433221       111222233444444321             12456799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      |+||+++|++++.+|+++|+||||++||+..++++.+
T Consensus       145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence            9999999999999999999999999999999998887

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.95  E-value=1e-27  Score=206.76  Aligned_cols=160  Identities=18%  Similarity=0.149  Sum_probs=116.0

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------C
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P  149 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------~  149 (255)
                      +++||++.    .    +|+++||++++|++++|+||||||||||+++|+|++    |.+|+ .+++....        .
T Consensus         2 ~~~~l~~~----~----~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS----T----RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh----c----eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence            46777774    1    679999999999999999999999999999999998    56898 46653221        1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhcc--
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL--  225 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~--  225 (255)
                      ..+. ++++.....  .+++.++..+.. ..+.........+.++++.+++..  +..+..||+||+||+++|++++.  
T Consensus        70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~  145 (248)
T PRK03695         70 HRAY-LSQQQTPPF--AMPVFQYLTLHQ-PDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW  145 (248)
T ss_pred             heEE-ecccCccCC--CccHHHHHHhcC-ccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence            2333 444432221  245555443321 111111112345677888888753  56778999999999999999997  


Q ss_pred             -----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 -----~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                           +|++||+||||++||+..++.+.+++.+.
T Consensus       146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~  179 (248)
T PRK03695        146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL  179 (248)
T ss_pred             cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                 67999999999999999999999998753

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=1.9e-27  Score=215.74  Aligned_cols=169  Identities=15%  Similarity=0.122  Sum_probs=132.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      ++.+++++++|.|++..    |+++|||+|++||+++|+|.||||||||+++|.|+++   |++|+ .++|+...     
T Consensus         2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            46799999999999766    9999999999999999999999999999999999998   99999 57775432     


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhc-C--CCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g--~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                          ...|. +++.-..++  .+|+.||+....... +  +........+.++.+.+++.  .+.++..||-|++|||.|
T Consensus        75 dA~~~GIGM-VhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI  151 (501)
T COG3845          75 DAIRLGIGM-VHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI  151 (501)
T ss_pred             HHHHcCCcE-Eeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence                22444 554433322  378888775543221 1  01112334556777777765  567788999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .++|..++++|||||||+-|-|...+++++++..
T Consensus       152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~  185 (501)
T COG3845         152 LKALYRGARLLILDEPTAVLTPQEADELFEILRR  185 (501)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888764

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.94  E-value=5e-27  Score=203.53  Aligned_cols=164  Identities=13%  Similarity=0.062  Sum_probs=114.8

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .+..++++|+++.|+...  ..+++++||++++|++++|+|+||||||||+++|+|++.   |++|+ .+++...     
T Consensus        16 ~~~~i~~~~l~~~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   90 (257)
T cd03288          16 LGGEIKIHDLCVRYENNL--KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL   90 (257)
T ss_pred             CCceEEEEEEEEEeCCCC--CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence            456799999999997521  126799999999999999999999999999999999997   99999 4555321     


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---------HHhh--cCC--CCCCCCCCCc
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--RNQ--GSVYAPSFDH  211 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~lS~  211 (255)
                         ....+. +.++.. ++.  .++.++.       ..............         ++.+  ++.  .......||+
T Consensus        91 ~~~~~~i~~-v~q~~~-l~~--~tv~~nl-------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~  159 (257)
T cd03288          91 HTLRSRLSI-ILQDPI-LFS--GSIRFNL-------DPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV  159 (257)
T ss_pred             HHHhhhEEE-ECCCCc-ccc--cHHHHhc-------CcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence               112333 444432 111  1222221       11111111122222         2222  111  1234568999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998875

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.94  E-value=4.7e-27  Score=205.40  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=117.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------C
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++||++.|.+....  +|+++||+|++|++++|+||||||||||+++|+|++    +++|+ .+++...        +
T Consensus         3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence            7899999999532112  679999999999999999999999999999999999    67898 4665321        1


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCC-----------CCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~-----------~~lS~G~~q  215 (255)
                      ...+. ++++... +.  .++.++...    ++   ....+.+.+.++.+++..  +..+           ..||+||+|
T Consensus        77 ~~i~~-v~q~~~l-f~--~tv~~nl~~----~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q  145 (275)
T cd03289          77 KAFGV-IPQKVFI-FS--GTFRKNLDP----YG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ  145 (275)
T ss_pred             hhEEE-ECCCccc-ch--hhHHHHhhh----cc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence            12333 5554432 21  233333321    11   123445666777776642  1222           249999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++||+++.+|+|||+||||++||+..++.+.++|.+.
T Consensus       146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~  184 (275)
T cd03289         146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA  184 (275)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.94  E-value=4.2e-27  Score=227.84  Aligned_cols=173  Identities=16%  Similarity=0.142  Sum_probs=131.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++.|+.......+++++||++++||+++|+||||||||||+++|+|++.   |++|+ .+++....      
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            479999999999642111226799999999999999999999999999999999998   99999 56664321      


Q ss_pred             ------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhh
Q 025256          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a  220 (255)
                            ...+. ++++...+  .++++.++..+.....+...........++++.+++..  +..+..||+||+||+++|
T Consensus        80 ~~~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535         80 LAQLRREHFGF-IFQRYHLL--SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HHHHHhccEEE-EeCCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence                  12343 55554322  22466666654333333332223345677888887763  556779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++++.+|+++|+|||+.+||+.+++.+.+++.+.
T Consensus       157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l  190 (648)
T PRK10535        157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQL  190 (648)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.94  E-value=3.3e-27  Score=226.31  Aligned_cols=163  Identities=14%  Similarity=0.113  Sum_probs=123.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++..+.  +|+|+||+|++|+.++|+|+||||||||+++|+|++.   |++|+ .++|...        
T Consensus       341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            58999999999753222  6799999999999999999999999999999999998   99999 5666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~  214 (255)
                      +...+ +++++.+...   -+..+|+.     .+.++..+.+.+.++++..++         +.+..    ...|||||+
T Consensus       416 ~~~i~-~v~Q~~~lf~---~Ti~~Ni~-----~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr  486 (582)
T PRK11176        416 RNQVA-LVSQNVHLFN---DTIANNIA-----YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR  486 (582)
T ss_pred             Hhhce-EEccCceeec---chHHHHHh-----cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence            12234 3777765433   24444332     222333455666666665443         22222    246999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus       487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.94  E-value=2.5e-27  Score=222.92  Aligned_cols=167  Identities=13%  Similarity=0.137  Sum_probs=119.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++|+++.|.  .    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus       249 ~~i~~~~l~~~~~--~----~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~  319 (491)
T PRK10982        249 VILEVRNLTSLRQ--P----SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE  319 (491)
T ss_pred             cEEEEeCcccccC--c----ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence            4799999999852  2    6799999999999999999999999999999999997   99999 45553221      


Q ss_pred             ---CCeeEEEecCCC--CCcCccCCcccC-----hHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcccc
Q 025256          149 ---PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (255)
Q Consensus       149 ---~~~g~~i~~d~~--~~~~~~l~~~e~-----~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~  214 (255)
                         ...+. +.++..  .++ ..++..++     ........+. ..........++++.+++.   .+.++..|||||+
T Consensus       320 ~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  397 (491)
T PRK10982        320 AINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ  397 (491)
T ss_pred             HHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence               11232 333311  011 11232221     1110001121 1111123456778887774   3667889999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|+|||+||||++||+.+++++.+++.+
T Consensus       398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~  436 (491)
T PRK10982        398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE  436 (491)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999865

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.94  E-value=4.3e-27  Score=229.49  Aligned_cols=161  Identities=16%  Similarity=0.149  Sum_probs=123.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||+++|++..+.  +|+|+||+|++|+.++|+|+||||||||+|+|+|++.   |++|+ .++|...        
T Consensus       451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            58999999999643222  6799999999999999999999999999999999998   99999 4676322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..     +.+  .+.+.+.++++..++.         .+.    ....||||||
T Consensus       526 r~~i~~-v~Q~~~lf~---gTI~eNi~~-----~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr  594 (686)
T TIGR03797       526 RRQLGV-VLQNGRLMS---GSIFENIAG-----GAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR  594 (686)
T ss_pred             HhccEE-EccCCccCc---ccHHHHHhc-----CCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            234454 777776433   244444432     212  4455566666655443         222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+++.+.+..
T Consensus       595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=3.1e-27  Score=194.04  Aligned_cols=167  Identities=14%  Similarity=0.167  Sum_probs=115.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CC---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP---  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~---  149 (255)
                      ||+++|++++..++.    ++++++|++.+||+++|+||||||||||||.|+|.+.   |++|+ .+++...   ++   
T Consensus         1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l   73 (259)
T COG4559           1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL   73 (259)
T ss_pred             CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence            588999999998855    6799999999999999999999999999999999997   88888 3444221   00   


Q ss_pred             --CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC--CcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 --~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                        ..+. +.++...-+.  +++.|-....+.-.+...+  .+......++....+.  .......|||||+|||.+||+|
T Consensus        74 A~~raV-lpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL  150 (259)
T COG4559          74 ARHRAV-LPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL  150 (259)
T ss_pred             HHHhhh-cccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence              1122 3333221111  2333322222111111111  2222245566655543  4566789999999999999998


Q ss_pred             cc------CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~------~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.      .+++|+|||||+.||...+..++.+..+
T Consensus       151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~  186 (259)
T COG4559         151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ  186 (259)
T ss_pred             HHccCCCCCCceEEecCCccccchHHHHHHHHHHHH
Confidence            54      2348899999999999999998887764

>PLN03211 ABC transporter G-25; Provisional

Probab=99.94  E-value=3e-27  Score=228.66  Aligned_cols=164  Identities=14%  Similarity=0.112  Sum_probs=125.8

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccc-ccCCCCC----CCCe
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV  151 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--~G~-~~~~~~~----~~~~  151 (255)
                      .++|+++.|+++.    +|+|+|+++++||++||+||||||||||+++|+|+++   |+  +|+ .++|...    ....
T Consensus        70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence            3567899998744    7799999999999999999999999999999999986   64  898 4666422    1234


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC----cHHHHHHHHHhhcCCC-------CCCCCCCCccccchhhhh
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~----~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~~a  220 (255)
                      +. +.++.....  .+++.|+..+.... ..+...    ....+.++++.+++..       +.....||||||||+++|
T Consensus       143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia  218 (659)
T PLN03211        143 GF-VTQDDILYP--HLTVRETLVFCSLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA  218 (659)
T ss_pred             EE-ECcccccCC--cCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence            44 666654332  36888877664322 222211    2234577888888753       234668999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|+++|+||||++||...+.++.+++.+
T Consensus       219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~  251 (659)
T PLN03211        219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGS  251 (659)
T ss_pred             HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.94  E-value=4.3e-27  Score=232.64  Aligned_cols=165  Identities=17%  Similarity=0.171  Sum_probs=122.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      -.++++||.++|+..+ .+.+|+++||.|++|+.++|+|||||||||++++|.+++.   |++|+ .++|...       
T Consensus       349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~  424 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKW  424 (1228)
T ss_pred             cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHH
Confidence            3599999999999864 4557899999999999999999999999999999999998   99998 4666332       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCC----CCCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~----~~~~~lS~G~  213 (255)
                       +...|. |.+......   .++.||+.+     |-+. ...+...+..+         .+-.+.+    ....+|||||
T Consensus       425 lr~~igl-V~QePvlF~---~tI~eNI~~-----G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ  494 (1228)
T KOG0055|consen  425 LRSQIGL-VSQEPVLFA---TTIRENIRY-----GKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ  494 (1228)
T ss_pred             HHhhcCe-eeechhhhc---ccHHHHHhc-----CCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence             344555 566553222   354444432     3222 22222322222         2222222    2344799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++|||||+.+|+||||||||++||+++.+.+.+.||..
T Consensus       495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~  535 (1228)
T KOG0055|consen  495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA  535 (1228)
T ss_pred             HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999863

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.94  E-value=3.3e-27  Score=222.63  Aligned_cols=165  Identities=12%  Similarity=0.100  Sum_probs=122.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++     .    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus       256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~  323 (501)
T PRK10762        256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD  323 (501)
T ss_pred             cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence            4799999984     1    5799999999999999999999999999999999997   99999 46553211      


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHH-hc----C-CCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (255)
                         ...+. ++++.. ......+++.++..+... ..    + .........+.++++.+++.   .+.++..|||||+|
T Consensus       324 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq  402 (501)
T PRK10762        324 GLANGIVY-ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ  402 (501)
T ss_pred             HHHCCCEE-ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence               12444 555531 011122456555543211 01    1 11111123467888888883   46677899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  440 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ  440 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=3e-27  Score=193.74  Aligned_cols=113  Identities=16%  Similarity=0.180  Sum_probs=91.4

Q ss_pred             ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCC
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~  160 (255)
                      .||+|.|++..    ++++ +|++++|++++|+||||||||||+|+|+|+++   |++|+              |.+++.
T Consensus         4 ~~l~~~~~~~~----~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~   61 (177)
T cd03222           4 PDCVKRYGVFF----LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI   61 (177)
T ss_pred             CCeEEEECCEE----EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence            58899998743    5677 48999999999999999999999999999995   55554              344432


Q ss_pred             CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          161 HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       161 ~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      .+..                 .++...                     ||+||+||+++|++++.+|+++|+||||++||
T Consensus        62 ~i~~-----------------~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD  103 (177)
T cd03222          62 TPVY-----------------KPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLD  103 (177)
T ss_pred             EEEE-----------------EcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence            1100                 011100                     99999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 025256          241 GGVWKDVSSMFDE  253 (255)
Q Consensus       241 ~~~~~~l~~ll~~  253 (255)
                      +..++.+.+++.+
T Consensus       104 ~~~~~~l~~~l~~  116 (177)
T cd03222         104 IEQRLNAARAIRR  116 (177)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998865

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.94  E-value=6.6e-27  Score=201.55  Aligned_cols=144  Identities=15%  Similarity=0.130  Sum_probs=104.1

Q ss_pred             ccccceec-----CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcc
Q 025256           97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAM  170 (255)
Q Consensus        97 l~~vsl~i-----~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~  170 (255)
                      +.+++|++     ++|++++|+||||||||||+++|+|+++   |++|++ +++.    ..+. +.++....  ...++.
T Consensus        10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~--~~~tv~   79 (246)
T cd03237          10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKAD--YEGTVR   79 (246)
T ss_pred             cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCC--CCCCHH
Confidence            35555555     5799999999999999999999999997   999984 4442    2233 33332211  124555


Q ss_pred             cChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~  248 (255)
                      ++........+    .......++++.+++.  .+..+..||+||+||+++|++|+.+|+++|+||||++||+..+..+.
T Consensus        80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~  155 (246)
T cd03237          80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS  155 (246)
T ss_pred             HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            54432211111    1122345677777775  35677899999999999999999999999999999999999999999


Q ss_pred             HHHHhh
Q 025256          249 SMFDEK  254 (255)
Q Consensus       249 ~ll~~~  254 (255)
                      ++|.+.
T Consensus       156 ~~l~~~  161 (246)
T cd03237         156 KVIRRF  161 (246)
T ss_pred             HHHHHH
Confidence            988763

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.94  E-value=3.6e-27  Score=222.35  Aligned_cols=166  Identities=14%  Similarity=0.130  Sum_probs=120.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      +.+++++++..    .    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++++...      
T Consensus       256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~  324 (501)
T PRK11288        256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD  324 (501)
T ss_pred             cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence            46889999732    2    6799999999999999999999999999999999997   99999 45553211      


Q ss_pred             ---CCeeEEEecCCC-CCcCccCCcccChHHHHHhc----CC--CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccc
Q 025256          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (255)
                         ...+. ++++.. ......+++.++........    ++  ..........++++.+++.   .+.++..|||||+|
T Consensus       325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  403 (501)
T PRK11288        325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ  403 (501)
T ss_pred             HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence               12333 444321 00111245555443211111    10  1111123467888888873   46677899999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+.+++++.++|.+
T Consensus       404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  441 (501)
T PRK11288        404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE  441 (501)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999865

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=3.8e-27  Score=189.64  Aligned_cols=177  Identities=15%  Similarity=0.123  Sum_probs=131.1

Q ss_pred             cceEEEccceeecccc-----ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-
Q 025256           75 IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~-----~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-  147 (255)
                      |++++++|++|.|...     .+.+.+++.|||++++|+.++|+|.||||||||.|+|+|.+.   |++|+ .+++... 
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            6789999999998642     124558899999999999999999999999999999999998   99999 4666422 


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (255)
                            +.....+|++|...-.++.+.+-.-.+...+. -.+..+.....+.+.+..+++.   .+.++..+|-||||||
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV  158 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV  158 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence                  33445567777654333222222111111111 1121222334556677777775   5678889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||||+.+|+|||.||..++||...+-++.+++-+.
T Consensus       159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL  195 (267)
T COG4167         159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLEL  195 (267)
T ss_pred             HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999887653

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.94  E-value=3.4e-27  Score=199.22  Aligned_cols=143  Identities=15%  Similarity=0.155  Sum_probs=104.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc--cCCCCCCCCeeEEEecCCCCCcCccCCcccCh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~--~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~  173 (255)
                      +++|+||+|++|++++|+||||||||||+|+|+|+++   |++|++  +++...  .    +.....  ..+.+++.++.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~--~----~~~~~~--l~~~ltv~enl   70 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL--P----LGANSF--ILPGLTGEENA   70 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee--c----cccccc--cCCcCcHHHHH
Confidence            5799999999999999999999999999999999997   999984  343211  0    111111  12235777777


Q ss_pred             HHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      .......+...   ......+.+.+++.  .+..+..||+||+||+++|++++.+|+++|+|||++++|+..++.+.+++
T Consensus        71 ~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l  147 (213)
T PRK15177         71 RMMASLYGLDG---DEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL  147 (213)
T ss_pred             HHHHHHcCCCH---HHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            66544444321   11112222333333  45677899999999999999999999999999999999999999999876


Q ss_pred             H
Q 025256          252 D  252 (255)
Q Consensus       252 ~  252 (255)
                      .
T Consensus       148 ~  148 (213)
T PRK15177        148 A  148 (213)
T ss_pred             H
Confidence            4

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.94  E-value=1.5e-26  Score=226.56  Aligned_cols=162  Identities=20%  Similarity=0.143  Sum_probs=123.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..+.  +|+|+||+|++|+.++|+||||||||||+|+|+|++.   |++|+ .++|...        
T Consensus       477 ~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       477 YVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             eEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence            58999999999863222  6799999999999999999999999999999999998   99999 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..     +- .+.+.+.+.++++..++.         .+.    ....||||||
T Consensus       552 r~~i~~-v~Q~~~lf~---gTi~eNi~l-----~~-~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr  621 (710)
T TIGR03796       552 ANSVAM-VDQDIFLFE---GTVRDNLTL-----WD-PTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR  621 (710)
T ss_pred             HhheeE-EecCChhhh---ccHHHHhhC-----CC-CCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence            234454 777766433   244444322     11 224455555555554432         222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus       622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PLN03073 ABC transporter F family; Provisional

Probab=99.94  E-value=2.7e-26  Score=223.38  Aligned_cols=162  Identities=15%  Similarity=0.136  Sum_probs=122.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|++.  . .+++++||+|++|++++|+||||||||||||+|+|+++   |++|++ +++   ....|. 
T Consensus       507 ~~L~~~~ls~~y~~~--~-~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy-  576 (718)
T PLN03073        507 PIISFSDASFGYPGG--P-LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV-  576 (718)
T ss_pred             ceEEEEeeEEEeCCC--C-eeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE-
Confidence            579999999999642  1 16799999999999999999999999999999999997   999984 332   123444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +.++...    .++..++....... ..+ ......+.++++.+++.   ...++..|||||+||+++|++++.+|++||
T Consensus       577 v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL  650 (718)
T PLN03073        577 FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL  650 (718)
T ss_pred             Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            4543211    12332322211111 111 12345677889998885   356778999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||++||+.+++.+.+.+..
T Consensus       651 LDEPT~~LD~~s~~~l~~~L~~  672 (718)
T PLN03073        651 LDEPSNHLDLDAVEALIQGLVL  672 (718)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999887754

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=6.9e-27  Score=223.75  Aligned_cols=164  Identities=15%  Similarity=0.154  Sum_probs=124.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..++++||++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|++.   |++|+ .+++...       
T Consensus       337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~  411 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA  411 (574)
T ss_pred             CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            359999999999753222  6799999999999999999999999999999999998   99999 4666321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--------CC----CCCCCCcccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG  214 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--------~~----~~~~lS~G~~  214 (255)
                       +...+. ++++.+...   -+..+|+..     +.+ +.+.+.+.++++..++..        +.    ....|||||+
T Consensus       412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr  481 (574)
T PRK11160        412 LRQAISV-VSQRVHLFS---ATLRDNLLL-----AAP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ  481 (574)
T ss_pred             HHhheeE-Ecccchhhc---ccHHHHhhc-----CCC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence             122344 676665332   244443322     222 245566677777766542        11    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+.
T Consensus       482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~  521 (574)
T PRK11160        482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEH  521 (574)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.94  E-value=1e-26  Score=227.48  Aligned_cols=162  Identities=15%  Similarity=0.084  Sum_probs=121.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++. +.  +|+|+||+|++|+.++|+||||||||||+++|+|++.   |++|+ .++|...        
T Consensus       473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            58999999999742 22  6799999999999999999999999999999999998   99999 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..     +.....+.+.+.++++..++         +.+.    ....||||||
T Consensus       547 r~~i~~-v~Q~~~lf~---gTI~eNi~l-----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr  617 (708)
T TIGR01193       547 RQFINY-LPQEPYIFS---GSILENLLL-----GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK  617 (708)
T ss_pred             HHheEE-EecCceehh---HHHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence            223454 777776433   244444432     21122344455555554433         2222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus       618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~  656 (708)
T TIGR01193       618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN  656 (708)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.94  E-value=1.1e-26  Score=219.51  Aligned_cols=164  Identities=19%  Similarity=0.183  Sum_probs=118.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++|+++     .    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus       267 ~~l~~~~l~~-----~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~  334 (510)
T PRK15439        267 PVLTVEDLTG-----E----GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ  334 (510)
T ss_pred             ceEEEeCCCC-----C----CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4799999983     1    4699999999999999999999999999999999997   99999 45553211      


Q ss_pred             ---CCeeEEEecCCC--CCcCccCCcccChHHHH-HhcCC--CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256          149 ---PDVATVLPMDGF--HLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 ---~~~g~~i~~d~~--~~~~~~l~~~e~~~~~~-~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (255)
                         ...+. ++++..  .++ ..+++.++..... .....  ........+.++++.+++.   .+.++..||+||+||+
T Consensus       335 ~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl  412 (510)
T PRK15439        335 RLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV  412 (510)
T ss_pred             HHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence               12233 443311  111 1234444332110 00111  1111223456788888874   3567789999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~  448 (510)
T PRK15439        413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS  448 (510)
T ss_pred             HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence            999999999999999999999999999999999875

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=2.3e-26  Score=204.12  Aligned_cols=177  Identities=17%  Similarity=0.211  Sum_probs=139.7

Q ss_pred             ccceEEEccceeecccc-------ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCC
Q 025256           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~-------~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~  145 (255)
                      ..+++++++|...|.-.       ...+.+++++||++++|+.+||+|.||||||||-+.|.+++    +..|+ .|+|+
T Consensus       273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~  348 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQ  348 (534)
T ss_pred             CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCc
Confidence            34689999999998532       12366889999999999999999999999999999999999    67799 57774


Q ss_pred             CCC----------CCeeEEEecCCCCCcCccCCcccChHHHHHhcC--CCCCCcHHHHHHHHHhhcCC---CCCCCCCCC
Q 025256          146 VKP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (255)
Q Consensus       146 ~~~----------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS  210 (255)
                      ...          ...-.++++|.|--..+.+++.+-+.+.....+  .........+.+.++.+++.   .+.|+.+||
T Consensus       349 ~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFS  428 (534)
T COG4172         349 DIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFS  428 (534)
T ss_pred             cccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccC
Confidence            321          122345888888666666666555554443333  12233445678888899987   578999999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+||++||||++.+|+++++||||+.||...+.++.+++...
T Consensus       429 GGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L  472 (534)
T COG4172         429 GGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL  472 (534)
T ss_pred             cchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998653

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.94  E-value=1.7e-26  Score=219.13  Aligned_cols=162  Identities=17%  Similarity=0.163  Sum_probs=122.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++..+.  +++|+||++++|+.++|+||||||||||+|+|+|+++   |++|+ .+++...        
T Consensus       320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            58999999999763222  6799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   .+..+|...     +.+ ....+...++++..++.         .+.    ....|||||+
T Consensus       395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~  464 (529)
T TIGR02857       395 RDQIAW-VPQHPFLFA---GTIAENIRL-----ARP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA  464 (529)
T ss_pred             HhheEE-EcCCCcccC---cCHHHHHhc-----cCC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence            123444 677765432   355444432     112 22334455555554432         222    3457999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.94  E-value=1.6e-26  Score=196.35  Aligned_cols=148  Identities=17%  Similarity=0.198  Sum_probs=106.6

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~  177 (255)
                      |++++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....+. +.++........+++.++..+..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence            5789999999999999999999999999997   99999 5666432   123343 45443221111134444433211


Q ss_pred             Hh-cCC---CCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          178 AR-RGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       178 ~~-~g~---~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      .. .+.   ........+.++++.+++..  +..+..||+||+||+++|++++.+|+++|+||||++||+.+++.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            10 011   11112234667788888763  5567799999999999999999999999999999999999999999998


Q ss_pred             Hh
Q 025256          252 DE  253 (255)
Q Consensus       252 ~~  253 (255)
                      .+
T Consensus       157 ~~  158 (223)
T TIGR03771       157 IE  158 (223)
T ss_pred             HH
Confidence            75

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=2.4e-26  Score=220.80  Aligned_cols=160  Identities=14%  Similarity=0.136  Sum_probs=122.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++|+++.|++. +.  +|+|+||++++|+.++|+|+||||||||+++|+|++.   |++|+ .+++...        
T Consensus       340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            48999999999752 22  6799999999999999999999999999999999998   99999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..       ....+.+.+.++++.+++.         .+.    ....|||||+
T Consensus       414 ~~~i~~-v~Q~~~lF~---~Ti~~NI~~-------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr  482 (592)
T PRK10790        414 RQGVAM-VQQDPVVLA---DTFLANVTL-------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK  482 (592)
T ss_pred             HhheEE-EccCCcccc---chHHHHHHh-------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            223344 777765433   244444433       1234455566666655532         222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus       483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~  521 (592)
T PRK10790        483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA  521 (592)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=3.3e-26  Score=219.67  Aligned_cols=160  Identities=14%  Similarity=0.098  Sum_probs=120.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -++++||++.|.+. +.  +|+|+||++++|+.++|+||||||||||+++|+|++    |++|+ .+++...        
T Consensus       349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence            48999999766432 22  679999999999999999999999999999999998    88999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~  214 (255)
                      +...+ +++++.+...   -+..+|+.+     +. .+.+.+.+.++++..++         +.+..    ...||||||
T Consensus       422 r~~i~-~v~Q~~~LF~---~TI~eNI~~-----g~-~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr  491 (588)
T PRK11174        422 RKHLS-WVGQNPQLPH---GTLRDNVLL-----GN-PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA  491 (588)
T ss_pred             HhheE-EecCCCcCCC---cCHHHHhhc-----CC-CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence            12344 4788776543   255554433     21 23445555555554432         33332    347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+|+|+||||++||..+.+.+.+.+.+
T Consensus       492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~  530 (588)
T PRK11174        492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA  530 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988765

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.94  E-value=1.8e-26  Score=219.76  Aligned_cols=156  Identities=16%  Similarity=0.138  Sum_probs=116.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++. +.  +|+|+||++++|+.++|+||||||||||+++|+|++.   |++|+ .+++...        
T Consensus       322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence            58999999999742 12  6799999999999999999999999999999999997   89998 4555321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCC-------CCCCCccccchhhhh
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~-------~~~lS~G~~qrv~~a  220 (255)
                      +...+. +.++.+...   .+..++        +  ...+.+...++++.++++....       ...|||||+||+++|
T Consensus       396 ~~~i~~-v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA  461 (547)
T PRK10522        396 RKLFSA-VFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL  461 (547)
T ss_pred             hhheEE-EecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence            122333 555543221   122221        1  1233445566777776653321       347999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      |+++.+|+++|+||||++||+.+.+.+.+.+.
T Consensus       462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~  493 (547)
T PRK10522        462 LALAEERDILLLDEWAADQDPHFRREFYQVLL  493 (547)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999998887764

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.94  E-value=1.8e-26  Score=223.73  Aligned_cols=165  Identities=12%  Similarity=0.022  Sum_probs=121.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      .+++++||++.|++. +.  +++++||++++|++++|+||||||||||+++|+|+++   |++|++ +++   +...+. 
T Consensus       450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~-  519 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY-  519 (659)
T ss_pred             CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence            469999999999642 12  6799999999999999999999999999999999987   888884 332   223444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCC-----------CCCCCCccccchhhhhhh
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSV-----------YAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~-----------~~~~lS~G~~qrv~~a~~  222 (255)
                      +.++.+...   .++.++..+.....+. ......+...++++.+++....           ....|||||+||+++||+
T Consensus       520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            666654222   2555544321111111 1122345566777777764211           235899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+||||++||+...+.+.+++.+
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.94  E-value=2.2e-26  Score=220.02  Aligned_cols=163  Identities=17%  Similarity=0.120  Sum_probs=122.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -++++||+++|++..+.  +|+++||++++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus       330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            58999999999753222  6799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..     +.+.+.+.+.+.++++.+++.         .+..    ...||||||
T Consensus       405 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr  475 (571)
T TIGR02203       405 RRQVAL-VSQDVVLFN---DTIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR  475 (571)
T ss_pred             HhhceE-EccCccccc---ccHHHHHhc-----CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            122343 677765432   233333321     112245556666666655442         2222    236999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.|..
T Consensus       476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.93  E-value=3.9e-26  Score=223.03  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=121.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..+.  +|+|+||+|++|+.++|+|+||||||||+|+|+|++.   |++|+ .+++...        
T Consensus       463 ~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l  537 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL  537 (694)
T ss_pred             eEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence            58999999999753222  6799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|+..     +-+ +.+.+.+.++++..++         +.+.    ....||||||
T Consensus       538 r~~i~~-v~Q~~~lf~---~TI~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr  607 (694)
T TIGR03375       538 RRNIGY-VPQDPRLFY---GTLRDNIAL-----GAP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR  607 (694)
T ss_pred             HhccEE-ECCChhhhh---hhHHHHHhC-----CCC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence            223444 677665432   244444322     111 2345555555555443         2222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus       608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.93  E-value=5.4e-26  Score=213.39  Aligned_cols=165  Identities=15%  Similarity=0.059  Sum_probs=119.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      |.+|+++++++.|++..    ++++++|++.+|+.|||+|+||||||||||+|+|.+.   |++|++ ..+.   ...+.
T Consensus         1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~   70 (530)
T COG0488           1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY   70 (530)
T ss_pred             CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence            56899999999998855    6799999999999999999999999999999999997   999984 3321   12333


Q ss_pred             EEecCCCCCcCccCCcccChHH-------HH----------------------HhcC-CCCCCcHHHHHHHHHhhcCCC-
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKE-------AH----------------------ARRG-APWTFNPLLLLNCLKNLRNQG-  202 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~-------~~----------------------~~~g-~~~~~~~~~~~~~l~~l~l~~-  202 (255)
                       +.++.....  ..++.+....       ..                      ..+. +...........++..+++.. 
T Consensus        71 -l~Q~~~~~~--~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~  147 (530)
T COG0488          71 -LSQEPPLDP--EKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE  147 (530)
T ss_pred             -eCCCCCcCC--CccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence             444433211  1122111100       00                      0000 000011234456666677765 


Q ss_pred             CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       203 ~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      +..+..||||||.||++|++|..+||+|+|||||+.||.++..-+-+.|.
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~  197 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK  197 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence            67888999999999999999999999999999999999999988888774

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.93  E-value=6.5e-26  Score=217.67  Aligned_cols=161  Identities=19%  Similarity=0.181  Sum_probs=120.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++. +.  +|+|+||++++|++++|+|+||||||||+|+|+|++.   |++|+ .+++...        
T Consensus       334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            58999999999752 22  6799999999999999999999999999999999998   99999 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|...     +.+ +...+...++++.+++         +.+.    ....|||||+
T Consensus       408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~  477 (588)
T PRK13657        408 RRNIAV-VFQDAGLFN---RSIEDNIRV-----GRP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER  477 (588)
T ss_pred             HhheEE-EecCccccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence            123343 777765432   244444322     112 2334445555554432         2222    2346999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus       478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~  516 (588)
T PRK13657        478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE  516 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988764

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.93  E-value=5.3e-26  Score=216.45  Aligned_cols=162  Identities=16%  Similarity=0.127  Sum_probs=117.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++|+++.|++..+.  +++++||++++|+.++|+||||||||||+++|+|++.   |++|+ .+++...        
T Consensus       316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            58999999999652222  6799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---------HHhhcCCCC----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l~l~~~----~~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   -+..+|...     + ......+.+.+.         ++.+..+.+    .....|||||+
T Consensus       391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~-~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~  460 (544)
T TIGR01842       391 GKHIGY-LPQDVELFP---GTVAENIAR-----F-GENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR  460 (544)
T ss_pred             hhheEE-ecCCccccc---ccHHHHHhc-----c-CCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence            112333 666654322   244343321     1 112233333333         333322222    23457999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+...+++.+.+.+
T Consensus       461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  499 (544)
T TIGR01842       461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA  499 (544)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=3.8e-26  Score=183.70  Aligned_cols=123  Identities=21%  Similarity=0.294  Sum_probs=97.7

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCC
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG  159 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~  159 (255)
                      ++++++.|.+..    +++++||++++|++++|+||||||||||+++|+|++.                +..|. +.+++
T Consensus         2 ~~~~~~~~~~~~----~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~----------------~~~G~-i~~~~   60 (157)
T cd00267           2 IENLSFRYGGRT----ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK----------------PTSGE-ILIDG   60 (157)
T ss_pred             eEEEEEEeCCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC----------------CCccE-EEECC
Confidence            578899997643    7799999999999999999999999999999999984                44555 56666


Q ss_pred             CCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCC
Q 025256          160 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF  238 (255)
Q Consensus       160 ~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~  238 (255)
                      ..+..     .. ........++ ++                        ||+||+||++++++++.+|+++|+||||++
T Consensus        61 ~~~~~-----~~-~~~~~~~i~~~~q------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~  110 (157)
T cd00267          61 KDIAK-----LP-LEELRRRIGYVPQ------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG  110 (157)
T ss_pred             EEccc-----CC-HHHHHhceEEEee------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            43211     00 1111122222 22                        999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 025256          239 LDGGVWKDVSSMFDE  253 (255)
Q Consensus       239 LD~~~~~~l~~ll~~  253 (255)
                      ||..++..+.+++.+
T Consensus       111 lD~~~~~~l~~~l~~  125 (157)
T cd00267         111 LDPASRERLLELLRE  125 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998865

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.93  E-value=6.6e-26  Score=221.80  Aligned_cols=160  Identities=17%  Similarity=0.141  Sum_probs=119.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..|+++||++.|++.. ...+|+|+||+|++|+.++|+||||||||||+++|.|+++   |++|+ .++|...       
T Consensus       477 ~~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~  552 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRP-DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY  552 (711)
T ss_pred             CeEEEEEEEEECCCCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            3589999999997532 1226799999999999999999999999999999999998   99999 4666321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~  213 (255)
                       +...+. ++++.+...   -+..+|+.+     +.+ ....+.+.++++..++         +.+.    ....|||||
T Consensus       553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ  622 (711)
T TIGR00958       553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ  622 (711)
T ss_pred             HHhhceE-EecCccccc---cCHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence             223444 777776433   244444422     222 2334555555555443         2222    234799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      |||+++||+++.+|+|+|+||||++||+...+.+.+
T Consensus       623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~  658 (711)
T TIGR00958       623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE  658 (711)
T ss_pred             HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence            999999999999999999999999999999888877

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.93  E-value=6.3e-26  Score=217.56  Aligned_cols=161  Identities=17%  Similarity=0.132  Sum_probs=117.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++.. .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       334 ~i~~~~v~~~y~~~~-~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       334 AVEFRHITFEFANSS-Q--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             eEEEEEEEEECCCCC-c--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            589999999997521 2  5799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc---------CCC----CCCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~----~~~~~~lS~G~~  214 (255)
                      +...+. +.++.+...   .+..+|...     +.+. ...+...+.++..+         .+.    ......|||||+
T Consensus       408 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~  477 (585)
T TIGR01192       408 RKSIAT-VFQDAGLFN---RSIRENIRL-----GREG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER  477 (585)
T ss_pred             HhheEE-EccCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence            122343 666655332   244444322     2121 22333333333221         111    223457999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~  516 (585)
T TIGR01192       478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA  516 (585)
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.93  E-value=8.2e-26  Score=200.65  Aligned_cols=176  Identities=15%  Similarity=0.187  Sum_probs=136.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC------Ccc-ccCCCC-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ------KAS-SFDSQV-  146 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~------~G~-~~~~~~-  146 (255)
                      +++++++|++..|+.....+.++++|||+|++||.++|+|.||||||-.++.+++++    |.      +|+ .|+|.. 
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl   79 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL   79 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence            578999999999986555566889999999999999999999999999999999999    65      344 355532 


Q ss_pred             ----------CCCCeeEEEecCCCCCcCccCCcccC-hHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----CCCCCCCCC
Q 025256          147 ----------KPPDVATVLPMDGFHLYLSQLDAMED-PKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFD  210 (255)
Q Consensus       147 ----------~~~~~g~~i~~d~~~~~~~~l~~~e~-~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS  210 (255)
                                .+.....+|++....-.++-.+.... .+......++..........++++.+++.     .+.++.+||
T Consensus        80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS  159 (534)
T COG4172          80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS  159 (534)
T ss_pred             hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence                      13334445666654322211121111 12233345666666677889999999986     467889999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+|||.||.||+.+|++||.||||..||...+.+|.++|.+.
T Consensus       160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L  203 (534)
T COG4172         160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL  203 (534)
T ss_pred             cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999764

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.93  E-value=1.1e-25  Score=197.39  Aligned_cols=152  Identities=11%  Similarity=0.095  Sum_probs=106.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .+.|+++|+++.  +..    +|+++||+|++|++++|+||||||||||+++|+|+++   |++|++ +++     ..+.
T Consensus        37 ~~~l~i~nls~~--~~~----vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y  102 (282)
T cd03291          37 DNNLFFSNLCLV--GAP----VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF  102 (282)
T ss_pred             CCeEEEEEEEEe--ccc----ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence            357999999985  222    6799999999999999999999999999999999997   899983 443     2333


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CC----CCCCCCCCccccchhhhh
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~----~~~~~~lS~G~~qrv~~a  220 (255)
                       +.++... +.  .++.++..+     +..  .........++.+++         ..    ...+..||+||+||+++|
T Consensus       103 -v~q~~~l-~~--~tv~enl~~-----~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA  171 (282)
T cd03291         103 -SSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA  171 (282)
T ss_pred             -EeCcccc-cc--cCHHHHhhc-----ccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence             4444322 21  233333221     110  111111222222221         11    123468999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      ++++.+|+++|+||||++||+..++.+.+.+
T Consensus       172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~l  202 (282)
T cd03291         172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESC  202 (282)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            9999999999999999999999999888753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1e-25  Score=206.17  Aligned_cols=164  Identities=15%  Similarity=0.103  Sum_probs=119.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCC---CC---
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVK---PP---  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~---~~---  149 (255)
                      .++++||+++|++..  ..+|+|+||++++||.++|+|++|||||||++.|+|.+.   |++|++ +++...   ++   
T Consensus       336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence            689999999999843  336799999999999999999999999999999999997   888883 444211   11   


Q ss_pred             -CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCccccc
Q 025256          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVGD  215 (255)
Q Consensus       150 -~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~q  215 (255)
                       +...++.+..+. +.  -+..+|..     ...+ +...+.+.++++.+++.         .+    -....|||||+|
T Consensus       411 ~e~i~vl~Qr~hl-F~--~Tlr~NL~-----lA~~-~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r  481 (573)
T COG4987         411 RETISVLTQRVHL-FS--GTLRDNLR-----LANP-DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR  481 (573)
T ss_pred             HHHHhhhccchHH-HH--HHHHHHHh-----hcCC-CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence             011112222211 11  12222221     1223 34556777777777764         11    223489999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++||+++++++++|+||||.|||+...+++++++.+.
T Consensus       482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~  520 (573)
T COG4987         482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH  520 (573)
T ss_pred             HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.93  E-value=7.7e-26  Score=195.84  Aligned_cols=157  Identities=17%  Similarity=0.114  Sum_probs=109.3

Q ss_pred             ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCCC
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP  148 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~~  148 (255)
                      .+|+++|+...   .+++++++ +++|++++|+||||||||||+++|+|+++   |++|++            +++....
T Consensus         4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~   76 (255)
T cd03236           4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ   76 (255)
T ss_pred             cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence            47899997531   26799995 99999999999999999999999999997   899985            2222110


Q ss_pred             C--------C--eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCCCCCCCccccch
Q 025256          149 P--------D--VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (255)
Q Consensus       149 ~--------~--~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qr  216 (255)
                      .        .  .+. +.+. .....  ....++...   .  +..........++++.+++..  +..+..||+||+||
T Consensus        77 ~~~~~~~~~~~~i~~-~~~~-~~~~~--~~~~~~i~~---~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  147 (255)
T cd03236          77 NYFTKLLEGDVKVIV-KPQY-VDLIP--KAVKGKVGE---L--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR  147 (255)
T ss_pred             hhhHHhhhcccceee-ecch-hccCc--hHHHHHHHH---H--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence            0        0  010 1000 00000  001111111   0  111112345677888887753  45667999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus       148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~  184 (255)
T cd03236         148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE  184 (255)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998875

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.93  E-value=7.4e-26  Score=215.88  Aligned_cols=160  Identities=14%  Similarity=0.002  Sum_probs=115.8

Q ss_pred             ceEEEccceeecccccc-ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~-~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      ..++++||++.|++... ...+|+++||++++|++++|+||||||||||+++|+|++.   |++|+ .++|....     
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~  412 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRD  412 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            35899999999975311 1226799999999999999999999999999999999997   89998 45553221     


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCC--------CCCCCCccccchh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPV  217 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~--------~~~~lS~G~~qrv  217 (255)
                         ...+. +.++.+....   +..+|.         ......+...++++.+++....        ....||||||||+
T Consensus       413 ~~~~~i~~-v~q~~~lf~~---ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl  479 (555)
T TIGR01194       413 DYRDLFSA-IFADFHLFDD---LIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL  479 (555)
T ss_pred             HHHhhCcE-EccChhhhhh---hhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence               11232 4444432211   222211         1122344556677777665321        1257999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      ++||+++.+|+++|+||||++||+.+.+++.+.+
T Consensus       480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999987643

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=9.6e-26  Score=206.58  Aligned_cols=160  Identities=15%  Similarity=0.144  Sum_probs=123.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|+++. +  +|+++||+|++||.|||+|+|||||||++|+|.++.    .++|+ .++|...        
T Consensus       351 ~I~F~dV~f~y~~k~-~--iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl  423 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKR-K--VLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL  423 (591)
T ss_pred             cEEEEeeEEEeCCCC-c--eecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence            499999999998742 3  559999999999999999999999999999999999    79999 5777432        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~  214 (255)
                      +...|. ++||......   ++..|+     .+|.+.. ..+.+.+..++.++.         ..    .+...+|||||
T Consensus       424 R~~Ig~-VPQd~~LFnd---TIl~NI-----~YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek  493 (591)
T KOG0057|consen  424 RQSIGV-VPQDSVLFND---TILYNI-----KYGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK  493 (591)
T ss_pred             hhheeE-eCCcccccch---hHHHHh-----hcCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence            334554 7888764432   433333     3454433 345555666665543         11    23447999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|+++.+|+|+++||||+.||.++.+++.+.+-.
T Consensus       494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~  532 (591)
T KOG0057|consen  494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD  532 (591)
T ss_pred             HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999888754

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.7e-25  Score=207.11  Aligned_cols=161  Identities=12%  Similarity=0.080  Sum_probs=121.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-------  149 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~-------  149 (255)
                      ++.+|+++.|++..   .++.++||++++|+.++|+|+||||||||++.|+|+++   |+.|+ .+++.....       
T Consensus       321 i~~~~l~~~y~~g~---~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~  394 (559)
T COG4988         321 ISLENLSFRYPDGK---PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR  394 (559)
T ss_pred             eeecceEEecCCCC---cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence            55669999998752   27799999999999999999999999999999999997   89999 566533211       


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--------CCCCCC----CCCccccchh
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAP----SFDHGVGDPV  217 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--------~~~~~~----~lS~G~~qrv  217 (255)
                      +....++++++....   +..+|+..     + ..+...+...++++..++.        .+..+.    .+||||+||+
T Consensus       395 k~i~~v~Q~p~lf~g---TireNi~l-----~-~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRl  465 (559)
T COG4988         395 KQISWVSQNPYLFAG---TIRENILL-----A-RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRL  465 (559)
T ss_pred             hHeeeeCCCCccccc---cHHHHhhc-----c-CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHH
Confidence            122336777664432   43343322     1 1224456666777766553        233333    4999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|||+..+++++|+||||++||.++.+.+.+.+.+
T Consensus       466 aLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~  501 (559)
T COG4988         466 ALARALLSPASLLLLDEPTAHLDAETEQIILQALQE  501 (559)
T ss_pred             HHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHH
Confidence            999999999999999999999999999999988865

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.93  E-value=1.9e-25  Score=213.83  Aligned_cols=164  Identities=20%  Similarity=0.196  Sum_probs=120.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..++++||++.|+...+ ..+|+++||++++||.++|+|+||||||||+|+|+|++.   |++|+ .+++...       
T Consensus       336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~  411 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE  411 (576)
T ss_pred             ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            35899999999975211 126799999999999999999999999999999999998   99999 4665221       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~  213 (255)
                       +...+. ++++.+...   -+..+|...     +.+ +.+.+...++++.+++         +.+.    ....|||||
T Consensus       412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~~-~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq  481 (576)
T TIGR02204       412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GRP-DATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ  481 (576)
T ss_pred             HHHhceE-EccCCcccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence             123344 677665433   244443322     222 2334555555555443         2222    234799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++||+++.+|+++|+||||++||+...+.+.+.+..
T Consensus       482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~  521 (576)
T TIGR02204       482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET  521 (576)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.93  E-value=2.2e-25  Score=213.26  Aligned_cols=162  Identities=14%  Similarity=0.178  Sum_probs=119.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++++++.|+...+  .+|+++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       313 ~I~~~~v~~~y~~~~~--~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTDH--PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCCC--ccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            4899999999975322  26799999999999999999999999999999999998   99999 4665321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CC----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~  214 (255)
                      +...+. +.++.+...   -+..+|+..     +.+ ....+....+++..++.         .+    .....|||||+
T Consensus       388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~  457 (569)
T PRK10789        388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK  457 (569)
T ss_pred             HhheEE-EccCCeecc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            122343 566554322   244443322     212 23344444555543321         11    23357999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+...+.+.+.+..
T Consensus       458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~  496 (569)
T PRK10789        458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ  496 (569)
T ss_pred             HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.93  E-value=1.9e-25  Score=218.20  Aligned_cols=162  Identities=15%  Similarity=0.113  Sum_probs=120.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++..+.  +|+++||++++|+.++|+|+||||||||+|+|+|++.   |++|+ .++|...        
T Consensus       455 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       455 AITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             eEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence            58999999999753222  6799999999999999999999999999999999998   99999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCC----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~----~~~~~lS~G~~  214 (255)
                      +...+. +.++.+...   -+..+|...     +.+ ....+.+.++++..++         +.+    .....|||||+
T Consensus       530 r~~i~~-v~q~~~lf~---~ti~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  599 (694)
T TIGR01846       530 RRQMGV-VLQENVLFS---RSIRDNIAL-----CNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR  599 (694)
T ss_pred             HHhCeE-EccCCeehh---hhHHHHHhc-----CCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence            123344 666655433   244443322     112 2334444444444332         222    22457999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+++.+.+.+
T Consensus       600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  638 (694)
T TIGR01846       600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE  638 (694)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.93  E-value=1.9e-26  Score=220.41  Aligned_cols=160  Identities=17%  Similarity=0.171  Sum_probs=120.2

Q ss_pred             eEEEccceeeccc-cccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~-~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      -|+++||++.|++ ..    +++|+||++++|+.+||+||||||||||++.|.+++.   |++|+ .+||...       
T Consensus       328 ~I~f~~vsf~y~~~~~----vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~  400 (567)
T COG1132         328 SIEFENVSFSYPGKKP----VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS  400 (567)
T ss_pred             eEEEEEEEEEcCCCCc----cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence            4999999999984 33    6799999999999999999999999999999999998   89999 4666321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCCCC----CCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~----~~~lS~G~  213 (255)
                       +...+ ++++|.+...   -++.+|+.+     |.++ ...+.+.+.++         ++-.+.+..    ...|||||
T Consensus       401 lr~~I~-~V~Qd~~LF~---~TI~~NI~~-----g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ  470 (567)
T COG1132         401 LRKRIG-IVSQDPLLFS---GTIRENIAL-----GRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ  470 (567)
T ss_pred             HHHhcc-EEcccceeec---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence             33455 4777765433   244444433     2222 23334433333         332123333    34799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|||++.+|+++||||||+.+|..+.+.+.+.+..
T Consensus       471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~  510 (567)
T COG1132         471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALKK  510 (567)
T ss_pred             HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHH
Confidence            9999999999999999999999999999999999988863

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=8.6e-26  Score=192.24  Aligned_cols=154  Identities=12%  Similarity=0.129  Sum_probs=124.5

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC------------CC
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP  148 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~------------~~  148 (255)
                      |+.+.+++..      -+++|+.+...+++|.|+||||||||+|+|+|+++   |+.|. .+++..            .+
T Consensus         5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            5566666643      67899998878999999999999999999999998   99999 455532            13


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...|+ +++|...++  ++++..|..+....      .....+..+.+.++++  .+.++..||||+||||+|+|||+..
T Consensus        76 RriGY-VFQDARLFp--H~tVrgNL~YG~~~------~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~  146 (352)
T COG4148          76 RRIGY-VFQDARLFP--HYTVRGNLRYGMWK------SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             heeee-Eeecccccc--ceEEecchhhhhcc------cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence            34666 777776433  37887777654322      1455677888888887  6788899999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|++|||.+.||.+-+++++-+++.
T Consensus       147 P~LLLmDEPLaSLD~~RK~EilpylER  173 (352)
T COG4148         147 PELLLMDEPLASLDLPRKREILPYLER  173 (352)
T ss_pred             CCeeeecCchhhcccchhhHHHHHHHH
Confidence            999999999999999999999988865

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.93  E-value=1.7e-25  Score=231.16  Aligned_cols=175  Identities=13%  Similarity=0.099  Sum_probs=130.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCC
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD  150 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~  150 (255)
                      .+++++||++.|+.......+|+|||+++++|++++|+|||||||||||++|+|++....|++|+ .++|...    +..
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~  837 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS  837 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence            36899999999963212223679999999999999999999999999999999998422357798 4666432    223


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC----CcHHHHHHHHHhhcCCC--CCCCC----CCCccccchhhhh
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG--SVYAP----SFDHGVGDPVEDD  220 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~--~~~~~----~lS~G~~qrv~~a  220 (255)
                      .+. +.+++....  .+++.|+..+..... .+..    .....+.++++.+++..  +..+.    .||+|||||+++|
T Consensus       838 i~y-v~Q~~~~~~--~~Tv~E~L~~~a~l~-~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia  913 (1394)
T TIGR00956       838 IGY-VQQQDLHLP--TSTVRESLRFSAYLR-QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIG  913 (1394)
T ss_pred             eee-ecccccCCC--CCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHH
Confidence            444 666554332  378888877654332 1211    12234678888888753  34443    6999999999999


Q ss_pred             hhhccCCc-EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~-ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|+ +|++||||++||......+.++|.+.
T Consensus       914 ~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l  948 (1394)
T TIGR00956       914 VELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL  948 (1394)
T ss_pred             HHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            99999997 99999999999999999999998763

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=5.3e-26  Score=184.55  Aligned_cols=168  Identities=16%  Similarity=0.209  Sum_probs=127.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      +++++++|+.+|++..    |++++||++.+||.-+|+|||||||||++..|.|-.+   |+.|+ .+++...       
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~   76 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH   76 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence            5799999999999987    9999999999999999999999999999999999997   88888 4555221       


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-CC-------CCCCcHHHHHHHHHhhcCCCC--CCCCCCCcccc
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG  214 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g~-------~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~  214 (255)
                         +...|.-+.....   ...+++.+|.+...... .+       ..........++|+.+++...  .....||+|||
T Consensus        77 ~IAr~GIGRKFQ~PtV---fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK  153 (249)
T COG4674          77 RIARAGIGRKFQKPTV---FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK  153 (249)
T ss_pred             HHHHhccCccccCCee---hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence               1112221111111   12367777776543221 11       122233467788888888754  45568999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++.|+..++.+|++|++|||++|+-....++..++|..
T Consensus       154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~  192 (249)
T COG4674         154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKS  192 (249)
T ss_pred             hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888888764

>PLN03073 ABC transporter F family; Provisional

Probab=99.92  E-value=2.7e-25  Score=216.42  Aligned_cols=161  Identities=13%  Similarity=0.041  Sum_probs=111.3

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCee
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVA  152 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g  152 (255)
                      .+.+|+++|+++.|++..    +|+|+||+|.+|+++||+||||||||||||+|+|.....+|+.|++ +..+...    
T Consensus       174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~----  245 (718)
T PLN03073        174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV----  245 (718)
T ss_pred             CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC----
Confidence            356899999999998643    6799999999999999999999999999999999641012555552 1111000    


Q ss_pred             EEEecCCCCCcCccCCccc--------------------------------------------------ChHHHHHhcCC
Q 025256          153 TVLPMDGFHLYLSQLDAME--------------------------------------------------DPKEAHARRGA  182 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e--------------------------------------------------~~~~~~~~~g~  182 (255)
                            +     ...+..+                                                  ........++.
T Consensus       246 ------g-----~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  314 (718)
T PLN03073        246 ------G-----DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL  314 (718)
T ss_pred             ------C-----CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence                  0     0001000                                                  00000011111


Q ss_pred             CCC-CcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          183 PWT-FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       183 ~~~-~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ... .....+..+++.+++.   .+..+..|||||+||+++|++|+.+|++|||||||++||+..++.+.++|..
T Consensus       315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            000 1122344566666664   3556789999999999999999999999999999999999999999998865

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.92  E-value=3.5e-25  Score=181.36  Aligned_cols=120  Identities=15%  Similarity=0.067  Sum_probs=91.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++++||++++|++++|+||||||||||||+|.       +++|+              +.+++..      +...    
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~--------------v~~~~~~------~~~~----   58 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGK--------------ARLISFL------PKFS----   58 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCc--------------EEECCcc------cccc----
Confidence            779999999999999999999999999999874       23343              2222221      0000    


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC--CcEEEEeCCCCCCChHHHHHHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~--~~ililDEp~~~LD~~~~~~l~~l  250 (255)
                       .....+..+      .++++.+++.   .+.++..||+||+||+++|++++.+  |+++|+|||+++||+..++.+.++
T Consensus        59 -~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~  131 (176)
T cd03238          59 -RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV  131 (176)
T ss_pred             -cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             001111100      4677777765   3567789999999999999999999  999999999999999999999998


Q ss_pred             HHh
Q 025256          251 FDE  253 (255)
Q Consensus       251 l~~  253 (255)
                      +.+
T Consensus       132 l~~  134 (176)
T cd03238         132 IKG  134 (176)
T ss_pred             HHH
Confidence            875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=4.7e-25  Score=228.34  Aligned_cols=169  Identities=15%  Similarity=0.107  Sum_probs=122.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-cc-CCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-~~~~~-------  147 (255)
                      .|+++||++.|+... ...+|+++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+ ++...       
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            589999999998532 2237799999999999999999999999999999999998   99999 45 33221       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhc-C--------------------------------------------
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--------------------------------------------  181 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~-g--------------------------------------------  181 (255)
                       +...|. +.++.....   .++.+|+.+..... +                                            
T Consensus       458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1466)
T PTZ00265        458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE  533 (1466)
T ss_pred             HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence             122444 666654322   36666655421000 0                                            


Q ss_pred             C------CCCCcHHHHHHHHHhhcCC---------C----CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256          182 A------PWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       182 ~------~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~  242 (255)
                      .      ......+.+.++++.+++.         .    ......||||||||+++|||++.+|+||||||||++||+.
T Consensus       534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~  613 (1466)
T PTZ00265        534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK  613 (1466)
T ss_pred             hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence            0      0012234455555554432         1    2345689999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHh
Q 025256          243 VWKDVSSMFDE  253 (255)
Q Consensus       243 ~~~~l~~ll~~  253 (255)
                      +.+.+.+.|++
T Consensus       614 se~~i~~~L~~  624 (1466)
T PTZ00265        614 SEYLVQKTINN  624 (1466)
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>PRK13409 putative ATPase RIL; Provisional

Probab=99.92  E-value=2.5e-25  Score=212.87  Aligned_cols=156  Identities=14%  Similarity=0.087  Sum_probs=111.2

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCCC-
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP-  148 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~~-  148 (255)
                      +++++|+..  . .+|++++ .+++|+++||+||||||||||+|+|+|+++   |++|++            ++|.... 
T Consensus        78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~  150 (590)
T PRK13409         78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN  150 (590)
T ss_pred             CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence            489999862  1 2679999 899999999999999999999999999997   999984            3332110 


Q ss_pred             -------CCeeEEEecCCCCCcCccC---CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccch
Q 025256          149 -------PDVATVLPMDGFHLYLSQL---DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l---~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr  216 (255)
                             ..... ....++....+.+   ++.++..       .  ......+.++++.+++.  .+..+..||+||+||
T Consensus       151 ~~~~~~~~~~~~-~~~~q~~~~~p~~~~~tv~e~l~-------~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qr  220 (590)
T PRK13409        151 YFKKLYNGEIKV-VHKPQYVDLIPKVFKGKVRELLK-------K--VDERGKLDEVVERLGLENILDRDISELSGGELQR  220 (590)
T ss_pred             HHHHHhccCcce-eecccchhhhhhhhcchHHHHHH-------h--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence                   00000 0000100000000   1111111       0  01224567788888876  467788999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       221 v~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l  258 (590)
T PRK13409        221 VAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL  258 (590)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=8.9e-25  Score=216.31  Aligned_cols=164  Identities=16%  Similarity=0.165  Sum_probs=121.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|+..+ .+.+++|+||+|++|+.+||+|||||||||.+.+|-..+.   |+.|. .+|+...        
T Consensus       987 ~I~~~~V~F~YPsRP-~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTRP-DVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCCC-CchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence            389999999999753 5668899999999999999999999999999999999997   88887 4555332        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHH---------hhcCCCCCCC----CCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVYA----PSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~~----~~lS~G~~  214 (255)
                      +...+. |.+......   -+..||+.+.     ... ...+.+.+.++         .|-.+.+..+    .+||||||
T Consensus      1063 R~~i~l-VsQEP~LF~---~TIrENI~YG-----~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAYG-----SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred             HHhcce-eccCchhhc---ccHHHHHhcc-----CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence            223333 454443222   3445544432     111 22333333332         3333444443    38999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++||||++.+|+||||||-|+.||.++.+.+.+.||..
T Consensus      1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred             HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999863

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.92  E-value=5.9e-25  Score=206.39  Aligned_cols=163  Identities=16%  Similarity=0.125  Sum_probs=123.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ..+++++|+++.|++. +.  +++++||.|.+|+.|||+||||+|||||||+|+|.+.   |.+|.+..+.  ....|+ 
T Consensus       319 ~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~--~v~igy-  389 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE--TVKIGY-  389 (530)
T ss_pred             CeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC--ceEEEE-
Confidence            4689999999999764 12  5699999999999999999999999999999999997   8888743322  122343 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +.++...+. .+.++.+   +....  .+. .....+...+..+++..   ...+..||||||.|+.+|+.+..+|.+||
T Consensus       390 f~Q~~~~l~-~~~t~~d---~l~~~--~~~-~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi  462 (530)
T COG0488         390 FDQHRDELD-PDKTVLE---ELSEG--FPD-GDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL  462 (530)
T ss_pred             EEehhhhcC-ccCcHHH---HHHhh--Ccc-ccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence            444432211 1112222   21111  122 22567788999998873   46777999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||+.||.++.+.+.+.|..
T Consensus       463 LDEPTNhLDi~s~~aLe~aL~~  484 (530)
T COG0488         463 LDEPTNHLDIESLEALEEALLD  484 (530)
T ss_pred             EcCCCccCCHHHHHHHHHHHHh
Confidence            9999999999999999888753

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=6.7e-25  Score=227.21  Aligned_cols=163  Identities=14%  Similarity=0.090  Sum_probs=113.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-------------------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-------------------  137 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-------------------  137 (255)
                      -|+++||++.|++.. ...+|+|+||+|++|+.+||+||||||||||+++|.|++.   |+                   
T Consensus      1165 ~I~f~nVsF~Y~~~~-~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRP-NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred             eEEEEEEEEECCCCC-CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence            499999999997532 1226799999999999999999999999999999999997   63                   


Q ss_pred             -----------------------------------Ccc-ccCCCCC--------CCCeeEEEecCCCCCcCccCCcccCh
Q 025256          138 -----------------------------------KAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP  173 (255)
Q Consensus       138 -----------------------------------~G~-~~~~~~~--------~~~~g~~i~~d~~~~~~~~l~~~e~~  173 (255)
                                                         +|+ .++|...        +...+. |+++.+...   .++.+|+
T Consensus      1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Qep~LF~---gTIreNI 1316 (1466)
T PTZ00265       1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI-VSQEPMLFN---MSIYENI 1316 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE-eCCCCcccc---ccHHHHH
Confidence                                               444 2333111        112222 444433221   2333333


Q ss_pred             HHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          174 KEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      .+     |.+ +...+.+.++++..++         +.+..    ...||||||||++|||||+.+|+||||||||+.||
T Consensus      1317 ~~-----g~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265       1317 KF-----GKE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred             hc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence            22     212 2333444444444332         22332    34799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHh
Q 025256          241 GGVWKDVSSMFDE  253 (255)
Q Consensus       241 ~~~~~~l~~ll~~  253 (255)
                      ..+.+.+.+.|+.
T Consensus      1391 ~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265       1391 SNSEKLIEKTIVD 1403 (1466)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988865

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-24  Score=179.97  Aligned_cols=171  Identities=19%  Similarity=0.147  Sum_probs=120.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+++++||...-++. +.  +|++|||+|++||+++|+||||||||||.++|+|.-. -.+++|+ .++|+..      
T Consensus         1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~   76 (251)
T COG0396           1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPD   76 (251)
T ss_pred             CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHh
Confidence            5689999999999874 12  6799999999999999999999999999999999852 1256777 4666432      


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCC--CCcHHHHHHHHHhhcCCC---CCCCC-CCCccccch
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDP  216 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~--~~~~~~~~~~l~~l~l~~---~~~~~-~lS~G~~qr  216 (255)
                       +...|..+.++. .   ...+...+..+.+.-    .+...  ......+.+.++.+++..   ++++. -||||+|+|
T Consensus        77 ERAr~GifLafQ~-P---~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR  152 (251)
T COG0396          77 ERARAGIFLAFQY-P---VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR  152 (251)
T ss_pred             HHHhcCCEEeecC-C---ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence             233443232221 1   113333333443321    11111  011234456777777763   33333 799999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..++..++.+|++.|||||-+|||..+-+.+.+.+..
T Consensus       153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~  189 (251)
T COG0396         153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA  189 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999998888887754

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=5.1e-25  Score=172.19  Aligned_cols=168  Identities=14%  Similarity=0.062  Sum_probs=128.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ++.++||+...++..    .|.++||+|.+|||+.|+||||||||||+..+.|.+...+.-+|+ .++++..      +.
T Consensus         2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            467889998887754    679999999999999999999999999999999999744555788 4555321      34


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..|. +++|....+  ++++.+|+.+.... .+............++..++.  ....+.++|||||.||++-|+|+..|
T Consensus        78 q~Gi-LFQD~lLFp--hlsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P  153 (213)
T COG4136          78 QIGI-LFQDALLFP--HLSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP  153 (213)
T ss_pred             heee-eeccccccc--ccccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence            4565 677765433  36777766543211 111122334567788888876  35667799999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      +.+++||||+-||..-+.++++++-
T Consensus       154 k~lLLDEPFS~LD~ALR~qfR~wVF  178 (213)
T COG4136         154 KALLLDEPFSRLDVALRDQFRQWVF  178 (213)
T ss_pred             ceeeeCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999888888764

>PLN03232 ABC transporter C family member; Provisional

Probab=99.91  E-value=2.5e-24  Score=224.18  Aligned_cols=161  Identities=15%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..+.  +|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .+||...        
T Consensus      1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            59999999999642112  6799999999999999999999999999999999998   99999 4776322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. |+++.+...   -+..+|+.       ...+...+.+.++++..++.         .+.    ....||+|||
T Consensus      1309 R~~i~i-VpQdp~LF~---gTIr~NL~-------~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232       1309 RRVLSI-IPQSPVLFS---GTVRFNID-------PFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred             HhhcEE-ECCCCeeeC---ccHHHHcC-------CCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence            223444 788776433   24444432       22234555566666655432         222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+|||+||||+.+|..+.+.+.+.+++
T Consensus      1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232       1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988875

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.91  E-value=1.7e-24  Score=215.55  Aligned_cols=172  Identities=15%  Similarity=0.110  Sum_probs=143.1

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      ....+.+++++|.|+....   |++++++.|++||+.|+.|+|||||||++++|.|..+   |++|+ .+.|...     
T Consensus       561 ~~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~  634 (885)
T KOG0059|consen  561 YSSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTD  634 (885)
T ss_pred             ccceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccc
Confidence            3467899999999998542   7799999999999999999999999999999999998   99999 4444222     


Q ss_pred             ----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                          ....|. .++.+-  ....+|..|+.....+..|+++..-...+...++.+++.  .+..++.||||+|+|+..|.
T Consensus       635 ~~~~~~~iGy-CPQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~ai  711 (885)
T KOG0059|consen  635 FQQVRKQLGY-CPQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAI  711 (885)
T ss_pred             hhhhhhhccc-CCchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHH
Confidence                222454 444433  234588899999999999987655555678888988886  56778899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++.+|++++||||++|+||..++.+++++.+.
T Consensus       712 alig~p~vi~LDEPstGmDP~arr~lW~ii~~~  744 (885)
T KOG0059|consen  712 ALIGDPSVILLDEPSTGLDPKARRHLWDIIARL  744 (885)
T ss_pred             HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999764

>PLN03130 ABC transporter C family member; Provisional

Probab=99.91  E-value=4.5e-24  Score=222.87  Aligned_cols=161  Identities=14%  Similarity=0.078  Sum_probs=124.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|.+..+  .+|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .+||...        
T Consensus      1237 ~I~f~nVsf~Y~~~~~--~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELP--PVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCCC--ceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            5999999999965321  26799999999999999999999999999999999998   99999 4776322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~  214 (255)
                      +...+. |++|.+...   -++.+|+..       ..+...+.+.++++..++         +.+..    ...||+|||
T Consensus      1312 R~~Isi-VpQdp~LF~---GTIreNLd~-------~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130       1312 RKVLGI-IPQAPVLFS---GTVRFNLDP-------FNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred             HhccEE-ECCCCcccc---ccHHHHhCc-------CCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence            233444 788876443   244444432       223445556666665443         23322    237999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+|+||||||+|+.+|..+.+.+.+.|++
T Consensus      1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130       1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.91  E-value=7.4e-25  Score=180.37  Aligned_cols=174  Identities=17%  Similarity=0.118  Sum_probs=129.2

Q ss_pred             eEEEccceeecccc-ccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~-~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      |+++.|+.+.|... ...-.+|++++++|.+|+++.|+|.||||||||++.|+|-+.   |++|+ .+++..+.      
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence            46677888888543 222337799999999999999999999999999999999998   99999 46664321      


Q ss_pred             -CC-eeEEEecCCCCCcCccCCcccChHHHHHh---cCCCCCC---cHHHHHHHHHhhcCC----CCCCCCCCCccccch
Q 025256          149 -PD-VATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTF---NPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 -~~-~g~~i~~d~~~~~~~~l~~~e~~~~~~~~---~g~~~~~---~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qr  216 (255)
                       .. ... |++|...-.-..+++.||......+   +|+....   ....+.+-+..++++    ...++..|||||||-
T Consensus        78 RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQa  156 (263)
T COG1101          78 RANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA  156 (263)
T ss_pred             HhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHH
Confidence             11 122 5565544444557888887665543   3432211   223345566666666    456777999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.++.|.+.+|+|+++||-|+.|||...+.++++=++.
T Consensus       157 lsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~ki  194 (263)
T COG1101         157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI  194 (263)
T ss_pred             HHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHH
Confidence            99999999999999999999999999999998876554

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.91  E-value=1.8e-24  Score=193.58  Aligned_cols=136  Identities=16%  Similarity=0.171  Sum_probs=102.4

Q ss_pred             EECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256          112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       112 LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (255)
                      |+||||||||||+++|+|+++   |++|+ .+++...      ....+. ++++... + ..+++.++..+.....+...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l-~-~~~tv~enl~~~~~~~~~~~   74 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYAL-F-PHMTVEENVAFGLKMRKVPR   74 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCccc-c-CCCcHHHHHHHHHhhcCCCH
Confidence            689999999999999999998   99999 4665322      122444 5555332 2 23677777766543333322


Q ss_pred             CCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ......+.++++.+++.  .+.++..||+||+||+++|++|+.+|+++|+||||++||+..++.+.++|.+
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~  145 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT  145 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            11234567788888876  4667789999999999999999999999999999999999999999998865

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.91  E-value=3.6e-24  Score=206.44  Aligned_cols=152  Identities=14%  Similarity=0.056  Sum_probs=116.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC-----CCCeeEEEecCCCCCcCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~~~  166 (255)
                      +|+|+|+++++||+++|+|||||||||||++|+|...   |.   +|+ .++|...     +...|. +.+++....  .
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~~--~  113 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFIP--T  113 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccCc--c
Confidence            6799999999999999999999999999999999985   53   687 4666432     123454 666654332  3


Q ss_pred             CCcccChHHHHHhcCCCC----CCcHHHHHHHHHhhcCC--CCCCCC------CCCccccchhhhhhhhccCCcEEEEeC
Q 025256          167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       167 l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~~------~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      +++.|+..+.... ..+.    +.....+.++++.+++.  .+..+.      .+|||||||+.+|++|+.+|+++++||
T Consensus       114 lTV~e~l~f~~~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE  192 (617)
T TIGR00955       114 LTVREHLMFQAHL-RMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE  192 (617)
T ss_pred             CcHHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence            7888887765432 2222    12234567888888875  244443      599999999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHhh
Q 025256          235 NYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++||......+.+.+.+.
T Consensus       193 PtsgLD~~~~~~l~~~L~~l  212 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKGL  212 (617)
T ss_pred             CCcchhHHHHHHHHHHHHHH
Confidence            99999999999999998753

>PTZ00243 ABC transporter; Provisional

Probab=99.90  E-value=9.5e-24  Score=220.07  Aligned_cols=161  Identities=11%  Similarity=0.094  Sum_probs=124.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..  -.+|+|+||+|++||.|||+|++|||||||+++|.|++.   |++|+ .++|...        
T Consensus      1308 ~I~f~nVsf~Y~~~~--~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGL--PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCC--CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            499999999997632  226799999999999999999999999999999999998   99999 4776322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (255)
                      +...+. |+++.+...   -++.+|+.       ...+...+.+.++++..++.         .+..    ...||+|||
T Consensus      1383 R~~I~i-VpQdp~LF~---gTIreNId-------p~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243       1383 RRQFSM-IPQDPVLFD---GTVRQNVD-------PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred             HhcceE-ECCCCcccc---ccHHHHhC-------cccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence            233454 788876443   25545442       22234556677777766543         2222    247999999


Q ss_pred             chhhhhhhhccC-CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~-~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+ |+||||||||+.||....+.+.+.|.+
T Consensus      1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243       1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999985 899999999999999999999988865

>PLN03140 ABC transporter G family member; Provisional

Probab=99.90  E-value=8.9e-24  Score=218.36  Aligned_cols=173  Identities=13%  Similarity=0.057  Sum_probs=126.8

Q ss_pred             eEEEccceeeccccc---------cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC
Q 025256           77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~---------~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~  146 (255)
                      .+..+||++..+...         ....+|+|+|+.+++|++++|+|||||||||||++|+|+.. .-+.+|+ .++|..
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence            588899998874211         12237799999999999999999999999999999999863 1125788 466532


Q ss_pred             CC-----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC----cHHHHHHHHHhhcCCC--CCCC-----CCCC
Q 025256          147 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYA-----PSFD  210 (255)
Q Consensus       147 ~~-----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~----~~~~~~~~l~~l~l~~--~~~~-----~~lS  210 (255)
                      ..     ...|. +.+++...  ..+++.|++.+.... ..+...    ....+.++++.+++..  +..+     ..||
T Consensus       946 ~~~~~~~~~igy-v~Q~d~~~--~~lTV~E~L~~~a~l-r~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140        946 KKQETFARISGY-CEQNDIHS--PQVTVRESLIYSAFL-RLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred             CChHHhhhheEE-EccccccC--CCCcHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence            21     22354 66665433  337888887765432 222221    1234677888888752  3332     4799


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||||+.+|++|+.+|++|++||||++||......+.+++.+.
T Consensus      1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140       1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998753

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=1.4e-23  Score=218.95  Aligned_cols=161  Identities=16%  Similarity=0.070  Sum_probs=124.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|+....  .+|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .+||...        
T Consensus      1284 ~I~f~nVsf~Y~~~~~--~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLD--LVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCc--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            5899999999975322  26799999999999999999999999999999999998   99999 4776322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCCC----CCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~  214 (255)
                      +...+. +++|.+...   -+..+|+..       ..+...+.+.++++..++         +.+..+    ..||+|||
T Consensus      1359 R~~i~i-VpQdp~LF~---gTIr~NLdp-------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957      1359 RFKITI-IPQDPVLFS---GSLRMNLDP-------FSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred             HhcCeE-ECCCCcccC---ccHHHHcCc-------ccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence            233444 788876543   244444421       123455566666665543         223222    46999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+|||+||||+.+|.++.+.+.+.|++
T Consensus      1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957      1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.90  E-value=1.4e-24  Score=170.22  Aligned_cols=122  Identities=20%  Similarity=0.223  Sum_probs=83.3

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCC--------CCeeEEEecCCCCCcCccC
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKP--------PDVATVLPMDGFHLYLSQL  167 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~--------~~~g~~i~~d~~~~~~~~l  167 (255)
                      |+++||++++|++++|+|+||||||||+++|+|+..   |++|.+ +++....        ...+. +..+.....  .+
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~--~~   74 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGY-VPQDPQLFP--GL   74 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEE-EESSHCHHT--TS
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccc-ccccccccc--cc
Confidence            589999999999999999999999999999999996   566652 3321110        11111 222211100  01


Q ss_pred             CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC--CCC----CCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~----~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~  237 (255)
                      ++.++             ........+++.+.+..  ...    ...||+||+||+++|++++.+|+++|+||||+
T Consensus        75 tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   75 TVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             BHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            11111             12234566777766542  333    38999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.89  E-value=3.6e-23  Score=215.31  Aligned_cols=161  Identities=14%  Similarity=0.145  Sum_probs=124.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|+...+  .+|+|+||+|++|+.+||+|++|||||||+++|.|++    +.+|+ .++|...        
T Consensus      1217 ~I~f~nVs~~Y~~~~~--~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGR--AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCCc--ceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence            5899999999975222  2679999999999999999999999999999999998    67899 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCCC----CCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~  214 (255)
                      +...+ +|+++.+...   -++.+|+..       ......+.+.++++.+++.         .+..+    ..||+|||
T Consensus      1291 R~~is-~IpQdp~LF~---GTIR~NLdp-------~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271      1291 RKAFG-VIPQKVFIFS---GTFRKNLDP-------YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred             HhceE-EEeCCCccCc---cCHHHHhCc-------ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence            22344 4788876543   255554422       2234566677777776653         22222    36999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||||+.+|+||||||||+++|....+.+.+.|.+.
T Consensus      1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271      1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.89  E-value=6.8e-23  Score=174.49  Aligned_cols=156  Identities=13%  Similarity=0.068  Sum_probs=92.2

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHH-HHHHHhhcccC-----CCCccccCCCCCCCC-------eeEEEecCCCCC
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKASSFDSQVKPPD-------VATVLPMDGFHL  162 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLl-k~L~gll~~~~-----p~~G~~~~~~~~~~~-------~g~~i~~d~~~~  162 (255)
                      +|+++||+|++||+++|+||||||||||+ ..+...-+..+     |..+... +....++       ...+...++...
T Consensus        10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (226)
T cd03270          10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFL-GQMDKPDVDSIEGLSPAIAIDQKTTS   88 (226)
T ss_pred             ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhh-cccCccccccccCCCceEEecCCCCC
Confidence            78999999999999999999999999996 33321100000     0000000 0000010       111111222111


Q ss_pred             cCccCCcccChHHHHHhc-CCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCC
Q 025256          163 YLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNY  236 (255)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~  236 (255)
                      .....++.. .......+ .+..........+.++.+++.   .+.++..||+||+||+++|++++.+|  ++||+||||
T Consensus        89 ~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt  167 (226)
T cd03270          89 RNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPS  167 (226)
T ss_pred             CCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCc
Confidence            110011100 00000010 111111122335678888875   35678899999999999999999997  599999999


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++.+.++|.+
T Consensus       168 ~gLD~~~~~~l~~~l~~  184 (226)
T cd03270         168 IGLHPRDNDRLIETLKR  184 (226)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=4.7e-23  Score=213.06  Aligned_cols=155  Identities=15%  Similarity=0.151  Sum_probs=117.6

Q ss_pred             cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Ccc-ccCCCCC-----CCCeeEEEecCCCCCcC
Q 025256           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYL  164 (255)
Q Consensus        94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~  164 (255)
                      ..+|+|+|+.+++|++++|+||||||||||||+|+|++.   |+   +|+ .++|...     +...+. +.+++.+.. 
T Consensus       178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~~-  252 (1470)
T PLN03140        178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHVG-  252 (1470)
T ss_pred             ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCCC-
Confidence            337899999999999999999999999999999999997   77   898 4666322     223344 666654433 


Q ss_pred             ccCCcccChHHHHHhcCCCC------C-------------CcH---------------HHHHHHHHhhcCCC-------C
Q 025256          165 SQLDAMEDPKEAHARRGAPW------T-------------FNP---------------LLLLNCLKNLRNQG-------S  203 (255)
Q Consensus       165 ~~l~~~e~~~~~~~~~g~~~------~-------------~~~---------------~~~~~~l~~l~l~~-------~  203 (255)
                       .+++.|+..+.....+...      .             .+.               .....+++.+++..       +
T Consensus       253 -~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~  331 (1470)
T PLN03140        253 -VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGD  331 (1470)
T ss_pred             -cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCC
Confidence             4788888877554332110      0             000               11345777888752       3


Q ss_pred             CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+..+||||||||.+|++++.+|+++++||||+|||.....++.++|.+.
T Consensus       332 ~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l  382 (1470)
T PLN03140        332 EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI  382 (1470)
T ss_pred             ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999999988753

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=190.35  Aligned_cols=162  Identities=18%  Similarity=0.174  Sum_probs=117.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|+... .  +|+||||++.+|+.++|+||||+||||++|+|..+..   ..+|. .+|++..        
T Consensus       537 ~i~fsnvtF~Y~p~k-~--vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL  610 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPGK-P--VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL  610 (790)
T ss_pred             eEEEEEeEEecCCCC-c--eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence            589999999998642 2  6799999999999999999999999999999999997   78888 5777543        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH------HHHh-hcCC--CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN------CLKN-LRNQ--GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~------~l~~-l~l~--~~~----~~~~lS~G~~  214 (255)
                      +...|. +++|.....+   +...|+++     +-+.+-+ +.+.+      +-+. +.++  .+.    +.-+||||+|
T Consensus       611 Rs~IGV-VPQDtvLFNd---TI~yNIry-----ak~~Asn-eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK  680 (790)
T KOG0056|consen  611 RSSIGV-VPQDTVLFND---TILYNIRY-----AKPSASN-EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK  680 (790)
T ss_pred             HHhcCc-ccCcceeecc---eeeeheee-----cCCCCCh-HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence            334554 6666543332   33333332     2232222 22211      1121 1222  122    2337999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++||+++..|.++++||.|+.||....+.+...+...
T Consensus       681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl  720 (790)
T KOG0056|consen  681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL  720 (790)
T ss_pred             hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877653

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.89  E-value=2.9e-23  Score=188.84  Aligned_cols=163  Identities=17%  Similarity=0.116  Sum_probs=114.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CCCe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV  151 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~~~  151 (255)
                      .+.+++++..-.+.+  ..+++++||++.+|+.+||+||||||||||.|+|.|..+   |.+|. .+|+-..    +.+.
T Consensus       334 ~L~Ve~l~~~PPg~~--~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~l  408 (580)
T COG4618         334 ALSVERLTAAPPGQK--KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQL  408 (580)
T ss_pred             eeeEeeeeecCCCCC--CcceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHHh
Confidence            688999998766533  336699999999999999999999999999999999997   88888 5666221    1222


Q ss_pred             eEE---EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHH---------HHHHHhhcCCCCCCCC----CCCccccc
Q 025256          152 ATV---LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHGVGD  215 (255)
Q Consensus       152 g~~---i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~~~~~~~----~lS~G~~q  215 (255)
                      |..   +++|=....   =|+.+|+.    +++  ++.+.+.+         .+++-.+-.+.+..+.    .|||||||
T Consensus       409 G~hiGYLPQdVeLF~---GTIaeNIa----Rf~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQ  479 (580)
T COG4618         409 GRHIGYLPQDVELFD---GTIAENIA----RFG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQ  479 (580)
T ss_pred             ccccCcCcccceecC---CcHHHHHH----hcc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHH
Confidence            221   333222111   13333322    222  22233322         3444444445555443    79999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|||+-.+|.+++||||-+.||......+.+.|..
T Consensus       480 RIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~  517 (580)
T COG4618         480 RIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA  517 (580)
T ss_pred             HHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH
Confidence            99999999999999999999999999999988887754

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=5.1e-23  Score=212.85  Aligned_cols=156  Identities=13%  Similarity=0.046  Sum_probs=115.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCcc-ccCCCCC-------CCCeeEEEecCCCCCcCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~d~~~~~~~~  166 (255)
                      +|+|+|+.+++||+++|+||||||||||||+|+|++.. ..|++|+ .++|...       +...+. +.+++....  .
T Consensus        76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~~--~  152 (1394)
T TIGR00956        76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHFP--H  152 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccCC--C
Confidence            77999999999999999999999999999999998621 1268999 4665321       122344 566554333  3


Q ss_pred             CCcccChHHHHHhcCC---CCCCcH----HH-HHHHHHhhcCCC--C-----CCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          167 LDAMEDPKEAHARRGA---PWTFNP----LL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       167 l~~~e~~~~~~~~~g~---~~~~~~----~~-~~~~l~~l~l~~--~-----~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +++.|+..+......-   ......    .. ...+++.+++..  +     ..+..+||||||||.+|++|+.+|++++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            7888887765433210   011111    12 245678787753  2     2356899999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHhh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||.....++.++|.+.
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~l  255 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTS  255 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999998763

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.88  E-value=9.5e-23  Score=195.70  Aligned_cols=173  Identities=13%  Similarity=0.098  Sum_probs=130.6

Q ss_pred             EEEccceeeccccc-cccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256           78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~-~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~  150 (255)
                      +..++++....+.. ....+|++|+..+++||+.||+||+||||||||++|+|.....-..+|+ .++|...     +..
T Consensus        26 ~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~  105 (613)
T KOG0061|consen   26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKI  105 (613)
T ss_pred             eEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhhe
Confidence            55666666654431 1122679999999999999999999999999999999998522235777 4666322     333


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCC----CCcHHHHHHHHHhhcCC--CCCCC-----CCCCccccchhhh
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVED  219 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~-----~~lS~G~~qrv~~  219 (255)
                      .|. +.+|+..+..  +|+.|...+... ...+.    +...+.+.++++.+++.  .+..+     ..+|||||+||++
T Consensus       106 s~y-V~QdD~l~~~--LTV~EtL~f~A~-lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsi  181 (613)
T KOG0061|consen  106 SGY-VQQDDVLLPT--LTVRETLRFSAL-LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSI  181 (613)
T ss_pred             eEE-Eccccccccc--ccHHHHHHHHHH-hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHH
Confidence            555 7888875544  899887776543 33444    33445678888888886  33333     4699999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |..++.+|.|+++||||+|||.....++.+++.+.
T Consensus       182 a~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l  216 (613)
T KOG0061|consen  182 ALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL  216 (613)
T ss_pred             HHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999988753

>PLN03232 ABC transporter C family member; Provisional

Probab=99.88  E-value=1.2e-22  Score=211.77  Aligned_cols=155  Identities=17%  Similarity=0.147  Sum_probs=116.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .++++|+++.|+...+ ..+|+|+||+|++|+.++|+||+|||||||++.|.|++.   |++|.+..   .+...+. +.
T Consensus       614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v~  685 (1495)
T PLN03232        614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-VP  685 (1495)
T ss_pred             cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-Ec
Confidence            5899999999975211 126799999999999999999999999999999999997   88876321   1233444 67


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccchhhhhhhh
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDILV  223 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~~a~~l  223 (255)
                      ++.....   -++.+|+.+     |  ..++.+.+.++++...+.         .+..    ...||||||||+++|||+
T Consensus       686 Q~p~Lf~---gTIreNI~f-----g--~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl  755 (1495)
T PLN03232        686 QVSWIFN---ATVRENILF-----G--SDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV  755 (1495)
T ss_pred             Ccccccc---ccHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence            7665433   355554433     2  234566666666655442         2222    237999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      ..+|+|+||||||++||+...+++.+
T Consensus       756 y~~~~IlLLDEptSaLD~~t~~~I~~  781 (1495)
T PLN03232        756 YSNSDIYIFDDPLSALDAHVAHQVFD  781 (1495)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHH
Confidence            99999999999999999998877754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.88  E-value=2e-22  Score=210.60  Aligned_cols=154  Identities=20%  Similarity=0.193  Sum_probs=116.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ccccCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~~~~~~~~~~~~g~~i  155 (255)
                      .|+++|+++.|+...+ ..+|+|+||+|++|++++|+||+|||||||++.|.|++.   |++ |++.-    +...+. +
T Consensus       614 ~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay-v  684 (1622)
T PLN03130        614 AISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY-V  684 (1622)
T ss_pred             ceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-E
Confidence            5899999999975211 126799999999999999999999999999999999997   888 77421    223443 6


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccccchhhhhhh
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~~a~~  222 (255)
                      .++.....   -++.+|+.+     |  ..++.+.+.++++..++.         .+..    ...||||||||+++|||
T Consensus       685 ~Q~p~Lfn---gTIreNI~f-----g--~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARA  754 (1622)
T PLN03130        685 PQVSWIFN---ATVRDNILF-----G--SPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARA  754 (1622)
T ss_pred             cCccccCC---CCHHHHHhC-----C--CcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHH
Confidence            77665433   355554432     2  234566666776665542         2222    33799999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      +..+|+|+||||||++||+...+++.+
T Consensus       755 ly~~~~IlLLDEptSALD~~~~~~I~~  781 (1622)
T PLN03130        755 VYSNSDVYIFDDPLSALDAHVGRQVFD  781 (1622)
T ss_pred             HhCCCCEEEECCCccccCHHHHHHHHH
Confidence            999999999999999999988777653

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.88  E-value=1.4e-22  Score=211.36  Aligned_cols=155  Identities=14%  Similarity=0.121  Sum_probs=115.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i  155 (255)
                      .++++|+++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|++.   |++|++ +++     ..+. +
T Consensus       636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v  704 (1522)
T TIGR00957       636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V  704 (1522)
T ss_pred             cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence            69999999999752122  6799999999999999999999999999999999997   899983 443     2343 6


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc---------CCC----CCCCCCCCccccchhhhhhh
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~----~~~~~~lS~G~~qrv~~a~~  222 (255)
                      .++.....   .++.+|+.+     |  ..++.+...++++...         .+.    ..+...||||||||+++|||
T Consensus       705 ~Q~~~l~~---~Ti~eNI~~-----g--~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA  774 (1522)
T TIGR00957       705 PQQAWIQN---DSLRENILF-----G--KALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA  774 (1522)
T ss_pred             cCCccccC---CcHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence            66544221   355444432     2  1123333333333222         121    23456899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      +..+|+++|+||||++||+...+.+.+.+.
T Consensus       775 l~~~~~illLDEp~saLD~~~~~~i~~~l~  804 (1522)
T TIGR00957       775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVI  804 (1522)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence            999999999999999999999999988774

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.87  E-value=4.1e-22  Score=182.43  Aligned_cols=163  Identities=20%  Similarity=0.169  Sum_probs=120.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC-CCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD-SQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~-~~~~~~~~g~  153 (255)
                      -|.+.+.|+++.|.+..   .++++++|.|+.+..++++||||+|||||||++.|.++   |..|.+.. ....   .+.
T Consensus       387 ~pvi~~~nv~F~y~~~~---~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~---~~~  457 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP---MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNK---LPR  457 (614)
T ss_pred             CCeEEEeccccCCCCcc---hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---ccccccccccccc---chh
Confidence            47899999999998753   25699999999999999999999999999999999998   88887311 1110   010


Q ss_pred             EEecCCCCCcCccCCccc-ChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcE
Q 025256          154 VLPMDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                       +.+.-..    +++... ..++....  ++.....+.+..++.++++..   ...+.+||.|||.||.+|+.++.+|.+
T Consensus       458 -y~Qh~~e----~ldl~~s~le~~~~~--~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l  530 (614)
T KOG0927|consen  458 -YNQHLAE----QLDLDKSSLEFMMPK--FPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL  530 (614)
T ss_pred             -hhhhhHh----hcCcchhHHHHHHHh--ccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE
Confidence             1111000    011100 11121111  232455677889999999874   456779999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHHh
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||||++||.+....+.+.|.+
T Consensus       531 LlLDEPtnhLDi~tid~laeaiNe  554 (614)
T KOG0927|consen  531 LLLDEPTNHLDIETIDALAEAINE  554 (614)
T ss_pred             EEecCCCcCCCchhHHHHHHHHhc
Confidence            999999999999999999888865

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.86  E-value=7.5e-22  Score=205.55  Aligned_cols=136  Identities=11%  Similarity=0.154  Sum_probs=100.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      +|+|+||+|++|++++|+|||||||||||++|+|++.   |++|++ +++     ..+. +.++.....   .++.+|+.
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~  508 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII  508 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence            6799999999999999999999999999999999998   999983 443     2343 566554322   35555554


Q ss_pred             HHHHhcCCCCCCcHHHHHH---------HHHhhcCCCC----CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          175 EAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~---------~l~~l~l~~~----~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      +.     .+  ++.....+         .++.+..+..    .....||||||||+++|||+..+|+++|||||+++||+
T Consensus       509 ~g-----~~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       509 FG-----LS--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             hc-----cc--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            32     11  12122222         2222222221    23568999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025256          242 GVWKDVSSM  250 (255)
Q Consensus       242 ~~~~~l~~l  250 (255)
                      ...+.+.+.
T Consensus       582 ~~~~~i~~~  590 (1490)
T TIGR01271       582 VTEKEIFES  590 (1490)
T ss_pred             HHHHHHHHH
Confidence            999999874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.85  E-value=9.1e-22  Score=164.19  Aligned_cols=131  Identities=12%  Similarity=0.078  Sum_probs=91.3

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc----------ccCCCCC-----CCCeeEEEecCCCCC
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQVK-----PPDVATVLPMDGFHL  162 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~----------~~~~~~~-----~~~~g~~i~~d~~~~  162 (255)
                      +++++++++| +++|+||||||||||+++|+|++.   +..|.          ++.+...     ....+. +.++....
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence            7789999999 999999999999999999999985   44332          1222111     011122 22222110


Q ss_pred             cCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCC
Q 025256          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF  238 (255)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~  238 (255)
                                       ++..   ....+.++++. .-..+..+..||+||+||+++|++++    .+|+++|+|||+++
T Consensus        89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~  147 (197)
T cd03278          89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA  147 (197)
T ss_pred             -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence                             1110   12344455555 22245667899999999999999986    46799999999999


Q ss_pred             CChHHHHHHHHHHHhh
Q 025256          239 LDGGVWKDVSSMFDEK  254 (255)
Q Consensus       239 LD~~~~~~l~~ll~~~  254 (255)
                      ||+.....+.+++.+.
T Consensus       148 LD~~~~~~l~~~l~~~  163 (197)
T cd03278         148 LDDANVERFARLLKEF  163 (197)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PTZ00243 ABC transporter; Provisional

Probab=99.84  E-value=4.2e-21  Score=200.37  Aligned_cols=136  Identities=16%  Similarity=0.098  Sum_probs=99.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +|+|+||+|++|++++|+||||||||||+++|+|++.   |++|++.-    ....+. +.++... ..  .++.+|+.+
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l-~~--~Tv~enI~~  743 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWI-MN--ATVRGNILF  743 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCcc-CC--CcHHHHHHc
Confidence            6799999999999999999999999999999999997   99998422    123444 5665442 21  355555433


Q ss_pred             HHHhcCCCCCCcHHHH---------HHHHHhh--cCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256          176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~  242 (255)
                      .       ...+...+         .+.++.+  ++.  .......||||||||+++|||++.+|+++|+|||+++||+.
T Consensus       744 ~-------~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        744 F-------DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             C-------ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            1       11111122         2233333  221  23456789999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 025256          243 VWKDVSS  249 (255)
Q Consensus       243 ~~~~l~~  249 (255)
                      ..+.+.+
T Consensus       817 ~~~~i~~  823 (1560)
T PTZ00243        817 VGERVVE  823 (1560)
T ss_pred             HHHHHHH
Confidence            8877765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.84  E-value=1.7e-20  Score=176.31  Aligned_cols=157  Identities=18%  Similarity=0.135  Sum_probs=118.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-CccccCCCCCCCCee-E
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVA-T  153 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-~G~~~~~~~~~~~~g-~  153 (255)
                      ..|+++|++..-++..  + .+++.+|++++|+-+.|.||||||||||+|.|+|+-    |. +|++..    +.+.. -
T Consensus       391 ~~i~~~nl~l~~p~~~--~-ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~----P~~~~~l  459 (604)
T COG4178         391 HGITLENLSLRTPDGQ--T-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRISM----PADSALL  459 (604)
T ss_pred             ceeEEeeeeEECCCCC--e-eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCceec----CCCCceE
Confidence            5799999999998753  2 569999999999999999999999999999999996    54 333110    11111 1


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCC---CCcHHHHHHHHHhhcCC--------CCCCCCCCCccccchhhhhhh
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~---~~~~~~~~~~l~~l~l~--------~~~~~~~lS~G~~qrv~~a~~  222 (255)
                      .+++-.|      ++   ... .+....+|.   .+..+.+.++|..++++        ....-..||+|||||+++||.
T Consensus       460 flpQ~PY------~p---~Gt-Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi  529 (604)
T COG4178         460 FLPQRPY------LP---QGT-LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL  529 (604)
T ss_pred             EecCCCC------CC---Ccc-HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence            1233332      12   221 222333332   35677888999999886        223445899999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++|+++++||-|++||+.....+.+++++
T Consensus       530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         530 LLHKPKWVFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             HHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence            9999999999999999999999999999876

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=1.9e-20  Score=166.24  Aligned_cols=156  Identities=19%  Similarity=0.199  Sum_probs=114.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ..+|++|+.+.|.+..   +-+..||++|++||+|-|+|.||||||||++.|.|+.+   |++|+              |
T Consensus       321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~--------------I  380 (546)
T COG4615         321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGE--------------I  380 (546)
T ss_pred             cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCc--------------e
Confidence            4689999999998742   34689999999999999999999999999999999996   77665              4


Q ss_pred             ecCCCCCcCccCCc--------ccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------CCCCCCCCccccchhhhh
Q 025256          156 PMDGFHLYLSQLDA--------MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       156 ~~d~~~~~~~~l~~--------~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~~a  220 (255)
                      .+||..+...+++.        ..+...+....|-........+..+++++.+..       +...-+||.|||+|+++.
T Consensus       381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll  460 (546)
T COG4615         381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL  460 (546)
T ss_pred             eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence            44444333211110        000011111122222245566777888877652       333448999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      .|++.+.+|+++||+-+-.||..++.+...+
T Consensus       461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~l  491 (546)
T COG4615         461 LALLEERDILVLDEWAADQDPAFRREFYQVL  491 (546)
T ss_pred             HHHHhhCCeEEeehhhccCChHHHHHHHHHH
Confidence            9999999999999999999999998887654

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=8.7e-21  Score=162.84  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=46.3

Q ss_pred             CCCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       203 ~~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..+..||+||+||+++|++++    .+|+++|+|||+++||+..++.+++.+.+.
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~  208 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL  208 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            4566789999999999999996    368999999999999999999999988763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=3.2e-20  Score=165.85  Aligned_cols=162  Identities=17%  Similarity=0.140  Sum_probs=109.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .+.+.+|++.|+... .  +|+++||++..|+.++++||+|+||||++++|...+.   +++|. .++++..        
T Consensus       262 ~v~F~~V~F~y~~~r-~--iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         262 AVAFINVSFAYDPRR-P--ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eEEEEEEEeeccccc-h--hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence            477899999998742 2  6699999999999999999999999999999999996   66766 2444321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCCCC----CCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~  214 (255)
                      +.-.|. +++|-....        +..+....+|-+..- .+......+...+         +.+..+    -.+|||||
T Consensus       336 R~aIg~-VPQDtvLFN--------Dti~yni~ygr~~at-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek  405 (497)
T COG5265         336 RRAIGI-VPQDTVLFN--------DTIAYNIKYGRPDAT-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK  405 (497)
T ss_pred             HHHhCc-Ccccceehh--------hhHHHHHhccCcccc-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence            111222 333322111        011111122222222 2222222222222         222222    27899999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++||+++.+|+|+++||.|+.||....+++..-+++.
T Consensus       406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~  445 (497)
T COG5265         406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREV  445 (497)
T ss_pred             HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998887753

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.3e-20  Score=170.10  Aligned_cols=157  Identities=12%  Similarity=0.007  Sum_probs=104.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -|.+.+++..||++.    .|.+-++++..|..+||+|+||+|||||||+|+.---..+|..         ..-.|..+.
T Consensus        80 Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~ve---------qE~~g~~t~  146 (582)
T KOG0062|consen   80 DIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVE---------QEVRGDDTE  146 (582)
T ss_pred             ceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCch---------hheeccchH
Confidence            477889999999855    6799999999999999999999999999999987110001110         000111111


Q ss_pred             --cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHH-HHHhhcCCC---CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          157 --MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       157 --~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~-~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                        +++..      .-.+...+......+........+.. +|.-+++..   ......||||.|.|+++||||..+||+|
T Consensus       147 ~~~~~l~------~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL  220 (582)
T KOG0062|consen  147 ALQSVLE------SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL  220 (582)
T ss_pred             HHhhhhh------ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE
Confidence              11110      00011122222211111112333333 777777763   4567799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHH
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~  252 (255)
                      +|||||+.||..+..-+-+.|.
T Consensus       221 LLDEPTNhLDv~av~WLe~yL~  242 (582)
T KOG0062|consen  221 LLDEPTNHLDVVAVAWLENYLQ  242 (582)
T ss_pred             eecCCcccchhHHHHHHHHHHh
Confidence            9999999999988777776664

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=1.1e-20  Score=159.33  Aligned_cols=157  Identities=12%  Similarity=0.112  Sum_probs=92.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -++++|+. .|++..    +++++++     ++++|+||||||||||+++|.-.+..  +...  ..    ....+.++ 
T Consensus         5 ~l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~--~~~~--~~----~~~i~~~~-   65 (212)
T cd03274           5 KLVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGF--RASK--MR----QKKLSDLI-   65 (212)
T ss_pred             EEEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhcc--CHHH--hh----hhhHHHHh-
Confidence            36777876 777644    6688887     79999999999999999999855420  0000  00    00111111 


Q ss_pred             cCCCCCcCccCCcccChHH--------HHHhcCCCCCCcHH--HHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~--~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      ..+..  .+.++..+....        .....++.......  ...++++.+++.  .+.++..||+||+||+++|++++
T Consensus        66 ~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~  143 (212)
T cd03274          66 HNSAG--HPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA  143 (212)
T ss_pred             cCCCC--CCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence            11100  000111111110        00112221111000  012223333333  34556789999999999999996


Q ss_pred             c----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~----~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .    +|+++|+|||+++||+..+..+.+++.+.
T Consensus       144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~  177 (212)
T cd03274         144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER  177 (212)
T ss_pred             hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence            3    57999999999999999999999998763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.80  E-value=1.9e-19  Score=155.58  Aligned_cols=145  Identities=9%  Similarity=0.056  Sum_probs=93.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-c-ccCCC--------C--CCCCeeEEEecCCCC-------CcCccC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL  167 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~~~~~--------~--~~~~~g~~i~~d~~~-------~~~~~l  167 (255)
                      ..+++|+||||||||||+++|++++.   +..| + ...+.        .  .......++.++...       -..+.+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l  101 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI  101 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence            56999999999999999999999996   5433 3 22211        0  011122223333210       001123


Q ss_pred             CcccChHHHHHhcC-C-CCCCcHHHHHHHHHhhcCCC----------------------CCCCCCCCccccchhhhhhhh
Q 025256          168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       168 ~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~~----------------------~~~~~~lS~G~~qrv~~a~~l  223 (255)
                      ++.++......... + ........+.+.++.+++..                      +.++..||+||+||+++|+++
T Consensus       102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  181 (251)
T cd03273         102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL  181 (251)
T ss_pred             EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence            33333221111101 1 11223456777888887752                      246779999999999999999


Q ss_pred             c----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +    .+|+++|+|||+++||+..++.+.+++.+.
T Consensus       182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~  216 (251)
T cd03273         182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH  216 (251)
T ss_pred             HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            7    578999999999999999999999998763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.80  E-value=3.5e-19  Score=154.25  Aligned_cols=65  Identities=12%  Similarity=-0.003  Sum_probs=55.8

Q ss_pred             HHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++++.++++   ....+..||+||+||+++|++|+.+   |+++|+||||++||+..++.+.++|.+.
T Consensus       148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l  218 (261)
T cd03271         148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL  218 (261)
T ss_pred             HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            345667777775   3567789999999999999999986   7999999999999999999999998753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.80  E-value=2.1e-19  Score=181.72  Aligned_cols=162  Identities=15%  Similarity=0.134  Sum_probs=122.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++|++.+|.....  ++|+|+||+|++||.|||+|..|||||||+..|.++..   |.+|+ .+||-..        
T Consensus      1138 ~I~f~~~~~RYrp~lp--~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLP--LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             eEEEEEeEEEeCCCCc--chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence            5899999999977432  36799999999999999999999999999999999997   88888 5676321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (255)
                      +...+. |++|......   |++.|++.       ..++..+.+-+.+|...+.         .+..    ...||-|||
T Consensus      1213 RsrlsI-IPQdPvLFsG---TvR~NLDP-------f~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1213 RSRLSI-IPQDPVLFSG---TVRFNLDP-------FDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred             HhcCee-eCCCCceecC---ccccccCc-------ccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence            233343 7777654331   33333322       2334555566666665542         2222    237999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |.+++||||+.+.+||++||.|+..|++.-..|.+.|.+.
T Consensus      1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred             HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888887777653

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.80  E-value=3e-19  Score=161.01  Aligned_cols=157  Identities=14%  Similarity=0.117  Sum_probs=108.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .+++-.++.|.|++..     |.--.=+|..||++|++||||-|||||.++|+|.++   |++|...+        - -+
T Consensus       341 ~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~~~~--------~-~v  403 (591)
T COG1245         341 TLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGSEED--------L-KV  403 (591)
T ss_pred             eeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCCCcc--------c-eE
Confidence            3567778888888753     233334677899999999999999999999999998   99985111        1 13


Q ss_pred             ecCCCCCcC-ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256          156 PMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       156 ~~d~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      ++-.+++.. .+.++.+..   ...... ...+.....++.+-|.+.  .+..+..||||+-|||++|.+|..++|++++
T Consensus       404 SyKPQyI~~~~~gtV~~~l---~~~~~~-~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll  479 (591)
T COG1245         404 SYKPQYISPDYDGTVEDLL---RSAIRS-AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL  479 (591)
T ss_pred             eecceeecCCCCCcHHHHH---HHhhhh-hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence            333333321 112322211   111110 011222334556656655  4678889999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHHh
Q 025256          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 DEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||.+.||.+.+-.+...|..
T Consensus       480 DEPSA~LDvEqR~~vakvIRR  500 (591)
T COG1245         480 DEPSAYLDVEQRIIVAKVIRR  500 (591)
T ss_pred             cCchhhccHHHHHHHHHHHHH
Confidence            999999999998888777654

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.80  E-value=6.1e-20  Score=168.26  Aligned_cols=158  Identities=13%  Similarity=0.048  Sum_probs=102.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .-+.++++++.|.+..    .++|+.|++.+|+.+||+|+|||||||+|++|+|...   |..          +.... +
T Consensus        74 ~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p----------~~~d~-y  135 (614)
T KOG0927|consen   74 RDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIP----------EHIDF-Y  135 (614)
T ss_pred             ccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCC----------cccch-h
Confidence            3589999999998855    7799999999999999999999999999999999885   422          12221 1


Q ss_pred             ecCCCCCcCccCCcc-----------cChHHHHHhcCCC-CCCcHHHH-------------------HHHHHhhcCC---
Q 025256          156 PMDGFHLYLSQLDAM-----------EDPKEAHARRGAP-WTFNPLLL-------------------LNCLKNLRNQ---  201 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~-----------e~~~~~~~~~g~~-~~~~~~~~-------------------~~~l~~l~l~---  201 (255)
                      .++-...+. ..+..           ...++...+.... ++.+.+..                   ..++-.+++.   
T Consensus       136 ~ls~e~~ps-~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m  214 (614)
T KOG0927|consen  136 LLSREIEPS-EKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM  214 (614)
T ss_pred             hhcccCCCc-hHHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence            111111000 00000           0001111111110 11111111                   1222222222   


Q ss_pred             CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       202 ~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      .......||||+++|+++|++|..+|++|+|||||++||..+..-+-+.|.
T Consensus       215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~  265 (614)
T KOG0927|consen  215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA  265 (614)
T ss_pred             HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence            345677999999999999999999999999999999999988877777664

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=6.8e-19  Score=158.20  Aligned_cols=162  Identities=18%  Similarity=0.177  Sum_probs=120.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      .|++-+.+|++.|.+.. .  .+..++|-|.--..|+|+||||.||||||++|.|-+.   |..|+.....  +-.+|. 
T Consensus       584 PPvLGlH~VtFgy~gqk-p--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--rL~iG~-  654 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQK-P--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--RLRIGW-  654 (807)
T ss_pred             CCeeecccccccCCCCC-c--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--eeeeec-
Confidence            47889999999996632 2  4599999999999999999999999999999999997   8888722111  122232 


Q ss_pred             EecCCCCCcCccCCcccCh-HHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                        +| .+ ....++..+.+ ++..+.+.+|    .......|..+++.   ..+++..|||||+.||++|-.-+..|+||
T Consensus       655 --Fd-Qh-~~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl  726 (807)
T KOG0066|consen  655 --FD-QH-ANEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL  726 (807)
T ss_pred             --hh-hh-hHHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence              11 11 11223433333 3444444443    34556777777775   34678899999999999998888999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||+.||.++...+.+.|.+
T Consensus       727 ILDEPTNNLDIESIDALaEAIne  749 (807)
T KOG0066|consen  727 ILDEPTNNLDIESIDALAEAINE  749 (807)
T ss_pred             EecCCCCCcchhhHHHHHHHHHh
Confidence            99999999999999988888764

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.77  E-value=6.1e-19  Score=148.80  Aligned_cols=152  Identities=14%  Similarity=0.111  Sum_probs=92.2

Q ss_pred             eEEEccceeeccccccccccccccceecC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-cc-------CCCCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-------DSQVK  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~-~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~-------~~~~~  147 (255)
                      .|+++|+. .|.+.       .+++|... +|++++|+||||||||||++.|++.+..  +..+. ..       .....
T Consensus         5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~   74 (213)
T cd03279           5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED   74 (213)
T ss_pred             EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence            47888988 66442       55566544 5899999999999999999999965421  22222 11       00000


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH--HHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC--LKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~--l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                      ....+. +..+....+    .+..       ..++    +...+...  +....+.  .+..+..||+||+||+++|+++
T Consensus        75 ~~~v~~-~f~~~~~~~----~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al  138 (213)
T cd03279          75 TAEVSF-TFQLGGKKY----RVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL  138 (213)
T ss_pred             cEEEEE-EEEECCeEE----EEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence            111222 222211110    1111       0111    11222111  1111111  2566779999999999999999


Q ss_pred             cc----------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~----------~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.          +|+++|+|||+++||+..++.+.+++.+.
T Consensus       139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~  179 (213)
T cd03279         139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI  179 (213)
T ss_pred             HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            74          57899999999999999999999888653

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1e-18  Score=176.77  Aligned_cols=156  Identities=14%  Similarity=0.132  Sum_probs=117.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      ...++++|.++..+.. .....|+||||+|++|+.+||+||-|||||+||..|.|.++   ..+|+ .++|.     .+ 
T Consensus       516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----ia-  585 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VA-  585 (1381)
T ss_pred             CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EE-
Confidence            3569999999998763 23336799999999999999999999999999999999997   67776 23332     22 


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC---------C----CCCCCCccccchhhhh
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---------V----YAPSFDHGVGDPVEDD  220 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~---------~----~~~~lS~G~~qrv~~a  220 (255)
                      ++++..-...   -++.+|       +-+...++.+.+.++++...+..+         .    +.-.||||||||+++|
T Consensus       586 Yv~Q~pWI~n---gTvreN-------ILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA  655 (1381)
T KOG0054|consen  586 YVPQQPWIQN---GTVREN-------ILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA  655 (1381)
T ss_pred             EeccccHhhC---CcHHHh-------hhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence            2444332211   233333       333455788888888887766432         2    2238999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHH
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~l  250 (255)
                      ||+-.++||++||-|++++|.+.-+.+.+-
T Consensus       656 RAVY~~adIYLLDDplSAVDahvg~~if~~  685 (1381)
T KOG0054|consen  656 RAVYQDADIYLLDDPLSAVDAHVGKHIFEE  685 (1381)
T ss_pred             HHHhccCCEEEEcCcchhhhHhhhHHHHHH
Confidence            999999999999999999999887777653

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.76  E-value=2.1e-18  Score=142.13  Aligned_cols=172  Identities=16%  Similarity=0.268  Sum_probs=121.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc--ccCC-CC---C-
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDS-QV---K-  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~--~~~~-~~---~-  147 (255)
                      |+++.++|++..+...+..+.+++++|+++++||+-||+|.+|||||-.+|.|+|..+..|--...  .|+. +.   . 
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            678899999999987666777899999999999999999999999999999999999866644433  2222 10   0 


Q ss_pred             ---CCCee---EEEecCCCCCcCccCCcccChHHHH-Hhc-CCC-C----------CCcHHHHHHHHHhhcCCC-----C
Q 025256          148 ---PPDVA---TVLPMDGFHLYLSQLDAMEDPKEAH-ARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----S  203 (255)
Q Consensus       148 ---~~~~g---~~i~~d~~~~~~~~l~~~e~~~~~~-~~~-g~~-~----------~~~~~~~~~~l~~l~l~~-----~  203 (255)
                         +.-.|   .+|+++..       +-.+..+... ..+ .+| +          .+......+++..+++..     .
T Consensus        81 r~RRk~ig~~isMIFQeP~-------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~  153 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQ-------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR  153 (330)
T ss_pred             HHhhhhhccchhhhhcCch-------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence               01111   12333332       1112111111 111 111 1          112344567777887763     3


Q ss_pred             CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      -++.++.-|+.|+|.+|.|++.+|++||.||||+.+|+..+.++..++..
T Consensus       154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~  203 (330)
T COG4170         154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR  203 (330)
T ss_pred             hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999988754

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.75  E-value=2.5e-18  Score=144.25  Aligned_cols=131  Identities=14%  Similarity=0.063  Sum_probs=81.5

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHH----HhhcccCCCCccc------cCCCCCCCCeeEEEecCC-CCCc--CccC
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASS------FDSQVKPPDVATVLPMDG-FHLY--LSQL  167 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~----gll~~~~p~~G~~------~~~~~~~~~~g~~i~~d~-~~~~--~~~l  167 (255)
                      ++++.+| +++|+||||||||||+++|.    |...   |++|..      +.........+. +..+. ...+  ...+
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~-~f~~~~~~~~~v~r~~   91 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKL-AFENANGKKYTITRSL   91 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEE-EEEeCCCCEEEEEEEh
Confidence            3456667 99999999999999999996    5543   655531      111111122222 22221 1000  0001


Q ss_pred             CcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccch------hhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr------v~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      ++.++..+      .+    .....+.+       +..+..||+||+||      ++++++++.+|+++|+|||+++||+
T Consensus        92 ~~~~~~~~------~~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~  154 (204)
T cd03240          92 AILENVIF------CH----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE  154 (204)
T ss_pred             hHhhceee------ec----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence            22221111      01    11111111       55677999999996      6888999999999999999999999


Q ss_pred             HHHH-HHHHHHHh
Q 025256          242 GVWK-DVSSMFDE  253 (255)
Q Consensus       242 ~~~~-~l~~ll~~  253 (255)
                      ..++ .+.+++.+
T Consensus       155 ~~~~~~l~~~l~~  167 (204)
T cd03240         155 ENIEESLAEIIEE  167 (204)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999 99998865

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.75  E-value=1.6e-17  Score=138.68  Aligned_cols=137  Identities=11%  Similarity=0.108  Sum_probs=86.5

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Ccc----ccCCCCCCCCeeEEEecCCCCCcCccCCcc
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS----SFDSQVKPPDVATVLPMDGFHLYLSQLDAM  170 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~--~G~----~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~  170 (255)
                      ++++++++.+| +.+|+||||||||||+..|...+....+.  .|.    .+..........  +.++....+       
T Consensus        12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~--~~~~~~~~~-------   81 (198)
T cd03276          12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKIT--VTLKNQGLD-------   81 (198)
T ss_pred             eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEE--EEEEcCCcc-------
Confidence            36677778776 88999999999999999998765311000  111    000000001111  111111100       


Q ss_pred             cChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHH
Q 025256          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKD  246 (255)
Q Consensus       171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~  246 (255)
                      ++         .........+.++++. .-....++..||+||+||+++|+++    +.+|+++|+|||+++||...+..
T Consensus        82 ~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~  151 (198)
T cd03276          82 AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI  151 (198)
T ss_pred             CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence            00         0000112334455555 3334667789999999999999999    58999999999999999999999


Q ss_pred             HHHHHHh
Q 025256          247 VSSMFDE  253 (255)
Q Consensus       247 l~~ll~~  253 (255)
                      +.++|.+
T Consensus       152 ~~~~l~~  158 (198)
T cd03276         152 STDLLVK  158 (198)
T ss_pred             HHHHHHH
Confidence            9998865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.74  E-value=1.6e-18  Score=139.03  Aligned_cols=160  Identities=19%  Similarity=0.143  Sum_probs=101.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCee--
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA--  152 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g--  152 (255)
                      .+++++||...-        -|-.+|.++..||++-++||||||||||+-.++|++    |-+|+ .++|.......+  
T Consensus         2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~e   69 (248)
T COG4138           2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATE   69 (248)
T ss_pred             ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhH
Confidence            356777776542        346778899999999999999999999999999998    77776 344432111000  


Q ss_pred             -----EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC--CCCCCCCccccchhhhhhhhc-
Q 025256          153 -----TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVGDPVEDDILVG-  224 (255)
Q Consensus       153 -----~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~qrv~~a~~l~-  224 (255)
                           .++.++....+  .++++...     -...|.......+..+...++++.+  ..+..||||+-|||-+|...+ 
T Consensus        70 LArhRAYLsQqq~p~f--~mpV~~YL-----~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ  142 (248)
T COG4138          70 LARHRAYLSQQQTPPF--AMPVWHYL-----TLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (248)
T ss_pred             HHHHHHHHhhccCCcc--hhhhhhhh-----hhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence                 00111111100  01111100     0111222223344566666666643  456799999999998776542 


Q ss_pred             ------cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          225 ------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ------~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                            ...+++|+|||.++||...+..+..++.+.
T Consensus       143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~  178 (248)
T COG4138         143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL  178 (248)
T ss_pred             ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence                  234789999999999999988888887653

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.74  E-value=1.4e-17  Score=136.70  Aligned_cols=171  Identities=15%  Similarity=0.022  Sum_probs=119.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCC-CC----C
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQV-KP----P  149 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~-~~----~  149 (255)
                      ..|++.++.+.|.... +  ++-|+|++++.|....++|.||||||||||+|+|---   .-.|.+ ..+.. ..    .
T Consensus        12 ~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~   85 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE   85 (291)
T ss_pred             ceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence            3699999999997643 3  5599999999999999999999999999999999542   222321 22211 00    1


Q ss_pred             CeeEEEecCCCCCcC----ccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhcc
Q 025256          150 DVATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~----~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ..|....+.+.-...    .+.+..-+.......+++.. .+.++-..+++.+.+....+....|-|||+||.++..|+.
T Consensus        86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~  164 (291)
T KOG2355|consen   86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK  164 (291)
T ss_pred             ccCceeEecccccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence            122222222211000    00111112222233444422 2336667788888888889999999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +-++|+|||.|--||...+..+.++|.+
T Consensus       165 PfkVLLLDEVTVDLDVlARadLLeFlke  192 (291)
T KOG2355|consen  165 PFKVLLLDEVTVDLDVLARADLLEFLKE  192 (291)
T ss_pred             ceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence            9999999999999999999999999875

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.73  E-value=1.5e-17  Score=153.75  Aligned_cols=167  Identities=15%  Similarity=0.055  Sum_probs=115.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccc---cCCCCCCCCe
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASS---FDSQVKPPDV  151 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~~---~~~~~~~~~~  151 (255)
                      .+|++++|+..-++.  ..++++++||+|.+|+-+.|.||||||||+|+|+|+|+-    | .+|.+   .++.   +..
T Consensus       432 n~i~~e~v~l~tPt~--g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~---~~~  502 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTN--GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGG---PKD  502 (659)
T ss_pred             ceEEeeeeeecCCCC--CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCC---CCc
Confidence            689999999998774  223569999999999999999999999999999999996    6 56662   2221   111


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCC--------CC-----CCCCCCCccccchh
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--------GS-----VYAPSFDHGVGDPV  217 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--------~~-----~~~~~lS~G~~qrv  217 (255)
                      ...+++-.|...   =+..+..-+... ........+.+.+...|+++.++        .+     -....||+||+||+
T Consensus       503 lfflPQrPYmt~---GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL  579 (659)
T KOG0060|consen  503 LFFLPQRPYMTL---GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL  579 (659)
T ss_pred             eEEecCCCCccc---cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence            112333332110   011111111100 00111234556777888887764        12     23458999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||.+.++|++-||||-|+++|++...++...+++.
T Consensus       580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~  616 (659)
T KOG0060|consen  580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM  616 (659)
T ss_pred             HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999998888753

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.73  E-value=6.8e-18  Score=168.10  Aligned_cols=155  Identities=13%  Similarity=0.045  Sum_probs=117.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCCeeEEEecCCCCCcCccCCc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQLDA  169 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~d~~~~~~~~l~~  169 (255)
                      +|+||+=-+++|.++||+|+|||||||||++|+|.... --.+|+ .++|...     ....|. +.+++.++.  .+|+
T Consensus       806 LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~-G~I~Gdi~i~G~p~~q~tF~R~~GY-vqQ~DiH~~--~~TV  881 (1391)
T KOG0065|consen  806 LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG-GYIEGDILISGFPKDQETFARVSGY-VEQQDIHSP--ELTV  881 (1391)
T ss_pred             hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCccc-ceEEeEEEECCeeCchhhhccccce-eecccccCc--ccch
Confidence            67999999999999999999999999999999998520 012445 3555322     234565 788877664  4899


Q ss_pred             ccChHHHHHhcC---CCCCCcHHHHHHHHHhhcCC--CCCCCC----CCCccccchhhhhhhhccCC-cEEEEeCCCCCC
Q 025256          170 MEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDILVGLQH-KVVIVDGNYLFL  239 (255)
Q Consensus       170 ~e~~~~~~~~~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~----~lS~G~~qrv~~a~~l~~~~-~ililDEp~~~L  239 (255)
                      .|-+.+....+-   ++.+...+.+.++++.|++.  .+.-+.    -||.+||+|+.||..|+.+| -||+|||||+||
T Consensus       882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL  961 (1391)
T KOG0065|consen  882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL  961 (1391)
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence            888877655442   22222335578899999887  333333    49999999999999999999 999999999999


Q ss_pred             ChHHHHHHHHHHHhh
Q 025256          240 DGGVWKDVSSMFDEK  254 (255)
Q Consensus       240 D~~~~~~l~~ll~~~  254 (255)
                      |..+...+..+++..
T Consensus       962 DsqaA~~i~~~lrkl  976 (1391)
T KOG0065|consen  962 DSQAAAIVMRFLRKL  976 (1391)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999888888887654

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.72  E-value=1.1e-17  Score=144.31  Aligned_cols=158  Identities=13%  Similarity=0.064  Sum_probs=92.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC--------CCCC-
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD--------SQVK-  147 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~--------~~~~-  147 (255)
                      ++++|. +.|.+..         ++...++ +++|+||||||||||+.+|++++.   +..|.. ..        +... 
T Consensus         4 i~l~nf-~~~~~~~---------~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~---~~~~~~r~~~~~~~i~~~~~~~   69 (247)
T cd03275           4 LELENF-KSYKGRH---------VIGPFDR-FTCIIGPNGSGKSNLMDAISFVLG---EKSSHLRSKNLKDLIYRARVGK   69 (247)
T ss_pred             EEEECc-cccCCCe---------eecCCCC-eEEEECCCCCCHHHHHHHHHHHhC---CCcccccccchhhhcccCcccc
Confidence            667776 6665321         1222334 999999999999999999999995   555542 11        1100 


Q ss_pred             -CCCeeE-EEecCC---CCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCC-------------------
Q 025256          148 -PPDVAT-VLPMDG---FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG-------------------  202 (255)
Q Consensus       148 -~~~~g~-~i~~d~---~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~-------------------  202 (255)
                       .+.... .+.+..   .+.... ....+..    ..+.+ ........+.++++.+++..                   
T Consensus        70 ~~~~~~~v~~~f~~~~~~~~~~~-~~~~~~~----~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~  144 (247)
T cd03275          70 PDSNSAYVTAVYEDDDGEEKTFR-RIITGGS----SSYRINGKVVSLKEYNEELEKINILVKARNFLVFQGDVESIASKN  144 (247)
T ss_pred             CCCceEEEEEEEEcCCCcEEEEE-EEEECCc----eEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhcc
Confidence             000111 011111   100000 0000000    00011 11123344456666666531                   


Q ss_pred             -----CCCCCCCCccccchhhhhhhhccC----CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          203 -----SVYAPSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       203 -----~~~~~~lS~G~~qrv~~a~~l~~~----~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                           ...+..||+||+||+++|++++.+    |+++|+|||+++||+..+..+.++|.+.
T Consensus       145 p~~~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~  205 (247)
T cd03275         145 PPGKRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ  205 (247)
T ss_pred             CcchhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh
Confidence                 122368999999999999999764    8999999999999999999999988764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.68  E-value=3e-16  Score=156.18  Aligned_cols=65  Identities=12%  Similarity=0.003  Sum_probs=57.0

Q ss_pred             HHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...+.++.++++   ....+..||+||+||+.+|++|+.+|   +++|+|||+++||+..++.+.++|++.
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l  879 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL  879 (943)
T ss_pred             HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            345677788876   35678899999999999999999998   999999999999999999999998763

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.68  E-value=8.4e-17  Score=133.86  Aligned_cols=146  Identities=48%  Similarity=0.864  Sum_probs=126.9

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~  183 (255)
                      -+.-+++|++|+.|+||||++..+...    ||..-..|+.+..+  ...++++|||++++..++.+++++..+.++|.|
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap  189 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP  189 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence            345789999999999999998877764    57664444433322  456689999999999999999999999999999


Q ss_pred             CCCcHHHHHHHHHhhc--CCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256          184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~~  255 (255)
                      ++|+...++++++.+.  -..+.++|.|+++.+..+.--..+....+|+|+||.+..||.++|+.+.++++++|
T Consensus       190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~  263 (323)
T KOG2702|consen  190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY  263 (323)
T ss_pred             cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence            9999999999999888  45789999999999999998888888999999999999999999999999999876

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.66  E-value=3.4e-16  Score=144.79  Aligned_cols=166  Identities=21%  Similarity=0.232  Sum_probs=116.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCC---
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD---  150 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~---  150 (255)
                      .+.+++++++..-        .++|+||++++|||+||.|-=|||+|-|++.|.|..+   +++|+ .++|+.....   
T Consensus       261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~  329 (500)
T COG1129         261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR  329 (500)
T ss_pred             CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence            4578888886442        3489999999999999999999999999999999876   78888 5666432211   


Q ss_pred             ----eeE-EEecC----CCCCcCccCCcccChHHH-HHh-c--CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCccc
Q 025256          151 ----VAT-VLPMD----GFHLYLSQLDAMEDPKEA-HAR-R--GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       151 ----~g~-~i~~d----~~~~~~~~l~~~e~~~~~-~~~-~--g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (255)
                          .|. +++-|    |..+   .+++.+|.... ... .  ++ .............+.+.+.   .+..+..||||.
T Consensus       330 ~Ai~~Gi~~v~EDRk~~Gl~l---~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGN  406 (500)
T COG1129         330 DAIKAGIAYVPEDRKSEGLVL---DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGN  406 (500)
T ss_pred             HHHHcCCEeCCcccccCcCcC---CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchh
Confidence                121 12211    1111   13444444333 111 1  11 1111222345556666654   456777999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|||.+|+.|..+|++||+||||-|.|...+.++.+++.+.
T Consensus       407 QQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l  447 (500)
T COG1129         407 QQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL  447 (500)
T ss_pred             hhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999764

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.66  E-value=5.2e-16  Score=154.19  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=55.1

Q ss_pred             HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhcc---CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~---~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..++++.++++   ....+..||+||+||+.+|++|+.   +|+++||||||++||+..++.+.++|.+.
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l  877 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL  877 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            45667777775   356778999999999999999986   58999999999999999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.65  E-value=6.6e-16  Score=160.23  Aligned_cols=62  Identities=11%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             HHHHhhcCC---CCCCCCCCCccccchhhhhhhhc---cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~---~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++++.+++.   .+..+..||+||+||+++|++|+   .+|+++|+||||++||+...+.+.++|++.
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L  858 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL  858 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            567777775   35677899999999999999997   699999999999999999999999999763

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.60  E-value=7e-16  Score=128.90  Aligned_cols=113  Identities=10%  Similarity=0.054  Sum_probs=73.9

Q ss_pred             ccccceecCCC-eEEEEECCCCCcHHHHHHHHH-HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           97 TSALASNVNVK-HIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        97 l~~vsl~i~~G-eiv~LiGpNGsGKSTLlk~L~-gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      +.++||++.+| ++++|+||||||||||+|+|+ +.+.   +             ..|..++....            . 
T Consensus        17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~-------------~~G~~vp~~~~------------~-   67 (200)
T cd03280          17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---A-------------QSGLPIPAAEG------------S-   67 (200)
T ss_pred             eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---H-------------HcCCCcccccc------------c-
Confidence            36789999999 489999999999999999998 3321   1             11111111100            0 


Q ss_pred             HHHHhcCC-CCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH-H
Q 025256          175 EAHARRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-M  250 (255)
Q Consensus       175 ~~~~~~g~-~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~-l  250 (255)
                          ..++ .+.+         ..++.  ........||+||+|++.++.++ .+|+++|+|||+.++|+..+..+.. +
T Consensus        68 ----~~~~~~~~~---------~~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~  133 (200)
T cd03280          68 ----SLPVFENIF---------ADIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAI  133 (200)
T ss_pred             ----cCcCccEEE---------EecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHH
Confidence                0010 0000         00010  12234568999999999988775 6999999999999999998888753 4


Q ss_pred             HH
Q 025256          251 FD  252 (255)
Q Consensus       251 l~  252 (255)
                      +.
T Consensus       134 l~  135 (200)
T cd03280         134 LE  135 (200)
T ss_pred             HH
Confidence            43

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.60  E-value=2.2e-15  Score=135.00  Aligned_cols=158  Identities=15%  Similarity=0.094  Sum_probs=107.2

Q ss_pred             Eccceeeccccccc--cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe-
Q 025256           80 ARCMDEVYDALAQR--LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP-  156 (255)
Q Consensus        80 i~~lsk~y~~~~~~--i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~-  156 (255)
                      +.+|..+|+..+..  -.+++|+||++++|++++|+|+|||||||++++|+|.....+    .    +..+|+.|. +. 
T Consensus       380 ~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~----e----e~y~p~sg~-v~v  450 (593)
T COG2401         380 FQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRG----E----EKYRPDSGK-VEV  450 (593)
T ss_pred             HHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhccc----c----cccCCCCCc-eec
Confidence            44555666654322  236799999999999999999999999999999999874221    1    111333333 22 


Q ss_pred             --------cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC----CCCCCCCCccccchhhhhhhhc
Q 025256          157 --------MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       157 --------~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                              +.+.+-+  .+.   ... +...+. ...-|.....+++...++..    .....+||-|||.|+.+|.+++
T Consensus       451 p~nt~~a~iPge~Ep--~f~---~~t-ilehl~-s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAklla  523 (593)
T COG2401         451 PKNTVSALIPGEYEP--EFG---EVT-ILEHLR-SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLA  523 (593)
T ss_pred             cccchhhccCccccc--ccC---chh-HHHHHh-hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHh
Confidence                    1221100  011   001 111111 12234556778888888763    4456799999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..|.+++.||-.+.||+.+...+..-|.+
T Consensus       524 erpn~~~iDEF~AhLD~~TA~rVArkise  552 (593)
T COG2401         524 ERPNVLLIDEFAAHLDELTAVRVARKISE  552 (593)
T ss_pred             cCCCcEEhhhhhhhcCHHHHHHHHHHHHH
Confidence            99999999999999999988877776654

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.60  E-value=1.4e-15  Score=128.97  Aligned_cols=130  Identities=26%  Similarity=0.368  Sum_probs=96.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (255)
                      ++||+||||||||||++.|++++.   ++.+        ... ..++++|+++.....+.  +. . .....++|.+++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~-v~vi~~D~f~~~~~~~~--~~-~-~~~~~g~p~~~d~   64 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPN-VELITTDGFLYPNKELI--ER-G-LMDRKGFPESYDM   64 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCc-EEEEecCcccCcHHHHH--Hh-h-hhhcCCCcccCCH
Confidence            589999999999999999999994   2110        112 34588999975432111  11 1 1124667888999


Q ss_pred             HHHHHHHHhhcC-CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh-HHHHHHHHHHHhh
Q 025256          189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~l-~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~-~~~~~l~~ll~~~  254 (255)
                      ..+.++++.+.. +....+|.||+...++.......+.+++|+|+||.++..|+ ..|..+.+++|.+
T Consensus        65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~  132 (220)
T cd02025          65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFS  132 (220)
T ss_pred             HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeE
Confidence            999999999998 46789999999999988766554678899999999999884 4567788877754

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.60  E-value=3.6e-16  Score=141.26  Aligned_cols=162  Identities=19%  Similarity=0.203  Sum_probs=99.5

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE------
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL------  155 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i------  155 (255)
                      ++..+|+...=   .|..+= ...+|+++||+||||-||||.+|+|+|.+.   |.-|..-+    +|.+-.++      
T Consensus        79 e~vHRYg~NgF---kL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrGt  147 (591)
T COG1245          79 EVVHRYGVNGF---KLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRGT  147 (591)
T ss_pred             cceeeccCCce---EEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhhh
Confidence            46778876321   112211 356799999999999999999999999997   77765211    11111100      


Q ss_pred             ecCCCC--CcCccCCcccChHHHH----HhcC----CCCCC-cHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          156 PMDGFH--LYLSQLDAMEDPKEAH----ARRG----APWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~d~~~--~~~~~l~~~e~~~~~~----~~~g----~~~~~-~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                      .+.+|+  +...++.+...+.+.-    ...|    +.... ..-.+.++.+.+++.  .+..+.+||||+-||+++|.+
T Consensus       148 ELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~  227 (591)
T COG1245         148 ELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAA  227 (591)
T ss_pred             HHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHH
Confidence            000000  0000011110011100    0000    00000 001235666666665  577889999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.++|++++|||++.||...+-.+..++.+.
T Consensus       228 l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel  259 (591)
T COG1245         228 LLRDADVYFFDEPSSYLDIRQRLNAARVIREL  259 (591)
T ss_pred             HhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888764

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.59  E-value=1.9e-15  Score=132.62  Aligned_cols=135  Identities=24%  Similarity=0.363  Sum_probs=100.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (255)
                      +...++||+||||||||||+++|.+++. .||+.|           ...++.+|+++.....+..   .. .....|+|+
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g-----------~V~vi~~D~f~~~~~~l~~---~g-~~~~~g~P~  123 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHR-----------KVELITTDGFLHPNQVLKE---RN-LMKKKGFPE  123 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCC-----------ceEEEecccccccHHHHHH---cC-CccccCCCh
Confidence            4568999999999999999999999984 233332           2345789998754321110   00 123567889


Q ss_pred             CCcHHHHHHHHHhhcCCCC-CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh------HHHHHHHHHHHhhC
Q 025256          185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKW  255 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~------~~~~~l~~ll~~~~  255 (255)
                      .++...+.+.+..+.-+.. ..+|.||+....++.-....+.+++|||+||.+...++      ..|..+.+++|.+|
T Consensus       124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~I  201 (290)
T TIGR00554       124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI  201 (290)
T ss_pred             hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEE
Confidence            9999999999999988864 89999999999988766556678999999999888543      45777888887653

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.58  E-value=4.1e-15  Score=136.08  Aligned_cols=162  Identities=14%  Similarity=0.119  Sum_probs=114.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      -|.+++.+|++.|...+-  ..+.++++.++--..++++|+||+||||++|++.+.+.   |.+|.+ ...   +...+.
T Consensus       360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~  431 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY  431 (582)
T ss_pred             CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence            468999999999976432  35699999999999999999999999999999999886   777752 221   111121


Q ss_pred             EEecCCCCCcCccCCcccChHHHHH-hcCCCCCCcHHHHHHHHHhhcCCCC---CCCCCCCccccchhhhhhhhccCCcE
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                       ..+  +++..  ++..  ...... ...+|.. ..+.+...+..+++..+   ..+..||||||-||++|.....+|.+
T Consensus       432 -f~Q--hhvd~--l~~~--v~~vd~~~~~~pG~-~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Phl  503 (582)
T KOG0062|consen  432 -FAQ--HHVDF--LDKN--VNAVDFMEKSFPGK-TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHL  503 (582)
T ss_pred             -hhH--hhhhH--HHHH--hHHHHHHHHhCCCC-CHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcE
Confidence             111  11110  1111  111110 1112222 45677888888988743   33678999999999999999999999


Q ss_pred             EEEeCCCCCCChHHHHHHHHHHH
Q 025256          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       230 lilDEp~~~LD~~~~~~l~~ll~  252 (255)
                      |+|||||+.||.++-..+...|.
T Consensus       504 LVLDEPTNhLD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  504 LVLDEPTNHLDRDSLGALAKALK  526 (582)
T ss_pred             EEecCCCccccHHHHHHHHHHHH
Confidence            99999999999988888776653

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.57  E-value=3.5e-15  Score=136.86  Aligned_cols=161  Identities=14%  Similarity=0.058  Sum_probs=105.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ccccCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~~~~~~~~~~~~g~~i  155 (255)
                      -|.++||-..-+..  .+ ++..++|.|++|--+.|+||||||||+|+|+|.|+.    |.. |....   .+++.-.++
T Consensus       481 gI~lenIpvItP~~--~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~---P~~~~mFYI  550 (728)
T KOG0064|consen  481 GIILENIPVITPAG--DV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW----PVYNGLLSI---PRPNNIFYI  550 (728)
T ss_pred             ceEEecCceeccCc--ce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccC----cccCCeeec---CCCcceEec
Confidence            37788888887663  33 569999999999999999999999999999999996    653 33111   123333334


Q ss_pred             ecCCCCCc---CccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----------CCCCCCCCCccccchhhhhh
Q 025256          156 PMDGFHLY---LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       156 ~~d~~~~~---~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~lS~G~~qrv~~a~  221 (255)
                      ++..|.--   +.+. ...+......+.|+.    ...+..+++.+.+.           ..-....||||+|||+++||
T Consensus       551 PQRPYms~gtlRDQI-IYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mAR  625 (728)
T KOG0064|consen  551 PQRPYMSGGTLRDQI-IYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMAR  625 (728)
T ss_pred             cCCCccCcCccccee-ecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHH
Confidence            43332110   0000 011111122234543    23344555555442           11233589999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      .+-+.|+..+|||-|++..+.....+.+...
T Consensus       626 m~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  626 MFYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             HHhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence            9999999999999999988877777766543

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=3.1e-14  Score=120.18  Aligned_cols=51  Identities=16%  Similarity=-0.029  Sum_probs=43.4

Q ss_pred             CCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+..||+||+|++.++.++    +.+|+++|+|||+++||+..+..+.+++.+
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~  175 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE  175 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            445669999999998766443    579999999999999999999999998865

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.54  E-value=1.4e-14  Score=118.99  Aligned_cols=46  Identities=17%  Similarity=0.133  Sum_probs=42.6

Q ss_pred             CCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+||++++++++    .+|+++|+|||++++|+..++.+.+++.+.
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~  144 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM  144 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999985    689999999999999999999999988753

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.53  E-value=2.8e-14  Score=115.39  Aligned_cols=45  Identities=16%  Similarity=0.093  Sum_probs=41.4

Q ss_pred             CCccccchhhhhhhhcc----CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          209 FDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~~----~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||++|+.+++++..    +|+++|+|||+.++|+..+..+.+.+.+
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~  126 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE  126 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999976    7899999999999999999988887754

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.52  E-value=1.3e-14  Score=121.17  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=30.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++++++++.  |++++|+||||||||||+|+|+|..
T Consensus        16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            458877665  7999999999999999999999976

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=4.1e-14  Score=127.67  Aligned_cols=150  Identities=17%  Similarity=0.092  Sum_probs=92.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -|.++|.+.+..+.-    .+.+.++.|-.|..+||+||||-||||||+.|+..--.             .++.+-.++.
T Consensus       264 DIKiEnF~ISA~Gk~----LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala-------------IPpnIDvLlC  326 (807)
T KOG0066|consen  264 DIKIENFDISAQGKL----LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA-------------IPPNIDVLLC  326 (807)
T ss_pred             cceeeeeeeecccce----eeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc-------------CCCCCceEee
Confidence            378888888876643    56999999999999999999999999999999876421             1222222111


Q ss_pred             cCCCCCcCccCCcc-----------cChHHHHHhcC---CCCCCc-------------------HHHHHHHHHhhcCC--
Q 025256          157 MDGFHLYLSQLDAM-----------EDPKEAHARRG---APWTFN-------------------PLLLLNCLKNLRNQ--  201 (255)
Q Consensus       157 ~d~~~~~~~~l~~~-----------e~~~~~~~~~g---~~~~~~-------------------~~~~~~~l~~l~l~--  201 (255)
                      -... +.. ..+..           +.++......+   -.....                   ......+|.-|++.  
T Consensus       327 EQEv-vad-~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskE  404 (807)
T KOG0066|consen  327 EQEV-VAD-STSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKE  404 (807)
T ss_pred             eeee-eec-CcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChh
Confidence            1110 000 00100           00000000000   011111                   12233444444443  


Q ss_pred             -CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256          202 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       202 -~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~  245 (255)
                       .+..-..||||.+.||.+||||...|.+|.|||||+.||-...-
T Consensus       405 MQ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVI  449 (807)
T KOG0066|consen  405 MQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVI  449 (807)
T ss_pred             HhcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceee
Confidence             23444589999999999999999999999999999999976543

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.48  E-value=5.3e-14  Score=120.48  Aligned_cols=134  Identities=34%  Similarity=0.585  Sum_probs=111.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (255)
                      +..-+|||.|+.|+||||+.+.|.-++. .||.+          + ...++++|||+.+...+..    .-.+.+.|+|+
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~~----------~-~v~lvpmDGFhy~n~~L~~----~glm~rKGfPe  143 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLS-RWPES----------P-KVDLVTMDGFHYPNAVLDE----RGLMARKGFPE  143 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHh-hCCCC----------C-ceEEEeccccccCHhHhhh----ccccccCCCCc
Confidence            4467899999999999999999999995 34432          2 3556999999887644442    23455789999


Q ss_pred             CCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          185 TFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|...+.+.+..++-+. ++.+|.||+-....++-+..+..+|+|||+||+..++|...|-.+.+++|..
T Consensus       144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfS  214 (283)
T COG1072         144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFS  214 (283)
T ss_pred             cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEE
Confidence            999999999999999664 5999999999999999999999999999999999999998888888877643

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.47  E-value=3.1e-13  Score=123.54  Aligned_cols=172  Identities=16%  Similarity=0.131  Sum_probs=118.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----CC
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~~  149 (255)
                      -+++++++|+..-...   +.++++|||++++|||+||+|-.|-|-+.|+..|+|+.+   |.+|+ .+++...    .+
T Consensus       255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~  328 (501)
T COG3845         255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP  328 (501)
T ss_pred             CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence            4689999999876542   337899999999999999999999999999999999986   77788 4555332    00


Q ss_pred             ------CeeEEEecCCCC-CcCccCCcccChHHHHHhc------CC-CCCCcHHHHHHHHHhhcCC---CCCCCCCCCcc
Q 025256          150 ------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       150 ------~~g~~i~~d~~~-~~~~~l~~~e~~~~~~~~~------g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (255)
                            ..+. |+-|-.. -.-.+++..+|........      ++ ..........++++.+...   .......||||
T Consensus       329 ~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG  407 (501)
T COG3845         329 RERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG  407 (501)
T ss_pred             HHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence                  1111 2211100 0001234444443322211      11 0111122335566666554   34556799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+||+-+||-+..+|++||+-.||-|||....+.+.+.|.+
T Consensus       408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e  448 (501)
T COG3845         408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE  448 (501)
T ss_pred             ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888887754

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.47  E-value=3.8e-14  Score=120.35  Aligned_cols=109  Identities=14%  Similarity=0.090  Sum_probs=75.2

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +.+|+++++.++++++|.||||+|||||+++++-..-                      +.+-|.+++-     ..    
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~----   67 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS----   67 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence            5699999999999999999999999999999885431                      1122211110     00    


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCC---CCCCChHHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKD  246 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp---~~~LD~~~~~~  246 (255)
                        ...+        .+.+++..+++.... ...+|.|+++++.+++++  +.+|+++|+|||   |+++|......
T Consensus        68 --~~~~--------~~~~il~~~~l~d~~-~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~  132 (222)
T cd03285          68 --ADIP--------IVDCILARVGASDSQ-LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW  132 (222)
T ss_pred             --EEEe--------ccceeEeeeccccch-hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence              0000        111223333333222 467999999999999888  889999999999   88899876643

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.46  E-value=2.6e-14  Score=119.58  Aligned_cols=109  Identities=11%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~  178 (255)
                      ..++++..|++++|+||||||||||+++|++..-               ....|.++.-...                  
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~---------------~~~~g~~~~~~~~------------------   67 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL---------------LAQIGCFVPAESA------------------   67 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH---------------HHHcCCCcccccc------------------
Confidence            3455666899999999999999999999996541               1111111100000                  


Q ss_pred             hcCCCCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          179 RRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      ..++..+        ++..+..  ........|+.+++| +..+.+++.+|+++|+|||++++|+.....+..
T Consensus        68 ~i~~~dq--------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          68 SIPLVDR--------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             ccCCcCE--------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence            0000000        0000000  011223456666665 555667778999999999999999987776644

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.46  E-value=2.5e-13  Score=113.52  Aligned_cols=125  Identities=27%  Similarity=0.386  Sum_probs=98.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (255)
                      ++.-+|||.|+|||||||+++.|.-+++               .. ...++++|+|+...++.+..++..   .++..|.
T Consensus         6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~-~~~~I~~D~YYk~~~~~~~~~~~~---~n~d~p~   66 (218)
T COG0572           6 EKVIIIGIAGGSGSGKTTVAKELSEQLG---------------VE-KVVVISLDDYYKDQSHLPFEERNK---INYDHPE   66 (218)
T ss_pred             CceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cC-cceEeeccccccchhhcCHhhcCC---cCccChh
Confidence            3457999999999999999999999994               23 344589999987655444332222   2556688


Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+.+.+.+..|.-+..+..|.||+-+..|..-. .-..+.+|+|+||.+...|+    .++++++.
T Consensus        67 A~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~-i~~~p~~VVIvEGi~~l~d~----~lr~~~d~  130 (218)
T COG0572          67 AFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPET-IKVEPNDVVIVEGILLLYDE----RLRDLMDL  130 (218)
T ss_pred             hhcHHHHHHHHHHHHcCCcccccccchhcccccCCc-cccCCCcEEEEecccccccH----HHHhhcCE
Confidence            999999999999999999999999999888888522 23457899999999999994    67766654

>PTZ00301 uridine kinase; Provisional

Probab=99.45  E-value=1.8e-13  Score=115.16  Aligned_cols=127  Identities=23%  Similarity=0.339  Sum_probs=93.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~  187 (255)
                      -+|||.|++|||||||++.|...+..   ..         .+....++.+|+|+....+++..+   ....+++.|++++
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~---~~---------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D   68 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMA---HC---------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE   68 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHh---hc---------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence            68999999999999999998876631   00         122344588999886654333221   1123667789999


Q ss_pred             HHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       188 ~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...+.+.+..+.-+.....|.|++....|..-.. .+.+++|+|+||.++..++    ++.+++|.+
T Consensus        69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~-~i~p~~ViIvEGi~~l~~~----~l~~l~D~~  130 (210)
T PTZ00301         69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAV-TMTPKSVLIVEGILLFTNA----ELRNEMDCL  130 (210)
T ss_pred             HHHHHHHHHHHHcCCcccCCCcccccCCcCCceE-EeCCCcEEEEechhhhCCH----HHHHhCCEE
Confidence            9999999999998888999999998888875433 3457799999999997675    666666654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.45  E-value=5.4e-14  Score=117.88  Aligned_cols=109  Identities=12%  Similarity=0.024  Sum_probs=73.2

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +.+|+++++++|++++|+||||+||||++++++++.-               ....|..+  ....   ..++..     
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~-----   72 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIF-----   72 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccCh-----
Confidence            5699999999999999999999999999999998873               22222211  0000   001111     


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~  246 (255)
                                      ..++..++..  .......||.|+++. ..+.+++.+++++|+|||+.++|+.....
T Consensus        73 ----------------d~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~  128 (204)
T cd03282          73 ----------------NRLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFA  128 (204)
T ss_pred             ----------------hheeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence                            1112222222  233456889999975 45566778999999999999999865443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.45  E-value=5.7e-13  Score=133.42  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=115.9

Q ss_pred             ccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC----C-CCeeEEEecCCCCCcCcc
Q 025256           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        93 ~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~----~-~~~g~~i~~d~~~~~~~~  166 (255)
                      .+.+++|++.-+++|+.+.++||.||||||||+.|+|-+.+..-..|+ .++|...    + .+.+ ++.+++.+  .+.
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~a-Y~~e~DvH--~p~  203 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVA-YNSEQDVH--FPE  203 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEE-eccccccc--cce
Confidence            345789999999999999999999999999999999998644333455 3555321    2 2222 24555544  445


Q ss_pred             CCcccChHHHHHhcCC---CCCCc-HH----HHHHHHHhhcCC-------CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          167 LDAMEDPKEAHARRGA---PWTFN-PL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       167 l~~~e~~~~~~~~~g~---~~~~~-~~----~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      +|+.+-+++..+-.+.   .++.. .+    ....+++.+++.       .+....-.|||||+||.++-+++.++.++.
T Consensus       204 lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~  283 (1391)
T KOG0065|consen  204 LTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILF  283 (1391)
T ss_pred             eEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceee
Confidence            8998888877654432   11111 12    133567777765       344566899999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .||++.|||..+.-++.+.+..
T Consensus       284 ~De~t~GLDSsTal~iik~lr~  305 (1391)
T KOG0065|consen  284 WDEITRGLDSSTAFQIIKALRQ  305 (1391)
T ss_pred             eecccccccHHHHHHHHHHHHH
Confidence            9999999999998888887764

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.44  E-value=3.3e-13  Score=112.36  Aligned_cols=113  Identities=26%  Similarity=0.461  Sum_probs=75.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (255)
                      ++||+||||||||||+++|++++.               ... ..++..|+++...   ...+........++.+..++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~-~~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~   61 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPK-VVIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF   61 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---------------CCC-eEEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence            589999999999999999999983               222 3348888876432   222211111223445666777


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      +.+.+.+..+..+.....|.|+....+++.... .+.+++++|+|+++++.++
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~-~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV-TVYPADVIILEGILALYDK  113 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce-ecCCCCEEEEechhhccch
Confidence            777788888887766666655544333332222 4678999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05439 pantothenate kinase; Provisional

Probab=99.42  E-value=1.9e-13  Score=120.90  Aligned_cols=133  Identities=28%  Similarity=0.406  Sum_probs=99.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (255)
                      ..-+|||.|++|||||||++.|..++.+ |+           ......++.+|||+.....+..    ......+|.|++
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~-~~-----------~~~~v~vi~~DdFy~~~~~l~~----~~l~~~kg~Pes  148 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSR-WP-----------EHPKVELVTTDGFLYPNAVLEE----RGLMKRKGFPES  148 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh-hC-----------CCCceEEEeccccccCHHHHhh----hhccccCCCccc
Confidence            3568999999999999999999998841 00           1122345999999865433221    112235788999


Q ss_pred             CcHHHHHHHHHhhcCCCC-CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH--HHHHHHHHHHhh
Q 025256          186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEK  254 (255)
Q Consensus       186 ~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~--~~~~l~~ll~~~  254 (255)
                      ++...+.+.+..+.-+.. +..|.||+-...++.-....+.+++|||+||.+.+.++.  .|..+.+++|.+
T Consensus       149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~  220 (311)
T PRK05439        149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFS  220 (311)
T ss_pred             ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEE
Confidence            999999999999998875 899999999988885554556789999999998886554  577788887764

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.41  E-value=4.5e-13  Score=117.38  Aligned_cols=47  Identities=17%  Similarity=0.018  Sum_probs=42.1

Q ss_pred             CCCccccchhhhhhhhcc----CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       208 ~lS~G~~qrv~~a~~l~~----~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .||+||+||+++|++++.    +|+++|+|||+++||+..+..+.++|.+.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~  220 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL  220 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            489999999999986543    99999999999999999999999988753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00235 udk uridine kinase

Probab=99.41  E-value=3.8e-13  Score=112.96  Aligned_cols=118  Identities=24%  Similarity=0.369  Sum_probs=79.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~  183 (255)
                      -++|++++|+||||||||||++.|++++.               ....+ ++.+|+++.........+   .....++.+
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~   63 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHP   63 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCc
Confidence            36799999999999999999999999984               22333 478888754322111111   001112234


Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      ..++...+.+.++.+..+.....|.|+.....+... ...+.+.+++|+|+.++.+++
T Consensus        64 ~~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~  120 (207)
T TIGR00235        64 DAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE  120 (207)
T ss_pred             cHhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH
Confidence            455666677788888778888889888766655332 223457899999999888764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.39  E-value=5.4e-13  Score=113.78  Aligned_cols=133  Identities=43%  Similarity=0.708  Sum_probs=93.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE-EecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~-i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      -.+..++||+||||||||||++.|+++++   ++.|.           ..+ +.+|+++.....+.  ..  ......+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~-----------~~v~i~~D~~~~~~~~~~--~~--g~~~~~~~   91 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL-----------PAIQVPMDGFHLDNAVLD--AH--GLRPRKGA   91 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC-----------ceEEEecccccCCHHHHH--hc--ccccccCC
Confidence            35678999999999999999999999995   33331           112 67888764321111  00  01112345


Q ss_pred             CCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..++...+..++..+..+. ....|.|+....+.+.-...+...++++|+|+.+..++...+..+.+++|.+
T Consensus        92 ~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~v  164 (229)
T PRK09270         92 PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFT  164 (229)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEE
Confidence            67778888888888888776 7888999998887765444444467899999999998877777777666543

>PLN02796 D-glycerate 3-kinase

Probab=99.35  E-value=1.2e-12  Score=116.76  Aligned_cols=133  Identities=23%  Similarity=0.324  Sum_probs=90.7

Q ss_pred             cccccceec---CCCeE-----EEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccC
Q 025256           96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL  167 (255)
Q Consensus        96 ~l~~vsl~i---~~Gei-----v~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l  167 (255)
                      +++++++.+   ++|+.     +||+|++|||||||++.|.+++.   +. |         ...+. +++|++++...+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~  146 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ  146 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence            567888887   45655     99999999999999999999994   11 1         12454 8999998643211


Q ss_pred             Ccc--cCh-HHHHHhcCCCCCCcHHHHHHHHHhhc----CCCCCCCCCCCcc----ccchhhhh--hhhccCCcEEEEeC
Q 025256          168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDHG----VGDPVEDD--ILVGLQHKVVIVDG  234 (255)
Q Consensus       168 ~~~--e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----l~~~~~~~~lS~G----~~qrv~~a--~~l~~~~~ililDE  234 (255)
                      ...  +++ ......+|.+.+++.....+.++.+.    -+..+.+|.|+..    +..|....  ..+..+++|||+||
T Consensus       147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG  226 (347)
T PLN02796        147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG  226 (347)
T ss_pred             HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence            111  111 11223456677888888888888876    4567889988864    45576432  23345789999999


Q ss_pred             CCCCCChH
Q 025256          235 NYLFLDGG  242 (255)
Q Consensus       235 p~~~LD~~  242 (255)
                      .+.|.-+.
T Consensus       227 w~vG~~p~  234 (347)
T PLN02796        227 WMLGFKPL  234 (347)
T ss_pred             cccCCCCC
Confidence            99998553

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.34  E-value=4.8e-12  Score=106.30  Aligned_cols=117  Identities=25%  Similarity=0.398  Sum_probs=80.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCC
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (255)
                      .++.+|+|.|+||||||||++.|++.+.               ..... ++.+|+++.....++..   ......++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~---~~~~~~~~~~~   64 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIA-VIPQDSYYKDQSHLSFE---ERVKTNYDHPD   64 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceE-EEeCCccccCcccCCHH---HhcccCccCcc
Confidence            4688999999999999999999999983               23333 47888886543222211   11112334466


Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      .++...+.+.++.+..+.....|.|+.....+.... ....+.+++|+|++++..++
T Consensus        65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~  120 (209)
T PRK05480         65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE  120 (209)
T ss_pred             cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence            777888888888888777777888876555554321 12356789999999998764

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.32  E-value=2.7e-12  Score=115.58  Aligned_cols=140  Identities=15%  Similarity=0.186  Sum_probs=90.8

Q ss_pred             cccceecCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcC-ccCCccc
Q 025256           98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAME  171 (255)
Q Consensus        98 ~~vsl~i~~G-----eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~-~~l~~~e  171 (255)
                      .+..|.|+.|     +++..+|.||.|||||+++++|.++   |+.|..+.      ...  +++-...+.. ..-++..
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p------~ln--VSykpqkispK~~~tvR~  421 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIP------VLN--VSYKPQKISPKREGTVRQ  421 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCccc------ccc--eeccccccCccccchHHH
Confidence            5556666665     5688999999999999999999987   77764100      000  1111111110 0011111


Q ss_pred             ChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      ..  ....+.  ...+.....++++-|.+.  .+..+..+|||+.||++++..|-..++++++|||.+.||.+++.....
T Consensus       422 ll--~~kIr~--ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask  497 (592)
T KOG0063|consen  422 LL--HTKIRD--AYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK  497 (592)
T ss_pred             HH--HHHhHh--hhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence            00  011111  112334456677766655  466778999999999999999999999999999999999998876655


Q ss_pred             HHH
Q 025256          250 MFD  252 (255)
Q Consensus       250 ll~  252 (255)
                      .+.
T Consensus       498 vik  500 (592)
T KOG0063|consen  498 VIK  500 (592)
T ss_pred             HHH
Confidence            543

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.30  E-value=1.7e-11  Score=117.74  Aligned_cols=63  Identities=14%  Similarity=0.033  Sum_probs=52.2

Q ss_pred             HHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       192 ~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.|..++++   .-.....||||+.||+.+|..|....   .++||||||.||-..-.+++++.|+..
T Consensus       803 LqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL  871 (935)
T COG0178         803 LQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL  871 (935)
T ss_pred             HHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence            3445555665   45667799999999999999997666   899999999999999999999988765

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.28  E-value=1.6e-11  Score=128.04  Aligned_cols=66  Identities=11%  Similarity=-0.066  Sum_probs=56.9

Q ss_pred             HHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++.|..++++   .....+.|||||.||+.+|..|..+   +.++||||||.||++...+.+.++|+..
T Consensus      1677 ~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635       1677 QKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred             HHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            3446777788887   5677889999999999999999754   6899999999999999999999998865

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.25  E-value=9.8e-12  Score=108.60  Aligned_cols=47  Identities=13%  Similarity=0.053  Sum_probs=42.3

Q ss_pred             CCCCccccchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          207 PSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..+|.||++++.++++++         .+|+++|+|||+++||+..++.+.+.+.+
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~  237 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG  237 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc
Confidence            357999999999999875         69999999999999999999999998853

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.24  E-value=5.6e-13  Score=110.79  Aligned_cols=127  Identities=31%  Similarity=0.508  Sum_probs=84.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCC-CeeEEEecCCCCCcCccCCcccChHHH--HHhcCCCCC
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP-DVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWT  185 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~-~~g~~i~~d~~~~~~~~l~~~e~~~~~--~~~~g~~~~  185 (255)
                      +|||.||+|||||||.+.|...++    ..|.       .+ .....+.+|+++...   ...+.....  ...+..|..
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-------~~~~~~~~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a   66 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-------PAMEMDIILSLDDFYDDY---HLRDRKGRGENRYNFDHPDA   66 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT----TCTT-------TCCCSEEEEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC----ccCc-------CccceeEEEeeccccccc---chhhHhhccccccCCCCccc
Confidence            689999999999999999999994    1210       10 012336777764321   000000000  012334677


Q ss_pred             CcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++...+.+.+..|.-+.....|.|++..+.+.. ...+..+++|+|+||.++++|+.    +.+++|.+
T Consensus        67 ~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~~  130 (194)
T PF00485_consen   67 FDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDLK  130 (194)
T ss_dssp             BSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SEE
T ss_pred             cCHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----ecccceeE
Confidence            888889999999998888889999988877776 23345688999999999999974    55555543

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.22  E-value=1.6e-11  Score=115.80  Aligned_cols=117  Identities=24%  Similarity=0.392  Sum_probs=83.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (255)
                      .--+|||+||||||||||++.|++++.                 ..+. +.+|+++...         ......+..+..
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp-----------------~vgv-IsmDdy~~~~---------~~i~~nfD~P~a  116 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP-----------------SIAV-ISMDNYNDSS---------RIIDGNFDDPRL  116 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC-----------------CcEE-EEEcceecch---------hhhCccCCChhh
Confidence            346899999999999999999999872                 2344 8999985221         001112223444


Q ss_pred             CcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++...+.+.+..+.-+.....|.|++-..+|..-....+...+|+|+||.++..+     ++.+++|.+
T Consensus       117 ~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDlk  180 (656)
T PLN02318        117 TDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDLR  180 (656)
T ss_pred             cchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCEE
Confidence            5666677778888888889999999988777643333456889999999999753     577776654

>TIGR01069 mutS2 MutS2 family protein

Probab=99.19  E-value=1.7e-11  Score=120.74  Aligned_cols=115  Identities=10%  Similarity=0.055  Sum_probs=73.1

Q ss_pred             ccceecCCC-eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256           99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus        99 ~vsl~i~~G-eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~  177 (255)
                      .+++.+..+ ++++|+||||+|||||||+|+|..-               .+..|..++.....    .+..      ..
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~----~~~~------~d  367 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHS----EIPY------FE  367 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCccc----cccc------hh
Confidence            367778777 8999999999999999999999831               22222212221100    0000      00


Q ss_pred             HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH-HHHH
Q 025256          178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD  252 (255)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~-~ll~  252 (255)
                      ..+.   ....  -.++.        .....||++|++++.+...+ .++.++|+|||+.|+|+.....+. .+++
T Consensus       368 ~i~~---~i~~--~~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe  429 (771)
T TIGR01069       368 EIFA---DIGD--EQSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE  429 (771)
T ss_pred             heee---ecCh--HhHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            0000   0000  01111        23567999999998877765 689999999999999999888774 4554

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=99.18  E-value=4.5e-11  Score=108.70  Aligned_cols=122  Identities=21%  Similarity=0.304  Sum_probs=79.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcc--cCh-HHHHHhcCCC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRGAP  183 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~--e~~-~~~~~~~g~~  183 (255)
                      .-+|||+|++|||||||++.|.++++   +.          ....+. |.+|++++...+....  .++ ......+|.+
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~----------g~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P  277 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT----------GRKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRGNA  277 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc---cc----------CCceEE-EEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence            47899999999999999999999984   11          112454 8999998642211100  000 0011123556


Q ss_pred             CCCcHHHHHHHHHhh----cCCCCCCCCCCCcc----ccchhhhh--hhhccCCcEEEEeCCCCCCChH
Q 025256          184 WTFNPLLLLNCLKNL----RNQGSVYAPSFDHG----VGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l----~l~~~~~~~~lS~G----~~qrv~~a--~~l~~~~~ililDEp~~~LD~~  242 (255)
                      ..++.....+.++.+    ..+..+.+|.|+..    +..|+...  ..+..+++|||+||++.|..+.
T Consensus       278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~  346 (460)
T PLN03046        278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPL  346 (460)
T ss_pred             ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCC
Confidence            677777666666666    45667888988764    46676542  2334577999999999888553

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.18  E-value=1.4e-11  Score=101.72  Aligned_cols=44  Identities=7%  Similarity=-0.152  Sum_probs=32.3

Q ss_pred             CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~  248 (255)
                      .....||+|++|...+.. .+.+|+++|+|||+.++|+.....+.
T Consensus        57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~  100 (185)
T smart00534       57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIA  100 (185)
T ss_pred             ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHH
Confidence            345678888886443333 34599999999999999998766653

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.18  E-value=6.5e-11  Score=100.17  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+++++++.+ ++++|+||||+|||||+|.+++..
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            55999999887 999999999999999999999865

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.17  E-value=6.9e-11  Score=99.78  Aligned_cols=41  Identities=10%  Similarity=-0.063  Sum_probs=31.4

Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l-~~ll~  252 (255)
                      -+-+|++.+++++.++.++|+|||+.++|+.....+ ..+++
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~  135 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE  135 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence            455788888889999999999999999998653333 34443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.17  E-value=1.1e-10  Score=96.51  Aligned_cols=122  Identities=24%  Similarity=0.338  Sum_probs=83.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (255)
                      +|+|.|++|||||||++.|+..+.                 . ..++.+|+++....++.....   ...+++.|..++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~-----------------~-~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~   59 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP-----------------N-CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM   59 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-----------------C-CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence            589999999999999999999872                 1 234899999876543332111   1125666888899


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccccchhh-------------hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhhC
Q 025256          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~-------------~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~~  255 (255)
                      ..+.+.+..+.-+.....+.++.+......             -+.....+.+++|+|++++..|+    .+.+++|.+|
T Consensus        60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~I  135 (187)
T cd02024          60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIRY  135 (187)
T ss_pred             HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCcee
Confidence            999999998887765555555554432211             12234557789999999988876    4666666543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.12  E-value=1e-10  Score=96.09  Aligned_cols=112  Identities=24%  Similarity=0.333  Sum_probs=76.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (255)
                      +++|.|++|||||||++.|+..+.    ..          .....++.+|+++.+.  ..  +  ......+..+..++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~----~~----------~~~~~~i~~Ddf~~~~--~~--~--~~~~g~~d~~~~~d~   60 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR----VN----------GIGPVVISLDDYYVPR--KT--P--RDEDGNYDFESILDL   60 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH----Hc----------CCCEEEEehhhcccCc--cc--c--cccCCCCCCCccccH
Confidence            589999999999999999999984    11          1123458999987543  00  0  000011222333577


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      +.+.+.+..+..+.....|.|+.-..++..-....+.+.+|||+||+++..+
T Consensus        61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~  112 (179)
T cd02028          61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE  112 (179)
T ss_pred             HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence            7788888888878888889998877776653223456789999999999764

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.12  E-value=1.7e-10  Score=97.42  Aligned_cols=62  Identities=18%  Similarity=0.082  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+...+..+.+..    ..+|+||+..+++|..+    ..+.+++||||+.+.||...+..+.++|.+.
T Consensus       121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~  186 (220)
T PF02463_consen  121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL  186 (220)
T ss_dssp             HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH
T ss_pred             cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44445555544433    38999999999877544    4578899999999999999999999998753

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PLN02348 phosphoribulokinase

Probab=99.10  E-value=1.3e-10  Score=105.27  Aligned_cols=121  Identities=22%  Similarity=0.296  Sum_probs=82.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC----CCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~  180 (255)
                      ..-+|||.|++|||||||++.|...+.    ..+. ...+    +....+...++.+|+|+.....         .+...
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~  114 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEK  114 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhhc
Confidence            456999999999999999999999984    1111 0000    0111234556899999754311         01111


Q ss_pred             C----CCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          181 G----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       181 g----~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      +    .|...+...+.+.++.|..+.....|.|++-...+..-  ..+.+++|||+||.+..+|+
T Consensus       115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e  177 (395)
T PLN02348        115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDE  177 (395)
T ss_pred             CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCc
Confidence            1    14556667788889999988889999998876654432  23557899999999998885

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.10  E-value=2.8e-10  Score=99.55  Aligned_cols=106  Identities=27%  Similarity=0.417  Sum_probs=69.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC----CC
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW  184 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~----~~  184 (255)
                      ++||+|+||||||||++.|++++.                +..+.++..|+++..    ..     ..+...|+    +.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~-----~~r~~~g~~~~~p~   55 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG----------------SDLVTVICLDDYHSL----DR-----KGRKETGITALDPR   55 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC----------------CCceEEEECcccccC----CH-----HHHHHhhccccccc
Confidence            589999999999999999999993                334555777876421    11     11122232    22


Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      ..+.....+.++.+.-+.....|.|+.-......  ...+.+.+++|+|++++..++
T Consensus        56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~  110 (273)
T cd02026          56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE  110 (273)
T ss_pred             chhHHHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch
Confidence            2334455667777777777777888766554322  112346799999999987774

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.02  E-value=1e-09  Score=93.69  Aligned_cols=131  Identities=15%  Similarity=0.103  Sum_probs=72.2

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHH-HHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTL-lk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      +.++++.+.+++             .+++|++++|.|+|||||||| ++.+++.++               +...+.++.
T Consensus         8 ~~~~~ld~~l~g-------------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---------------~g~~~~yi~   59 (230)
T PRK08533          8 LSRDELHKRLGG-------------GIPAGSLILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVS   59 (230)
T ss_pred             EEEeeeehhhCC-------------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------------CCCcEEEEe
Confidence            445566666654             268899999999999999999 688998874               222233333


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh----ccCCcEEEE
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIV  232 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l----~~~~~ilil  232 (255)
                      .+.        +..+..... ..+|+    +...... ...+.. .... +.++++..++..+.+.+    ..+|+++++
T Consensus        60 ~e~--------~~~~~~~~~-~~~g~----~~~~~~~-~~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVI  123 (230)
T PRK08533         60 TQL--------TTTEFIKQM-MSLGY----DINKKLI-SGKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIII  123 (230)
T ss_pred             CCC--------CHHHHHHHH-HHhCC----chHHHhh-cCcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEE
Confidence            222        111111111 23332    1111100 011111 1111 34555543333222222    236999999


Q ss_pred             eCCCCCC----ChHHHHHHHHHHH
Q 025256          233 DGNYLFL----DGGVWKDVSSMFD  252 (255)
Q Consensus       233 DEp~~~L----D~~~~~~l~~ll~  252 (255)
                      |||++++    |+..++++.+++.
T Consensus       124 De~t~~l~~~~d~~~~~~l~~~l~  147 (230)
T PRK08533        124 DSLSSLISNDASEVAVNDLMAFFK  147 (230)
T ss_pred             ECccHHhcCCcchHHHHHHHHHHH
Confidence            9999998    7777777877765

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.01  E-value=2.2e-10  Score=96.49  Aligned_cols=42  Identities=7%  Similarity=-0.057  Sum_probs=39.1

Q ss_pred             ccchhhhhhhhccCCcEEEEeCCC-----CCCChHHHHHHHHHHHhh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~-----~~LD~~~~~~l~~ll~~~  254 (255)
                      +++++.+|++++.+|+++++|||+     ++||+..++++.+++.+.
T Consensus       157 ~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        157 EKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             HHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            777789999999999999999999     999999999999999764

>PRK07429 phosphoribulokinase; Provisional

Probab=99.01  E-value=1.5e-09  Score=97.16  Aligned_cols=116  Identities=25%  Similarity=0.430  Sum_probs=75.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC----
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----  182 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~----  182 (255)
                      --++||+|+||||||||++.|++++.                +..+.++.+|+++..    .     ...+...+.    
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~-----~~~r~~~g~~~l~   62 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----D-----RKQRKELGITALD   62 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----C-----HHHHHhcCCcccC
Confidence            45899999999999999999999983                333445788887421    1     111223332    


Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +...+...+.+.++.+..+.....|.|+........-  ..+.+.+++|+|++++..+.    .+.+++|.
T Consensus        63 p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~----~lr~~~D~  127 (327)
T PRK07429         63 PRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE----RVRELYDF  127 (327)
T ss_pred             ccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH----hHHhhCCE
Confidence            3334455667777777777777777777655544321  12345789999999988775    34444443

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.00  E-value=8.2e-10  Score=93.74  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=33.5

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+++++.+.+|++++|+||||+||||+++++++..
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~   55 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT   55 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            569999999999999999999999999999999943

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.97  E-value=7.4e-10  Score=96.60  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=23.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .-++|+||||||||||++.|+|++.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            5789999999999999999999994

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.95  E-value=6e-10  Score=83.50  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=31.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +|++++|++++|++++|+||||||||||++++.
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            789999999999999999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.94  E-value=6e-10  Score=110.11  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=69.6

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHH
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~  177 (255)
                      +|+++. ..+.++.|.|||++||||+||.++...-               ....|..++-...    ..++..+...   
T Consensus       319 ndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~---------------maq~G~~vpa~~~----~~i~~~~~i~---  375 (782)
T PRK00409        319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAAL---------------MAKSGLPIPANEP----SEIPVFKEIF---  375 (782)
T ss_pred             ceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHH---------------HHHhCCCcccCCC----ccccccceEE---
Confidence            445443 2467899999999999999999976641               1222221221110    0011111100   


Q ss_pred             HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                      ...|..+                ........||++|++++.+++++ .+|.++|+|||+.|+|+.....+..
T Consensus       376 ~~ig~~~----------------si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~  430 (782)
T PRK00409        376 ADIGDEQ----------------SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI  430 (782)
T ss_pred             EecCCcc----------------chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence            0111100                01234578999999999998887 6899999999999999987777643

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.91  E-value=6.3e-09  Score=89.89  Aligned_cols=128  Identities=16%  Similarity=0.116  Sum_probs=81.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH---HHhcCC--C
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA---HARRGA--P  183 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~---~~~~g~--~  183 (255)
                      ++||.|.+||||||+.+.|...+.+              ......++..|+|+.+.. ....+.....   ..++..  |
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P   65 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP   65 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence            5899999999999999999988841              112244588999876321 1111111111   123444  7


Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCCCCCCcc----------ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHG----------VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~G----------~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+.+.+.+.+..++.+.....|.|++-          ...+..-. .+..+.+|||+||.+.++... ..++.+++|.
T Consensus        66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~-~~~lr~~~Dl  143 (277)
T cd02029          66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTE-GYNVAQHADL  143 (277)
T ss_pred             ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccc-cHHHHHhCCe
Confidence            88888999999999999988888888541          11121111 134689999999999765421 1355555543

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.89  E-value=8.1e-10  Score=102.08  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=34.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (255)
                      +|++||+++++||+++|+|||||||||||+  +|++.   |++|
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG   59 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG   59 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence            779999999999999999999999999999  66664   5554

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG4240 Predicted kinase [General function prediction only]

Probab=98.88  E-value=2.9e-09  Score=89.06  Aligned_cols=125  Identities=32%  Similarity=0.479  Sum_probs=91.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccC-CcccChHHHHHhcCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL-DAMEDPKEAHARRGA  182 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l-~~~e~~~~~~~~~g~  182 (255)
                      -.+.-|+||.||.||||||+.-.|..++.    ..|        ....+. .++|++|+...+. ...++.......+|.
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl  113 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL  113 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence            34567999999999999999999999984    111        123344 8999998653211 111111223445788


Q ss_pred             CCCCcHHHHHHHHHhhcCCC-CCCCCCCCc----cccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~----G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      |.+++.....++++.+.-+. .+.+|.|+.    |...|..-......+.+|+|+|+.+.|..|
T Consensus       114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP  177 (300)
T COG4240         114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP  177 (300)
T ss_pred             CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence            99999999999999887764 468889987    899997666666667999999999988654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.85  E-value=7.6e-09  Score=96.64  Aligned_cols=127  Identities=19%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      ++++.++.+++|.+++|+||||+||||++..|++.+.   ...|        ....+ ++..|.+.     ..+.+.+..
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~-LI~~Dt~R-----igA~EQLr~  307 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVA-LLTTDSYR-----IGGHEQLRI  307 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEE-EEeCCccc-----hhHHHHHHH
Confidence            4456677788899999999999999999999999874   2332        12334 46777653     456677777


Q ss_pred             HHHhcCCCCCC--cHHHHHHHHHhhcCCCCCCCCCCCccccchh---hhhhhhccCC-----cEEEEeCCCCCCCh
Q 025256          176 AHARRGAPWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQH-----KVVIVDGNYLFLDG  241 (255)
Q Consensus       176 ~~~~~g~~~~~--~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~~a~~l~~~~-----~ililDEp~~~LD~  241 (255)
                      ....++++...  +.......+..+.-...+.+...  |+.++.   .....++.++     .+|++|..+.+.+.
T Consensus       308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTa--Gr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l  381 (484)
T PRK06995        308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTI--GMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL  381 (484)
T ss_pred             HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCC--CcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH
Confidence            77777764321  22222222333322233344443  433332   2222333332     68999998877553

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.85  E-value=2.3e-09  Score=90.79  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +-+|++|++++|++++|.||||+||||+++++++..
T Consensus        19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            459999999999999999999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.85  E-value=1.3e-09  Score=98.57  Aligned_cols=142  Identities=16%  Similarity=0.167  Sum_probs=85.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE------ecCCCCC--cCccCCcccChHHH
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL------PMDGFHL--YLSQLDAMEDPKEA  176 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i------~~d~~~~--~~~~l~~~e~~~~~  176 (255)
                      .+|++.|++|.||-||||-+++++|-++   |.-|..-+    +++...++      .+.++..  ...++...-.+.+.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyv  170 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYV  170 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHH
Confidence            4699999999999999999999999997   77765211    11111100      0111100  00001100011111


Q ss_pred             HH----hcC----C-CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHH
Q 025256          177 HA----RRG----A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       177 ~~----~~g----~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~  245 (255)
                      ..    ..+    . ....+.....++.+.+.+.  .+..+..+|||+-||.++|.+.+..+|+.++|||-+.||...+.
T Consensus       171 d~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL  250 (592)
T KOG0063|consen  171 DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL  250 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence            00    000    0 0000111222333333333  56678899999999999999999999999999999999999887


Q ss_pred             HHHHHHHh
Q 025256          246 DVSSMFDE  253 (255)
Q Consensus       246 ~l~~ll~~  253 (255)
                      .....|..
T Consensus       251 kaA~~IRs  258 (592)
T KOG0063|consen  251 KAAITIRS  258 (592)
T ss_pred             hHHHHHHH
Confidence            77666654

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.80  E-value=8e-09  Score=95.25  Aligned_cols=131  Identities=15%  Similarity=0.156  Sum_probs=86.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      +.++.+.+++.|....   .+++. .+.+.+|+.++|+|+||+|||||+++|++..                .++.+. +
T Consensus       129 ~~~~r~~i~~~l~TGi---raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~----------------~~~~gv-I  187 (432)
T PRK06793        129 HAFEREEITDVFETGI---KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNA----------------KADINV-I  187 (432)
T ss_pred             CchheechhhccCCCC---EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccC----------------CCCeEE-E
Confidence            3466677888786432   25577 4999999999999999999999999999998                344454 4


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhc-------c
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVG-------L  225 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~-------~  225 (255)
                      ...|..       ..+..++.....+               .-++..   -......|.+++.|++.+.+.+       .
T Consensus       188 ~~iGer-------g~ev~e~~~~~l~---------------~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G  245 (432)
T PRK06793        188 SLVGER-------GREVKDFIRKELG---------------EEGMRKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQG  245 (432)
T ss_pred             EeCCCC-------cccHHHHHHHHhh---------------hcccceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence            444431       1111112111111               101110   1334577899999998766655       7


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      ++-++++|++|...|+.  +++..++
T Consensus       246 ~~VLlilDslTr~a~A~--reisl~~  269 (432)
T PRK06793        246 NNVLLMMDSVTRFADAR--RSVDIAV  269 (432)
T ss_pred             CcEEEEecchHHHHHHH--HHHHHHh
Confidence            88999999999999984  5555444

>PRK15453 phosphoribulokinase; Provisional

Probab=98.77  E-value=2.8e-08  Score=86.50  Aligned_cols=120  Identities=17%  Similarity=0.145  Sum_probs=73.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcC-ccCCcccChHH-HHHhcCC-
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPKE-AHARRGA-  182 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~-~~l~~~e~~~~-~~~~~g~-  182 (255)
                      +.-+++|+|.+||||||+.+.|+..+..              ......++..|+|+.+. .++........ ...++.. 
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf   69 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF   69 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence            4568999999999999999999987740              11123457888887532 22221100000 0112334 


Q ss_pred             -CCCCcHHHHHHHHHhhcCCCCCCCCCCCc--cc---cchhhhh----hhhccCCcEEEEeCCCCCC
Q 025256          183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GV---GDPVEDD----ILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~--G~---~qrv~~a----~~l~~~~~ililDEp~~~L  239 (255)
                       |++.+.+.+.+.++.++.+.....+.|++  .+   ..+....    ..+..+.+|||+||.+.+.
T Consensus        70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~  136 (290)
T PRK15453         70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV  136 (290)
T ss_pred             CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence             77788888889999888766555555542  11   1111111    1233468999999998875

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.70  E-value=8.7e-08  Score=78.25  Aligned_cols=134  Identities=13%  Similarity=0.067  Sum_probs=73.5

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH--
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--  178 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~--  178 (255)
                      |+++ -.|+.|+|.||+||||||..|+-...-. +..|.. +.        +. +...+       -...+.......  
T Consensus        33 LeF~-apIT~i~GENGsGKSTLLEaiA~~~~~n-~aGg~~n~~--------~~-~~~s~-------s~l~~~~k~~~~~k   94 (233)
T COG3910          33 LEFR-APITFITGENGSGKSTLLEAIAAGMGFN-AAGGGKNFK--------GE-LDASH-------SALVDYAKLHKRKK   94 (233)
T ss_pred             cccc-CceEEEEcCCCccHHHHHHHHHhhcccc-ccCCCcCcC--------cc-ccccc-------chHHHhHHHhhcCC
Confidence            4454 3589999999999999999998776300 111111 00        00 00000       000011111000  


Q ss_pred             -hcCC-CCCCcHHHHHHHHHhhcCCCC---CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          179 -RRGA-PWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       179 -~~g~-~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                       ..|+ ........+...++.+.-..+   ......|+|+.=---+.+.+ ...-++|||||-++|.+.-+.++..++..
T Consensus        95 ~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~  173 (233)
T COG3910          95 PPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRD  173 (233)
T ss_pred             CCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHH
Confidence             0121 122222333334444432222   33457799987655555544 47889999999999999999998888865


Q ss_pred             h
Q 025256          254 K  254 (255)
Q Consensus       254 ~  254 (255)
                      .
T Consensus       174 l  174 (233)
T COG3910         174 L  174 (233)
T ss_pred             H
Confidence            3

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.69  E-value=2.2e-08  Score=100.31  Aligned_cols=63  Identities=13%  Similarity=0.059  Sum_probs=53.9

Q ss_pred             HHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       192 ~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.+..++++   .+..+.+|||||+||+.+|++|+.+|  +++||||||++||+...+.+.++|.+.
T Consensus       468 l~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L  535 (924)
T TIGR00630       468 LGFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL  535 (924)
T ss_pred             HHhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence            3445566665   36678899999999999999998875  899999999999999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.68  E-value=2.2e-08  Score=100.46  Aligned_cols=62  Identities=11%  Similarity=0.037  Sum_probs=54.4

Q ss_pred             HHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.++.++++   .+..+..||+||+||+++|++|..+|  +++||||||++||+...+.+.++|.+.
T Consensus       471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L  537 (943)
T PRK00349        471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL  537 (943)
T ss_pred             HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH
Confidence            456666765   46788899999999999999999886  999999999999999999999998753

>PRK07667 uridine kinase; Provisional

Probab=98.67  E-value=3.9e-08  Score=81.69  Aligned_cols=107  Identities=16%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC--
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--  183 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~--  183 (255)
                      ..-+|||.|++||||||+.+.|...++    ..|         . ...++..|+++....          .+...+..  
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~---------~-~~~~i~~Dd~~~~~~----------~~~~~~~~~~   71 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG---------I-PFHIFHIDDYIVERN----------KRYHTGFEEW   71 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC---------C-cEEEEEcCcccchhh----------hHHhcCCCch
Confidence            346899999999999999999999884    111         1 123478888754221          01111211  


Q ss_pred             -----CCCcHHHHH-HHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256          184 -----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       184 -----~~~~~~~~~-~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~  237 (255)
                           ..++...+. .++..+..+.....|.|+.-.+++..-... +.+++++|+|+|++
T Consensus        72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l  130 (193)
T PRK07667         72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL  130 (193)
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence                 112333332 456667666677788888776655432212 34579999999995

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.63  E-value=1.6e-07  Score=81.03  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .=+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus         9 ~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           9 LFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            335788999999999999999999999999884

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.61  E-value=3e-07  Score=70.13  Aligned_cols=99  Identities=22%  Similarity=0.233  Sum_probs=58.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~  186 (255)
                      +..+.|+||+|+||||+++.|+..+.               ...... +..+......      .. .. . ..      
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---------------~~~~~~-~~~~~~~~~~------~~-~~-~-~~------   50 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG---------------PPGGGV-IYIDGEDILE------EV-LD-Q-LL------   50 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC---------------CCCCCE-EEECCEEccc------cC-HH-H-HH------
Confidence            67899999999999999999999984               221111 3333221100      00 00 0 00      


Q ss_pred             cHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH
Q 025256          187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~  248 (255)
                                  ............+.+..+..++.+-..++++|++||+....+........
T Consensus        51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       51 ------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             ------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence                        11111222334455555555666665567999999999999987665443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK06696 uridine kinase; Validated

Probab=98.55  E-value=9.7e-08  Score=81.05  Aligned_cols=109  Identities=27%  Similarity=0.357  Sum_probs=61.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----  181 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g----  181 (255)
                      ..-+|||.|++|||||||.+.|+..+.    ..|          .....+++|+|+....          .+...+    
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~----------~r~~~~~~~~   76 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV----------IRYRRGRESA   76 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH----------HHHHcCCCCh
Confidence            456999999999999999999999984    111          1223367899875321          111111    


Q ss_pred             --C-CCCCcHHHHHHHHHh-hcCCC--CCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCC
Q 025256          182 --A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF  238 (255)
Q Consensus       182 --~-~~~~~~~~~~~~l~~-l~l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~  238 (255)
                        + ...++...+.+.+-. +.-+.  ....+.++.-...+.......+...+++|+|+|++.
T Consensus        77 ~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~  139 (223)
T PRK06696         77 EGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL  139 (223)
T ss_pred             hhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh
Confidence              1 134455544433332 22221  233334555444433222223346789999999864

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.55  E-value=1.6e-07  Score=83.55  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++.++.|+.++|+||+|||||||++.|++++.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            567899999999999999999999999999983

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK13695 putative NTPase; Provisional

Probab=98.55  E-value=2.7e-08  Score=81.15  Aligned_cols=45  Identities=11%  Similarity=0.003  Sum_probs=35.2

Q ss_pred             CCCCccccchhhhhhhhccCCcEEEEeC--CCCCCChHHHHHHHHHH
Q 025256          207 PSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~~ililDE--p~~~LD~~~~~~l~~ll  251 (255)
                      ..+|++++-+..+.+..+.+|+++|+||  |+..+|+...+.+.+++
T Consensus        77 ~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~  123 (174)
T PRK13695         77 VNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL  123 (174)
T ss_pred             EehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence            3578888888888877778999999999  66677766666666655

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.49  E-value=1.8e-07  Score=62.98  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             cccceecCC-CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~vsl~i~~-Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++..+++.+ |+++.|.|||||||||++..|.-++-
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            456667765 57999999999999999999998883

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.49  E-value=1.2e-07  Score=79.64  Aligned_cols=47  Identities=13%  Similarity=0.116  Sum_probs=37.6

Q ss_pred             CCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          207 PSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..+|.|+++.+.+...+....   .++++|||-++|.|..++.+.++|.+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~  284 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE  284 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence            356999999987776665444   89999999999999999999999864

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.49  E-value=1e-07  Score=78.60  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=34.4

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .-+.+.+++|+.++|+||||||||||++.|+++++   |+.|.
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~   55 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI   55 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            45567789999999999999999999999999995   55554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.48  E-value=6.3e-07  Score=73.32  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=37.1

Q ss_pred             CCCCCCCCccccc------hhhhhhhhccCCcEEEEeCCCCCCC---hHHHHHHHHHHHh
Q 025256          203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~~q------rv~~a~~l~~~~~ililDEp~~~LD---~~~~~~l~~ll~~  253 (255)
                      +..+..+|+|+.+      ......+...+|+++|+|||++.+|   ...+..+.+++..
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~  125 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA  125 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence            3445577888887      4444444567899999999999999   6667777766644

A related protein is found in archaea.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.47  E-value=3.5e-07  Score=78.07  Aligned_cols=119  Identities=14%  Similarity=0.055  Sum_probs=64.5

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHH-HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~-gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g  181 (255)
                      -+++|.++.|.|++|+|||||+..++ +.++               ....+.++..+..        ..+ .......++
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~~--------~~~-~~~~~~~~g   76 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTENT--------SKS-YLKQMESVK   76 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCCC--------HHH-HHHHHHHCC
Confidence            47899999999999999999999874 3332               2334444444321        111 111112333


Q ss_pred             CCCCCcHHHHHHHHHhhcCC-C-CCCCCCCCccccchhhhhhhhcc--CCcEEEEeCCCCCCChHHHHHHHHH
Q 025256          182 APWTFNPLLLLNCLKNLRNQ-G-SVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~l~-~-~~~~~~lS~G~~qrv~~a~~l~~--~~~ililDEp~~~LD~~~~~~l~~l  250 (255)
                      +.    ...... ...+.+. . .......+.++.+.+.....++.  +++++++|||++.+|......+.++
T Consensus        77 ~~----~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~  144 (234)
T PRK06067         77 ID----ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF  144 (234)
T ss_pred             CC----hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence            21    111100 0001110 0 01112345677788877777765  8999999999976554333444443

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.44  E-value=6.7e-07  Score=70.75  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|.||||+||||+++.+++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999984

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.44  E-value=7.1e-07  Score=82.31  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=56.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~  183 (255)
                      +++|++++|+||||+||||+++.|++...   -..         .+..+.++..|.+.+     ...+.........|++
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp  250 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS  250 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence            46899999999999999999999999641   000         123344477777653     3445555566667764


Q ss_pred             CC--CcHHHHHHHHHhhcCCCCCCCCCCCccccchh
Q 025256          184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV  217 (255)
Q Consensus       184 ~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv  217 (255)
                      ..  .+.......+..+.-...+.+..  .|+.+|.
T Consensus       251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd  284 (420)
T PRK14721        251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD  284 (420)
T ss_pred             eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence            32  23333444444443333333333  4777654

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=1.6e-06  Score=78.84  Aligned_cols=38  Identities=26%  Similarity=0.377  Sum_probs=33.4

Q ss_pred             cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.++++.++.+++|.+++|+||||+||||++..|++..
T Consensus       124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            33557777889999999999999999999999999875

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.40  E-value=1.3e-06  Score=72.94  Aligned_cols=24  Identities=46%  Similarity=0.708  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.|+||+||||||+++.|.+.+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            789999999999999999998884

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.40  E-value=4.8e-07  Score=83.75  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=50.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .+.++.+++++.|...   +.+++.++ .+.+|++++|+||||+|||||+++|+++.+   |+.|.
T Consensus       137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv  195 (450)
T PRK06002        137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV  195 (450)
T ss_pred             CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence            4578999999999754   23667775 899999999999999999999999999986   77765

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.38  E-value=3.2e-06  Score=73.27  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=31.4

Q ss_pred             cccccceecCCCe-EEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Ge-iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++..++..++++. ++.|.||+|+|||||++.+...+.
T Consensus        31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            5577777777655 899999999999999999998873

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.32  E-value=4.3e-06  Score=82.02  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=54.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      ++++.++.+++|++++++||||+||||++..|++.+.   ...|         .....++..|.+.+     ...+....
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~Ri-----gA~eQL~~  236 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFRI-----GALEQLRI  236 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccch-----HHHHHHHH
Confidence            4567788888899999999999999999999999873   2222         11223355555432     23344455


Q ss_pred             HHHhcCCCC--CCcHHHHHHHHHhhc
Q 025256          176 AHARRGAPW--TFNPLLLLNCLKNLR  199 (255)
Q Consensus       176 ~~~~~g~~~--~~~~~~~~~~l~~l~  199 (255)
                      .....+++.  ..+...+.+.++.+.
T Consensus       237 ~a~~~gvpv~~~~~~~~l~~al~~~~  262 (767)
T PRK14723        237 YGRILGVPVHAVKDAADLRFALAALG  262 (767)
T ss_pred             HHHhCCCCccccCCHHHHHHHHHHhc
Confidence            555666532  224444555565544

>TIGR00767 rho transcription termination factor Rho

Probab=98.26  E-value=1.1e-06  Score=80.20  Aligned_cols=53  Identities=23%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             eEEEccceeecccccccccccc-----------ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           77 VVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~-----------~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -++++||+..|++.  + ++|.           |+.+.|.+|+.++|+||+|+|||||++.|+..+.
T Consensus       130 ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       130 RVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            58999999999763  2 2565           9999999999999999999999999999999874

Members of this family differ in the specificity of RNA binding.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.26  E-value=6.3e-06  Score=73.71  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=26.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|++++|+||||+||||++..|++.+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5799999999999999999999999985

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.26  E-value=7.2e-06  Score=79.55  Aligned_cols=116  Identities=20%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (255)
                      ....++|+||||+|||||++++.+...   +..|..+     ..... .+.+++..+..   +..   ......++...+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~---~i~~~llg~~~~  238 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPR---EVTNPLLGSVHD  238 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHH---HHhHHhcCCccH
Confidence            345799999999999999999999885   3333200     01122 25555543210   000   000111221110


Q ss_pred             CcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       186 ~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .........++..++.  ....+..+|+|                +|++|| +..||+..+..+.+++++
T Consensus       239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            0011122334444432  22233455555                999999 789999999999999865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.26  E-value=7.7e-07  Score=72.91  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|++++|+|+||||||||+++|++++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            589999999999999999999999984

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.25  E-value=8.1e-07  Score=83.73  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +.|+++.|+...    +++++++.+..|+.++|+||||+|||||++.|.|++.   |.+|+
T Consensus       187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~  240 (506)
T PRK09862        187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE  240 (506)
T ss_pred             ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence            358889998744    6699999999999999999999999999999999997   77776

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.23  E-value=9.1e-07  Score=81.79  Aligned_cols=38  Identities=26%  Similarity=0.357  Sum_probs=35.5

Q ss_pred             cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+++++ |.+.+|++++|+|+||+|||||+++|+|+.+
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            3478999 9999999999999999999999999999885

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.23  E-value=7.9e-07  Score=73.30  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      |++++|+||||||||||+++|++.+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999874

>PRK08233 hypothetical protein; Provisional

Probab=98.22  E-value=7.7e-06  Score=66.54  Aligned_cols=26  Identities=27%  Similarity=0.553  Sum_probs=24.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++.+|+|.|++|||||||++.|+..+
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhC
Confidence            46799999999999999999999987

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=98.21  E-value=2.7e-06  Score=70.26  Aligned_cols=119  Identities=27%  Similarity=0.338  Sum_probs=78.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH--------HHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHAR  179 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~--------~~~~~  179 (255)
                      -++++.||.|||||||.-.|--.+.+  ..-+        ....+. +++|+|++..     .+..+        .....
T Consensus        32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~--------E~s~~~-~SvDDFYLTh-----e~Q~eL~k~npnN~Llq~   95 (282)
T KOG2878|consen   32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ--------EYSSAT-ISVDDFYLTH-----EGQAELRKKNPNNALLQY   95 (282)
T ss_pred             EEEEecCCCCCCceeehhhhHHHHHH--Hhcc--------ccceEE-EEecceeeec-----hhHHHHHhhCCCChhhcc
Confidence            38999999999999998877665531  0001        123454 8999998642     22222        22345


Q ss_pred             cCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCC----ccccchhhhhhhh-ccCCcEEEEeCCCCCCChH
Q 025256          180 RGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFD----HGVGDPVEDDILV-GLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       180 ~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS----~G~~qrv~~a~~l-~~~~~ililDEp~~~LD~~  242 (255)
                      +|.+..++.....++|+.+.-.    ..+.+|.|+    +|...|..-..-. +.+-+++|+|+.+.|..|.
T Consensus        96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl  167 (282)
T KOG2878|consen   96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL  167 (282)
T ss_pred             CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence            7788888888888888866432    346677765    4666776544433 2356899999999986653

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.18  E-value=9.7e-06  Score=69.45  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.+..|+||.|+|||||+-.++--+
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~v   25 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAM   25 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHH
Confidence            6788999999999999999887654

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.17  E-value=1.1e-05  Score=72.99  Aligned_cols=29  Identities=34%  Similarity=0.562  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..++.++.|.||+||||||+++.|.+.+.
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            45688999999999999999999999874

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.16  E-value=2e-06  Score=79.60  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=48.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +.++.+.++..|...   +.+++++ +.+.+|+.++|+|+||+|||||+++|+++..   ++.|.
T Consensus       128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v  185 (433)
T PRK07594        128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV  185 (433)
T ss_pred             CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence            457778888888543   2377999 9999999999999999999999999999986   66654

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.14  E-value=1.9e-06  Score=71.83  Aligned_cols=27  Identities=41%  Similarity=0.614  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|++++|+||+|||||||++.|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999987

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.13  E-value=2.7e-06  Score=76.07  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=36.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +++.+ +.+.+|++++|+|+||+|||||+++|+++..   |+.|.
T Consensus        59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v   99 (326)
T cd01136          59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV   99 (326)
T ss_pred             EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            77999 9999999999999999999999999999986   55443

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.13  E-value=3.1e-05  Score=67.67  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=30.1

Q ss_pred             ccccceecC-------CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           97 TSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~vsl~i~-------~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++++++.++       +|++++++||||+||||++++|++.+.
T Consensus        58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~  100 (270)
T PRK06731         58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH  100 (270)
T ss_pred             hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            466666665       458999999999999999999999874

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.09  E-value=2.4e-06  Score=81.90  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=43.8

Q ss_pred             CCCCCCccccchhhhhhhhc----------cCCcEEEEeCCC-CCCChHHHHHHHHHHHh
Q 025256          205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l~----------~~~~ililDEp~-~~LD~~~~~~l~~ll~~  253 (255)
                      .+..||+||+||+++|++++          .+|+++|+|||| ++||+..+..+.++|.+
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~  524 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS  524 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence            34689999999999998887          589999999998 78999999999998875

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.09  E-value=1.8e-05  Score=60.77  Aligned_cols=26  Identities=38%  Similarity=0.640  Sum_probs=24.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+..+.|.||+|+|||||++.++..+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK08149 ATP synthase SpaL; Validated

Probab=98.09  E-value=3.1e-06  Score=78.16  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=34.6

Q ss_pred             ccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        95 ~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~  176 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE  176 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence            377999 9999999999999999999999999999875

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.08  E-value=3.4e-06  Score=78.39  Aligned_cols=36  Identities=31%  Similarity=0.416  Sum_probs=34.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|+++..
T Consensus       148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~  183 (438)
T PRK07721        148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS  183 (438)
T ss_pred             hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence            67999 9999999999999999999999999999985

>PRK06547 hypothetical protein; Provisional

Probab=98.07  E-value=1.7e-05  Score=64.70  Aligned_cols=27  Identities=33%  Similarity=0.425  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..-.+|+|.|++|||||||.+.|+..+
T Consensus        13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         13 GGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            445689999999999999999999876

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.07  E-value=3.2e-06  Score=68.99  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      |++++|+||||||||||++.|++++.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999873

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.04  E-value=3e-06  Score=69.09  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |++++|+||||||||||++.|++.+
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            7899999999999999999999976

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.04  E-value=3.9e-06  Score=86.02  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             CCCCCCCCCCccccchhhhhhhhcc--------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          201 QGSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       201 ~~~~~~~~lS~G~~qrv~~a~~l~~--------~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +....+..|||||+++++++++|+.        +|++||+||||.+||+.....++++|...
T Consensus       942 ~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l 1003 (1047)
T PRK10246        942 DAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL 1003 (1047)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            3456778999999999999999985        89999999999999999999999988653

>TIGR00618 sbcc exonuclease SbcC

Probab=98.04  E-value=4.3e-06  Score=85.83  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=46.5

Q ss_pred             CCCCCCCCCccccchhhhhhhhcc----------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ~~~~~~~lS~G~~qrv~~a~~l~~----------~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ....+..|||||++|+++|++|+.          +|++||+||||++||+.....++++|...
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l 1006 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            445678999999999999999975          79999999999999999999999988653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.03  E-value=7.7e-06  Score=82.11  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=29.6

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -+|+.+. ..+.++.|.|||.+||||+||.++...
T Consensus       598 pnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~  631 (854)
T PRK05399        598 PNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIV  631 (854)
T ss_pred             ecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHH
Confidence            3788887 668899999999999999999988764

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.00  E-value=6.4e-06  Score=76.45  Aligned_cols=43  Identities=23%  Similarity=0.296  Sum_probs=37.9

Q ss_pred             cccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        94 i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +.+++++ +.+.+|++++|+|+||+|||||+++|+++..   ++.|.
T Consensus       151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~v  193 (441)
T PRK09099        151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNV  193 (441)
T ss_pred             ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEE
Confidence            3477999 9999999999999999999999999999985   55554

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.99  E-value=6.6e-06  Score=76.25  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|+++..   |+.|.
T Consensus       135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v  175 (422)
T TIGR02546       135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNV  175 (422)
T ss_pred             eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            77999 9999999999999999999999999999986   66554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
3c8u_A	208	Crystal Structure Of Putative Fructose Transport Sy		4e-12
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		2e-10

>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           + +V L+G PG+GKSTL+  +           A++  +Q  P   A V+P DGFHL    
Sbjct: 22  RQLVALSGAPGSGKSTLSNPL-----------AAALSAQGLP---AEVVPXDGFHLD--- 64
Query: 167 LDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQ 226
            + + +P+    R+GAP TF              Q  V  P FD      +     VG +
Sbjct: 65  -NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFD 252
            +V I++GNYL  D   W+D+++++D
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWD 149

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF                       
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	5e-48
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	1e-43
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	4e-07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	8e-27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	8e-27
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	1e-17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	2e-12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	2e-11
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	2e-10
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	2e-09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	5e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	5e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	6e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	9e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	3e-04

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score =  157 bits (398), Expect = 5e-48
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++             
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52

Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
                 A V+PMDGFHL    L+    P+    R+GAP TF+          L++Q  V 
Sbjct: 53  ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102

Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            P FD      +     VG + +V I++GNYL  D   W+D+++++D   
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSI 152

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score =  150 bits (380), Expect = 1e-43
 Identities = 50/242 (20%), Positives = 82/242 (33%), Gaps = 40/242 (16%)

Query: 43  RRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
             N +    +    G   +   A V   +N     + S         ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166

Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
               LD  +DP+ AH RRG+P TF+    L   K L                        
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226

Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
                     ++ P F+H + DP  D   +    ++VI++G YL  D   WK +     +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286

Query: 254 KW 255
             
Sbjct: 287 TG 288

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   + +
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
           +        V  +D    L  +++  M +
Sbjct: 64  EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score =  109 bits (274), Expect = 1e-28
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 26/179 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     ++  DGF      L      +    ++G P +++   L+  + +L++   
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKW 255
           +V AP + H + D + D     +Q  ++I++G  +               VS   D   
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 219

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score =  104 bits (261), Expect = 8e-27
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
              L       +  V  I+G+AG    GKST A  +   + +                  
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122

Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
             ++  DGF    ++L      +    R+G P ++N   L+  + ++++      AP + 
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178

Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           H   D +     V     ++I++G  +   G     VS +FD   
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFSL 222

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score =  105 bits (262), Expect = 8e-27
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     V+  DGF    ++L+     +    R+G P +++   LL  L  +++ Q 
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKW 255
           +V  P + H   D V     +  Q  +VI++G  +   G       +   VS  FD   
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSL 231

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 77.8 bits (192), Expect = 1e-17
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 33/175 (18%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR 199
                      V  MD   +  ++      E+  E +        ++   L     + L+
Sbjct: 53  ---------VCVFHMDDHIVERAKRYHTGNEEWFEYY-----YLQWDVEWLTHQLFRQLK 98

Query: 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               +  P +DH      +  + +     +++++G +L       K+    FD  
Sbjct: 99  ASHQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFV 147

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 19/148 (12%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKST+  +++  + +   +         +      +L  D F+  L+   
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75

Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             +  K    +     P  F+  L+   LKN+    +V  P++D      + +  +V   
Sbjct: 76  -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             VV+ +G  +F      +++  MF  +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLR 157

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +         +          +L  D F+  L+   
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
                 +       P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 75  -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VV+ +G   F      ++V  +F  K
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMK 154

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G++G   +GK+TLA    + + K  P                +V+  D F    S++ 
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E  K    +       N   +++ +            S D    +             
Sbjct: 64  --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++I++G  LF      K + ++++  
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRS 133

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 35/151 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G+AG   +GK+TLA    + +       A +   +V       +LPMD ++  L  L 
Sbjct: 8   VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50

Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
                      R       P  F+  L L   + L     V  P +D            V
Sbjct: 51  --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102

Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                VVI++G  +       K++  + D K
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLK 128

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.5 bits (143), Expect = 2e-10
 Identities = 46/280 (16%), Positives = 77/280 (27%), Gaps = 77/280 (27%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPV--FGKTRSL 58
            D   +   P++ LS    +              G L   W   +   + V  F +   L
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87

Query: 59  VQN----KTSLKVLCSQQREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
             N     + +K    Q   +  +     D +Y      A+    RL P   L      +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
                V + G  G+GK+ +A +V             S+  Q K            F ++ 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL-----------SYKVQCKMD----------FKIF- 185

Query: 165 SQLDAMEDPKEAHARRGAPW-TFN----PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE 218
                              W        P  +L  L+ L  Q    +    DH     + 
Sbjct: 186 -------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 219 -DDILVGLQHKVVIVDGNY----LFLDGGVW-KDVSSMFD 252
              I   L+   ++    Y    L L   V      + F+
Sbjct: 227 IHSIQAELRR--LLKSKPYENCLLVLL-NVQNAKAWNAFN 263

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 25/165 (15%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST    V    ++I+ ++             A  +  D FH + 
Sbjct: 3   KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48

Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
            + + A  D + A         +        L    +     G     ++ H   +    
Sbjct: 49  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108

Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  G             ++  +G +  +      +++ + D K 
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKI 152

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 55.8 bits (133), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
            +  +GP G+GKS  + ++   + + +  + S                +D F+L      
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81

Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 219
            + +  + +     RG P T +  LL   L  + N      Q +V  P +D        D
Sbjct: 82  KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.98
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.98
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.97
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.95
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.95
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.95
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.94
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.94
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.92
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.92
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.9
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.86
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.85
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.82
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.82
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.81
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.81
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.81
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.79
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.79
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.74
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.7
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.69
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.66
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.66
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.66
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.65
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.64
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.63
2og2_A	359	Putative signal recognition particle receptor; nuc	99.61
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.6
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.57
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.57
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.56
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.55
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.55
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.54
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.54
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.54
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.53
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.51
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.51
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.5
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.5
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.49
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.47
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.47
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.47
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.45
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.45
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.42
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.39
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.38
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.38
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.35
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.32
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.32
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.31
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.29
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.27
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.26
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.23
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.2
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.19
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.17
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.17
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.14
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.13
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.12
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.11
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.11
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.1
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.09
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.09
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.04
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.98
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.97
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.96
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.94
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.92
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.88
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.88
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.85
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.85
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.84
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.79
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.79
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.77
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.77
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.73
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.73
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.72
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.71
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.7
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.7
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.7
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.69
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.69
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.61
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.6
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.59
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.58
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.56
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.54
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.51
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.46
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.46
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.45
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.41
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.38
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.36
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.35
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.35
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.35
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.33
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.32
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.32
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.32
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.31
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.29
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.28
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.27
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.26
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.23
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.22
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.2
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.18
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.16
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.15
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.08
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.07
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.07
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.06
3ice_A	422	Transcription termination factor RHO; transcriptio	98.04
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.02
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.0
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.99
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.97
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.91
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.9
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.9
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.85
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.85
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.85
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.84
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.84
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.84
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.82
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.81
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.8
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.78
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.78
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.77
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.74
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.72
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.72
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.7
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.69
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.68
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.64
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.63
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.62
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.6
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.59
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.57
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.55
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.54
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.54
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.53
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.53
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.51
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.49
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.48
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.48
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.46
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.46
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.45
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.45
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.41
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.41
1via_A	175	Shikimate kinase; structural genomics, transferase	97.4
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.4
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.39
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.39
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.39
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.38
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.37
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.35
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.34
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.33
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.33
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.32
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.31
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.31
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.3
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.28
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.28
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.28
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.26
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.25
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.25
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.24
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.23
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.23
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.21
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.2
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.19
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.18
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.16
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.15
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.1
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.09
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.08
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.06
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.06
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.05
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.05
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.04
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.04
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.04
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.04
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.03
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.0
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.0
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.99
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.97
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.96
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.93
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.93
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.92
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.87
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.87
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.86
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.83
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.81
3bos_A	242	Putative DNA replication factor; P-loop containing	96.8
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.8
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.75
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.75
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.75
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.73
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.72
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.72
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.71
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.69
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.69
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.67
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.66
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.66
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.66
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.65
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.65
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.64
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.64
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.64
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.63
2xxa_A	433	Signal recognition particle protein; protein trans	96.63
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.63
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.62
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.62
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.61
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.61
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.6
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.58
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.58
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.58
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.57
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.57
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.55
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.55
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.54
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.54
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.53
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.53
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.51
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.5
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.5
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.49
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.49
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.48
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.47
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.47
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.47
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.47
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.46
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.46
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.46
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.45
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.45
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.45
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.45
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.44
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.43
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.43
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.43
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.43
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.42
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.42
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.41
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.4
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.39
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.39
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.38
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.38
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.37
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.36
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.36
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.36
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.35
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.35
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.34
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.33
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.33
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.32
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.32
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.32
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.3
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.29
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.29
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.28
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.27
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.26
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.25
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.25
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.25
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.25
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.23
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.23
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.23
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.21
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.21
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.21
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.2
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.19
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.19
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.17
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.17
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.17
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.16
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.15
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.14
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.13
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.12
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.12
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.11
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.11
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.09
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.07
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.07
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.05
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.04
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.03
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.02
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.02
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.02
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.99
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.98
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.97
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.96
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.95
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.95
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.95
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.94
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.92
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.92
3pvs_A	447	Replication-associated recombination protein A; ma	95.92
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.9
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.87
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.87
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.87
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.86
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.86
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.85
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.83
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.82
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.82
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.76
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.74
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.71
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.7
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.7
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.68
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.67
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.66
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.66
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.65
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.62
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.62
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.61
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.61
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.6
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.58
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.56
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.56
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.53
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.5
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.49
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.46
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.44
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.43
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.36
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.35
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.35
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.32
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.3
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.3
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.3
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.28
2qgz_A	308	Helicase loader, putative primosome component; str	95.27
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.25
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.22
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.2
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.2
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.19
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.16
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	95.14
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.12

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=7.2e-37  Score=274.76  Aligned_cols=175  Identities=17%  Similarity=0.149  Sum_probs=142.0

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .+++|+++||+|.|+.....+.+|++|||+|++|+++||+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence            34689999999999753233447899999999999999999999999999999999998   99999 4666432     


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                            +...|. ++++....  ..+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||||||++
T Consensus        98 ~~~~~~r~~Ig~-v~Q~~~l~--~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI  174 (366)
T 3tui_C           98 SELTKARRQIGM-IFQHFNLL--SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI  174 (366)
T ss_dssp             HHHHHHHTTEEE-ECSSCCCC--TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEE-EeCCCccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence                  124555 66664322  2378888888776666654444455678899998886  567888999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+.+|++||+||||++||+..+++++++|.+.
T Consensus       175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l  209 (366)
T 3tui_C          175 ARALASNPKVLLCDQATSALDPATTRSILELLKDI  209 (366)
T ss_dssp             HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=8.1e-37  Score=258.56  Aligned_cols=169  Identities=17%  Similarity=0.104  Sum_probs=134.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++++++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus         2 ~~~l~~~~l~~~y~~~~----~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (224)
T 2pcj_A            2 AEILRAENIKKVIRGYE----ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK   74 (224)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred             CcEEEEEeEEEEECCEe----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence            35799999999998643    7799999999999999999999999999999999998   99999 46653321     


Q ss_pred             -------CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 -------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                             ...+. ++++....  ..+++.++..+.....+.+.......+.++++.+++.  .+.++.+||+||+||+++
T Consensus        75 ~~~~~~~~~i~~-v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           75 ELSLLRNRKLGF-VFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             HHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEE-EecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence                   12344 56554322  2367888877654444432222334567888988876  456677999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+.+|++||+||||++||+..++.+.++|.+
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  185 (224)
T 2pcj_A          152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLK  185 (224)
T ss_dssp             HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.7e-36  Score=273.82  Aligned_cols=170  Identities=14%  Similarity=0.115  Sum_probs=140.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++|+++||+|.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~   73 (381)
T 3rlf_A            1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA   73 (381)
T ss_dssp             -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred             CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence            45799999999998754    7899999999999999999999999999999999998   99999 4666422      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ +.+++.+|+.+.....+.+.......+.++++.+++.  .+.++.+|||||||||++||||+.
T Consensus        74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~  150 (381)
T 3rlf_A           74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (381)
T ss_dssp             GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence            123454 666543 22 3478999988877666655444456678899998886  567788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++||+||||++||+..+++++++|.+.
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l  179 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDAALRVQMRIEISRL  179 (381)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.2e-36  Score=273.11  Aligned_cols=168  Identities=11%  Similarity=0.160  Sum_probs=135.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||+|.|++..    +|+++||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~   75 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL   75 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            3799999999998754    7899999999999999999999999999999999998   99999 4665321       


Q ss_pred             ---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++.  .+.++.+|||||||||++|||
T Consensus        76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA  152 (359)
T 3fvq_A           76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA  152 (359)
T ss_dssp             CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence               123555 666543 22 3478888776644333433333445678899998886  567788999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+..++++++.+.+
T Consensus       153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          153 LAPDPELILLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999876543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=2.9e-36  Score=256.88  Aligned_cols=171  Identities=15%  Similarity=0.162  Sum_probs=132.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +|+++||++.|++......+|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence            48899999999853222337899999999999999999999999999999999998   99999 46663221       


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHHHhc---CCCCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~---g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv  217 (255)
                           ...|. ++++....  ..+++.++..+.....   +.........+.++++.+++..   +.++.+|||||+||+
T Consensus        78 ~~~~~~~i~~-v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv  154 (235)
T 3tif_A           78 TKIRRDKIGF-VFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (235)
T ss_dssp             HHHHHHHEEE-ECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             HHHhhccEEE-EecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence                 12454 66665322  2367888776644322   1121222345677888888753   567889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||+.+|++||+||||++||+..++++.+++.+
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~  190 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKK  190 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=2.8e-36  Score=260.00  Aligned_cols=171  Identities=13%  Similarity=0.093  Sum_probs=134.9

Q ss_pred             CccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---
Q 025256           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---  148 (255)
Q Consensus        73 ~~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---  148 (255)
                      ..|++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....   
T Consensus        11 ~~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~   83 (256)
T 1vpl_A           11 HHMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP   83 (256)
T ss_dssp             ---CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred             ccCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence            3588999999999998643    7799999999999999999999999999999999998   99999 46653221   


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...|. ++++....  ..+++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|+|
T Consensus        84 ~~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  160 (256)
T 1vpl_A           84 HEVRKLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA  160 (256)
T ss_dssp             HHHHTTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred             HHHhhcEEE-EcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence                23454 66654322  2368888877654444432211234567888888876  356778999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+..++.+.++|.+
T Consensus       161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.3e-36  Score=263.06  Aligned_cols=169  Identities=17%  Similarity=0.152  Sum_probs=136.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++||++.|++.. .  +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus         6 ~~l~i~~ls~~y~~~~-~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~   79 (275)
T 3gfo_A            6 YILKVEELNYNYSDGT-H--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI   79 (275)
T ss_dssp             EEEEEEEEEEECTTSC-E--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred             cEEEEEEEEEEECCCC-e--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence            4799999999997521 1  6799999999999999999999999999999999998   99999 46664321      


Q ss_pred             ----CCeeEEEecCCC-CCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhh
Q 025256          149 ----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 ----~~~g~~i~~d~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~  221 (255)
                          ...|. ++++.. .++  .+++.++..+.....+.+.......+.++++.+++.  .+.++..|||||+||+++|+
T Consensus        80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr  156 (275)
T 3gfo_A           80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  156 (275)
T ss_dssp             HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence                23454 666542 222  268888887766555544333345677889988886  46677899999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+.+|++||+||||++||+..++++.++|.+
T Consensus       157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~  188 (275)
T 3gfo_A          157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE  188 (275)
T ss_dssp             HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.5e-36  Score=261.21  Aligned_cols=169  Identities=15%  Similarity=0.191  Sum_probs=133.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus        22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~   94 (263)
T 2olj_A           22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN   94 (263)
T ss_dssp             CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred             hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence            34799999999998643    7799999999999999999999999999999999998   99999 46663221     


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                           ...+. ++++...  ...+++.++..+.. ...+.........+.++++.+++.  .+.++.+|||||+||+++|
T Consensus        95 ~~~~~~~i~~-v~Q~~~l--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A           95 LNKVREEVGM-VFQRFNL--FPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             HHHHHHHEEE-ECSSCCC--CTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHhCcEEE-EeCCCcC--CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence                 12344 6665432  22367888776643 223332222234567888888875  4567779999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+.+|++||+||||++||+..++++.++|.+
T Consensus       172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  204 (263)
T 2olj_A          172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ  204 (263)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=8.7e-36  Score=257.19  Aligned_cols=169  Identities=14%  Similarity=0.126  Sum_probs=131.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++++++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus         5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            46799999999998744    7799999999999999999999999999999999998   99999 46653321     


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHh--cC-----------CCCCCcHHHHHHHHHhhcCC--CCCCCCCC
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF  209 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~l~--~~~~~~~l  209 (255)
                          ...+. ++++....  ..+++.++..+....  .+           .........+.++++.+++.  .+.++..|
T Consensus        78 ~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  154 (257)
T 1g6h_A           78 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  154 (257)
T ss_dssp             HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHhCCEEE-EccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence                12343 55554322  236777766543211  12           11111234567888888875  46677899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+||+++|+||+.+|++||+||||++||+..++++.++|.+
T Consensus       155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  198 (257)
T 1g6h_A          155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE  198 (257)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.5e-35  Score=266.67  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=137.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++..    +|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (362)
T 2it1_A            1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK   73 (362)
T ss_dssp             CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence            34699999999998644    7799999999999999999999999999999999998   99999 4665322      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++||||+.
T Consensus        74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  150 (362)
T 2it1_A           74 DRNVGL-VFQNWA-LY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK  150 (362)
T ss_dssp             GTTEEE-ECTTCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             HCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence            123454 666543 22 3478889888766555544333345678889999886  456778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+++++++|.+
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (362)
T 2it1_A          151 EPEVLLLDEPLSNLDALLRLEVRAELKR  178 (362)
T ss_dssp             CCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=1e-35  Score=267.47  Aligned_cols=169  Identities=16%  Similarity=0.171  Sum_probs=134.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+++++||+|.|++..    +|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (359)
T 2yyz_A            1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK   73 (359)
T ss_dssp             -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence            44699999999998644    7799999999999999999999999999999999998   99999 4666322      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ +.+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++||||+.
T Consensus        74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~  150 (359)
T 2yyz_A           74 YREVGM-VFQNYA-LY-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK  150 (359)
T ss_dssp             GTTEEE-ECSSCC-CC-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            123554 666543 22 3478888776643222322222234677889988886  467778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+++++++|.+
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A          151 QPKVLLFDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.4e-35  Score=256.61  Aligned_cols=168  Identities=14%  Similarity=0.138  Sum_probs=132.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus         5 ~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD   77 (262)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred             ceEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence            3699999999998643    7799999999999999999999999999999999998   99999 46653321      


Q ss_pred             ---------------CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCC
Q 025256          149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF  209 (255)
Q Consensus       149 ---------------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~l  209 (255)
                                     ...|. ++++...  ...+++.++..+.. ...+.........+.++++.+++.   .+.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~l--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L  154 (262)
T 1b0u_A           78 GQLKVADKNQLRLLRTRLTM-VFQHFNL--WSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL  154 (262)
T ss_dssp             SSEEESCHHHHHHHHHHEEE-ECSSCCC--CTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             ccccccChhhHHHHhcceEE-EecCccc--CCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence                           12344 6665432  23368888877643 223332222234567888988885   35677899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||+||+++|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus       155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  198 (262)
T 1b0u_A          155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ  198 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=2.7e-35  Score=247.44  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=133.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCe
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~  151 (255)
                      .+|+++||++.|++ .    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++...   ....
T Consensus         9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI   80 (214)
T ss_dssp             CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred             ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence            57999999999976 4    7899999999999999999999999999999999998   99999 4555321   2234


Q ss_pred             eEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEE
Q 025256          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       152 g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~il  230 (255)
                      +. +.++....  ..+++.++..+.....+. . .....+.++++.+++.. +.++..||+||+||+++|++|+.+|++|
T Consensus        81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~-~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll  155 (214)
T 1sgw_A           81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-K-VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY  155 (214)
T ss_dssp             EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-C-CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-c-hHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            44 56654332  236788877765443343 2 23566788899888764 5667799999999999999999999999


Q ss_pred             EEeCCCCCCChHHHHHHHHHHHh
Q 025256          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 ilDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+..++.+.++|.+
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~  178 (214)
T 1sgw_A          156 VLDDPVVAIDEDSKHKVLKSILE  178 (214)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHH
T ss_pred             EEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999865

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.1e-35  Score=264.92  Aligned_cols=169  Identities=14%  Similarity=0.228  Sum_probs=137.6

Q ss_pred             cceEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----
Q 025256           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .++|+++||+|.| ++..    +|+++||+|++|++++|+||||||||||||+|+|+++   |++|+ .+++...     
T Consensus        12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~   84 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP   84 (355)
T ss_dssp             CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred             CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence            4579999999999 7643    7799999999999999999999999999999999998   99999 4665322     


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                       ....|. ++++.. + .+.+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++|+||+
T Consensus        85 ~~r~ig~-v~Q~~~-l-~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~  161 (355)
T 1z47_A           85 QKRNVGL-VFQNYA-L-FQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA  161 (355)
T ss_dssp             GGSSEEE-ECGGGC-C-CTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             hhCcEEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence             123454 666543 2 23478889888766555543333345678889998886  46778899999999999999999


Q ss_pred             cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++|||||||++||+..+++++++|.+
T Consensus       162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  190 (355)
T 1z47_A          162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQ  190 (355)
T ss_dssp             TCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=2.8e-35  Score=255.16  Aligned_cols=167  Identities=14%  Similarity=0.107  Sum_probs=132.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~----  149 (255)
                      +++++++||++.|++..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++|.....    
T Consensus         9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~   81 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK   81 (266)
T ss_dssp             CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred             cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence            46899999999998754    7899999999999999999999999999999999998   99999 466643211    


Q ss_pred             ----CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhh
Q 025256          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 ----~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                          ..+. +.++....+  .+++.++..+.....  ........+.++++.+++.  .+.++..|||||+||+++|+||
T Consensus        82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL  156 (266)
T 4g1u_C           82 ALARTRAV-MRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL  156 (266)
T ss_dssp             HHHHHEEE-ECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhheEEE-EecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence                1343 555543322  256666655432211  2233455678889988876  4566779999999999999999


Q ss_pred             cc------CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~------~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +.      +|++||+||||++||+..+.++.++|.+
T Consensus       157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~  192 (266)
T 4g1u_C          157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ  192 (266)
T ss_dssp             HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99      9999999999999999999999999865

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.7e-35  Score=267.43  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=137.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC-------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------  146 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~-------  146 (255)
                      |.+|+++||+|.|++..    +|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++..       
T Consensus         1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   73 (372)
T 1g29_1            1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (372)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence            45799999999998644    7799999999999999999999999999999999998   99999 465532       


Q ss_pred             --C---CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       147 --~---~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                        .   ....|. ++++.. ++ +.+++.+|..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++
T Consensus        74 ~~~~~~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  150 (372)
T 1g29_1           74 IFVPPKDRDIAM-VFQSYA-LY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (372)
T ss_dssp             EECCGGGSSEEE-ECSCCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             ccCCHhHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence              1   123454 666543 22 3478889888766555544333345677889988886  467778999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+.+|++|||||||++||+..+++++++|.+
T Consensus       151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.9e-35  Score=266.86  Aligned_cols=169  Identities=12%  Similarity=0.141  Sum_probs=131.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++..    +|+++||+|++|++++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A            9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence            55799999999998644    7799999999999999999999999999999999998   99999 4666322      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ +.+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++||||+.
T Consensus        82 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  158 (372)
T 1v43_A           82 DRNISM-VFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  158 (372)
T ss_dssp             GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            123454 666543 22 3478877776532222222222234567889988886  567788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+++++++|.+
T Consensus       159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=5.8e-35  Score=249.59  Aligned_cols=167  Identities=17%  Similarity=0.130  Sum_probs=129.3

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++++++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus         5 ~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             ceEEEEeEEEEECCee----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence            4799999999998743    7799999999999999999999999999999999998   99999 46663221      


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc-CC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                         ...+. ++++....  ..+++.++..+.. ............+.++++.++ +.  .+.++..||+||+||+++|+|
T Consensus        78 ~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra  153 (240)
T 1ji0_A           78 INRMGIAL-VPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             HHHTTEEE-ECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred             HHhCCEEE-EecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence               12454 66654322  2367777665532 111122222344567777774 53  466788999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+..++.+.++|.+
T Consensus       154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~  184 (240)
T 1ji0_A          154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=3.6e-35  Score=256.08  Aligned_cols=170  Identities=12%  Similarity=0.006  Sum_probs=128.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++||++.|++..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus        20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~   92 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA   92 (279)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred             ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence            4799999999998643    7799999999999999999999999999999999998   99999 46654321      


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (255)
                          ...+. +.++........+++.++..+....    ++.+.......+.++++.+++.  .+.++.+||+||+||++
T Consensus        93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~  171 (279)
T 2ihy_A           93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM  171 (279)
T ss_dssp             HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                22444 5554322122224666665432110    1111111234567788888875  45677899999999999


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus       172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~  206 (279)
T 2ihy_A          172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS  206 (279)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=3.4e-35  Score=263.81  Aligned_cols=171  Identities=14%  Similarity=0.165  Sum_probs=134.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++  ....+|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   75 (353)
T 1oxx_K            1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (353)
T ss_dssp             CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence            457999999999976  22115699999999999999999999999999999999998   99999 4655321      


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                           ....|. ++++... + +.+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++|
T Consensus        76 ~~~~~~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA  152 (353)
T 1oxx_K           76 IVPPEDRKIGM-VFQTWAL-Y-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (353)
T ss_dssp             SSCGGGSCEEE-EETTSCC-C-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cCChhhCCEEE-EeCCCcc-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence                 123454 6665432 2 3478888776643333333222235577889988886  4677789999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+.+|++|||||||++||+..+++++++|.+
T Consensus       153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  185 (353)
T 1oxx_K          153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (353)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998865

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=1.5e-34  Score=248.85  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=129.1

Q ss_pred             ceEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|+ +..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|++..    ....+. 
T Consensus         3 ~~l~i~~l~~~y~~~~~----vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~-   70 (253)
T 2nq2_C            3 KALSVENLGFYYQAENF----LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF-   70 (253)
T ss_dssp             EEEEEEEEEEEETTTTE----EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred             ceEEEeeEEEEeCCCCe----EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence            3799999999998 533    6799999999999999999999999999999999997   99998541    234454 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhc-CC---CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      ++++.....  .+++.++..+..... +.   ........+.++++.+++.  .+.++..||+||+||+++|+||+.+|+
T Consensus        71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  148 (253)
T 2nq2_C           71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK  148 (253)
T ss_dssp             ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred             EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            666543322  357777665532211 21   1112234567888888876  456778999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+..++.+.++|.+
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~  173 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLID  173 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=2e-34  Score=249.81  Aligned_cols=171  Identities=15%  Similarity=0.108  Sum_probs=131.2

Q ss_pred             eEEEccceeecc-ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CC
Q 025256           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~-~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~  149 (255)
                      +++++||++.|+ +......+|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++...     +.
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence            589999999997 21000126799999999999999999999999999999999998   99999 4665322     12


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC----CCCCCCCCCccccchhhhhhhhcc
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ..|. +.++..... ..+++.++..+..... .........+.++++.+++.    .+.++..||+||+||+++|++|+.
T Consensus        79 ~i~~-v~q~~~~~~-~~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~  155 (266)
T 2yz2_A           79 NIGI-AFQYPEDQF-FAERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVH  155 (266)
T ss_dssp             GEEE-ECSSGGGGC-CCSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             hEEE-Eeccchhhc-CCCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHc
Confidence            3454 666531111 1257777665532222 22333456678899999886    466778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++||+||||++||+..++.+.++|.+
T Consensus       156 ~p~lllLDEPts~LD~~~~~~l~~~l~~  183 (266)
T 2yz2_A          156 EPDILILDEPLVGLDREGKTDLLRIVEK  183 (266)
T ss_dssp             CCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=5.3e-34  Score=255.44  Aligned_cols=163  Identities=14%  Similarity=0.163  Sum_probs=134.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------~  149 (255)
                      |++++||+|.|++  .   +|+++||++++|++++|+||||||||||||+|+|+++   |++|+ .+++....      .
T Consensus         1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r   72 (348)
T 3d31_A            1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (348)
T ss_dssp             CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence            4789999999975  2   5699999999999999999999999999999999998   99999 46664321      1


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..|. ++++.. + .+.+++.+|..+.....+.+..   ..+.++++.+++.  .+.++.+|||||+||+++||||+.+|
T Consensus        73 ~ig~-v~Q~~~-l-~~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P  146 (348)
T 3d31_A           73 DIAF-VYQNYS-L-FPHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (348)
T ss_dssp             TCEE-ECTTCC-C-CTTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             cEEE-EecCcc-c-CCCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3455 666543 2 2347888988876655444332   6678899999886  46677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|||||||++||+..+++++++|.+
T Consensus       147 ~lLLLDEP~s~LD~~~~~~l~~~l~~  172 (348)
T 3d31_A          147 KILLLDEPLSALDPRTQENAREMLSV  172 (348)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=2.5e-34  Score=247.04  Aligned_cols=170  Identities=18%  Similarity=0.070  Sum_probs=123.6

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCcc-ccCCCCCCC--
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKPP--  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~-~~~~~~~~~--  149 (255)
                      |++++++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+  ++   |++|+ .+++.....  
T Consensus         1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~   73 (250)
T 2d2e_A            1 MSQLEIRDLWASIDGET----ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS   73 (250)
T ss_dssp             -CEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred             CceEEEEeEEEEECCEE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence            45799999999998643    77999999999999999999999999999999998  66   89999 466532211  


Q ss_pred             -------CeeEEEecCCCCCcCccCCcccChHHHHHh-cCCCC--CCcHHHHHHHHHhhcCC---CCCCCCC-CCccccc
Q 025256          150 -------DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD  215 (255)
Q Consensus       150 -------~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~-~g~~~--~~~~~~~~~~l~~l~l~---~~~~~~~-lS~G~~q  215 (255)
                             ..+. ++++....  ..+++.++..+.... .+...  ......+.++++.+++.   .+.++.. ||+||+|
T Consensus        74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ  150 (250)
T 2d2e_A           74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK  150 (250)
T ss_dssp             HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred             HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence                   1222 44443321  235666766553321 22111  11134567788888883   3566777 9999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus       151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  189 (250)
T 2d2e_A          151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM  189 (250)
T ss_dssp             HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.6e-34  Score=245.51  Aligned_cols=162  Identities=11%  Similarity=0.058  Sum_probs=124.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      |++++||++.|++      +|+++||++++ ++++|+||||||||||+|+|+|+++   |++|+ .+++...      ..
T Consensus         1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   70 (240)
T 2onk_A            1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence            3789999999974      47999999999 9999999999999999999999997   99999 4555321      12


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..|. ++++...  ...+++.++..+.....+.  ......+.++++.+++.  .+.++..|||||+||+++|+|++.+|
T Consensus        71 ~i~~-v~q~~~l--~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  145 (240)
T 2onk_A           71 GIGF-VPQDYAL--FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP  145 (240)
T ss_dssp             CCBC-CCSSCCC--CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cEEE-EcCCCcc--CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3444 4554322  1235666655432111110  01234567888888876  45667799999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+||||++||+..++.+.+++.+
T Consensus       146 ~lllLDEPts~LD~~~~~~~~~~l~~  171 (240)
T 2onk_A          146 RLLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=1.7e-33  Score=244.16  Aligned_cols=170  Identities=16%  Similarity=0.092  Sum_probs=126.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCcc-ccCCCCCC---
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP---  148 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll--~~~~p~~G~-~~~~~~~~---  148 (255)
                      +++++++||++.|++..    +|+++||+|++|++++|+||||||||||+|+|+|++  +   |++|+ .+++....   
T Consensus        18 ~~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~   90 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDKA----ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS   90 (267)
T ss_dssp             --CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred             CceEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence            45799999999997643    779999999999999999999999999999999984  4   88999 46653211   


Q ss_pred             ------CCeeEEEecCCCCCcCccCCcccChHHHHHh----cCCCC---CCcHHHHHHHHHhhcCC---CCCCCC-CCCc
Q 025256          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH  211 (255)
Q Consensus       149 ------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~----~g~~~---~~~~~~~~~~l~~l~l~---~~~~~~-~lS~  211 (255)
                            ...+. +.++....  ..+++.++.......    .+...   ......+.++++.+++.   .+.++. .||+
T Consensus        91 ~~~~~~~~i~~-v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg  167 (267)
T 2zu0_C           91 PEDRAGEGIFM-AFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG  167 (267)
T ss_dssp             HHHHHHHTEEE-ECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred             HHHHhhCCEEE-EccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence                  01333 55554322  235666655443211    22211   11123567888888884   244555 4999


Q ss_pred             cccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus       168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l  210 (267)
T 2zu0_C          168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL  210 (267)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.98  E-value=7.2e-33  Score=239.56  Aligned_cols=165  Identities=16%  Similarity=0.133  Sum_probs=129.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-----CCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-----~~~  150 (255)
                      |++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++    |++|+ .+++...     +..
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~   75 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence            48899999999761000117799999999 9999999999999999999999998    89999 4555211     223


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      .+.+++++...    .+++.++..+.....    ......+.++++.+++.   .+.++..||+||+||+++|+||+.+|
T Consensus        76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  147 (263)
T 2pjz_A           76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP  147 (263)
T ss_dssp             EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            44125555432    367878776644322    23456678889998886   45677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+||||++||+..++.+.++|.+.
T Consensus       148 ~lllLDEPts~LD~~~~~~l~~~L~~~  174 (263)
T 2pjz_A          148 EIVGLDEPFENVDAARRHVISRYIKEY  174 (263)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred             CEEEEECCccccCHHHHHHHHHHHHHh
Confidence            999999999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.98  E-value=1.3e-32  Score=235.35  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=122.1

Q ss_pred             eEEEccceeec-cccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~i~~lsk~y-~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      |++++||++.| ++..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++...       
T Consensus         1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   73 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN   73 (243)
T ss_dssp             CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred             CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            47899999999 4432    6799999999999999999999999999999999998   99999 4655221       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC-------------CCCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-------------~~~~~lS~G~  213 (255)
                       +...+. ++++... +.  .++.++..+     +.........+.++++.+++...             ..+..||+||
T Consensus        74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq  144 (243)
T 1mv5_A           74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (243)
T ss_dssp             CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence             223454 5555432 21  244444332     11112334556677777766421             2345899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus       145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~  184 (243)
T 1mv5_A          145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS  184 (243)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.98  E-value=6.3e-33  Score=236.58  Aligned_cols=160  Identities=13%  Similarity=0.103  Sum_probs=116.7

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      |.+++++||++.|++....  +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++     ..+.
T Consensus         1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~   70 (237)
T 2cbz_A            1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY   70 (237)
T ss_dssp             -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred             CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence            4469999999999731112  6799999999999999999999999999999999998   89998 4554     2454


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHH---HHhhcCC-------CCCCCCCCCccccchhhhhhhh
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---l~~l~l~-------~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                       ++++... +  .+++.++..+..   ... ........+.   .+.++..       ...++..||+||+||+++|+||
T Consensus        71 -v~Q~~~~-~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL  142 (237)
T 2cbz_A           71 -VPQQAWI-Q--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  142 (237)
T ss_dssp             -ECSSCCC-C--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             -EcCCCcC-C--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence             6665432 2  246655554311   111 1111112121   1222221       2456779999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      +.+|++||+||||++||+..++.+.+++.
T Consensus       143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          143 YSNADIYLFDDPLSAVDAHVGKHIFENVI  171 (237)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence            99999999999999999999999999873

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.98  E-value=1.7e-32  Score=235.28  Aligned_cols=160  Identities=14%  Similarity=0.137  Sum_probs=120.8

Q ss_pred             eEEEccceeecc--ccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----
Q 025256           77 VVEARCMDEVYD--ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        77 ~l~i~~lsk~y~--~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      -++++||++.|+  +..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus         7 ~~~~~~l~~~y~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~   79 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPV----ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPN   79 (247)
T ss_dssp             EEEEEEEEEESSTTSCE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHH
T ss_pred             ceeEEEEEEEeCCCCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHH
Confidence            488999999993  322    6799999999999999999999999999999999998   99999 46663221     


Q ss_pred             ---CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCcc
Q 025256          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG  212 (255)
Q Consensus       149 ---~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G  212 (255)
                         ...+. ++++... +.  .++.++..+     +.. ......+.++++.+++.             ....+..||||
T Consensus        80 ~~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgG  149 (247)
T 2ff7_A           80 WLRRQVGV-VLQDNVL-LN--RSIIDNISL-----ANP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGG  149 (247)
T ss_dssp             HHHHHEEE-ECSSCCC-TT--SBHHHHHTT-----TCT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHH
T ss_pred             HHHhcEEE-EeCCCcc-cc--ccHHHHHhc-----cCC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHH
Confidence               12344 5665432 21  355554433     111 12334455555555442             12345799999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|+||+.+|++||+||||++||+..++.+.++|.+
T Consensus       150 q~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  190 (247)
T 2ff7_A          150 QRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  190 (247)
T ss_dssp             HHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999875

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.97  E-value=3.8e-33  Score=242.40  Aligned_cols=169  Identities=17%  Similarity=0.141  Sum_probs=122.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus        15 ~~l~~~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   90 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP-NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY   90 (271)
T ss_dssp             CCEEEEEEEECCTTCT-TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred             ceEEEEEEEEEeCCCC-CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence            4699999999997510 1126799999999999999999999999999999999998   99999 46653211      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcH------HHHHHHHHhh--cCC--CCCCCCCCCccccch
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~------~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr  216 (255)
                        ...+. ++++... +.  .++.+++.+...  ........      ..+.++++.+  ++.  .+.++..||+||+||
T Consensus        91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR  164 (271)
T 2ixe_A           91 LHTQVAA-VGQEPLL-FG--RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA  164 (271)
T ss_dssp             HHHHEEE-ECSSCCC-CS--SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred             HhccEEE-EecCCcc-cc--ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence              12344 6665532 22  366555543110  01100000      0123445555  332  345677999999999


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus       165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  202 (271)
T 2ixe_A          165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES  202 (271)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.97  E-value=4.6e-31  Score=223.94  Aligned_cols=155  Identities=12%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      .+++++||++.|+...+.  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|++ +++     ..+. 
T Consensus         5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~-   73 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-   73 (229)
T ss_dssp             EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred             ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence            479999999999631112  6799999999999999999999999999999999997   999983 554     2444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccchhhhhh
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~~a~  221 (255)
                      ++++... +.  .++.++..+     +..  .......+.++.+++.             .......||+||+||+++|+
T Consensus        74 v~q~~~~-~~--~tv~enl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           74 CSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             ECSSCCC-CS--BCHHHHHHT-----TSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EecCCcc-cC--CCHHHHhhc-----cCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            5555432 21  255554432     211  1112222333322221             11235799999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      +++.+|++||+||||++||+..++.+.+++
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l  173 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  173 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=1.6e-31  Score=229.39  Aligned_cols=157  Identities=19%  Similarity=0.115  Sum_probs=123.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +++++||++.    .    +|+++||++++|++++|+||||||||||+|+|+|+++   |+ |+ .+++....       
T Consensus         4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~   71 (249)
T 2qi9_C            4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL   71 (249)
T ss_dssp             EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred             EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence            6999999987    2    7899999999999999999999999999999999997   89 99 46653211       


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                       ...+. +.++....  ..+++.++..+.    .... .....+.++++.+++.  .+.++..||+||+||+++|++|+.
T Consensus        72 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~----~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~  143 (249)
T 2qi9_C           72 ALHRAY-LSQQQTPP--FATPVWHYLTLH----QHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  143 (249)
T ss_dssp             HHHEEE-ECSCCCCC--TTCBHHHHHHTT----CSST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             hceEEE-ECCCCccC--CCCcHHHHHHHh----hccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence             12344 55554322  235666655431    1111 1255677888988876  456677999999999999999999


Q ss_pred             CCc-------EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 QHK-------VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~-------ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+       +||+||||++||+..++.+.++|.+
T Consensus       144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999       9999999999999999999999865

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=1.7e-31  Score=230.68  Aligned_cols=164  Identities=13%  Similarity=0.052  Sum_probs=120.7

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||++.|++.. ...+|+++||+|++|++++|+||||||||||+|+|+|+++   | +|+ .+++...       
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~   90 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS   90 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence            4699999999997531 1126799999999999999999999999999999999995   5 798 4665321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (255)
                       +...+. ++++... +.  .++.++..+     +... .......++++.+++.             ...++..||+||
T Consensus        91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq  160 (260)
T 2ghi_A           91 IRSIIGI-VPQDTIL-FN--ETIKYNILY-----GKLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE  160 (260)
T ss_dssp             HHTTEEE-ECSSCCC-CS--EEHHHHHHT-----TCTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred             HhccEEE-EcCCCcc-cc--cCHHHHHhc-----cCCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence             123454 6665532 21  355555433     2111 2233444555544431             124567999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|+||+.+|++||+||||++||+..++.+.++|.+.
T Consensus       161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=3e-31  Score=233.85  Aligned_cols=162  Identities=14%  Similarity=0.106  Sum_probs=121.9

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ..|+++||++.|++. ..  +|+++||+|++|++++|+||||||||||+++|+|++.   |++|+ .+++....      
T Consensus        52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~  125 (306)
T 3nh6_A           52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS  125 (306)
T ss_dssp             CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred             CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence            359999999999642 12  6799999999999999999999999999999999998   99999 46664321      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (255)
                        ...+. ++++.... .  .++.+|+.+     +.+. .......++++.+++.             .......|||||
T Consensus       126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq  195 (306)
T 3nh6_A          126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE  195 (306)
T ss_dssp             HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred             HhcceEE-EecCCccC-c--ccHHHHHHh-----hccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence              23454 67765432 2  355555433     2211 2233444444443331             123446899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++||||+.+|+||||||||++||+...+.+.++|.+
T Consensus       196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~  235 (306)
T 3nh6_A          196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK  235 (306)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998875

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=3.1e-31  Score=240.70  Aligned_cols=161  Identities=14%  Similarity=0.157  Sum_probs=123.0

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ..|+++||+|.|+....  .+|+++||+|++||+++|+||||||||||||+|+|++    +++|+ .+++....      
T Consensus        18 ~~i~~~~l~~~y~~~~~--~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~   91 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGN--AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ   91 (390)
T ss_dssp             CCEEEEEEEEESSSSSC--CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred             CeEEEEEEEEEecCCCe--EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence            46999999999943111  2779999999999999999999999999999999998    67888 46664321      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCC-----------CCccc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------lS~G~  213 (255)
                        ...+. ++++... +.  .++.+|.       ..........+.++++.+++.  .+.++..           |||||
T Consensus        92 ~rr~ig~-v~Q~~~l-f~--~tv~enl-------~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq  160 (390)
T 3gd7_A           92 WRKAFGV-IPQKVFI-FS--GTFRKNL-------DPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH  160 (390)
T ss_dssp             HHHTEEE-ESCCCCC-CS--EEHHHHH-------CTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred             HhCCEEE-EcCCccc-Cc--cCHHHHh-------hhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence              23444 5555432 22  3444433       222233456677888888775  3444444           99999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||++||||+.+|++|||||||++||+..+++++++|.+
T Consensus       161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.96  E-value=3.2e-29  Score=238.91  Aligned_cols=165  Identities=16%  Similarity=0.134  Sum_probs=125.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..++++||++.|++..+.  +|+|+||++++||+++|+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN  414 (582)
T ss_pred             CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence            369999999999752112  6799999999999999999999999999999999998   99999 4666321       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-------------CCCCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~lS~G~  213 (255)
                       +...+. ++++.....   .++.+|..+     +.....+.+.+.++++.+++..             ......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq  485 (582)
T 3b5x_A          415 LRRHFAL-VSQNVHLFN---DTIANNIAY-----AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ  485 (582)
T ss_pred             HhcCeEE-EcCCCcccc---ccHHHHHhc-----cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence             223454 676654322   355555543     2101234455666666655431             12346899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+++|||++.+|+++|+||||++||+...+.+.+.+.+.
T Consensus       486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b5x_A          486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988753

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.95  E-value=9.8e-29  Score=235.53  Aligned_cols=164  Identities=14%  Similarity=0.098  Sum_probs=125.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .+++++||++.|++..+  .+|+|+||++++||+++|+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus       340 ~~i~~~~v~~~y~~~~~--~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREV--PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS  414 (582)
T ss_dssp             CCEEEEEEEECSSSSSC--CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred             CcEEEEEEEEEcCCCCC--ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence            35999999999974211  26799999999999999999999999999999999998   99999 46663321      


Q ss_pred             --CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccc
Q 025256          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (255)
                        ...+. ++++.....   .++.+|..+     +.....+.+.+.++++.+++.             .......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq  485 (582)
T 3b60_A          415 LRNQVAL-VSQNVHLFN---DTVANNIAY-----ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  485 (582)
T ss_dssp             HHHTEEE-ECSSCCCCS---SBHHHHHHT-----TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             HHhhCeE-EccCCcCCC---CCHHHHHhc-----cCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence              13454 677664322   366665543     210123445566666665542             122456899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|||++.+|+++|+||||++||+...+++.+.+.+
T Consensus       486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998875

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.95  E-value=9.7e-29  Score=216.44  Aligned_cols=150  Identities=11%  Similarity=0.134  Sum_probs=100.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      ++++++||++.+  ..    +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|++ +++     ..+. 
T Consensus        39 ~~l~~~~l~~~~--~~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~-  103 (290)
T 2bbs_A           39 DSLSFSNFSLLG--TP----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-  103 (290)
T ss_dssp             -----------C--CC----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred             ceEEEEEEEEcC--ce----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence            469999999864  22    7799999999999999999999999999999999997   899984 554     2444 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-------------CCCCCCCCCccccchhhhhh
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~~a~  221 (255)
                      ++++... +.  .++.++..      +..  .........++.+++.             ....+..|||||+||+++|+
T Consensus       104 v~Q~~~l-~~--~tv~enl~------~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr  172 (290)
T 2bbs_A          104 CSQNSWI-MP--GTIKENII------GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  172 (290)
T ss_dssp             ECSSCCC-CS--SBHHHHHH------TTC--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred             EeCCCcc-Cc--ccHHHHhh------Ccc--cchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence            5655432 22  25555443      211  1111222233322221             11234699999999999999


Q ss_pred             hhccCCcEEEEeCCCCCCChHHHHHHHHHH
Q 025256          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       222 ~l~~~~~ililDEp~~~LD~~~~~~l~~ll  251 (255)
                      +|+.+|++||+||||++||+..++.+.+++
T Consensus       173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l  202 (290)
T 2bbs_A          173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  202 (290)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred             HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.95  E-value=1.8e-28  Score=233.58  Aligned_cols=162  Identities=14%  Similarity=0.084  Sum_probs=121.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++...  .+|+|+||++++||+++|+||||||||||+++|+|++.   |++|+ .++|...        
T Consensus       339 ~i~~~~v~~~y~~~~~--~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  413 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEA--PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL  413 (578)
T ss_dssp             CEEEEEEEECSCSSSC--CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCCC--cceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            5899999999975322  26799999999999999999999999999999999998   99999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------C----CCCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~  214 (255)
                      +...+. ++++.....   .++.+|..+     +.+. ...+...+.++..++.         .    ......||||||
T Consensus       414 r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~  483 (578)
T 4a82_A          414 RNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK  483 (578)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred             hhheEE-EeCCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence            123454 677654322   255555432     2222 2334444555444331         1    123358999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  522 (578)
T 4a82_A          484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV  522 (578)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.95  E-value=7.5e-28  Score=227.03  Aligned_cols=162  Identities=14%  Similarity=0.103  Sum_probs=122.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++++++++++.|++.     .+..++|+|++||++||+||||||||||+|+|+|+++   |++|++ +++    ...+.
T Consensus       267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~  334 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY  334 (538)
T ss_dssp             CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred             cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence            3579999999999863     4577899999999999999999999999999999998   999985 432    22333


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                       +.++-..  ....++.++....  ..... ........++++.+++.  .+.++..|||||+|||++|++|+.+|++||
T Consensus       335 -~~q~~~~--~~~~tv~~~l~~~--~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl  408 (538)
T 3ozx_A          335 -KPQRIFP--NYDGTVQQYLENA--SKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV  408 (538)
T ss_dssp             -ECSSCCC--CCSSBHHHHHHHH--CSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             -echhccc--ccCCCHHHHHHHh--hhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence             4443221  1124555544331  11111 11223456677777765  456778999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHhh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||+..+.++.++|.+.
T Consensus       409 LDEPT~gLD~~~~~~i~~~l~~l  431 (538)
T 3ozx_A          409 LDQPSSYLDVEERYIVAKAIKRV  431 (538)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHH
T ss_pred             EeCCccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=1.4e-27  Score=228.08  Aligned_cols=159  Identities=16%  Similarity=0.092  Sum_probs=123.5

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++|+++.|++.     .++.++|++++||+++|+||||||||||+|+|+|+++   |++|++..    ....+. +
T Consensus       356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~-v  422 (607)
T 3bk7_A          356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY-K  422 (607)
T ss_dssp             EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-E
T ss_pred             eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-E
Confidence            579999999999762     4699999999999999999999999999999999997   99998532    123454 5


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD  233 (255)
                      +++....  ..+++.++....... ..   .......++++.+++.  .+.++..|||||+|||++|++|+.+|++||||
T Consensus       423 ~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLD  496 (607)
T 3bk7_A          423 PQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLD  496 (607)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             ecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            6654321  225554443322000 00   1234567788888875  35667799999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHh
Q 025256          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 Ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.++.++.++|.+
T Consensus       497 EPt~~LD~~~~~~l~~~l~~  516 (607)
T 3bk7_A          497 EPSAYLDVEQRLAVSRAIRH  516 (607)
T ss_dssp             CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=3.3e-28  Score=232.06  Aligned_cols=163  Identities=18%  Similarity=0.134  Sum_probs=120.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..++++||++.|++..+.  +|+|+||++++||+++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~  414 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKD  414 (587)
T ss_dssp             CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHH
T ss_pred             CcEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHH
Confidence            359999999999653222  6799999999999999999999999999999999998   99999 4666432       


Q ss_pred             -CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------C----CCCCCCCCCccc
Q 025256          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~  213 (255)
                       +...+. ++++.....   .++.+|..     ++.+ ....+...+.++..++         +    .......|||||
T Consensus       415 ~r~~i~~-v~Q~~~lf~---~tv~eni~-----~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq  484 (587)
T 3qf4_A          415 LRGHISA-VPQETVLFS---GTIKENLK-----WGRE-DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ  484 (587)
T ss_dssp             HHHHEEE-ECSSCCCCS---EEHHHHHT-----TTCS-SCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred             HHhheEE-ECCCCcCcC---ccHHHHHh-----ccCC-CCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence             122444 677654322   24444432     2222 2233334344433322         2    134566899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|||++.+|+++|+||||++||+...+++.+.+.+
T Consensus       485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~  524 (587)
T 3qf4_A          485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR  524 (587)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=1.8e-27  Score=224.74  Aligned_cols=160  Identities=16%  Similarity=0.073  Sum_probs=122.9

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      .++++++|+++.|++.     .++.++|+|++||++||+||||||||||+|+|+|+++   |++|++..    ....+. 
T Consensus       285 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~-  351 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY-  351 (538)
T ss_dssp             CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-
T ss_pred             CeEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-
Confidence            3579999999999762     4699999999999999999999999999999999997   99998532    223454 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEE
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      ++++....  ..+++.++....... ..   .......++++.+++.  .+.++..|||||+|||++|++|+.+|++||+
T Consensus       352 v~Q~~~~~--~~~tv~~~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL  425 (538)
T 1yqt_A          352 KPQYIKAD--YEGTVYELLSKIDAS-KL---NSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL  425 (538)
T ss_dssp             ECSSCCCC--CSSBHHHHHHHHHHH-HH---TCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EecCCcCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            66654321  224554433221000 11   1234456777777775  3566779999999999999999999999999


Q ss_pred             eCCCCCCChHHHHHHHHHHHh
Q 025256          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 DEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.+++++.++|.+
T Consensus       426 DEPt~~LD~~~~~~i~~~l~~  446 (538)
T 1yqt_A          426 DEPSAYLDVEQRLAVSRAIRH  446 (538)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.94  E-value=4.9e-28  Score=231.32  Aligned_cols=161  Identities=16%  Similarity=0.139  Sum_probs=119.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++.. .  +|+|+||++++|++++|+||||||||||+++|+|++.   |++|+ .++|...        
T Consensus       354 ~i~~~~v~~~y~~~~-~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~  427 (598)
T 3qf4_B          354 EIEFKNVWFSYDKKK-P--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL  427 (598)
T ss_dssp             CEEEEEEECCSSSSS-C--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEECCCCC-c--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence            589999999997521 2  6799999999999999999999999999999999998   99999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------CCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.....   .++.+|..+     +.+. ...+...++++..++.         .+.    ....||||||
T Consensus       428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~  497 (598)
T 3qf4_B          428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR  497 (598)
T ss_dssp             HHHEEE-ECTTCCCCS---SBHHHHHHS-----SSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred             HhceEE-EeCCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence            112444 677664322   355555432     2221 1223333444333321         111    1248999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  536 (598)
T 3qf4_B          498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK  536 (598)
T ss_dssp             HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.94  E-value=2.5e-27  Score=226.20  Aligned_cols=160  Identities=16%  Similarity=0.088  Sum_probs=114.2

Q ss_pred             ceEEE--------ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------
Q 025256           76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------  141 (255)
Q Consensus        76 ~~l~i--------~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------  141 (255)
                      .+|++        +||++.|++.  . .+++++| ++++|+++||+||||||||||+|+|+|++.   |++|++      
T Consensus        82 ~~i~i~~l~~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~  154 (607)
T 3bk7_A           82 NAISIVNLPEQLDEDCVHRYGVN--A-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN  154 (607)
T ss_dssp             CCCEEEEECTTGGGSEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred             ceEEEecCCccccCCeEEEECCC--C-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence            35777        8999999763  1 2679999 999999999999999999999999999997   999973      


Q ss_pred             ----cCCCCC----------CCCeeEEEecCCCCCcCc--cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CC
Q 025256          142 ----FDSQVK----------PPDVATVLPMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GS  203 (255)
Q Consensus       142 ----~~~~~~----------~~~~g~~i~~d~~~~~~~--~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~  203 (255)
                          +.+...          ....+. +.+. ......  ..++.++..    .   ..  ....+.++++.+++.  .+
T Consensus       155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~~q~-~~~~~~~~~~tv~e~l~----~---~~--~~~~~~~~L~~lgL~~~~~  223 (607)
T 3bk7_A          155 VIRAFRGNELQNYFERLKNGEIRPVV-KPQY-VDLLPKAVKGKVRELLK----K---VD--EVGKFEEVVKELELENVLD  223 (607)
T ss_dssp             HHHHTTTSTHHHHHHHHHHTSCCCEE-ECSC-GGGGGGTCCSBHHHHHH----H---TC--CSSCHHHHHHHTTCTTGGG
T ss_pred             hhheeCCEehhhhhhhhhhhhcceEE-eech-hhhchhhccccHHHHhh----h---hH--HHHHHHHHHHHcCCCchhC
Confidence                222110          011121 1111 000000  001111111    1   01  112356788888876  35


Q ss_pred             CCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .++.+|||||+||+++|+||+.+|++|||||||++||+..++++.++|.+
T Consensus       224 ~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  273 (607)
T 3bk7_A          224 RELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR  273 (607)
T ss_dssp             SBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             CChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            67779999999999999999999999999999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=8.3e-27  Score=220.14  Aligned_cols=159  Identities=15%  Similarity=0.071  Sum_probs=110.4

Q ss_pred             EEE-ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc----------cCCCC
Q 025256           78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV  146 (255)
Q Consensus        78 l~i-~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~----------~~~~~  146 (255)
                      .++ +||+|.|++.  . .+++++| +|++||++||+||||||||||+|+|+|++.   |++|++          +++..
T Consensus        21 ~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~   93 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--A-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE   93 (538)
T ss_dssp             ---CCCEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred             hhHhcCcEEEECCc--c-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence            344 5899999763  1 2679999 999999999999999999999999999997   999973          22221


Q ss_pred             C----------CCCeeEEEecCCCCCcCc-cCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccc
Q 025256          147 K----------PPDVATVLPMDGFHLYLS-QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (255)
Q Consensus       147 ~----------~~~~g~~i~~d~~~~~~~-~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (255)
                      .          ....+. +.+.-...... ..++.++.    ....     ....+.++++.+++.  .+.++.+|||||
T Consensus        94 ~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~v~e~~----~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe  163 (538)
T 1yqt_A           94 LQNYFEKLKNGEIRPVV-KPQYVDLIPKAVKGKVIELL----KKAD-----ETGKLEEVVKALELENVLEREIQHLSGGE  163 (538)
T ss_dssp             HHHHHHHHHTTSCCCEE-ECSCGGGSGGGCCSBHHHHH----HHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred             HHHHHHHHHHHhhhhhh-hhhhhhhcchhhhccHHHHH----hhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence            0          011122 11110000000 00111111    1111     112356788888876  356677999999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus       164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  203 (538)
T 1yqt_A          164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR  203 (538)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.4e-25  Score=212.41  Aligned_cols=156  Identities=18%  Similarity=0.202  Sum_probs=114.7

Q ss_pred             ccceeeccccccccccccccceecCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~G-----eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .++.+.|++.. .  ++++++|++.+|     |++||+||||||||||+|+|+|+++   |++|+.+.    ....+. +
T Consensus       350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~  418 (608)
T 3j16_B          350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K  418 (608)
T ss_dssp             SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred             cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence            67788886532 2  569999999998     7899999999999999999999998   99997321    122333 4


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD  233 (255)
                      .++-...+  ..++.++..  ....+  .........++++.+++.  .+.++..|||||+|||++|++|+.+|++||+|
T Consensus       419 ~q~~~~~~--~~tv~e~~~--~~~~~--~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          419 PQKIAPKF--PGTVRQLFF--KKIRG--QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             CSSCCCCC--CSBHHHHHH--HHCSS--TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             cccccccC--CccHHHHHH--HHhhc--ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            44322111  123333221  11111  112344566788888876  46778899999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHh
Q 025256          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 Ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.++.++.++|.+
T Consensus       493 EPT~gLD~~~~~~i~~ll~~  512 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRR  512 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=2.6e-26  Score=235.81  Aligned_cols=164  Identities=16%  Similarity=0.128  Sum_probs=128.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||+++|++.. ...+|+|+||+|++||.+||+||||||||||+++|.|++.   |++|+ .+||...        
T Consensus      1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence            589999999997532 2236799999999999999999999999999999999998   99999 5777432        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCC---------CCCC----CCCCCccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV  213 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~  213 (255)
                      +...+. |+++.+...   -++.+|+     .+|. +.+...+.+.++++..++.         .+..    ...|||||
T Consensus      1152 R~~i~~-V~Qdp~LF~---gTIreNI-----~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1152 RSQIAI-VSQEPTLFD---CSIAENI-----IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HTTEEE-ECSSCCCCS---EEHHHHH-----SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             HhheEE-ECCCCEeeC---ccHHHHH-----hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence            234554 888876543   2444443     2343 3455666777777665542         2322    34799999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|||++.+|+||||||||+.||+++.+.+.+.|++
T Consensus      1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.92  E-value=7e-26  Score=224.24  Aligned_cols=170  Identities=14%  Similarity=0.154  Sum_probs=120.2

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeE
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++++++|+++.|++..+.  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|++ ++++.   ..+.
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y  740 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY  740 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred             CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence            3579999999999752112  6799999999999999999999999999999999997   999994 43321   1111


Q ss_pred             EEecCC-----------------------CCC---------------------------------------------c--
Q 025256          154 VLPMDG-----------------------FHL---------------------------------------------Y--  163 (255)
Q Consensus       154 ~i~~d~-----------------------~~~---------------------------------------------~--  163 (255)
                       +.++.                       ...                                             +  
T Consensus       741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~  819 (986)
T 2iw3_A          741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC  819 (986)
T ss_dssp             -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence             11110                       000                                             0  


Q ss_pred             --------------CccCCcccChH-------H-H-----------HHhcCCCCCCcHHHHHHHHHhhcCCC----CCCC
Q 025256          164 --------------LSQLDAMEDPK-------E-A-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYA  206 (255)
Q Consensus       164 --------------~~~l~~~e~~~-------~-~-----------~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~  206 (255)
                                    ...++..++..       . .           ....+.........+.++++.+++..    +.++
T Consensus       820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~  899 (986)
T 2iw3_A          820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI  899 (986)
T ss_dssp             EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred             hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence                          00011111100       0 0           00123222334456788899998852    4567


Q ss_pred             CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..|||||+||+++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus       900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~  946 (986)
T 2iw3_A          900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE  946 (986)
T ss_dssp             GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.2e-25  Score=214.50  Aligned_cols=164  Identities=13%  Similarity=0.093  Sum_probs=108.8

Q ss_pred             cceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccC------------CCCC--
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD------------SQVK--  147 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~------------~~~~--  147 (255)
                      +++++|+...   ..+++++ .+++|+++||+||||||||||+|+|+|+++   |++|++..            +...  
T Consensus        82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~  154 (608)
T 3j16_B           82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN  154 (608)
T ss_dssp             TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred             CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence            6778887532   1345555 689999999999999999999999999998   99997521            1000  


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                            .......+. ..+ .............................+.++++.+++.  .+..+..|||||+||+++
T Consensus       155 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i  232 (608)
T 3j16_B          155 YFTKMLEDDIKAIIK-PQY-VDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI  232 (608)
T ss_dssp             HHHHHHHTSCCCEEE-CCC-TTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred             hhhHHHHHhhhhhhc-hhh-hhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence                  000000000 000 0000000000000011111111223345677888988886  467788999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+.+|++||+||||++||+..+..+.+++.+.
T Consensus       233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l  267 (608)
T 3j16_B          233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL  267 (608)
T ss_dssp             HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred             HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998763

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=2.5e-25  Score=228.14  Aligned_cols=164  Identities=16%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++.. ...+|+|+||+|++||++||+||||||||||+++|+|++.   |++|+ .++|...        
T Consensus      1030 ~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp             CEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred             cEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence            589999999997532 2236799999999999999999999999999999999998   99999 4776432        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC-CCCcHHHHHHHHHhhcC---------CCCC----CCCCCCccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~  213 (255)
                      +...+. ++++.....   .++.+|+.+     +.+ .....+...+.++..++         +.+.    ....|||||
T Consensus      1106 r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A         1106 RAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp             TTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred             HhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence            234554 788764322   354444322     221 12233444444444332         1111    235899999


Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++||+|+.+|+|||+||||++||+.+.+.+.+.+++
T Consensus      1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.92  E-value=2.1e-25  Score=228.71  Aligned_cols=163  Identities=17%  Similarity=0.144  Sum_probs=121.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|.|++.   |++|+ .++|...        
T Consensus       387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence            489999999997532 2237799999999999999999999999999999999998   99999 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHh---------hcCCCC----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~----~~~~~lS~G~~  214 (255)
                      +...+. ++++.....   .++.+|+.+..     + ....+.+.+.++.         +..+.+    .....||||||
T Consensus       463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~  532 (1284)
T 3g5u_A          463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK  532 (1284)
T ss_dssp             HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred             HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence            112454 777765332   36666654421     1 1223333333332         222222    24458999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+|||+||||++||+...+.+.+.++.
T Consensus       533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~  571 (1284)
T 3g5u_A          533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK  571 (1284)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.92  E-value=4.4e-25  Score=218.54  Aligned_cols=156  Identities=13%  Similarity=0.007  Sum_probs=112.5

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .+...|+++.|++..    +|+++||++++|++++|+||||||||||+|+|+|-.    . .|.....   ....+. +.
T Consensus       435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~~---~~~~~~-v~  501 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQE---ECRTVY-VE  501 (986)
T ss_dssp             EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCTT---TSCEEE-TT
T ss_pred             eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCcccc---ceeEEE-Ec
Confidence            466669999998744    779999999999999999999999999999999621    0 1110000   111121 22


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCcEEEEe
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~ililD  233 (255)
                      ++... ....+++.++...     .... . ...+.++++.+++.   .+.++..||||||||+++|++|+.+|++||||
T Consensus       502 q~~~~-~~~~ltv~e~l~~-----~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD  573 (986)
T 2iw3_A          502 HDIDG-THSDTSVLDFVFE-----SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD  573 (986)
T ss_dssp             CCCCC-CCTTSBHHHHHHT-----TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ccccc-cccCCcHHHHHHH-----hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            22111 1122454443322     1111 1 45678889999884   35678899999999999999999999999999


Q ss_pred             CCCCCCChHHHHHHHHHHHh
Q 025256          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 Ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.+++.+.++|.+
T Consensus       574 EPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          574 EPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             STTTTCCHHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHh
Confidence            99999999999999998864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.91  E-value=6e-25  Score=225.76  Aligned_cols=163  Identities=16%  Similarity=0.143  Sum_probs=123.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      -|+++||++.|+... ...+|+|+||+|++|+.++|+||+|||||||+++|.|++.   |++|+ .++|...+       
T Consensus       415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence            489999999997532 2336799999999999999999999999999999999998   99999 46663221       


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (255)
                       ...+. ++++.....   -++.+|+.     +|.+ ..+.+.+.++++...+         +.+.    ....||||||
T Consensus       491 r~~i~~-v~Q~~~Lf~---~TI~eNI~-----~g~~-~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk  560 (1321)
T 4f4c_A          491 RKNVAV-VSQEPALFN---CTIEENIS-----LGKE-GITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK  560 (1321)
T ss_dssp             HHHEEE-ECSSCCCCS---EEHHHHHH-----TTCT-TCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred             hhcccc-cCCcceeeC---CchhHHHh-----hhcc-cchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence             13444 777776443   35555543     3333 2345555555554432         3332    2348999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||+..+|+|+||||||++||+.+.+.+.+.|+.
T Consensus       561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~  599 (1321)
T 4f4c_A          561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK  599 (1321)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888888764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=1.7e-24  Score=209.32  Aligned_cols=168  Identities=17%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHH---------------------HHHHHhhcccCCCCc
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKA  139 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLl---------------------k~L~gll~~~~p~~G  139 (255)
                      +++++.|-... ...+|+||||+|++|+++||+||||||||||+                     +++.|+..   |+.|
T Consensus        19 ~~~~~~~~~~~-~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~   94 (670)
T 3ux8_A           19 SHMDKIIVKGA-RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVD   94 (670)
T ss_dssp             ---CEEEEEEE-CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCS
T ss_pred             CCcceEEEcCC-CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCcc
Confidence            34555552221 22378999999999999999999999999998                     88888876   7755


Q ss_pred             cc--------cCCCCC----CCCeeEEEecCCCCC-----------------cCccCCcccChHHHHHhc--CCCCCC--
Q 025256          140 SS--------FDSQVK----PPDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTF--  186 (255)
Q Consensus       140 ~~--------~~~~~~----~~~~g~~i~~d~~~~-----------------~~~~l~~~e~~~~~~~~~--g~~~~~--  186 (255)
                      .+        +++...    ....|. +.+.....                 ....+++.++..+.....  ......  
T Consensus        95 ~i~~~~~~i~~~~~~~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~  173 (670)
T 3ux8_A           95 AIEGLSPAISIDQKTTSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIAR  173 (670)
T ss_dssp             EEESCCCEEEESSCC-----CCBHHH-HTTCC-------------------------CC---------------------
T ss_pred             ceeccccceEecCchhhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHH
Confidence            42        111100    011111 11000000                 001134444443321100  000000  


Q ss_pred             ----cHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          187 ----NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       187 ----~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                          .......+++.+++.   .+.++.+|||||+|||++|+||+.+|+  +||+||||++||+..++.+.++|.+
T Consensus       174 ~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~  249 (670)
T 3ux8_A          174 LILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS  249 (670)
T ss_dssp             -----CHHHHHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence                011123457777775   357788999999999999999999988  9999999999999999999999875

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.90  E-value=6.9e-24  Score=200.02  Aligned_cols=159  Identities=14%  Similarity=0.063  Sum_probs=103.9

Q ss_pred             ccceeecccccccccccccccee-cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc------------cCCCCC
Q 025256           81 RCMDEVYDALAQRLLPTSALASN-VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK  147 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~-i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~------------~~~~~~  147 (255)
                      ++++.+|+.+.     ++-..+. +++|+++||+||||||||||+|+|+|+++   |++|++            +.+...
T Consensus         3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i   74 (538)
T 3ozx_A            3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI   74 (538)
T ss_dssp             CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred             CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence            35678888642     2333343 45899999999999999999999999998   999974            222111


Q ss_pred             --------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchh
Q 025256          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 --------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv  217 (255)
                              ....+. ....++......+... ..........     ......++++.+++.  .+..+..|||||+|||
T Consensus        75 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv  147 (538)
T 3ozx_A           75 YNYFKELYSNELKI-VHKIQYVEYASKFLKG-TVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQRL  147 (538)
T ss_dssp             HHHHHHHHTTCCCE-EEECSCTTGGGTTCCS-BHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred             HHHHHHHhhcccch-hhccchhhhhhhhccC-cHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence                    011111 1111110000000000 0011010110     112345677777765  4667789999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+||+.+|++|||||||++||+..+..+.++|.+.
T Consensus       148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l  184 (538)
T 3ozx_A          148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL  184 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998763

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=2e-25  Score=197.42  Aligned_cols=142  Identities=21%  Similarity=0.288  Sum_probs=108.5

Q ss_pred             eEEEccceeecccccccccccccccee-----------------------cCCCeEEEEECCCCCcHHHHHHHHHHhhcc
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~-----------------------i~~Geiv~LiGpNGsGKSTLlk~L~gll~~  133 (255)
                      .|++++|++.|+.      +++++++.                       +++|+++||+||||||||||+++|+|++. 
T Consensus        43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-  115 (312)
T 3aez_A           43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-  115 (312)
T ss_dssp             CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred             eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence            5889999999964      33444443                       88999999999999999999999999997 


Q ss_pred             cCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCcc
Q 025256          134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG  212 (255)
Q Consensus       134 ~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G  212 (255)
                        |+.|        ....+. +++|+++...   ++.++.... ..++.+..++...+.++++.++.+. +..++.||+|
T Consensus       116 --~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G  180 (312)
T 3aez_A          116 --RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL  180 (312)
T ss_dssp             --TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred             --ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence              6555        234454 8888875431   333332211 1135556667778888898888443 3678899999


Q ss_pred             ccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          213 VGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       213 ~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      |+||+++|++++.+|+|||+|||++++|
T Consensus       181 ~~qRv~~a~al~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          181 HYDIIPGAEQVVRHPDILILEGLNVLQT  208 (312)
T ss_dssp             TTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred             hhhhhhhHHHhccCCCEEEECCccccCC
Confidence            9999999999999999999999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.86  E-value=4.2e-22  Score=192.61  Aligned_cols=64  Identities=13%  Similarity=0.006  Sum_probs=53.7

Q ss_pred             HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.++.+++.   .+.++..|||||+|||++|+||+.+|   ++||+||||++||+..++++.++|.+.
T Consensus       523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l  592 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL  592 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            34566666664   24567799999999999999998876   599999999999999999999998753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=1.1e-22  Score=169.99  Aligned_cols=128  Identities=16%  Similarity=0.061  Sum_probs=81.8

Q ss_pred             eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC----C--CCCCCeeEEEecC
Q 025256           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS----Q--VKPPDVATVLPMD  158 (255)
Q Consensus        85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~----~--~~~~~~g~~i~~d  158 (255)
                      |.|+...    +|+++    ++|++++|+||||||||||+++|+|+ +   |++|++...    .  ......|. ++++
T Consensus         8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~   74 (208)
T 3b85_A            8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT   74 (208)
T ss_dssp             CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred             CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence            4566543    67885    79999999999999999999999999 7   999985210    0  00111121 2221


Q ss_pred             CCCCcCccCCcccCh-HH---HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          159 GFHLYLSQLDAMEDP-KE---AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       159 ~~~~~~~~l~~~e~~-~~---~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      .          .++. .+   ......  .......+.++++. ++           ||+||+++|++|+.+|++||+||
T Consensus        75 ~----------~enl~~~~~~~~~~~~--~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDE  130 (208)
T 3b85_A           75 L----------NEKIDPYLRPLHDALR--DMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDE  130 (208)
T ss_dssp             ---------------CTTTHHHHHHHT--TTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECS
T ss_pred             H----------HHHHHHHHHHHHHHHH--HhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeC
Confidence            1          1111 11   000110  00112234444443 21           99999999999999999999999


Q ss_pred             CCCCCChHHHHHHHHHHHh
Q 025256          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++    .++.+.++|.+
T Consensus       131 Pts~----~~~~l~~~l~~  145 (208)
T 3b85_A          131 AQNT----TPAQMKMFLTR  145 (208)
T ss_dssp             GGGC----CHHHHHHHHTT
T ss_pred             Cccc----cHHHHHHHHHH
Confidence            9999    77888888754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.85  E-value=8.6e-25  Score=202.51  Aligned_cols=159  Identities=14%  Similarity=0.028  Sum_probs=106.3

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-c-c-cCCCCCCCCe
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV  151 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G-~-~-~~~~~~~~~~  151 (255)
                      .++++++||++.|+          +++|++++|++++|+||||||||||+|+|+|++.   |++| + + ++++. ....
T Consensus       116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i  181 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI  181 (460)
T ss_dssp             CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred             cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence            34677888888874          5889999999999999999999999999999997   8899 7 4 44432 1222


Q ss_pred             eEEEecCCCC-CcCccCCcccChHHHHHh-cCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhh--hccCC
Q 025256          152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH  227 (255)
Q Consensus       152 g~~i~~d~~~-~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~--l~~~~  227 (255)
                      +. +.++... .....+++.++. +.... .+.   ........+++.+++........||+||+||+++|++  |+.+|
T Consensus       182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p  256 (460)
T 2npi_A          182 FT-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP  256 (460)
T ss_dssp             SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ee-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence            22 2222110 001112333333 11100 010   0111122344455554433467899999999999999  99999


Q ss_pred             cE----EEEeC-CCCCCChHHHHHHHHHHHh
Q 025256          228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~i----lilDE-p~~~LD~~~~~~l~~ll~~  253 (255)
                      ++    ||+|| ||++||+. ++.+.+++.+
T Consensus       257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred             ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence            99    99999 99999998 7777777654

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.82  E-value=8.4e-21  Score=186.17  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccC---CcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       190 ~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~---~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++++.+++..   ...+..|||||+||+++|++|+.+   |++|||||||++||+..++++.++|++.
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L  779 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL  779 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            4467788888864   566779999999999999999986   7999999999999999999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.82  E-value=2.3e-22  Score=183.59  Aligned_cols=141  Identities=8%  Similarity=-0.046  Sum_probs=103.7

Q ss_pred             cccccceecCCCe--------------------EEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEE
Q 025256           96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        96 ~l~~vsl~i~~Ge--------------------iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      ++++++|++++|+                    ++||+||||||||||+|+|+|++.   |++|++ +++.... ..+. 
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~-  112 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH-  112 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence            6799999999999                    999999999999999999999997   999994 5443221 2244 


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCcc--ccchhhhhhhhcc-------
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL-------  225 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G--~~qrv~~a~~l~~-------  225 (255)
                      +.++..   ..+++..+++.+.     ..    .....+.++.+++........+|+|  |+||+.+|++++.       
T Consensus       113 v~q~~~---~~~ltv~D~~g~~-----~~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l  180 (413)
T 1tq4_A          113 PYKHPN---IPNVVFWDLPGIG-----ST----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF  180 (413)
T ss_dssp             EEECSS---CTTEEEEECCCGG-----GS----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred             eccccc---cCCeeehHhhccc-----ch----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence            444332   1124555544321     11    1234566777766532222349999  9999999999999       


Q ss_pred             ---CCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ---~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                         +|+++++||||++||+..++++++++.+
T Consensus       181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~  211 (413)
T 1tq4_A          181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRL  211 (413)
T ss_dssp             EECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             EEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence               9999999999999999999999888765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.81  E-value=1.1e-21  Score=158.72  Aligned_cols=46  Identities=4%  Similarity=-0.174  Sum_probs=40.6

Q ss_pred             CCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH----------------HHHHHHHHHH
Q 025256          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VWKDVSSMFD  252 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~----------------~~~~l~~ll~  252 (255)
                      ...|+|++||+++|++++.+|++|++||||++||+.                .+.++.+++.
T Consensus        82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~  143 (171)
T 4gp7_A           82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK  143 (171)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence            455999999999999999999999999999999998                5577777754

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.81  E-value=7.1e-20  Score=180.49  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=55.4

Q ss_pred             HHHHHHhhcCCC---CCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..++++.+++..   ...+..|||||+||+++|++|+.+|   ++|||||||++||+..+++++++|.+.
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L  894 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL  894 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            356778888764   4667799999999999999999764   999999999999999999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.79  E-value=3.3e-19  Score=176.28  Aligned_cols=66  Identities=11%  Similarity=0.023  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC---cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~---~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ....++++.++++   ....+..|||||+||+++|++|+.+|   ++|||||||++||+...+.+.++|++.
T Consensus       783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L  854 (916)
T 3pih_A          783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL  854 (916)
T ss_dssp             HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            3456778888886   34677899999999999999998765   799999999999999999999998753

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.79  E-value=7.7e-20  Score=166.78  Aligned_cols=46  Identities=15%  Similarity=0.001  Sum_probs=43.8

Q ss_pred             CCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||+||+++|++++.+|  ++|||||||++||+..++.+.++|.+.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l  343 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL  343 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            6999999999999999999  999999999999999999999998763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.79  E-value=9.3e-20  Score=155.33  Aligned_cols=133  Identities=22%  Similarity=0.321  Sum_probs=85.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      +|+++||++++|+++||+||||||||||+++|+|++.       . .++  ......+. +.++.++.   .++..++..
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~-v~~d~~~~---~l~~~~~~~   80 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVI-LSQDRFYK---VLTAEQKAK   80 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEE-EeCCcCcc---ccCHhHhhh
Confidence            7899999999999999999999999999999999873       1 111  00123343 67765321   244443333


Q ss_pred             HHHHhcCC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256          175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       175 ~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~  242 (255)
                      .....+.+  +..++...+.+.++.+.......++.||+||+||+++ ++++.+|+++|+|||....+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~  149 (245)
T 2jeo_A           81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE  149 (245)
T ss_dssp             HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred             hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence            22211222  2234555667777777666777889999999999987 5778899999999999888753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.78  E-value=4.9e-21  Score=168.30  Aligned_cols=128  Identities=12%  Similarity=0.105  Sum_probs=89.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      +|+++||++.|+ ..    +|+++||+|++|++++|+||||||||||+++|+|++      +|             .++.
T Consensus       101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G-------------~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GG-------------SVLS  156 (305)
T ss_dssp             HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TC-------------EEEC
T ss_pred             eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------Cc-------------eEEE
Confidence            478999999997 32    779999999999999999999999999999999998      23             3221


Q ss_pred             ---cCCCCCcCccCCccc-ChHHHHHhcCCCCCCcHHHHHHHHHh-hcCCCCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          157 ---MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       157 ---~d~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~-l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                         ++.. ++.  .+..+ ++.+       ..... ....+.++. +..+.+  ...||+|||||   ||+++.+|+|||
T Consensus       157 ~v~q~~~-lf~--~ti~~~ni~~-------~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl  220 (305)
T 2v9p_A          157 FANHKSH-FWL--ASLADTRAAL-------VDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV  220 (305)
T ss_dssp             GGGTTSG-GGG--GGGTTCSCEE-------EEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE
T ss_pred             EecCccc-ccc--ccHHHHhhcc-------Ccccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE
Confidence               1111 110  12211 2111       11111 133444554 322222  67899999999   999999999999


Q ss_pred             EeCCCCCCChHHHHHHH
Q 025256          232 VDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~  248 (255)
                          |++||+...+.+.
T Consensus       221 ----Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          221 ----TSNIDVQAEDRYL  233 (305)
T ss_dssp             ----EESSCSTTCGGGG
T ss_pred             ----ECCCCHHHHHHHH
Confidence                9999998776654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.74  E-value=5.5e-20  Score=149.88  Aligned_cols=51  Identities=12%  Similarity=0.039  Sum_probs=45.7

Q ss_pred             CCCCCCCCccccchhhhhhh-----hccCCcEEEEeC--CCCCCChHHHHHHHHHHHh
Q 025256          203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~~qrv~~a~~-----l~~~~~ililDE--p~~~LD~~~~~~l~~ll~~  253 (255)
                      ..++..||+||+||+++|++     ++.+|+++|+||  |++++|+..++.+.+++++
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            34456899999999999996     999999999999  9999999999999998864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.70  E-value=2.2e-17  Score=146.22  Aligned_cols=50  Identities=14%  Similarity=0.044  Sum_probs=45.0

Q ss_pred             CCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          205 YAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+..||+||+||+++|++++    .+|+++|+||||++||+..++.+.+++.+.
T Consensus       216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~  269 (322)
T 1e69_A          216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN  269 (322)
T ss_dssp             BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            45589999999999999986    688999999999999999999999988653

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.69  E-value=7.4e-17  Score=145.35  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=46.7

Q ss_pred             CCCCCCCccccchhhhhhhhc------cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~------~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      .++..|||||+||+++|++|+      .+|++||+||||++||+..++.+.++|.+.
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l  331 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL  331 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            456689999999999999998      799999999999999999999999998763

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.66  E-value=2.3e-17  Score=142.88  Aligned_cols=127  Identities=13%  Similarity=0.050  Sum_probs=71.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      .++|+||||||||||+|+|+|+..   |++|+ .+++....     ...+. +.++...  ...+++.+++.+.....  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~~--~~~ltv~d~~~~g~~~~--   75 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGGV--KMKLTVIDTPGFGDQIN--   75 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC------CCEEEEECCCC--CCSB--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCCC--cCCceEEechhhhhhcc--
Confidence            589999999999999999999997   99998 35443221     12233 3333221  12356666665432111  


Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHH
Q 025256          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~  249 (255)
                       .......+...++.  -..+.....||+||+||+++||+++.   ++++|||+.+||+...+.+..
T Consensus        76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~  136 (270)
T 3sop_A           76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH  136 (270)
T ss_dssp             -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence             11112222222221  01122345799999999999999874   999999999999987544443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.66  E-value=4e-18  Score=149.86  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=75.6

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~  176 (255)
                      +..++|++++|++++|+||||||||||+++|+|+++   |++|+              +.+.+.+.++.  ...+.....
T Consensus        90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~--------------V~l~g~d~~r~--~a~~ql~~~  150 (302)
T 3b9q_A           90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIW  150 (302)
T ss_dssp             CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHH
T ss_pred             ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCe--------------EEEEeecccch--hHHHHHHHH
Confidence            367899999999999999999999999999999996   66554              22233222110  000001111


Q ss_pred             H--HhcCC-CCCCc-HHHHHHHHHhhc----------------CCC--CCCCCCCCccccchhhhhhhhccCCc--EEEE
Q 025256          177 H--ARRGA-PWTFN-PLLLLNCLKNLR----------------NQG--SVYAPSFDHGVGDPVEDDILVGLQHK--VVIV  232 (255)
Q Consensus       177 ~--~~~g~-~~~~~-~~~~~~~l~~l~----------------l~~--~~~~~~lS~G~~qrv~~a~~l~~~~~--ilil  232 (255)
                      .  ...++ ++... ......+.+++.                +..  +..+.+||   +||+++|++++.+|+  +|++
T Consensus       151 ~~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvL  227 (302)
T 3b9q_A          151 AERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVL  227 (302)
T ss_dssp             HHHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred             HHhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence            1  11222 22221 111122222211                110  11122466   899999999999999  9999


Q ss_pred             eCCCCCCChHHH
Q 025256          233 DGNYLFLDGGVW  244 (255)
Q Consensus       233 DEp~~~LD~~~~  244 (255)
                      | ||+++|+..+
T Consensus       228 D-ptsglD~~~~  238 (302)
T 3b9q_A          228 D-GNTGLNMLPQ  238 (302)
T ss_dssp             E-GGGGGGGHHH
T ss_pred             e-CCCCcCHHHH
Confidence            9 9999998754

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.66  E-value=5.9e-18  Score=140.32  Aligned_cols=129  Identities=24%  Similarity=0.268  Sum_probs=88.0

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~  183 (255)
                      .++|+++||+||||||||||+++|+|++.                +..+. +.+|.++.....++..++..   ..++.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~~~---~~~~~~   62 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEERLR---VNYDHP   62 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHHHH---SCTTSG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHhcC---CCCCCh
Confidence            46899999999999999999999999983                23444 77777654322233222111   112234


Q ss_pred             CCCcHHHHHHHHHhhcCCCCC--CCCCCCcccc----chhhhhhhhccCCcEEEEeCCCCC-------CChHHHHHHHHH
Q 025256          184 WTFNPLLLLNCLKNLRNQGSV--YAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM  250 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~--~~~~lS~G~~----qrv~~a~~l~~~~~ililDEp~~~-------LD~~~~~~l~~l  250 (255)
                      ...+...+.+.++.+++....  ....+|+|++    ||++++++++.++.++++|||+.+       ||......+.+.
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~  142 (211)
T 3asz_A           63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR  142 (211)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence            445566677788877766432  3447788864    677888888888888888888888       888777777776


Q ss_pred             HH
Q 025256          251 FD  252 (255)
Q Consensus       251 l~  252 (255)
                      +.
T Consensus       143 l~  144 (211)
T 3asz_A          143 LK  144 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.65  E-value=2e-18  Score=144.85  Aligned_cols=143  Identities=12%  Similarity=0.033  Sum_probs=77.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCC---CC------CeeEEEecCCCCCcCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVK---PP------DVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~---~~------~~g~~i~~d~~~~~~~~  166 (255)
                      .|+++||++++|++++|+||||||||||+++|+|++    |  |++..+...   .+      ..+. ++++... +...
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~g~~~~~~~~~~~~~~~i~~-~~~~~~~-~~~~   83 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYFSVSCTTRKKREKEKEGVDY-YFIDKTI-FEDK   83 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEECCCEECSCCCSSCCBTTTB-EECCHHH-HHHH
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEEeecccCCCCCcccccCCeE-EECCHHH-HHHh
Confidence            579999999999999999999999999999999987    6  662112110   00      1111 1111100 0000


Q ss_pred             ---CCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhh-----hhhhccCCcEEEEeCCCCC
Q 025256          167 ---LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGNYLF  238 (255)
Q Consensus       167 ---l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~-----a~~l~~~~~ililDEp~~~  238 (255)
                         -...++..+....++    .......++++.....  ...-.+||||+||+++     +++++.+|+++++|||++.
T Consensus        84 ~~~~~~l~~~~~~~~~~g----~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~  157 (218)
T 1z6g_A           84 LKNEDFLEYDNYANNFYG----TLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLT  157 (218)
T ss_dssp             HHTTCEEEEEEETTEEEE----EEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHH
T ss_pred             hhccchhhhhhcccccCC----CcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHh
Confidence               000000000000001    1122344455443221  1114679999999999     8899999999999999999


Q ss_pred             CChHHHHHHHHHHH
Q 025256          239 LDGGVWKDVSSMFD  252 (255)
Q Consensus       239 LD~~~~~~l~~ll~  252 (255)
                      +|....+.+.+.+.
T Consensus       158 ~d~~~~~~i~~~l~  171 (218)
T 1z6g_A          158 RNTENQEQIQKRME  171 (218)
T ss_dssp             TCCCCHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHH
Confidence            99887777776654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.65  E-value=9.2e-18  Score=147.86  Aligned_cols=142  Identities=20%  Similarity=0.355  Sum_probs=96.6

Q ss_pred             eEEEccceeeccccccccccccccceec-------------------CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ  137 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i-------------------~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~  137 (255)
                      +|++++|++.|+.      +++++++.+                   .+|+++||+||||||||||+++|+|++.. +|+
T Consensus        37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~  109 (308)
T 1sq5_A           37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE  109 (308)
T ss_dssp             TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred             ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence            5889999999953      669999988                   89999999999999999999999999830 123


Q ss_pred             CccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCC-CCCCCCCccccch
Q 025256          138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP  216 (255)
Q Consensus       138 ~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qr  216 (255)
                      +|+           ..++.+|+++...   ......... ..++.+...+.......+..+..+.. ...|.|+....+|
T Consensus       110 ~G~-----------i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~  174 (308)
T 1sq5_A          110 HRR-----------VELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV  174 (308)
T ss_dssp             CCC-----------EEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred             CCe-----------EEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence            331           2234558775321   000000000 12233344455555566666655554 6678898888888


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCC
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      +..+...+.+++++|+|+|+++.+
T Consensus       175 ~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          175 IPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             ccccceecCCCCEEEECchhhCCC
Confidence            876666667889999999999987

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.64  E-value=3.6e-17  Score=145.48  Aligned_cols=92  Identities=11%  Similarity=0.140  Sum_probs=68.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++++++.+++|++++|+||||||||||+++|+|++.   |++             |. +.++|.....  +....    
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~-------------g~-i~i~~~~e~~--~~~~~----  216 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEE-------------RI-ISIEDTEEIV--FKHHK----  216 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTS-------------CE-EEEESSCCCC--CSSCS----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCC-------------cE-EEECCeeccc--cccch----
Confidence            5699999999999999999999999999999999995   444             44 4444432110  00000    


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~  237 (255)
                        ...++..                         .+||+||++++++|..+|++||+|||++
T Consensus       217 --~~i~~~~-------------------------ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          217 --NYTQLFF-------------------------GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             --SEEEEEC-------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             --hEEEEEe-------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence              0001000                         0899999999999999999999999998

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.64  E-value=2.4e-18  Score=152.29  Aligned_cols=139  Identities=25%  Similarity=0.401  Sum_probs=104.3

Q ss_pred             ceeeccccccccccccccceecCCCe------EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        83 lsk~y~~~~~~i~~l~~vsl~i~~Ge------iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      +++.|++..    ++.+++..+.++.      ++||+||||||||||+++|++++.. +|+.          ...+ ++.
T Consensus        66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~-~i~  129 (321)
T 3tqc_A           66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVE-VIT  129 (321)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEE-EEE
T ss_pred             HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEE-EEe
Confidence            344455544    5677887777665      9999999999999999999999841 1122          2233 488


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC-CCCCCCCCccccchhhhhhhhccCCcEEEEeCC
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp  235 (255)
                      +|+++.....+..    ......+|+|+.++...+.+.++.+..+. .+..|.||++.++|+......+..++|+|+||+
T Consensus       130 ~D~f~~~~~~l~~----~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi  205 (321)
T 3tqc_A          130 TDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGL  205 (321)
T ss_dssp             GGGGBCCHHHHHH----TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred             ecccccchhhhhh----HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcc
Confidence            9998754321110    01123567888899999999999998887 788999999999998766666789999999999


Q ss_pred             CCCCCh
Q 025256          236 YLFLDG  241 (255)
Q Consensus       236 ~~~LD~  241 (255)
                      +.+.|+
T Consensus       206 ~lL~~~  211 (321)
T 3tqc_A          206 NILQTG  211 (321)
T ss_dssp             TTTCCC
T ss_pred             cccccc
Confidence            999986

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.63  E-value=1.2e-16  Score=139.57  Aligned_cols=125  Identities=22%  Similarity=0.282  Sum_probs=87.7

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH------H
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H  177 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~------~  177 (255)
                      -.++.+++|+||+|||||||++.|++++.   +. |.       ....+.++.+|+++...   +..++..+.      .
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence            45689999999999999999999999995   10 10       01234434999987542   222222211      1


Q ss_pred             HhcCCCCCCcHHHHHHHHHhhcCC------CCCCCC----CCCccccchhhhhhhhccCCcEEEEeCCCCCCChH
Q 025256          178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAP----SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~----~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~  242 (255)
                      ...|.+..++...+.+.++.+..+      ....+|    .+||||+||+++|++...+|+|||+||+++++|+.
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            224568888988899999998776      223334    56899999998873332389999999999999974

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.61  E-value=6.3e-17  Score=145.23  Aligned_cols=124  Identities=10%  Similarity=0.025  Sum_probs=75.6

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHH-
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA-  176 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~-  176 (255)
                      ..++|++++|++++|+||||||||||+++|+|+++   |++|+              |.+.+.+.++.  ...+..... 
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~--------------V~l~g~D~~r~--~a~eql~~~~  208 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA  208 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCE--------------EEEeccccccc--chhHHHHHHH
Confidence            46889999999999999999999999999999996   55554              22333222110  000001111 


Q ss_pred             -HHhcCC-CCCCc-HHHHHHHHHhhc----------------CC--CCCCCCCCCccccchhhhhhhhccCCc--EEEEe
Q 025256          177 -HARRGA-PWTFN-PLLLLNCLKNLR----------------NQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD  233 (255)
Q Consensus       177 -~~~~g~-~~~~~-~~~~~~~l~~l~----------------l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililD  233 (255)
                       +...++ ++... ..+...+.+++.                +.  .+..+.+||   +||++++++++.+|+  +|++|
T Consensus       209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD  285 (359)
T 2og2_A          209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD  285 (359)
T ss_dssp             HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred             HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence             111222 32222 112222222221                11  011122466   899999999999999  99999


Q ss_pred             CCCCCCChHHH
Q 025256          234 GNYLFLDGGVW  244 (255)
Q Consensus       234 Ep~~~LD~~~~  244 (255)
                       ||+++|+..+
T Consensus       286 -pttglD~~~~  295 (359)
T 2og2_A          286 -GNTGLNMLPQ  295 (359)
T ss_dssp             -GGGGGGGHHH
T ss_pred             -CCCCCCHHHH
Confidence             9999998755

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.60  E-value=1.1e-16  Score=131.88  Aligned_cols=166  Identities=11%  Similarity=0.025  Sum_probs=88.4

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCccccC-CCCCCC
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFD-SQVKPP  149 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll-----~~~~p~~G~~~~-~~~~~~  149 (255)
                      .+++++|+++.|+. .    ++++  |.+.+|..++|+|+||||||||++.|+|..     .   |+.|.... +.....
T Consensus         2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~   71 (210)
T 1pui_A            2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA   71 (210)
T ss_dssp             ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred             cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence            36899999999973 2    5577  899999999999999999999999999986     4   66665211 000000


Q ss_pred             CeeEEEecCCCCCcCccCCcc--c----ChHHHHHh-cC-----------CCCCCcHHHHHHHHHhhcCCC---CCCCCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAM--E----DPKEAHAR-RG-----------APWTFNPLLLLNCLKNLRNQG---SVYAPS  208 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~--e----~~~~~~~~-~g-----------~~~~~~~~~~~~~l~~l~l~~---~~~~~~  208 (255)
                      ..-.++...|+....  .+..  +    ........ ..           .+.......+..+++..++..   ..+...
T Consensus        72 ~~~~l~Dt~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~  149 (210)
T 1pui_A           72 DGKRLVDLPGYGYAE--VPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADK  149 (210)
T ss_dssp             TTEEEEECCCCC--------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CCEEEEECcCCcccc--cCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccC
Confidence            001111222221100  0000  0    00011100 00           011111122344444444331   234557


Q ss_pred             CCccccch-hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          209 FDHGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~~qr-v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+|++|+ +..+++++.++.+++.|||++++|....+++.+.+.+
T Consensus       150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            89999998 7888888888888899999999999999999988765

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.57  E-value=5.8e-16  Score=155.22  Aligned_cols=134  Identities=16%  Similarity=0.117  Sum_probs=84.0

Q ss_pred             ceEEEcc-----ceeec-cccccccccccccceecCC-------CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcccc
Q 025256           76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (255)
Q Consensus        76 ~~l~i~~-----lsk~y-~~~~~~i~~l~~vsl~i~~-------Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~  142 (255)
                      ++|++++     |++.| ++..    +++|++|++++       |++++|+||||||||||||+| |++.   +      
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~~----v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDDF----IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V------  814 (1022)
T ss_dssp             CCEEEEEECCCC------CCCC----CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H------
T ss_pred             ceEEEEeccccEEEEEecCCce----EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H------
Confidence            4689999     99999 4322    67999999987       899999999999999999999 9874   1      


Q ss_pred             CCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhh
Q 025256          143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       143 ~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~  222 (255)
                           ....|.+++.+..     .+++.+++..   +.|..+.                .......|++++.+ ++++++
T Consensus       815 -----~aqiG~~Vpq~~~-----~l~v~d~I~~---rig~~d~----------------~~~~~stf~~em~~-~a~al~  864 (1022)
T 2o8b_B          815 -----MAQMGCYVPAEVC-----RLTPIDRVFT---RLGASDR----------------IMSGESTFFVELSE-TASILM  864 (1022)
T ss_dssp             -----HHTTTCCEESSEE-----EECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred             -----HhheeEEeccCcC-----CCCHHHHHHH---HcCCHHH----------------HhhchhhhHHHHHH-HHHHHH
Confidence                 1123322333321     1233332210   1221110                00123456777765 899999


Q ss_pred             hccCCcEEEEeCCCCCCChHHH-HHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVW-KDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~-~~l~~ll~~  253 (255)
                      ++.+|+++|+|||+.|+|+... ..++++++.
T Consensus       865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~  896 (1022)
T 2o8b_B          865 HATAHSLVLVDELGRGTATFDGTAIANAVVKE  896 (1022)
T ss_dssp             HCCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence            9999999999999999998764 445566543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.57  E-value=5e-16  Score=138.96  Aligned_cols=146  Identities=12%  Similarity=0.095  Sum_probs=88.6

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++++++.|+..   +.+++++ |.|.+|++++|+||||||||||+++|+|+..   |             +.|. +
T Consensus        44 ~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~-------------~~g~-i  102 (347)
T 2obl_A           44 DPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---A-------------DIIV-L  102 (347)
T ss_dssp             CSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---C-------------SEEE-E
T ss_pred             CCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---C-------------CEEE-E
Confidence            568899999999732   1277999 9999999999999999999999999999984   4             4443 3


Q ss_pred             ecCCCCCcC-cc-CCcccChHHHHHhcCC-CCC-C-cHHHHH------HHHHhhcC-CCC-----CCCCCCCccccchhh
Q 025256          156 PMDGFHLYL-SQ-LDAMEDPKEAHARRGA-PWT-F-NPLLLL------NCLKNLRN-QGS-----VYAPSFDHGVGDPVE  218 (255)
Q Consensus       156 ~~d~~~~~~-~~-l~~~e~~~~~~~~~g~-~~~-~-~~~~~~------~~l~~l~l-~~~-----~~~~~lS~G~~qrv~  218 (255)
                      ...|..... .. ...... ........+ .+. . ....+.      .+.+.+.. +.+     ..+..||+|| |+++
T Consensus       103 ~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~  180 (347)
T 2obl_A          103 ALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG  180 (347)
T ss_dssp             EEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred             EEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence            333321000 00 000000 000000011 110 0 111111      11111111 111     2355789999 8998


Q ss_pred             hhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 ~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|   +.+|++      +.|+|+..+.++.+++.+
T Consensus       181 la---l~~p~~------t~Gldp~~~~~l~~ller  206 (347)
T 2obl_A          181 LA---SGEPDV------RGGFPPSVFSSLPKLLER  206 (347)
T ss_dssp             HH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred             HH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence            88   456766      999999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.56  E-value=2.2e-16  Score=131.07  Aligned_cols=123  Identities=32%  Similarity=0.529  Sum_probs=79.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCC
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~  183 (255)
                      .++|++++|+||||||||||+++|+|++.   |+ |         +..|. +.+|++++....   .++... ....+.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~---~~~~~~-~~~~~~~   80 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRL---LEPRGL-LPRKGAP   80 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHH---HGGGTC-GGGTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHH---HHHhcc-cccCCCC
Confidence            57899999999999999999999999995   21 1         24565 889988653211   111100 0123455


Q ss_pred             CCCcHHHHHHHHHhhcCCCCCCCC------CCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHH
Q 025256          184 WTFNPLLLLNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~~~~------~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~l  250 (255)
                      ..++...+.+.+..+..+.....|      ..|+|++|+++.      .++++|+|+++..+|++.|..+.+.
T Consensus        81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~------~~~~~i~eg~~~l~de~~~~~l~~~  147 (208)
T 3c8u_A           81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP------ECRVAIIEGNYLLFDAPGWRDLTAI  147 (208)
T ss_dssp             GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT------TCCEEEEEESSTTBCSTTGGGGGGT
T ss_pred             chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC------CCcEEEECCceeccCCchhHHHHHh
Confidence            566766666777766555433333      346677777653      2478888888888877655444433

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.55  E-value=2.4e-16  Score=156.08  Aligned_cols=117  Identities=18%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++|++|++++|++++|+||||||||||||+++++..  .+..|..     .+..... +..-..        ..     
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~--~aq~g~~-----vpa~~~~-i~~~d~--------i~-----  720 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI--MAQIGSY-----VPAEEAT-IGIVDG--------IF-----  720 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH--HHHHTCC-----BSSSEEE-EECCSE--------EE-----
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH--HhhcCcc-----ccchhhh-hhHHHH--------HH-----
Confidence            6699999999999999999999999999999987752  0111100     0111111 111000        00     


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHH-HHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD  252 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~-~ll~  252 (255)
                        ...+..            +.    .......||+||++++.++++ +.+|+++|+|||++|+|+.....+. .+++
T Consensus       721 --~~ig~~------------d~----l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~  779 (918)
T 3thx_B          721 --TRMGAA------------DN----IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLE  779 (918)
T ss_dssp             --EEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             --HhCChH------------HH----HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence              011110            00    112346789999999998887 6899999999999999998887776 5554

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.55  E-value=1.8e-16  Score=145.91  Aligned_cols=146  Identities=15%  Similarity=0.124  Sum_probs=92.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEE
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++++++.|+..   +.+|+++ |++.+|++++|+||||||||||+++|+|+..                ++.|. +
T Consensus       130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~----------------~~~G~-i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR----------------ADVIV-V  188 (438)
T ss_dssp             CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC----------------CSEEE-E
T ss_pred             CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC----------------CCeEE-E
Confidence            468899999999732   1277999 9999999999999999999999999999984                44454 4


Q ss_pred             ecCCCC---CcCccCCc-ccChHHHHHhcCC-CCC-CcHHHHHHHHHh-------hcC-CCC-----CCCCCCCccccch
Q 025256          156 PMDGFH---LYLSQLDA-MEDPKEAHARRGA-PWT-FNPLLLLNCLKN-------LRN-QGS-----VYAPSFDHGVGDP  216 (255)
Q Consensus       156 ~~d~~~---~~~~~l~~-~e~~~~~~~~~g~-~~~-~~~~~~~~~l~~-------l~l-~~~-----~~~~~lS~G~~qr  216 (255)
                      .++|..   +..  +.. ........+..++ ++. .......++.++       +.. +.+     ..+..||+|| ||
T Consensus       189 ~~~G~r~~ev~~--~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr  265 (438)
T 2dpy_A          189 GLIGERGREVKD--FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE  265 (438)
T ss_dssp             EEESCCHHHHHH--HHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred             EEeceecHHHHH--HHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence            444431   100  000 0000111111222 221 222222222221       111 110     1134689999 99


Q ss_pred             hhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|   +.+|++      +++||+..+..+.+++.+.
T Consensus       266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~  294 (438)
T 2dpy_A          266 IALA---IGEPPA------TKGYPPSVFAKLPALVERA  294 (438)
T ss_dssp             HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred             HHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence            9988   667877      9999999999999998764

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.54  E-value=1.7e-15  Score=142.47  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=91.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEe
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .+++++++..|+... .  +   ++..+.+|++++|+||||||||||+++++|+..   | .|+          ..  +.
T Consensus       257 ~~~~~~l~~g~~~ld-~--v---L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G~----------~v--i~  314 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLD-E--M---CGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NKE----------RA--IL  314 (525)
T ss_dssp             CCCCCEECCSCHHHH-H--H---TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TTC----------CE--EE
T ss_pred             ccccceeecChHHHH-H--H---hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CCC----------CE--EE
Confidence            355666766664321 1  1   244899999999999999999999999999985   3 231          11  12


Q ss_pred             cCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC--CCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      +....      +. .........+++    +..   ++. ..++  -.+.++..||+||+||+.+++++..+|++||+| 
T Consensus       315 ~~~ee------~~-~~l~~~~~~~g~----~~~---~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-  378 (525)
T 1tf7_A          315 FAYEE------SR-AQLLRNAYSWGM----DFE---EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-  378 (525)
T ss_dssp             EESSS------CH-HHHHHHHHTTSC----CHH---HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred             EEEeC------CH-HHHHHHHHHcCC----CHH---HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence            21111      00 111111112232    211   111 2222  134556689999999999999999999999999 


Q ss_pred             CCCCCChH-----HHHHHHHHHHh
Q 025256          235 NYLFLDGG-----VWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~-----~~~~l~~ll~~  253 (255)
                      |+++||..     .++.+.+++..
T Consensus       379 p~~~Ld~~~~~~~~~~~i~~ll~~  402 (525)
T 1tf7_A          379 SLSALARGVSNNAFRQFVIGVTGY  402 (525)
T ss_dssp             CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHhhCChHHHHHHHHHHHHH
Confidence            99999999     88888888764

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.54  E-value=2.9e-15  Score=128.98  Aligned_cols=113  Identities=13%  Similarity=0.079  Sum_probs=72.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-CccccCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~-~G~~~~~~~~~~~~g~~i  155 (255)
                      +++++++++.    .    +|++++  +++|++++|+||||||||||+++|+|++.   |+ +|+              |
T Consensus         5 ~~~l~~l~~~----~----vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~--------------I   57 (261)
T 2eyu_A            5 IPEFKKLGLP----D----KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYH--------------I   57 (261)
T ss_dssp             -CCGGGSSCC----T----HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCE--------------E
T ss_pred             CCChHHCCCH----H----HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCE--------------E
Confidence            3556777643    2    679998  89999999999999999999999999995   44 454              2


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      ..++..+..  ..  ..      ...+ .+           ..+++..    .      .-|++++++|..+|++|++||
T Consensus        58 ~~~g~~i~~--~~--~~------~~~~v~q-----------~~~gl~~----~------~l~~~la~aL~~~p~illlDE  106 (261)
T 2eyu_A           58 ITIEDPIEY--VF--KH------KKSIVNQ-----------REVGEDT----K------SFADALRAALREDPDVIFVGE  106 (261)
T ss_dssp             EEEESSCCS--CC--CC------SSSEEEE-----------EEBTTTB----S------CHHHHHHHHHHHCCSEEEESC
T ss_pred             EEcCCccee--ec--CC------cceeeeH-----------HHhCCCH----H------HHHHHHHHHHhhCCCEEEeCC
Confidence            222221100  00  00      0000 00           0111110    1      127999999999999999999


Q ss_pred             CCCCCChHHHHHHHHH
Q 025256          235 NYLFLDGGVWKDVSSM  250 (255)
Q Consensus       235 p~~~LD~~~~~~l~~l  250 (255)
                      |+   |+.....+.+.
T Consensus       107 p~---D~~~~~~~l~~  119 (261)
T 2eyu_A          107 MR---DLETVETALRA  119 (261)
T ss_dssp             CC---SHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHH
Confidence            99   98876655443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.54  E-value=6.3e-15  Score=128.48  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|+++++.+++|++++|+||||||||||++.|+|.+.
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999995

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.53  E-value=5.7e-16  Score=136.04  Aligned_cols=138  Identities=14%  Similarity=0.093  Sum_probs=61.4

Q ss_pred             ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh-hcccCCCCccccCCCCCC-----CCeeEE
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKP-----PDVATV  154 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl-l~~~~p~~G~~~~~~~~~-----~~~g~~  154 (255)
                      +||++.|++..    ++++++|+|      +|+||||+|||||+++|+|. +.   |++|..+.+....     ...+..
T Consensus         2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE   68 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred             CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence            47899998755    779999988      99999999999999999987 54   7777212221111     112222


Q ss_pred             EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeC
Q 025256          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       155 i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDE  234 (255)
                      +..++...   .+++.+.+.+.... ...+.+     ..+.+.+....+.++..+|+|++||+.++++++    ++++||
T Consensus        69 ~q~~~~~~---~ltv~Dt~g~~~~~-~~~e~~-----~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde  135 (301)
T 2qnr_A           69 IEERGVKL---RLTVVDTPGYGDAI-NCRDCF-----KTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS  135 (301)
T ss_dssp             EC---CCE---EEEEEEEC------------C-----TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred             ecCCCccc---Ccchhhhhhhhhhc-CcHHHH-----HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence            22222211   24454444331110 000011     111111111113445678999999999998875    999999


Q ss_pred             CCCC-CChHHH
Q 025256          235 NYLF-LDGGVW  244 (255)
Q Consensus       235 p~~~-LD~~~~  244 (255)
                      |+.. ||+...
T Consensus       136 Pt~~~Ld~~~~  146 (301)
T 2qnr_A          136 PFGHGLKPLDV  146 (301)
T ss_dssp             SSSSSCCHHHH
T ss_pred             CcccCCCHHHH
Confidence            9985 999765

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.51  E-value=1.1e-16  Score=131.59  Aligned_cols=46  Identities=9%  Similarity=0.021  Sum_probs=38.2

Q ss_pred             CCCccccchh-hhhh---hhccCCcEEEEeC--CCCCCChHHHHHHHHHHHh
Q 025256          208 SFDHGVGDPV-EDDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       208 ~lS~G~~qrv-~~a~---~l~~~~~ililDE--p~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+||+.++ ++++   |+..+|+++|+||  |+..+|+..++.+.++++.
T Consensus        83 ~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~  134 (189)
T 2i3b_A           83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST  134 (189)
T ss_dssp             CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred             cchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence            5788888887 3444   5788999999999  8988999999999998864

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.51  E-value=3.3e-16  Score=149.71  Aligned_cols=153  Identities=9%  Similarity=0.038  Sum_probs=71.9

Q ss_pred             ceEEEccceeecccccccccccccc----------ceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCccccCC
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKASSFDS  144 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~v----------sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p-~~G~~~~~  144 (255)
                      +.+++++|++.|+...+.++  +.+          +++++.   ++|+||||||||||+++|+|++.   | ++|.+   
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~v---   77 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIV---   77 (608)
T ss_dssp             -----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------C---
T ss_pred             chhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeE---
Confidence            35788999999986433222  322          355553   99999999999999999999985   6 56762   


Q ss_pred             CCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh
Q 025256          145 QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       145 ~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                                 ..+|..+.........   ..+...++ ++........++.+++..........-.+...+++.++.+.
T Consensus        78 -----------t~~g~~i~~~~~~~~~---~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~~  143 (608)
T 3szr_A           78 -----------TRCPLVLKLKKLVNED---KWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEISS  143 (608)
T ss_dssp             -----------CCSCEEEEEEECSSSS---CCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEEE
T ss_pred             -----------EEcCEEEEEecCCccc---cceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhcC
Confidence                       2222111000000000   00011222 22221112223333322210000000112234566666777


Q ss_pred             ccCCcEEEEeCC------CCCCChHHHHHHHHHHHh
Q 025256          224 GLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~ililDEp------~~~LD~~~~~~l~~ll~~  253 (255)
                      ...|+++|+|||      +++||+..++.+.+++..
T Consensus       144 ~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~  179 (608)
T 3szr_A          144 RDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK  179 (608)
T ss_dssp             SSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred             CCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence            788999999999      999999999999998875

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.50  E-value=6.9e-14  Score=124.58  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             CCCCCCCccccc------hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       204 ~~~~~lS~G~~q------rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ..+..||+||+|      |+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~  299 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  299 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            345689999999      56778888889999999999999999999999998865

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.50  E-value=2.9e-15  Score=133.50  Aligned_cols=157  Identities=34%  Similarity=0.584  Sum_probs=119.2

Q ss_pred             cccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhcccC--------------------------------------
Q 025256           96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW--------------------------------------  135 (255)
Q Consensus        96 ~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~~~~--------------------------------------  135 (255)
                      +++.+++.+++|++  ++|+|++||||||++++|++.+...+                                      
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i   90 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM   90 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence            45888999999988  99999999999999999999874221                                      


Q ss_pred             -CCCccccCC------------------C-----------------------C-CC---C---CeeEEEecCCCCCcCcc
Q 025256          136 -PQKASSFDS------------------Q-----------------------V-KP---P---DVATVLPMDGFHLYLSQ  166 (255)
Q Consensus       136 -p~~G~~~~~------------------~-----------------------~-~~---~---~~g~~i~~d~~~~~~~~  166 (255)
                       ...|+.|..                  .                       . ..   +   ....++++|||+.++..
T Consensus        91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~  170 (359)
T 2ga8_A           91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC  170 (359)
T ss_dssp             HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred             HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence             001110000                  0                       0 00   1   13456899999988777


Q ss_pred             CCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-----------------------------CCCCCCCCCccccchh
Q 025256          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       167 l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------------------------~~~~~~~lS~G~~qrv  217 (255)
                      ++.+.+......++|.|+.++...+.+.++.|.-+                             ..+.+|.||+...+++
T Consensus       171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~  250 (359)
T 2ga8_A          171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT  250 (359)
T ss_dssp             HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred             HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence            77666666667789999999999988888877554                             3567889999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHH
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~  252 (255)
                      .....+...++++|+|+..++++...|..+.+++|
T Consensus       251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D  285 (359)
T 2ga8_A          251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA  285 (359)
T ss_dssp             EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred             CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence            87777776789999999989999778889999998

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.49  E-value=3.9e-14  Score=140.59  Aligned_cols=115  Identities=13%  Similarity=0.033  Sum_probs=70.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++|++|++++|++++|+||||||||||||++++..-  .+..|..      .|..+..+..-+.        .      
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~--------i------  708 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC--------I------  708 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE--------E------
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH--------H------
Confidence            6699999999999999999999999999999955431  0111100      0111111111000        0      


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp~~~LD~~~~~~l-~~ll~  252 (255)
                       ..++|.                  . +.....+|.+++++..+++++  +.+|+++|+|||+.|+|+.....+ +.+++
T Consensus       709 -~~~ig~------------------~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~  768 (934)
T 3thx_A          709 -LARVGA------------------G-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE  768 (934)
T ss_dssp             -EEECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred             -HHhcCc------------------h-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence             001111                  1 111234677777777777777  889999999999999999887776 44443

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.47  E-value=4.5e-14  Score=137.77  Aligned_cols=112  Identities=24%  Similarity=0.257  Sum_probs=74.1

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++|++|+   |++++|+||||||||||+|+|+|+..  .++.|..+     +..... +.+-... +    +       
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~v-----pa~~~~-i~~v~~i-~----~-------  624 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFV-----PAEEAH-LPLFDGI-Y----T-------  624 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCB-----SSSEEE-ECCCSEE-E----E-------
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCcee-----ehhccc-eeeHHHh-h----c-------
Confidence            67999998   99999999999999999999999862  03444321     111111 1110000 0    0       


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhh--ccCCcEEEEeCC---CCCCChHHH-HHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS  249 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l--~~~~~ililDEp---~~~LD~~~~-~~l~~  249 (255)
                         ..+..            +++.       ..+|.++++++.+++++  +.+|+++|+|||   |+++|.... ..+.+
T Consensus       625 ---~~~~~------------d~l~-------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~  682 (765)
T 1ewq_A          625 ---RIGAS------------DDLA-------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE  682 (765)
T ss_dssp             ---ECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             ---cCCHH------------HHHH-------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence               01110            0111       13688999999999988  999999999999   999998765 46776


Q ss_pred             HHH
Q 025256          250 MFD  252 (255)
Q Consensus       250 ll~  252 (255)
                      .+.
T Consensus       683 ~L~  685 (765)
T 1ewq_A          683 ALH  685 (765)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.47  E-value=6.9e-17  Score=134.02  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=25.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++.|  .+|++|++++|+||||||||||+|+|+|++
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4577  689999999999999999999999999998

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.47  E-value=3.9e-14  Score=129.52  Aligned_cols=140  Identities=11%  Similarity=0.000  Sum_probs=74.8

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc---ccCCCCCCC-C-
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPP-D-  150 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~---~~~~~~~~~-~-  150 (255)
                      .+|+++||++.|++..    ++++++|+|      +|+|+||||||||+++|+|...   ++.|.   ......... . 
T Consensus        10 ~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~~   76 (418)
T 2qag_C           10 GYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVEQ   76 (418)
T ss_dssp             -----CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEEE
T ss_pred             CcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeeee
Confidence            4689999999998754    779999997      9999999999999999999874   44432   111100000 0 


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCc--
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK--  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~--  228 (255)
                      .+.++..++..   ..+++.+++.+.....   ..   ..+..+.+.+.       ..|+.++++|++++++++.+|+  
T Consensus        77 i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~---~~---~~~~~i~~~i~-------~~~~~~l~qr~~IaRal~~d~~~~  140 (418)
T 2qag_C           77 SKVLIKEGGVQ---LLLTIVDTPGFGDAVD---NS---NCWQPVIDYID-------SKFEDYLNAESRVNRRQMPDNRVQ  140 (418)
T ss_dssp             EECC------C---EEEEEEECC-----------------CHHHHHHHH-------HHHHHHTTTSCC-CCCCCCCC-CC
T ss_pred             EEEEEecCCcc---cceeeeechhhhhhcc---ch---hhHHHHHHHHH-------HHHHHHHHHHHHHHHHhccCCCee
Confidence            11101111111   1245555543322110   00   01111222221       1345577889999999999999  


Q ss_pred             -EEEEeCCC-CCCChHHH
Q 025256          229 -VVIVDGNY-LFLDGGVW  244 (255)
Q Consensus       229 -ililDEp~-~~LD~~~~  244 (255)
                       +|++|||+ .++|+...
T Consensus       141 vlL~ldePt~~~L~~~d~  158 (418)
T 2qag_C          141 CCLYFIAPSGHGLKPLDI  158 (418)
T ss_dssp             EEEEECCC-CCSCCHHHH
T ss_pred             EEEEEecCcccCCCHHHH
Confidence             99999999 69998664

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.46  E-value=3.7e-14  Score=127.31  Aligned_cols=46  Identities=15%  Similarity=0.069  Sum_probs=44.0

Q ss_pred             CCCccccchhhhhhhhc---------cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          208 SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       208 ~lS~G~~qrv~~a~~l~---------~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+||+||+++|++|+         .+|+|||+||||++||+..++.+.+++..
T Consensus       265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~  319 (359)
T 2o5v_A          265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS  319 (359)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence            59999999999999999         89999999999999999999999999865

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.45  E-value=1.6e-14  Score=115.19  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=50.9

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~  144 (255)
                      ++..++++.|++..    +++++||++++|++++|+||||||||||+|+|+|++    |++|+ .+++
T Consensus         8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g   67 (158)
T 1htw_A            8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPT   67 (158)
T ss_dssp             ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCT
T ss_pred             cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECC
Confidence            44567888997643    779999999999999999999999999999999998    88898 3444

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.42  E-value=3e-13  Score=116.97  Aligned_cols=131  Identities=15%  Similarity=0.068  Sum_probs=79.3

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      .+++|++++|+||||||||||++.+++.+.     .|..+.+.... ..+.++.+....      +. +.........+.
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~-~~~~v~~~~~e~------~~-~~~~~r~~~~g~   92 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGEL-PTGPVIYLPAED------PP-TAIHHRLHALGA   92 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCC-CCCCEEEEESSS------CH-HHHHHHHHHHHT
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccC-CCccEEEEECCC------CH-HHHHHHHHHHHh
Confidence            377999999999999999999999999774     34422221111 111112222211      10 111111112222


Q ss_pred             CCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCC--CCChHHH---HHHHHHH
Q 025256          183 PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF  251 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~--~LD~~~~---~~l~~ll  251 (255)
                        ..+......+++.+.+.  ....+..+|+|+.+++   ++++.+|++||+|||++  ++|+...   .++.+.|
T Consensus        93 --~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L  163 (279)
T 1nlf_A           93 --HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM  163 (279)
T ss_dssp             --TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred             --hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence              23334456677777664  3456778999997765   46777999999999999  8887544   4444444

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.39  E-value=1.9e-13  Score=113.88  Aligned_cols=113  Identities=19%  Similarity=0.185  Sum_probs=66.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      -+++|++++|+||||||||||+++|+|++.   +..|..      ....+. +.+++....    . .+.........++
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~~~~~~~----~-~~~i~~~~~~~~~   85 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWIDTENTF----R-PERIREIAQNRGL   85 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEEESSSCC----C-HHHHHHHHHHTTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEEECCCCC----C-HHHHHHHHHHcCC
Confidence            588999999999999999999999999764   322210      012223 555554211    1 1122233333443


Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccc-hhhhhhhhc-------cCCcEEEEeCCCCCCChH
Q 025256          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD-PVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~q-rv~~a~~l~-------~~~~ililDEp~~~LD~~  242 (255)
                      .    .   .++++++.+..     .++.++++ .+..+..++       .+|+++++|||++++|+.
T Consensus        86 ~----~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~  141 (231)
T 4a74_A           86 D----P---DEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  141 (231)
T ss_dssp             C----H---HHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred             C----H---HHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence            2    1   16677765432     23333322 233333333       489999999999999873

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.38  E-value=3.5e-14  Score=133.51  Aligned_cols=144  Identities=10%  Similarity=0.053  Sum_probs=83.5

Q ss_pred             eEEEccceeeccccccccccccccce-ecCCCeEEEEECCCCCcHHHHHHH--HHHhhcccCCCCccccCCCCCCCCeeE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVAT  153 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~--L~gll~~~~p~~G~~~~~~~~~~~~g~  153 (255)
                      +++.+++.+.+++..    +|++++| .+++|++++|+||||||||||+++  ++|+++   |++             |.
T Consensus        12 ~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~-------------g~   71 (525)
T 1tf7_A           12 NSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDE-------------PG   71 (525)
T ss_dssp             --CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCC-------------CE
T ss_pred             CccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCC-------------CE
Confidence            466667766665543    7899999 999999999999999999999999  789984   333             43


Q ss_pred             EEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---CCCC-C---CCCCCccccchhhhhhhh-cc
Q 025256          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGSV-Y---APSFDHGVGDPVEDDILV-GL  225 (255)
Q Consensus       154 ~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---~~~~-~---~~~lS~G~~qrv~~a~~l-~~  225 (255)
                       +.+++....       .........+++.  ++  .... ..++..   .... .   ...++.+. ....+..+| ..
T Consensus        72 -i~v~g~~~~-------~~~~~~~~~~g~~--~q--~~~~-~~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~g  137 (525)
T 1tf7_A           72 -VFVTFEETP-------QDIIKNARSFGWD--LA--KLVD-EGKLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQKY  137 (525)
T ss_dssp             -EEEESSSCH-------HHHHHHHGGGTCC--HH--HHHH-TTSEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHHH
T ss_pred             -EEEEEeCCH-------HHHHHHHHHcCCC--hH--Hhhc-cCcEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHHc
Confidence             455554210       1111222334431  11  1100 001111   0000 0   01111111 111233444 36


Q ss_pred             CCcEEEEeCCCCC-----CChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLF-----LDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~-----LD~~~~~~l~~ll~~~  254 (255)
                      +|+++++|||++.     +|+..++++.+++...
T Consensus       138 ~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l  171 (525)
T 1tf7_A          138 RARRVSIDSVTSVFQQYDASSVVRRELFRLVARL  171 (525)
T ss_dssp             TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            8999999999985     5889999999988653

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.38  E-value=6.5e-14  Score=116.63  Aligned_cols=134  Identities=9%  Similarity=0.043  Sum_probs=76.2

Q ss_pred             cccccce-ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      .|+++.. .+++|++++|+||||||||||++.|++...   +..|             .++.++..      .+. +...
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-------------~v~~~~~~------~~~-~~~~   67 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-------------PCIYVTTE------ESR-DSII   67 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-------------CEEEEESS------SCH-HHHH
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-------------eEEEEEcc------cCH-HHHH
Confidence            5688887 799999999999999999999999998874   2222             11211111      011 1111


Q ss_pred             HHHHhcCCC-CCCcHHHHHHHHHhhc--CCCCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCC--ChHHHHHH
Q 025256          175 EAHARRGAP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV  247 (255)
Q Consensus       175 ~~~~~~g~~-~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~L--D~~~~~~l  247 (255)
                      ......++. +...... ..+++.+.  ..........|.++.++...+.+...+|+  +||+|||++++  |+..+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~  146 (235)
T 2w0m_A           68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI  146 (235)
T ss_dssp             HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred             HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence            111123321 1110000 00000000  00001112337777776666666667999  99999999777  98887787


Q ss_pred             HHHHHh
Q 025256          248 SSMFDE  253 (255)
Q Consensus       248 ~~ll~~  253 (255)
                      .+.|..
T Consensus       147 ~~~l~~  152 (235)
T 2w0m_A          147 SYYLKR  152 (235)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.35  E-value=1.5e-13  Score=134.70  Aligned_cols=116  Identities=14%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      +++|++|+ ++|++++|+||||||||||||+|+|+...  ...|..+     +..... +.+-...              
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~v-----pa~~~~-i~~~~~i--------------  653 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYV-----PAQKVE-IGPIDRI--------------  653 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCB-----SSSEEE-ECCCCEE--------------
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCccc-----chhccc-ceeHHHH--------------
Confidence            67999999 99999999999999999999999998620  1122100     001111 1110000              


Q ss_pred             HHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHH-HHHHH
Q 025256          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l-~~ll~  252 (255)
                       ....+..            +++.    .....|+.++++ ++.+...+.+|+++|+|||+.|+|+.....+ +++++
T Consensus       654 -~~~~~~~------------d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~  713 (800)
T 1wb9_A          654 -FTRVGAA------------DDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAE  713 (800)
T ss_dssp             -EEEEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHH
T ss_pred             -HhhCCHH------------HHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHH
Confidence             0011110            0111    112346667654 4444556789999999999999998766554 44444

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.32  E-value=1.7e-12  Score=116.33  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=32.5

Q ss_pred             cccccce-------ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl-------~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++++.+       .+.+|++++|+||||||||||+++|+|+++
T Consensus       105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4566665       678899999999999999999999999996

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.32  E-value=6.9e-13  Score=118.67  Aligned_cols=121  Identities=19%  Similarity=0.170  Sum_probs=77.9

Q ss_pred             ccccc-ceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~v-sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      .|+.+ .+.+++|++++|+||||||||||++.|++.... .|++|.         ..|.++.+++....    . .+...
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~Gg---------~~G~vi~i~~e~~~----~-~~~i~  183 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEGG---------LNGSVIWIDTENTF----R-PERIR  183 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTS---------CSCEEEEEESSSCC----C-HHHHH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcCC---------CCCeEEEEeCCCCC----C-HHHHH
Confidence            34554 588999999999999999999999999999830 033320         01344566665321    0 11122


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhc-------cCCcEEEEeCCCCCCChH
Q 025256          175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~-------~~~~ililDEp~~~LD~~  242 (255)
                      ......++    +.   .++++++.+...    ..+.++.+++..+.+++       .+|++||+|||++++|+.
T Consensus       184 ~i~q~~~~----~~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          184 EIAQNRGL----DP---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             HHHHTTTC----CH---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             HHHHHcCC----CH---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            22222222    11   256666654321    12467888888888887       689999999999999985

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.31  E-value=3.8e-13  Score=118.16  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=28.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +|++++|+||||||||||+++|+|+++   |++|+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~  132 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK  132 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence            699999999999999999999999996   65553

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.29  E-value=1.1e-13  Score=124.39  Aligned_cols=133  Identities=9%  Similarity=0.042  Sum_probs=75.0

Q ss_pred             ccccceecCC--CeEEEEECCCCCcHHHHHHHHHHhhcccCCCC----ccc-cCCCCCCCCeeEEEecCCCCCcCccCCc
Q 025256           97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----ASS-FDSQVKPPDVATVLPMDGFHLYLSQLDA  169 (255)
Q Consensus        97 l~~vsl~i~~--Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~----G~~-~~~~~~~~~~g~~i~~d~~~~~~~~l~~  169 (255)
                      ...|+++|.+  |+.++|+||||||||||+++|+|++.   |++    |++ +++.           .++....   ++.
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~---~~~  220 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQA---MQY  220 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTS---SCT
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCccc---CCh
Confidence            3679999999  99999999999999999999999996   665    431 1100           0111110   111


Q ss_pred             ccChHHHHHhcCC-CCCCcHHHHHHHHHhhcCCCC----CCCCCCCccccchhhhhhhh-ccCCcEEEEeC---CC----
Q 025256          170 MEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY----  236 (255)
Q Consensus       170 ~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~----~~~~~lS~G~~qrv~~a~~l-~~~~~ililDE---p~----  236 (255)
                      .+ ..    ..++ ++.. .....++.+++.+...    ..+...++|++++..++.++ ..+|+++++||   |+    
T Consensus       221 ~~-~~----~I~~~~q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g  294 (365)
T 1lw7_A          221 SD-YP----QMALGHQRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDG  294 (365)
T ss_dssp             TT-HH----HHHHHHHHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----
T ss_pred             hH-HH----HHHHHHHHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCC
Confidence            11 00    0111 1100 0111233333332211    01113355667777666665 46899999999   65    


Q ss_pred             --CCCChHHHHHHHHHHH
Q 025256          237 --LFLDGGVWKDVSSMFD  252 (255)
Q Consensus       237 --~~LD~~~~~~l~~ll~  252 (255)
                        +++|+..+..+.++|.
T Consensus       295 ~~~sld~~~r~~l~~~l~  312 (365)
T 1lw7_A          295 LRSLGSQKQRQQFQQLLK  312 (365)
T ss_dssp             ------CCSHHHHHHHHH
T ss_pred             CcCCccHHHHHHHHHHHH
Confidence              5899999999988884

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.27  E-value=2.6e-13  Score=124.04  Aligned_cols=142  Identities=11%  Similarity=0.048  Sum_probs=84.3

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC---CCee
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---PDVA  152 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~---~~~g  152 (255)
                      .++++++.+.|+...    +|+++ + ..+|++++|+|||||||||||++|+|+++   |++|+ .+.++...   +...
T Consensus       143 ~~~l~~Lg~~~~~~~----~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~  213 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHD----NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG  213 (418)
T ss_dssp             CCCGGGSCCCHHHHH----HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred             CCCHHHcCCCHHHHH----HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence            467888988887643    66888 5 38899999999999999999999999997   88888 33332211   1111


Q ss_pred             EEEecC---CCCC---------cCccC----------CcccChHHHHHhcCC-----CCCCcHHHHHHHHHhhcCCCCCC
Q 025256          153 TVLPMD---GFHL---------YLSQL----------DAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVY  205 (255)
Q Consensus       153 ~~i~~d---~~~~---------~~~~l----------~~~e~~~~~~~~~g~-----~~~~~~~~~~~~l~~l~l~~~~~  205 (255)
                      . +.+.   ++..         ..++.          ++.+....  ...|.     ....+.....+.+..+++.....
T Consensus       214 q-~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a--~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~  290 (418)
T 1p9r_A          214 Q-TQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQA--SLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLI  290 (418)
T ss_dssp             E-EECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHH--HHTTCEEEEEECCSSSHHHHHHHHHHTCCHHHH
T ss_pred             e-EEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHH--HHhCCCcccccchhhHHHHHHHHHHcCCcHHHH
Confidence            1 1111   1100         00001          11111111  11121     01112233344566666554444


Q ss_pred             CCCCCccccchhhhhhhhccCCcEEEE
Q 025256          206 APSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       206 ~~~lS~G~~qrv~~a~~l~~~~~ilil  232 (255)
                      ...||+|++||  ++++++.+|++..-
T Consensus       291 ~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          291 SSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            55799999999  88999999998753

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.26  E-value=9e-13  Score=106.39  Aligned_cols=105  Identities=13%  Similarity=0.059  Sum_probs=57.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----C-
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----A-  182 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g----~-  182 (255)
                      ++++|+|+||||||||++.|+|++.   |+ |         ...|. |.+++..+..  ++............+    + 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~-g---------~~~G~-I~~dg~~i~~--~~~~~~d~~r~~~ig~~~~~~   66 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR---ER-G---------LRVAV-VKRHAHGDFE--IDKEGKDSWKIYNSGADVVIA   66 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH---HT-T---------CCEEE-EEC--------------CHHHHHHHHTCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh---hc-C---------CceEE-EEEcCccccc--CCccchhHHHHHhcCCceEEE
Confidence            5899999999999999999999995   32 0         01455 5666654221  110000111112233    1 


Q ss_pred             CCCC-------cHH---HHHHHHHh-hcCCCCCC-CCCCCccccchhhhhhhhccCCcE
Q 025256          183 PWTF-------NPL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       183 ~~~~-------~~~---~~~~~l~~-l~l~~~~~-~~~lS~G~~qrv~~a~~l~~~~~i  229 (255)
                      .++.       +.+   .+.++++. +. +.+.. ...||+||+||+++||+++.+|++
T Consensus        67 ~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           67 SPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             CSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             CCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence            2211       011   23344544 43 32221 124999999999999999998876

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.23  E-value=4.7e-14  Score=119.82  Aligned_cols=42  Identities=10%  Similarity=-0.040  Sum_probs=33.5

Q ss_pred             CCCCCCccccchhhhhhhh-ccCCcEEEEe----CCCCCCChHHHHHHHHHHHh
Q 025256          205 YAPSFDHGVGDPVEDDILV-GLQHKVVIVD----GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l-~~~~~ililD----Ep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+..+||    |+   +++ +.+|+++++|    ||++++|+...+.+.+.+..
T Consensus       149 ~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~  195 (246)
T 2bbw_A          149 WIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ  195 (246)
T ss_dssp             EEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred             CCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence            3456777    44   456 8899999999    99999999988888877754

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.21  E-value=2.8e-11  Score=99.97  Aligned_cols=110  Identities=16%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             cccccce-ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChH
Q 025256           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~vsl-~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~  174 (255)
                      .|+.+.. .+++|++++|+||||||||||++.|++ ..                ....  +.++....    .+. +...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~----------------~~~v--~~i~~~~~----~~~-~~~~   63 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS----------------GKKV--AYVDTEGG----FSP-ERLV   63 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH----------------CSEE--EEEESSCC----CCH-HHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc----------------CCcE--EEEECCCC----CCH-HHHH
Confidence            4566655 689999999999999999999999999 31                1112  22322210    111 1111


Q ss_pred             HHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccc--cchhhhhhhhccC-CcEEEEeCCCCCCChH
Q 025256          175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG  242 (255)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~--~qrv~~a~~l~~~-~~ililDEp~~~LD~~  242 (255)
                      ......+.    +.   .++++++.+      ...+.++  +++++.+++++.+ |+++|+|||++++|..
T Consensus        64 ~~~~~~~~----~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           64 QMAETRGL----NP---EEALSRFIL------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             HHHHTTTC----CH---HHHHHHEEE------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             HHHHhcCC----Ch---HHHhhcEEE------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence            11122221    11   123444332      2334444  4567777788775 9999999999999863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.20  E-value=2.4e-11  Score=97.87  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.3

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+.+|+.++|.||||+|||||++.|++.+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46677899999999999999999999999984

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.19  E-value=1.7e-11  Score=107.13  Aligned_cols=131  Identities=11%  Similarity=-0.012  Sum_probs=79.3

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEec
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      +.++++++.|+...      ++++|+  +|++++|+|+||+||||++..|++.+.   +..             +. +.+
T Consensus        77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~-------------~~-v~l  131 (295)
T 1ls1_A           77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKG-------------RR-PLL  131 (295)
T ss_dssp             HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTT-------------CC-EEE
T ss_pred             HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcC-------------Ce-EEE
Confidence            45677888886521      678888  899999999999999999999999995   222             22 222


Q ss_pred             CCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCC-C
Q 025256          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y  236 (255)
Q Consensus       158 d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp-~  236 (255)
                      .+.+...   +     ...            ..+..+.+..++..-......+-.+-+|.+++.+...+++++|+|+| +
T Consensus       132 ~~~d~~~---~-----~~~------------~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~  191 (295)
T 1ls1_A          132 VAADTQR---P-----AAR------------EQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR  191 (295)
T ss_dssp             EECCSSC---H-----HHH------------HHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred             ecCCccc---H-----hHH------------HHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            2222111   0     000            00111223333221000001111223466677766679999999998 9


Q ss_pred             CCCChHHHHHHHHHHHh
Q 025256          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      .++|.....++.++.+.
T Consensus       192 ~~~d~~~~~~l~~~~~~  208 (295)
T 1ls1_A          192 LQIDEPLMGELARLKEV  208 (295)
T ss_dssp             SSCCHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhhh
Confidence            99998888887776553

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.17  E-value=9.1e-12  Score=111.86  Aligned_cols=54  Identities=26%  Similarity=0.396  Sum_probs=43.7

Q ss_pred             EEccceee---ccccccccc-------cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        79 ~i~~lsk~---y~~~~~~i~-------~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++++++.   |+.....++       ++++++|.+++|++++|+||||||||||+++|+|++.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            56777777   753212222       3499999999999999999999999999999999995

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.17  E-value=4.8e-11  Score=108.96  Aligned_cols=157  Identities=10%  Similarity=0.010  Sum_probs=83.1

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhcccCCCCccccCC---CCCCCC
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS---QVKPPD  150 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~---~~~~~~  150 (255)
                      ..+++.+ ++.|++.  .   ++++||++++|++  ++|+||||||||||+++|+|+.-     .|.....   ......
T Consensus        15 ~~l~~~~-~~~y~~~--~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~   83 (427)
T 2qag_B           15 RTVPLAG-HVGFDSL--P---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS   83 (427)
T ss_dssp             --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred             ceEEEee-EEEECCe--e---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence            4566777 8899762  2   6999999999999  99999999999999999999851     1210000   000011


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCc------------HHHHHHHHHhh-cCCC------CCCC-----
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN------------PLLLLNCLKNL-RNQG------SVYA-----  206 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~------------~~~~~~~l~~l-~l~~------~~~~-----  206 (255)
                      .+. +.++....  ..+++.+++.+       ....+            ...+...++.. +...      +..+     
T Consensus        84 i~~-v~Q~~~l~--~~ltv~D~~~~-------g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~  153 (427)
T 2qag_B           84 NTY-DLQESNVR--LKLTIVSTVGF-------GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLY  153 (427)
T ss_dssp             EEE-EEEC--CE--EEEEEEEEECC-------CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEE
T ss_pred             EEE-EeecCccc--cccchhhhhhh-------hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEE
Confidence            222 33322111  12444443322       11111            11222333332 2211      1111     


Q ss_pred             --CCCCccccc-hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          207 --PSFDHGVGD-PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 --~~lS~G~~q-rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                        ...+.|... -+.++++|..+.+||++|+++..|.+.....+.+.+.+
T Consensus       154 fI~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~  203 (427)
T 2qag_B          154 FIAPTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS  203 (427)
T ss_dssp             EECCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred             EEeCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence              011122221 16788888889999999999999998777777666653

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.14  E-value=7.8e-11  Score=92.73  Aligned_cols=32  Identities=25%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++++     +|+.++|+||||+|||||+++|++.+.
T Consensus        30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            45555     899999999999999999999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.14  E-value=1.4e-11  Score=99.93  Aligned_cols=29  Identities=34%  Similarity=0.432  Sum_probs=26.3

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+++|++++|+||||||||||+++|++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~   33 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANLP   33 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhcc
Confidence            47789999999999999999999999973

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.13  E-value=4.2e-11  Score=100.28  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -..++|++++|+||||||||||+++|+|+++
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3578999999999999999999999999983

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.12  E-value=5.4e-11  Score=110.27  Aligned_cols=45  Identities=29%  Similarity=0.316  Sum_probs=42.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~  144 (255)
                      +|+++||++++ ++++|+||||||||||+++|+|++.   |++|+ .+++
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g   64 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRN   64 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCC
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECC
Confidence            77999999999 9999999999999999999999998   99999 4555

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.11  E-value=5.1e-12  Score=112.51  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=54.1

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .|++++++++++.|+...    ++++++|++.+|++++|+||||||||||+++|+|++.   |+.|+
T Consensus        26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~   85 (337)
T 2qm8_A           26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK   85 (337)
T ss_dssp             HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred             HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence            466789999999997644    6799999999999999999999999999999999997   77777

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.11  E-value=1.2e-10  Score=102.26  Aligned_cols=99  Identities=14%  Similarity=0.086  Sum_probs=65.9

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHH
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~  178 (255)
                      .+++...+|++++|+|||||||||+++.|++.+.   +..|           ...++..|-+   +   .     ..   
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-----------kV~lv~~D~~---r---~-----~a---  147 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-----------SVVLAAADTF---R---A-----AA---  147 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-----------CEEEEEECTT---C---H-----HH---
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-----------EEEEEccccc---c---H-----HH---
Confidence            3566678899999999999999999999999995   2222           1111222221   1   0     00   


Q ss_pred             hcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchh---hhhhhhccCCcEEEEeCCCC
Q 025256          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~~a~~l~~~~~ililDEp~~  237 (255)
                               .+.+..+.+.+++..   ++..|+|+.+++   ++++++..+++++|+|+|..
T Consensus       148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                     011223344444331   346688999998   78888899999999999865

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.10  E-value=1.1e-10  Score=105.30  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=30.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|++++  +++|++++|+||||||||||+++|+|++.
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            345554  78999999999999999999999999995

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.09  E-value=4.2e-11  Score=94.28  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=46.1

Q ss_pred             CCCCCCCCccccchhhhh------hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~~qrv~~a------~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+..|||||+||+++|      ++++.+|+++|+||||++||+..++.+.+++.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  108 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  108 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            456679999999999876      789999999999999999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.09  E-value=3.5e-12  Score=113.16  Aligned_cols=116  Identities=12%  Similarity=0.099  Sum_probs=64.2

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      ..++|++++|+||||||||||+++|+|+++   |+.|+              +.+.+.+.++  ....+.........++
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~--------------V~l~g~D~~r--~~a~eql~~~~~~~gv  185 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFS--------------VVIAASDTFR--AGAIEQLEEHAKRIGV  185 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC--------------EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCE--------------EEEEeecccc--cchHHHHHHHHHHcCc
Confidence            447899999999999999999999999996   55543              3333333222  1222222333344552


Q ss_pred             ---CCCCcHHHHHHHHHhhcCCC----CCCCCCCCcc-------ccchhhhhhhhccCCcEEEEeCCCC
Q 025256          183 ---PWTFNPLLLLNCLKNLRNQG----SVYAPSFDHG-------VGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       183 ---~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G-------~~qrv~~a~~l~~~~~ililDEp~~  237 (255)
                         ++.....+...+.+++....    +.-+-...|.       +.+...+++++..++.++++|.++.
T Consensus       186 ~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~  254 (328)
T 3e70_C          186 KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG  254 (328)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred             eEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence               33333334444555443221    1000001111       1222246778887888889996665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.04  E-value=1.6e-12  Score=115.43  Aligned_cols=60  Identities=25%  Similarity=0.367  Sum_probs=47.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCC-------eEEEEECCCCCcHHHHHHHHHHhhccc-CCCCcc
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS  140 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~G-------eiv~LiGpNGsGKSTLlk~L~gll~~~-~p~~G~  140 (255)
                      +++.+++++.|+...    +++++++.+++|       +.++|.||||+|||||+++|++.+... .+.+|.
T Consensus        18 ~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~   85 (334)
T 1in4_A           18 FLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP   85 (334)
T ss_dssp             TTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred             HcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence            456778888898744    669999998876       889999999999999999999998211 155665

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.04  E-value=1.1e-12  Score=119.78  Aligned_cols=129  Identities=19%  Similarity=0.158  Sum_probs=75.9

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCC-CCCcCccCCcccChHHH
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKEA  176 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~-~~~~~~~l~~~e~~~~~  176 (255)
                      ++++|+++.|+.++|+|+||||||||+++|++..    |.-+.. ......+..|. +.+++ ..+...+.+.....  .
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~-~ftTl~p~~G~-V~~~~~~~~~l~DtpGli~~--a  219 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPY-PFTTLSPNLGV-VEVSEEERFTLADIPGIIEG--A  219 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCC-TTCSSCCEEEE-EECSSSCEEEEEECCCCCCC--G
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCc-ccceecceeeE-EEecCcceEEEEeccccccc--h
Confidence            6899999999999999999999999999999985    311110 00011344555 55554 21111111111000  0


Q ss_pred             HHhcCCCCCCcHHHHHHHHHh-------hcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHHH
Q 025256          177 HARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW  244 (255)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~l~~-------l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~  244 (255)
                      ....++    .. .+...++.       +.+. ...+..||.|+++++.++++++..|.+|++    +.+|....
T Consensus       220 ~~~~~L----~~-~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          220 SEGKGL----GL-EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             GGSCCS----CH-HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             hhhhhh----hH-HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence            000111    11 11111111       1112 233446899999999999999999999999    88887655

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.98  E-value=9.5e-11  Score=101.27  Aligned_cols=35  Identities=40%  Similarity=0.491  Sum_probs=32.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++++++.+++|  ++|.||||||||||+++|+|.+.
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence            669999999999  99999999999999999999984

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.97  E-value=7.7e-11  Score=100.62  Aligned_cols=53  Identities=19%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             ceEEEccc-eeec-cccccccccccccceecCC---CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        76 ~~l~i~~l-sk~y-~~~~~~i~~l~~vsl~i~~---Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++++++|+ ++.| +...    +|+++||+|.+   |++++|+|++||||||++++|++.+.
T Consensus        16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57999999 9999 4433    77999999999   99999999999999999999999774

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.96  E-value=1.7e-09  Score=90.56  Aligned_cols=111  Identities=13%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl--l~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~  180 (255)
                      -+++|++++|+||||||||||++.|++.  +.   |+.|        ....+. +.+++....    +. +........+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g--------~~~~~~-~~i~~~~~~----~~-~~~~~~~~~~   82 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRG--------GGEGKA-MYIDTEGTF----RP-ERLLAVAERY   82 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGT--------CCSSEE-EEEESSSCC----CH-HHHHHHHHHT
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcC--------CCCCeE-EEEECCCCc----CH-HHHHHHHHHc
Confidence            4789999999999999999999999995  32   1111        012333 555544211    11 1112223334


Q ss_pred             CCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccch-hhhhhhh--ccCCcEEEEeCCCCCCChH
Q 025256          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILV--GLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~~a~~l--~~~~~ililDEp~~~LD~~  242 (255)
                      ++.    .   .++++++.+.     ..++..+... +..+..+  ..+|+++|+|||+..+|..
T Consensus        83 g~~----~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A           83 GLS----G---SDVLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             TCC----H---HHHHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             CCC----H---HHHhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence            431    1   2244554332     1233333222 2222222  2589999999999999874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.94  E-value=5.9e-11  Score=106.23  Aligned_cols=112  Identities=15%  Similarity=0.092  Sum_probs=61.9

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cC-CC-C---CCCCeeEEEecCCCCCcCccCCcc
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ-V---KPPDVATVLPMDGFHLYLSQLDAM  170 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~-~~-~---~~~~~g~~i~~d~~~~~~~~l~~~  170 (255)
                      ++++++.+ +|++++|+||||+|||||+++|+|++..  |+.|++ .. +. .   .....+. +..++..+        
T Consensus       206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l~--------  273 (358)
T 2rcn_A          206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDVI--------  273 (358)
T ss_dssp             HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEEE--------
T ss_pred             HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEec--------
Confidence            35566644 7999999999999999999999998831  567773 22 21 1   0111122 22222211        


Q ss_pred             cChHHHHHhcCCCCCCcHH----HHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhc
Q 025256          171 EDPKEAHARRGAPWTFNPL----LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       171 e~~~~~~~~~g~~~~~~~~----~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~  224 (255)
                      +.+.. . .+++. .....    .+.++++.+++.  .+.....+| |+++|+++|.+++
T Consensus       274 dtpgv-~-e~~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          274 DSPGV-R-EFGLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             ECHHH-H-TCCCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             CcccH-H-Hhhhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            11111 1 12221 11211    223455555554  355667899 9999999998753

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.92  E-value=3.5e-10  Score=94.76  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~-gll  131 (255)
                      ..++||++++|++++|+||||||||||+++|+ |++
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            48999999999999999999999999999999 998

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.88  E-value=1.3e-09  Score=87.94  Aligned_cols=51  Identities=14%  Similarity=0.085  Sum_probs=45.2

Q ss_pred             CCCCCCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+..|||||+||+++|++++    .+|+++|+|||+++||+.+.+.+.+++.+.
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~  114 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES  114 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence            445689999999999999996    457999999999999999999999998753

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.88  E-value=1e-09  Score=96.05  Aligned_cols=115  Identities=14%  Similarity=-0.001  Sum_probs=66.4

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-c---CCCCCC--------CCeeEEEecCCCCCcC--ccC
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F---DSQVKP--------PDVATVLPMDGFHLYL--SQL  167 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~---~~~~~~--------~~~g~~i~~d~~~~~~--~~l  167 (255)
                      +++.+|++++|+||||||||||+|+|+ ++.   |++|++ +   +|....        +..|.++...|+....  ..+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l  235 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV  235 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence            356679999999999999999999999 887   999994 4   442211        1234422222222110  224


Q ss_pred             CcccCh--HHH----H--HhcCC-CCCCcHHHHHHHHHhhcCCC---CCCCCCCCccccchhhhhh
Q 025256          168 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       168 ~~~e~~--~~~----~--~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~~a~  221 (255)
                      ++ ++.  .+.    .  ...+. ........+.++++.+++..   +.++..||+..++++++|+
T Consensus       236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 443  111    0  11221 22233356788899888863   3455678876666667765

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.85  E-value=6.6e-11  Score=102.03  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+++++.+.|+...    +++++++.+++|  ++|+||||+|||||+++|++.+
T Consensus        50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            45678888886643    679999999999  8999999999999999999997

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.85  E-value=1.3e-09  Score=89.05  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |+++.+|++++|+||||||||||+++|+|++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4677899999999999999999999999997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.84  E-value=2.5e-09  Score=105.93  Aligned_cols=64  Identities=13%  Similarity=0.079  Sum_probs=55.4

Q ss_pred             HHHHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCCc--EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~~--ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.+..+++.   .+..+.+|||||+||+++|++|+.+|+  +|||||||++||+...+.+.++|.+.
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L  512 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL  512 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            34567777775   356788999999999999999998777  99999999999999999999998764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.83  E-value=2.4e-09  Score=102.23  Aligned_cols=162  Identities=17%  Similarity=0.184  Sum_probs=88.0

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-cc-ccCCCCC---CCCeeEE
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQVK---PPDVATV  154 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~-G~-~~~~~~~---~~~~g~~  154 (255)
                      -++++..|+...    +++++++.+..|+.++|+||||+|||||++.|++++.   +.. |. .+.++..   .+..+. 
T Consensus        37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~-  108 (604)
T 3k1j_A           37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKT-  108 (604)
T ss_dssp             SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEE-
T ss_pred             ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEE-
Confidence            356677777644    6799999999999999999999999999999999995   333 11 1111110   111111 


Q ss_pred             EecCCCC-C-------------------cCccCCcccChHHHHHhcCC-CCCC---cHHHHHHHHHhhcCCCCCCCCCCC
Q 025256          155 LPMDGFH-L-------------------YLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFD  210 (255)
Q Consensus       155 i~~d~~~-~-------------------~~~~l~~~e~~~~~~~~~g~-~~~~---~~~~~~~~l~~l~l~~~~~~~~lS  210 (255)
                      +...... +                   ....++...+...  ..... +...   .......++..+.. .......++
T Consensus       109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v--~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~g~~~  185 (604)
T 3k1j_A          109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLV--DNCGRTKAPFIDATGAHAGALLGDVRH-DPFQSGGLG  185 (604)
T ss_dssp             EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEE--CCTTCSSCCEEECTTCCHHHHHCEECC-CCC----CC
T ss_pred             EecchHHHHHHHHHHhhccchhhhhhcccccccccccceee--ccccCCCCCEEEcCCCCHHhcCceEEe-chhhcCCcc
Confidence            1100000 0                   0000000000000  00000 0000   00001111211111 112224678


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .|+++++..+.....++.+|++||... |++..|..+.+.|++
T Consensus       186 ~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          186 TPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            888999887777778999999999988 689999999998874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.79  E-value=3.1e-09  Score=105.14  Aligned_cols=98  Identities=12%  Similarity=0.017  Sum_probs=69.4

Q ss_pred             EecCCCCCcC-ccCCcccChHHHHHhcCCCCCC---------cHHHHHHHHHhhcCC---CCCCCCCCCccccchhhhhh
Q 025256          155 LPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTF---------NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~d~~~~~~-~~l~~~e~~~~~~~~~g~~~~~---------~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~  221 (255)
                      +.++|..+.. ..+++.++..+ ..+.+++...         ....-.+.++.++++   .+..+.+|||||+||+++|+
T Consensus       439 v~~~g~~i~q~~~ltV~e~~~f-~e~l~l~~~~~~i~~~~~~ei~~Rl~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~  517 (972)
T 2r6f_A          439 VLVGGKHIGEVTAMSVTEALAF-FDGLELTEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLAT  517 (972)
T ss_dssp             EESSSCBHHHHHTSBHHHHHHH-HHHCCCCHHHHHHSHHHHHHHHHHHHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHH
T ss_pred             eEECCCcHHHHhhCCHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHHHhhhCCCCccccCCccccCCHHHHHHHHHHH
Confidence            4555554431 23556666666 3444443310         011113457778876   46778899999999999999


Q ss_pred             hhccC--CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          222 LVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~--~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +|..+  |++|||||||++||+...+.+.++|..
T Consensus       518 aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~  551 (972)
T 2r6f_A          518 QIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS  551 (972)
T ss_dssp             HHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             HHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence            99987  499999999999999999999998875

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.79  E-value=2.5e-09  Score=99.20  Aligned_cols=35  Identities=20%  Similarity=0.379  Sum_probs=33.7

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++||++.+|++++|+||||||||||+++|+|+++
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~  318 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE  318 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence            68999999999999999999999999999999996

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.77  E-value=1.9e-08  Score=88.95  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=25.3

Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+++++|+|||+. ||+..+..+.+++++
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~  160 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK  160 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence            566899999999999 999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.77  E-value=7.2e-09  Score=90.49  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|++++|+||||+||||+++.|++.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999999995

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.73  E-value=2.9e-09  Score=87.39  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=27.8

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...+|++++|+|+||||||||+++|++++.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999999984

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.73  E-value=1.3e-08  Score=92.53  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=60.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHH--HhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~--gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~  180 (255)
                      -|++|++++|+||||||||||++.|+  +++.   ++.|        ... +.++.+++....    .. +........+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~~-~rl~~~a~~~  236 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----RP-VRLVSIAQRF  236 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----CH-HHHHHHHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----CH-HHHHHHHHHc
Confidence            57899999999999999999999664  4442   2222        011 223556554321    11 1122233445


Q ss_pred             CCCCCCcHHHHHHHHHhhcCCCCCCCCCCCc-cccchhhhhhhh--ccCCcEEEEeCCCCCCChH
Q 025256          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~-G~~qrv~~a~~l--~~~~~ililDEp~~~LD~~  242 (255)
                      ++.       ..++++++.+..     .++. .+.+.+..+..+  ..+|++||+|+|++.+|..
T Consensus       237 gl~-------~~~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          237 GLD-------PDDALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             TCC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred             CCC-------hHhHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence            542       125566655432     1222 122222222222  3579999999999999864

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.72  E-value=1.3e-08  Score=81.75  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=34.5

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +++++++.+| +.+|+||||||||||+++|.+++.   +..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence            6778889888 999999999999999999999986   66654

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.71  E-value=9.2e-10  Score=92.58  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=40.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~  144 (255)
                      .|+++|+...|+.           ++++.+ ++++|+||||||||||+++|+|++.   |++|. .+++
T Consensus         9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g   62 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRN   62 (227)
T ss_dssp             EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC----
T ss_pred             EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECC
Confidence            5788888776642           344555 8999999999999999999999997   99998 3444

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.70  E-value=2.9e-08  Score=81.44  Aligned_cols=33  Identities=27%  Similarity=0.529  Sum_probs=28.6

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++--.+.+|.+++|+|++||||||+++.|++.+
T Consensus        13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            344467889999999999999999999999976

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.70  E-value=3.3e-09  Score=86.04  Aligned_cols=38  Identities=8%  Similarity=0.049  Sum_probs=32.9

Q ss_pred             cchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 ~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+.+|++++.+++++++|  ++++|..+.+++.+.+.+
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            34567889999999999999  999999999999988764

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.70  E-value=6e-09  Score=85.32  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=35.8

Q ss_pred             ccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        81 ~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|++..++...    +.+.+++..++|++++|+|||||||||+++.|++.+
T Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A            3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35666665543    568888889999999999999999999999999998

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.69  E-value=1.6e-08  Score=99.44  Aligned_cols=62  Identities=13%  Similarity=0.007  Sum_probs=53.8

Q ss_pred             HHHHhhcCC---CCCCCCCCCccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+..++++   .+..+..|||||+|||++|++|+.+|  .++||||||++||+...+.+.++++..
T Consensus       361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L  427 (842)
T 2vf7_A          361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL  427 (842)
T ss_dssp             HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence            356667775   36678899999999999999999998  499999999999999999999988653

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.61  E-value=2.4e-08  Score=93.56  Aligned_cols=49  Identities=14%  Similarity=0.015  Sum_probs=45.1

Q ss_pred             CCCC-CccccchhhhhhhhccCC--cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          206 APSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~l-S~G~~qrv~~a~~l~~~~--~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..| ||||+||+++|++++.+|  ++||+|||+++||+.....+.++|.+.
T Consensus       394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~  445 (517)
T 4ad8_A          394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL  445 (517)
T ss_dssp             SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence            4467 999999999999999999  999999999999999999999998753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.60  E-value=2.2e-08  Score=81.84  Aligned_cols=37  Identities=35%  Similarity=0.382  Sum_probs=25.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|+||++.+|++++|+|++||||||+++.|+..+.
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            7799999999999999999999999999999999874

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.60  E-value=4.7e-08  Score=79.41  Aligned_cols=36  Identities=8%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ....|++++.+++++++|  ++++|....+++.+.+.+
T Consensus       129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence            345688888899999999  999999999988887754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.59  E-value=8e-09  Score=96.67  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +++++++.+++|++++|+||||||||||+++|+|++.   |+.|.
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi  290 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV  290 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence            5689999999999999999999999999999999997   78887

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.58  E-value=2e-08  Score=82.34  Aligned_cols=27  Identities=41%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|++++|+||||||||||+++|+|++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999999999998

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.58  E-value=2.6e-08  Score=81.27  Aligned_cols=34  Identities=21%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (255)
                      ++.+|++++|+|||||||||++++|++++.   |+.|
T Consensus         2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~   35 (207)
T 2j41_A            2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK   35 (207)
T ss_dssp             --CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence            578999999999999999999999999985   5444

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.56  E-value=5.9e-08  Score=79.31  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=25.3

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +..++|++++|+||||||||||+++|++.+
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456789999999999999999999999987

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.51  E-value=7e-09  Score=93.88  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=26.0

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+.+|..+||+|+||+|||||+++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4678999999999999999999999994

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.46  E-value=8.9e-08  Score=77.04  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|++++|+||||||||||+++|++++
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999999987

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.46  E-value=4.4e-08  Score=85.53  Aligned_cols=37  Identities=22%  Similarity=0.268  Sum_probs=30.6

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~  141 (255)
                      |++..|++++|+||||||||||+++|+|++.   |++|++
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i  200 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEV  200 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC----
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccce
Confidence            4566899999999999999999999999997   899983

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.45  E-value=2.9e-08  Score=84.04  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+++++.+.|+...    +++++++++++|  ++|.||||+|||||+++|++.+
T Consensus        26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            45678888886543    679999999999  8999999999999999999987

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.41  E-value=1.1e-07  Score=88.11  Aligned_cols=48  Identities=27%  Similarity=0.398  Sum_probs=36.0

Q ss_pred             EEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        79 ~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++++.+.+....    .+.++++.+++|  +.|.||+|+|||||++.|++...
T Consensus        27 ~l~e~v~~l~~~~----~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           27 ELKEVVEFLKDPS----KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHHHHHHHHCTH----HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhChH----HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence            3445544454322    457788888877  78999999999999999999873

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.38  E-value=1.2e-07  Score=85.44  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=34.5

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++++++.+++|++++|+||||||||||+++|++.+
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            679999999999999999999999999999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.36  E-value=2e-07  Score=85.14  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=43.1

Q ss_pred             CCCccccchhhhhhhhc----cCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       208 ~lS~G~~qrv~~a~~l~----~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .||+||++++++|++++    .+|+++|+|||+++||+..+..+.+++.+
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  382 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR  382 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence            48999999999999998    58999999999999999999999999865

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.35  E-value=4.8e-07  Score=75.49  Aligned_cols=36  Identities=19%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             ccccc-ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~v-sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+.+ .--+++|++++|+||||||||||+..++...
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~   47 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNG   47 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34555 4568899999999999999999966555443

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.35  E-value=4.9e-08  Score=85.58  Aligned_cols=37  Identities=19%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS  141 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~  141 (255)
                      +++.+|++++|+||||+|||||+|+|+|++.   |+.|++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~I  204 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNEI  204 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccce
Confidence            7788999999999999999999999999997   888884

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.35  E-value=4.4e-07  Score=83.54  Aligned_cols=37  Identities=16%  Similarity=0.366  Sum_probs=33.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .|+++..-+.+|+++.|+|++|+|||||+..+++...
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5688887899999999999999999999999999873

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.33  E-value=3.9e-07  Score=83.23  Aligned_cols=46  Identities=17%  Similarity=0.362  Sum_probs=38.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -|+++|+ +.|++.       .  .+++.+|++++|+||||||||||+++|++++.
T Consensus         6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A            6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4788899 788652       1  24467799999999999999999999999985

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.32  E-value=3e-07  Score=82.51  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             CCCCCccccchh------hhhhhhccC-CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          206 APSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~~qrv------~~a~~l~~~-~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+|+||+||+      ++|+++..+ |+++|+|||+++||+..+..+.+++.+
T Consensus       278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  332 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK  332 (371)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            347999999988      456778889 999999999999999999999999865

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.32  E-value=3.1e-07  Score=75.64  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=26.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++|++++|+||||||||||++.|++.+.
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5799999999999999999999999984

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.32  E-value=4e-08  Score=87.31  Aligned_cols=55  Identities=24%  Similarity=0.257  Sum_probs=48.1

Q ss_pred             ccceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        74 ~~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.+++.+++.+.|+...    +++++++.+.+|.+++|+|++|+|||||++.|++.+.
T Consensus        27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            355678888888887644    6699999999999999999999999999999999985

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.31  E-value=2.8e-07  Score=74.34  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |++++|+||||||||||+++|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999999998744

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.29  E-value=4.7e-07  Score=72.00  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+|++++|+|||||||||++++|++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            569999999999999999999999987

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.28  E-value=1.8e-07  Score=79.47  Aligned_cols=34  Identities=24%  Similarity=0.413  Sum_probs=30.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCccc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKASS  141 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~---gll~~~~p~~G~~  141 (255)
                      .+|++++|+|||||||||++++|+   |+..   +++|.+
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~i   61 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGAI   61 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCce
Confidence            689999999999999999999999   7664   778873

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.27  E-value=1.5e-06  Score=73.48  Aligned_cols=120  Identities=24%  Similarity=0.409  Sum_probs=66.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcC----
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----  181 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g----  181 (255)
                      ...+|+|.|++||||||+.+.|+..+..  +    .++   .......++..|+++..   +.   .....+...+    
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d---~~~~~~~~i~~D~~~~~---~~---~~~~~~~~~g~~~f   85 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD---YRQKQVVILSQDSFYRV---LT---SEQKAKALKGQFNF   85 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC---GGGCSEEEEEGGGGBCC---CC---HHHHHHHHTTCSCT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc---ccCCceEEEecCccccc---cC---hhhhhhhccCCCCC
Confidence            3468999999999999999999987630  0    000   00011224677776421   11   1111111222    


Q ss_pred             -CCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          182 -APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       182 -~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                       .++.++...+.+.++.+..+.....+.|+.....++.-... ....+++|+|+++...++
T Consensus        86 ~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~  145 (252)
T 1uj2_A           86 DHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ  145 (252)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH
T ss_pred             CCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH
Confidence             24455666667777777655444444444433333311111 235689999998876554

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.26  E-value=2.6e-07  Score=77.27  Aligned_cols=30  Identities=20%  Similarity=0.209  Sum_probs=27.2

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +...++|++++|.|+||||||||+++|+++
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            445688999999999999999999999987

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.23  E-value=5.1e-07  Score=71.47  Aligned_cols=27  Identities=41%  Similarity=0.646  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .|++++|+|||||||||++++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999999999874

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.22  E-value=2.2e-07  Score=86.73  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+.+++.++..++|+|++||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            4678888899999999999999999999875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.20  E-value=8e-07  Score=78.29  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=33.3

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++|++++|++++|+|+||+||||++..|++.+.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999995

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.20  E-value=2.2e-06  Score=76.37  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=26.5

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+++|+++.|.||+|+|||||+..++....
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999988887663

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.18  E-value=9.5e-07  Score=72.49  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=26.4

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |+...+|++++|+||||||||||++.|.+..
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3445689999999999999999999999987

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.16  E-value=8.1e-07  Score=83.74  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=30.9

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (255)
                      .+++|++++|+|+||||||||+++|++++.   |+.|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence            578999999999999999999999999996   6554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.15  E-value=8.9e-06  Score=74.41  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.+++++||+|+||||++..|+..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999985

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.08  E-value=1e-06  Score=82.97  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=41.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +-++++.+.|....    ++.++++++ +|++++|+||||+|||||++.|++.+.
T Consensus        84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            33466777775533    678888888 899999999999999999999999994

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.07  E-value=7.8e-06  Score=74.64  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++.+.|+...      .+++|+  ++++++++|+||+||||++..|++.+.
T Consensus        79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346777886532      677777  899999999999999999999999995

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.07  E-value=1.3e-06  Score=75.87  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=58.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCc-CccCCcccChHH--HH--Hhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKE--AH--ARR  180 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~-~~~l~~~e~~~~--~~--~~~  180 (255)
                      ++-+|||.||+||||||+.+.|+..+..              ......++..|+++.. ...++.  ....  ..  ..+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~~~~~~~~--~~~~~~~~g~~~~   67 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKA--ELDRRYAAGDATF   67 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHH--HHHHHHHHTCTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcCCHHHhhh--hhhhhhhccCcCc
Confidence            4568999999999999999999986620              1111345788887632 110000  0000  00  122


Q ss_pred             CC--CCCCcHHHHHHHHHhhcCCCCCCCCCCCcc-----ccchhhhh----hhhccCCcEEEEeCCCCC
Q 025256          181 GA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG-----VGDPVEDD----ILVGLQHKVVIVDGNYLF  238 (255)
Q Consensus       181 g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G-----~~qrv~~a----~~l~~~~~ililDEp~~~  238 (255)
                      ..  ++.++...+.+.+..+..+.....+.|+++     ...+..-.    ..+....+++|+|+++.+
T Consensus        68 ~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~  136 (290)
T 1a7j_A           68 SHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGA  136 (290)
T ss_dssp             STTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTT
T ss_pred             CCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccc
Confidence            22  344555555566665544444444444221     00111100    112235789999999987

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.06  E-value=1.2e-06  Score=76.96  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=23.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -++++|+|+||||||||+|.|.|+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3689999999999999999999986

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.04  E-value=2.1e-06  Score=77.25  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=46.2

Q ss_pred             eEEEccceeecccccccccccc--------------ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~--------------~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -++++||+..|...  +. .++              |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~e--r~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANS--RL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCS--BC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCC--cc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            47789999999863  22 456              8999999999999999999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.02  E-value=3.6e-06  Score=65.73  Aligned_cols=31  Identities=23%  Similarity=0.320  Sum_probs=25.1

Q ss_pred             cceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus        17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            3445554 489999999999999999998665

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.00  E-value=8e-06  Score=72.50  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.8

Q ss_pred             CCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Ge--iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.  .+.|.||+|+|||||++.+++.+.
T Consensus        40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           40 PGHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             TTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            3456  899999999999999999999984

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.99  E-value=3.7e-06  Score=69.37  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=27.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      +.+++|+||+||||||++++|++.+.-..++.|.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~   38 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   38 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence            5689999999999999999999987322256666

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.98  E-value=4.7e-06  Score=69.76  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             ccccceecC---CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~vsl~i~---~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      |.++++.+.   +|.+++|.|++||||||+++.|+..+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            466666665   899999999999999999999999984

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.97  E-value=4.9e-06  Score=66.34  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|++++|+|++||||||+++.|++.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999999884

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.91  E-value=2.4e-06  Score=75.36  Aligned_cols=47  Identities=28%  Similarity=0.492  Sum_probs=39.6

Q ss_pred             cceeeccccccccccccccceecCCCeE--EEEECCCCCcHHHHHHHHHHhhc
Q 025256           82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        82 ~lsk~y~~~~~~i~~l~~vsl~i~~Gei--v~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++..|+...    +++.++..++.|++  +.|.||+|+||||+++++++.+.
T Consensus        23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            5556666533    56888899999998  99999999999999999999875

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.90  E-value=3.9e-05  Score=65.92  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++..+.|.||+|+|||||++.+++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999987

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.90  E-value=4.6e-06  Score=81.69  Aligned_cols=46  Identities=9%  Similarity=-0.095  Sum_probs=35.7

Q ss_pred             CCCCCCccccchhhhhhhhccCCcEEEEeCCCC-CCChHHHHHHHHH
Q 025256          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVSSM  250 (255)
Q Consensus       205 ~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~-~LD~~~~~~l~~l  250 (255)
                      .+-.++.|+.+|..++..++.++++||+||++. ++|......+...
T Consensus       187 ~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~  233 (773)
T 2xau_A          187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQ  233 (773)
T ss_dssp             SEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHH
T ss_pred             CEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHH
Confidence            344567899999988888899999999999996 8886654444433

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.85  E-value=8.7e-06  Score=65.39  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+...+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46788889999999999999999999999987

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.85  E-value=4.8e-06  Score=72.53  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             Eccceeeccccccccccccc-cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~-vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++.+.|+...      .+ ++++.+ |++++++|+||+||||++..|++.+.
T Consensus        77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456777787532      56 788876 99999999999999999999999985

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.85  E-value=1.5e-05  Score=70.69  Aligned_cols=106  Identities=17%  Similarity=0.153  Sum_probs=64.5

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~  175 (255)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++....    ..          .....++++.        ++..+....
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~----------g~~Vl~fSlE--------ms~~ql~~R   92 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----ND----------DRGVAVFSLE--------MSAEQLALR   92 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HT----------TCEEEEEESS--------SCHHHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----Hc----------CCeEEEEeCC--------CCHHHHHHH
Confidence            4466655789999999999999999999999988763    01          1111112221        121111111


Q ss_pred             HH-HhcCCCCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCC
Q 025256          176 AH-ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       176 ~~-~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD  240 (255)
                      .. ...++    +...+.             -..+|.++.+|+..|...+.+++++|.|+|...++
T Consensus        93 lls~~~~v----~~~~l~-------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A           93 ALSDLTSI----NMHDLE-------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             HHHHHHCC----CHHHHH-------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             HHHHhhCC----CHHHHh-------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence            10 01111    111111             13688899999988888888888999999876544

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.84  E-value=6.9e-06  Score=66.90  Aligned_cols=22  Identities=45%  Similarity=0.640  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHH
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+++|+|+|||||||++++|++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999998

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.84  E-value=3.4e-06  Score=78.57  Aligned_cols=49  Identities=27%  Similarity=0.369  Sum_probs=40.6

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++++.+.|....    ++.++++.+++|  ++|.||||+|||||++.|++...
T Consensus        41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence            45567776676533    569999999998  89999999999999999999873

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.84  E-value=1.9e-05  Score=70.44  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+++|+++.|.||+|||||||+..++....
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            377999999999999999999999999874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.82  E-value=9.4e-06  Score=66.23  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ...+|.+++|+||+|||||||++.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35689999999999999999999999877

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.81  E-value=6.2e-05  Score=64.87  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=23.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...+.|.||+|+||||+++.|++.+.
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHc
Confidence            36899999999999999999999984

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.80  E-value=1e-05  Score=65.75  Aligned_cols=22  Identities=41%  Similarity=0.605  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|+|+|||||||+++.|++ +
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~   24 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-L   24 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-T
T ss_pred             EEEEECCCCcCHHHHHHHHHH-C
Confidence            689999999999999999999 5

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.78  E-value=1.7e-05  Score=63.50  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=27.9

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +...+|.++.|+|++||||||+++.|+..+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999999984

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.78  E-value=4.3e-06  Score=74.92  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|+|++|||||||++.|+|..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.77  E-value=1.5e-05  Score=65.45  Aligned_cols=31  Identities=29%  Similarity=0.306  Sum_probs=28.5

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+.+|.++.|.|++||||||+++.|++.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5578899999999999999999999999984

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.74  E-value=8e-06  Score=76.33  Aligned_cols=36  Identities=19%  Similarity=0.298  Sum_probs=32.6

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++++++++.+| +.+|+|+||||||||+..|..++.
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg   85 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence            457889999999 999999999999999999999863

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.72  E-value=1.7e-05  Score=64.41  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+++|+|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999987

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.72  E-value=2.3e-05  Score=64.27  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=26.2

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..+++.+ .+.+|+|||||||||++..|.-.+.
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33445554 5899999999999999999987664

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.70  E-value=2e-05  Score=70.12  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=28.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .++.+++|+|++|||||||++.|.|.+.   +..|+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~  104 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK  104 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence            3588999999999999999999999885   55554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.69  E-value=2.4e-05  Score=62.39  Aligned_cols=27  Identities=41%  Similarity=0.704  Sum_probs=23.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+|.+++|+|++||||||+++.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999999999755

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.68  E-value=4.3e-05  Score=67.05  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=26.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            57899999999999999999999998865

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.64  E-value=9.2e-05  Score=65.78  Aligned_cols=45  Identities=4%  Similarity=-0.206  Sum_probs=31.1

Q ss_pred             CCCCccccchhhhhhhhccCCcEEEEe-CCCCCCChHHHHHHHHHHH
Q 025256          207 PSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       207 ~~lS~G~~qrv~~a~~l~~~~~ililD-Ep~~~LD~~~~~~l~~ll~  252 (255)
                      ..++.++++.+. +.+...++-++++| ++..++|.....++.+.+.
T Consensus       230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~  275 (357)
T 2e87_A          230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH  275 (357)
T ss_dssp             TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence            456777777665 44444567788999 8888888877666665554

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.63  E-value=3.5e-05  Score=64.30  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=28.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      -.+|.+++|+|++||||||++++|++.+.-.+.+.|.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~   49 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   49 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence            4678999999999999999999999865322234444

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.62  E-value=0.0001  Score=65.32  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=26.8

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999874

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.60  E-value=3.7e-05  Score=60.20  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|+|++||||||+++.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999998873

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.59  E-value=2.4e-05  Score=69.66  Aligned_cols=47  Identities=13%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             EccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        80 i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++++.+.|+... ...+|++++++++   .|+|+|++|||||||++.|.|.
T Consensus        11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            456777776421 1226799999997   8999999999999999999993

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.57  E-value=7.5e-05  Score=63.65  Aligned_cols=29  Identities=38%  Similarity=0.576  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..+.-+.|.||+|+|||||++.|+..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45667799999999999999999999873

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.55  E-value=3.6e-05  Score=60.81  Aligned_cols=27  Identities=37%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|..++|+|++|+|||||++.|++..
T Consensus         2 ~~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            2 SHGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            357889999999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.54  E-value=3.4e-05  Score=65.25  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.. ....+.++.|+|++||||||+++.|+..+
T Consensus        24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4444 56778999999999999999999999987

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.54  E-value=0.00014  Score=63.66  Aligned_cols=36  Identities=17%  Similarity=0.317  Sum_probs=31.1

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456766668999999999999999999998888665

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.53  E-value=1.3e-05  Score=71.58  Aligned_cols=45  Identities=18%  Similarity=0.150  Sum_probs=34.9

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.+.++.+.|+...    ++++++|.|      +|+|++|+|||||++.|.+..
T Consensus        17 ~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           17 YVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             eEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            578889999997644    568888776      999999999999999998764

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.53  E-value=5.4e-05  Score=59.82  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999999987

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.51  E-value=0.00074  Score=61.79  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999999885

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.50  E-value=6.3e-05  Score=60.30  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -.+++|+|++|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35899999999999999999999874

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.49  E-value=5.3e-05  Score=69.38  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..+.|.||+|+|||||++.|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999873

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.48  E-value=4e-05  Score=66.64  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.+++|+|++|+|||||++.|.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            345689999999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.48  E-value=6.3e-05  Score=63.34  Aligned_cols=34  Identities=29%  Similarity=0.513  Sum_probs=24.8

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.++++.+..|  +.|.||+|+|||||++.|++.+.
T Consensus        37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            35555555555  88999999999999999999884

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.46  E-value=7.2e-05  Score=63.32  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+++|+||+|||||||.+.|+..+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            478999999999999999999987

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.46  E-value=6.4e-05  Score=60.27  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +++++++..++. .++|+|++|+|||||++.+.+-
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            558888888776 6789999999999999999874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.45  E-value=8.5e-05  Score=59.33  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+.++.|.|++||||||+++.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999999876

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.45  E-value=8.2e-05  Score=59.21  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=23.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.++.|.|++||||||+++.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.41  E-value=0.0001  Score=60.43  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+.+++|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999998

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.41  E-value=9.1e-05  Score=62.18  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+-+++|.||+||||||+++.|+..+.
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            345899999999999999999998763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.40  E-value=8e-05  Score=58.93  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.|+|++||||||+.+.|+..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            588999999999999999999873

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.40  E-value=0.00018  Score=63.72  Aligned_cols=37  Identities=27%  Similarity=0.674  Sum_probs=30.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY  163 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~  163 (255)
                      .+++|+||+|||||||.+.|+..+.                   +.++..|.+.++
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~-------------------~~iis~Ds~qvY   44 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN-------------------GEIISGDSMQVY   44 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT-------------------EEEEECCSSTTB
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC-------------------Cceecccccccc
Confidence            4899999999999999999999873                   456788887444

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.39  E-value=9e-05  Score=58.84  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +..+.++.|+|++||||||+++.|+..+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            3467889999999999999999999776

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.39  E-value=0.0001  Score=59.35  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999763

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.39  E-value=8.7e-05  Score=57.86  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCcHHHHHHHH
Q 025256          108 HIVGLAGPPGAGKSTLAAEV  127 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L  127 (255)
                      .+++|.||+||||||+++.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.38  E-value=7.2e-05  Score=58.40  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|++|+|||||++.+.|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.37  E-value=3.2e-05  Score=62.56  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=29.4

Q ss_pred             eeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        85 k~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      ..|++.. .  +++++++..++.+ ++|+|++|+|||||++.+.+
T Consensus         7 ~~~~~~~-~--~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            7 WIYSGFS-S--VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             ------C-H--HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHH-H--HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            4455532 2  5689999988875 68999999999999999875

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.35  E-value=0.00013  Score=58.12  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999998773

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.34  E-value=0.00013  Score=58.76  Aligned_cols=25  Identities=40%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +..+|+|+|++||||||+.+.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999999875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.33  E-value=0.00014  Score=58.69  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.+++|.|+.||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999875

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.33  E-value=0.00015  Score=58.62  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+|+|.|+.||||||+++.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            478999999999999999999999873

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.32  E-value=0.00014  Score=58.11  Aligned_cols=28  Identities=29%  Similarity=0.585  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..++.+++|.|+.||||||+.+.|+..+
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999999766

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.31  E-value=6.1e-05  Score=61.29  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999884

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.31  E-value=0.00014  Score=57.34  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHH
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999997

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.30  E-value=0.00017  Score=57.51  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++.+|+|.|++||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999998765

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.28  E-value=0.00034  Score=61.65  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+..+.|.||+|+|||||++.++..+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999998873

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.28  E-value=0.00016  Score=58.48  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=22.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|.|++||||||+++.|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999999763

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.28  E-value=0.00016  Score=58.65  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+|.+++|.|+.||||||+++.|+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.00014  Score=57.60  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -.++|+|++|+|||||++.|++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.25  E-value=0.00019  Score=58.33  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+|.+|+|.|+.||||||+++.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.24  E-value=0.00017  Score=62.20  Aligned_cols=29  Identities=28%  Similarity=0.505  Sum_probs=25.4

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ....+.++.|+||+||||||+.+.|+..+
T Consensus        29 ~~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           29 AVESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34568899999999999999999998766

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.24  E-value=0.0002  Score=57.13  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.23  E-value=9.4e-05  Score=59.36  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=25.0

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +..+.+++|.|+.||||||+++.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4457899999999999999999999876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.23  E-value=0.00045  Score=60.42  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+++|+||+|||||||...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999999876

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.21  E-value=0.00017  Score=64.48  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+..+++.+ .+.+|+|||||||||++..|.=
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            555666666 4899999999999999999986

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.20  E-value=0.00014  Score=57.60  Aligned_cols=27  Identities=30%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.++.|.|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            567899999999999999999997763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.20  E-value=0.0002  Score=62.04  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+.++..+.|.||+|+|||||++.|++.+.
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567889999999999999999999999873

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.19  E-value=0.00019  Score=58.18  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            47799999999999999998765

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.18  E-value=0.00022  Score=56.71  Aligned_cols=24  Identities=42%  Similarity=0.560  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.|.|++||||||+++.|+..+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999998773

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.16  E-value=0.00015  Score=57.67  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999999999864

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.15  E-value=0.00029  Score=57.82  Aligned_cols=26  Identities=42%  Similarity=0.603  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            56789999999999999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.10  E-value=0.00036  Score=56.37  Aligned_cols=27  Identities=41%  Similarity=0.636  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+.+|+|.|+.||||||+++.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999999876

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.09  E-value=0.00056  Score=60.41  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++.++.|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46799999999999999999999877

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.08  E-value=0.00039  Score=56.13  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ....+|+|.|+.||||||+++.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            456789999999999999999998665

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.06  E-value=0.00066  Score=59.61  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            579999999999999999999987

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.06  E-value=0.00028  Score=56.06  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|+|+|++||||||+.+.|+..+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998763

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.05  E-value=0.00041  Score=62.63  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.7

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+..+..++|+|+||+|||||++.|.|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567888999999999999999999987

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.05  E-value=0.00037  Score=55.35  Aligned_cols=25  Identities=40%  Similarity=0.662  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.05  E-value=0.00037  Score=56.82  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.04  E-value=0.0004  Score=54.33  Aligned_cols=26  Identities=35%  Similarity=0.386  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -++++|.|+.||||||+.+.|+..+.
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            36899999999999999999998773

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.04  E-value=0.00032  Score=54.91  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+++|.|++||||||+++.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999877

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.04  E-value=0.00034  Score=57.75  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.+++|.|+.||||||+++.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.04  E-value=0.00039  Score=55.32  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.03  E-value=0.00031  Score=67.61  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=27.1

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.+++++.++|+|++|+|||||++.|.+...
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            45678899999999999999999999998763

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.00  E-value=0.00089  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..++.|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4689999999999999999999877

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.00  E-value=0.00047  Score=53.74  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|.|+.||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.99  E-value=0.00037  Score=57.26  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999998763

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.97  E-value=0.00045  Score=56.39  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+||+||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.97  E-value=0.00059  Score=57.21  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.+++|.||+||||||+++.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998755

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.96  E-value=0.00035  Score=58.09  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -.|+|+|++|+|||||++.|.|...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCc
Confidence            3589999999999999999998763

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.93  E-value=0.00066  Score=56.25  Aligned_cols=31  Identities=23%  Similarity=0.509  Sum_probs=26.8

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -...+..++.|+||.||||+|.++.|+-.+.
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3456788999999999999999999998763

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.93  E-value=0.00054  Score=57.97  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++.+|.|.|++||||||+++.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999875

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.92  E-value=0.00049  Score=55.84  Aligned_cols=26  Identities=27%  Similarity=0.508  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.+++|+|+.||||||+.+.|+..+
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHhc
Confidence            34689999999999999999999876

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.87  E-value=0.00043  Score=58.85  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|++|||||||++.|.|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999975

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.87  E-value=0.0012  Score=59.53  Aligned_cols=25  Identities=32%  Similarity=0.674  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+++|+||+|||||||...|+..+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3578999999999999999999887

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.86  E-value=0.00061  Score=58.48  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      ...+|+|+|++||||||+++.|+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999994

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.83  E-value=0.00051  Score=62.68  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+||+|||||++.|.|..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.81  E-value=0.00077  Score=55.59  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|.|++||||||+++.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.80  E-value=0.00088  Score=54.82  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998874

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.80  E-value=0.00079  Score=53.41  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.75  E-value=0.00083  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47899999999999999998854

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.75  E-value=0.00055  Score=56.87  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=24.0

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -.+.+|+.++|.||+||||||++..+...
T Consensus        71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           71 EAISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            34567999999999999999988876543

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.75  E-value=0.00082  Score=55.09  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.++.|.|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998866

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.73  E-value=0.00088  Score=59.99  Aligned_cols=32  Identities=28%  Similarity=0.239  Sum_probs=26.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .+.-++|+||+|||||||++.|.....   +..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~   65 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR   65 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence            466789999999999999999999875   44444

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.72  E-value=0.00077  Score=59.22  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999884

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.72  E-value=0.00091  Score=51.09  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.71  E-value=0.00095  Score=51.05  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999988754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.69  E-value=0.00087  Score=51.14  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48899999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.69  E-value=0.00098  Score=51.03  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            57899999999999999998754

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.69  E-value=0.0013  Score=54.59  Aligned_cols=27  Identities=37%  Similarity=0.523  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.++.|+|+.||||||+.+.|+..+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            457899999999999999999998763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.67  E-value=0.00095  Score=54.45  Aligned_cols=25  Identities=40%  Similarity=0.607  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999999876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.66  E-value=0.001  Score=54.29  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|.|+.||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.66  E-value=0.0011  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            47999999999999999998864

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.66  E-value=0.0014  Score=54.10  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=25.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|.++.|.|+.||||||+++.|+..+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999998874

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.65  E-value=0.0011  Score=51.13  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.65  E-value=0.0011  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998854

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.64  E-value=0.0011  Score=50.97  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.64  E-value=0.0013  Score=52.93  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=23.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.|.||+|+|||||++.|+..+.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999999884

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.64  E-value=0.0011  Score=56.90  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++.|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.64  E-value=0.0015  Score=51.07  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998873

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.63  E-value=0.0011  Score=51.49  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.63  E-value=0.022  Score=51.88  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..+++++|++|+||||+.-.|+..+.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999998884

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.63  E-value=0.0012  Score=51.36  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45678999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.62  E-value=0.0012  Score=50.74  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.62  E-value=0.001  Score=51.18  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47899999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.61  E-value=0.00098  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.61  E-value=0.0029  Score=57.71  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=30.7

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            445555558899999999999999999999988876

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.60  E-value=0.00092  Score=51.82  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998754

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.58  E-value=0.0014  Score=55.01  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.++.|.|++||||||+++.|+..+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999998874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.58  E-value=0.0011  Score=51.48  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999998863

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.58  E-value=0.00098  Score=57.00  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|++|+|||||++.|+|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999864

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.57  E-value=0.00085  Score=58.55  Aligned_cols=35  Identities=20%  Similarity=0.434  Sum_probs=26.3

Q ss_pred             cccceecCCC--eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~vsl~i~~G--eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+.-.+..|  ..+.|.||+|+||||+++.+++.+.
T Consensus        47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3333334444  3389999999999999999999873

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.57  E-value=0.0011  Score=55.18  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=22.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|.+|.|.|+.||||||+++.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999998874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.55  E-value=0.00064  Score=55.24  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3889999999999999999998874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.55  E-value=0.0014  Score=50.38  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998743

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.54  E-value=0.0014  Score=51.45  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.|.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            48899999999999999998754

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.54  E-value=0.0014  Score=52.05  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.54  E-value=0.0069  Score=50.40  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=20.7

Q ss_pred             CCeE-EEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHI-VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Gei-v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|++ +.+.|+.|+||||++-.++..+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            5665 7788999999999966666665

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.53  E-value=0.0014  Score=51.81  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.|.+..
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999999864

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.53  E-value=0.0011  Score=51.23  Aligned_cols=23  Identities=43%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999997643

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.52  E-value=0.0014  Score=51.48  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.51  E-value=0.0016  Score=54.12  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.+++|.|+.||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999999887

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.50  E-value=0.0014  Score=59.44  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-....++.|+|++||||||+++.|+..+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            334567899999999999999999988655

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.50  E-value=0.0016  Score=50.00  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998754

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.49  E-value=0.0019  Score=56.50  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=29.0

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus       134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            567777777 688999999999999999998887

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.49  E-value=0.00077  Score=51.87  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999987644

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.48  E-value=0.0018  Score=53.35  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+|.|-|+.||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999998884

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.48  E-value=0.0016  Score=50.91  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            358999999999999999998754

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.47  E-value=0.0022  Score=53.30  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|.+|.|.|+.||||||+++.|+..+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999998874

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.47  E-value=0.0022  Score=49.39  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999997743

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.47  E-value=0.0011  Score=52.61  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .-.++|+|+.|+|||||++.|.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999875

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.47  E-value=0.0015  Score=53.36  Aligned_cols=35  Identities=29%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++..-+.+ .|..+.|+||+|+|||||+..|+...
T Consensus        24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            345555555 47889999999999999998887654

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.46  E-value=0.0019  Score=53.00  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.|+||.||||+|.++.|+..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999997763

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.46  E-value=0.0017  Score=50.41  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.46  E-value=0.0017  Score=51.55  Aligned_cols=23  Identities=30%  Similarity=0.449  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.+.+-.
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~~   44 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTGT   44 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58899999999999998777643

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.45  E-value=0.0017  Score=51.31  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++|+|+.|+|||||++.+.+...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            478999999999999999998763

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.45  E-value=0.0015  Score=50.66  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.45  E-value=0.0017  Score=51.33  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.|.+..
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.45  E-value=0.0017  Score=50.58  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.45  E-value=0.00091  Score=52.87  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999998865

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.43  E-value=0.001  Score=51.79  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999987643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.43  E-value=0.0051  Score=60.76  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=23.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.|.||+|+|||++++.|+..+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5789999999999999999999983

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.43  E-value=0.0013  Score=51.90  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            368999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.43  E-value=0.0016  Score=50.71  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            48999999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.42  E-value=0.0019  Score=50.40  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.42  E-value=0.0021  Score=53.10  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|.++.|-|+.||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3689999999999999999999999984

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.41  E-value=0.0018  Score=52.52  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.|.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368899999999999999999865

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.40  E-value=0.0019  Score=50.46  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456788999999999999999998874

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.39  E-value=0.0012  Score=51.93  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.39  E-value=0.0019  Score=51.54  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+|+|+.|+|||||++.+.+-.
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.38  E-value=0.0017  Score=50.89  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.38  E-value=0.002  Score=51.57  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            358999999999999999998864

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.37  E-value=0.0017  Score=56.38  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            356789999999999999999999883

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.36  E-value=0.002  Score=52.42  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-..++|+|+.|+|||||++.|++.+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999999876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.36  E-value=0.002  Score=50.93  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998864

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.36  E-value=0.0018  Score=51.02  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998853

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.35  E-value=0.0027  Score=52.92  Aligned_cols=28  Identities=39%  Similarity=0.557  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ....-+.|.||+|+|||||++.++..+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455688999999999999999999873

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.35  E-value=0.0021  Score=50.90  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999999854

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.34  E-value=0.0021  Score=50.31  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            357999999999999999998753

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.33  E-value=0.0022  Score=50.13  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.33  E-value=0.002  Score=51.26  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998764

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.32  E-value=0.002  Score=51.10  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCC
Confidence            358999999999999999998843

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.32  E-value=0.00099  Score=56.10  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=25.8

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..+....|  +.|.||+|+|||||++.|+....
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            3444444555  77999999999999999999874

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.32  E-value=0.002  Score=57.59  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.|.+..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999974

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.30  E-value=0.0019  Score=55.99  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|.+|+|||||++.|.|.-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999999863

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.29  E-value=0.0019  Score=56.02  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -+|+|+|+.|+|||||++.|.|.-
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            489999999999999999999864

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.29  E-value=0.0023  Score=51.13  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.+.|..
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~~   30 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGVH   30 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            58999999999999999999853

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.28  E-value=0.0024  Score=50.46  Aligned_cols=23  Identities=17%  Similarity=0.205  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.27  E-value=0.0025  Score=50.57  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58899999999999999998754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.26  E-value=0.0012  Score=55.64  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.+|+|.|+.||||||+++.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            567899999999999999999998776

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.25  E-value=0.0022  Score=51.34  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            4468999999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.25  E-value=0.0023  Score=50.80  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57999999999999999999865

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.25  E-value=0.0023  Score=50.00  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999854

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.25  E-value=0.0027  Score=56.64  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      |..++|+|.+|+|||||++.|.+.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999984

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0027  Score=50.59  Aligned_cols=24  Identities=25%  Similarity=0.426  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            458999999999999999998853

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.23  E-value=0.0023  Score=51.68  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.+.+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.23  E-value=0.0026  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998754

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.21  E-value=0.0024  Score=55.52  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.5

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -+++|+++.|.||+|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999999988875

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.21  E-value=0.0027  Score=50.37  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        25 ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           25 KIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998864

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.21  E-value=0.0021  Score=54.34  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|..|+|||||++.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.21  E-value=0.0028  Score=50.03  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.20  E-value=0.002  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHH
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++.-.++|+|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999998874

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.20  E-value=0.0028  Score=50.67  Aligned_cols=25  Identities=24%  Similarity=0.327  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhCC
Confidence            4568999999999999999998754

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.19  E-value=0.0025  Score=51.13  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.19  E-value=0.0025  Score=51.31  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++.|.-..--.++|+|+.|+|||||++.+.+-.
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence            4444444444578999999999999999998854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.17  E-value=0.0023  Score=53.67  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.|+|+|+.|+|||||++.|.|..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.17  E-value=0.0022  Score=49.97  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58899999999999999998854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.17  E-value=0.0029  Score=50.81  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..-.|+|+|+.|+|||||++.+.+-.
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34568999999999999999998754

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.16  E-value=0.0024  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.197  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.15  E-value=0.0031  Score=58.02  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=29.1

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus       142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            3443 5666899999999999999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.14  E-value=0.0032  Score=49.91  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            358999999999999999988754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.13  E-value=0.0031  Score=51.95  Aligned_cols=25  Identities=36%  Similarity=0.490  Sum_probs=22.6

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHH
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +++|+++.|.|++|+|||||+-.++
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999987654

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.12  E-value=0.004  Score=48.50  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358899999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.12  E-value=0.0029  Score=51.26  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999999864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.11  E-value=0.0028  Score=53.55  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.|.|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.11  E-value=0.0016  Score=52.19  Aligned_cols=23  Identities=43%  Similarity=0.408  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.+.+..
T Consensus        25 ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           25 KVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHTCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            68999999999999999987643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.09  E-value=0.0044  Score=50.62  Aligned_cols=26  Identities=35%  Similarity=0.667  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      |.+|+|=|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999998874

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.07  E-value=0.0026  Score=50.21  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3456899999999999999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.07  E-value=0.0023  Score=58.37  Aligned_cols=26  Identities=38%  Similarity=0.617  Sum_probs=23.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+++|+|++|+||||++..|++.+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36999999999999999999999884

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.06  E-value=0.0037  Score=49.94  Aligned_cols=32  Identities=25%  Similarity=0.163  Sum_probs=24.9

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++..-+.+ .|.-+.|.|+||+|||||+..|..
T Consensus         7 lHas~v~v-~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            7 WHANFLVI-DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34444454 488899999999999999887765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.05  E-value=0.0039  Score=50.27  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            368899999999999999998754

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.04  E-value=0.0024  Score=51.20  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIENK   49 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC--
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999987643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.03  E-value=0.0033  Score=49.42  Aligned_cols=26  Identities=19%  Similarity=0.130  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44568999999999999999988643

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.02  E-value=0.0037  Score=50.95  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +-..++|+|..|+|||||++.++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34678999999999999999998875

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.02  E-value=0.002  Score=54.81  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|.+|+|||||++.|.+.-
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999987643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.02  E-value=0.0024  Score=50.20  Aligned_cols=24  Identities=29%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~~   45 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMNE   45 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.99  E-value=0.0036  Score=50.18  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999999854

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.98  E-value=0.0032  Score=53.67  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|..|+|||||++.|.|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.98  E-value=0.0016  Score=52.92  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.|.+..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998763

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.97  E-value=0.0023  Score=50.94  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            48899999999999999987643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.96  E-value=0.0039  Score=49.41  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998763

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.96  E-value=0.0032  Score=50.90  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+|+|+.|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999988643

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.95  E-value=0.0032  Score=54.21  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.|.|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999863

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.95  E-value=0.0049  Score=53.04  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=24.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++....+.|.||+|+|||+|++.|+..+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34456788889999999999999999874

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.95  E-value=0.0044  Score=55.06  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999999888766

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.94  E-value=0.0023  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=9.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999988653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.94  E-value=0.0031  Score=51.68  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3568999999999999999988753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.92  E-value=0.0053  Score=49.21  Aligned_cols=25  Identities=24%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +|.++.+.||.|+||||++..++..
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999997444433

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.92  E-value=0.0019  Score=51.11  Aligned_cols=24  Identities=21%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           22 VHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             cEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998765

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.92  E-value=0.0026  Score=50.40  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.|+|+|+.|+|||||++.+.+..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468999999999999999987754

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.92  E-value=0.0016  Score=59.63  Aligned_cols=31  Identities=42%  Similarity=0.652  Sum_probs=25.2

Q ss_pred             eecCCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          102 SNVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Ge--iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -.+..|.  .+.|.||+|+|||||++.|+....
T Consensus        43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3344455  488999999999999999999874

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.91  E-value=0.0052  Score=52.59  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.-+.|.||+|+|||||++.++..+.
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            3455789999999999999999998874

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.90  E-value=0.0035  Score=50.00  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446899999999999999998864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.87  E-value=0.0063  Score=53.80  Aligned_cols=27  Identities=37%  Similarity=0.576  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ....+++|+|+.|+|||||+..|++.+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999887

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.87  E-value=0.0052  Score=46.94  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..+.-+.|.||+|+|||++++.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            445668999999999999999999876

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.87  E-value=0.0052  Score=51.26  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -.+||+|+.||||||+.+.|+..+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.86  E-value=0.0033  Score=51.00  Aligned_cols=22  Identities=32%  Similarity=0.386  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus        36 ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           36 KVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.86  E-value=0.0045  Score=49.67  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            58999999999999999998753

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.0053  Score=49.07  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38999999999999999999876

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0052  Score=50.08  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.82  E-value=0.0063  Score=53.09  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+..-+.|.||.|+|||||++.++..+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            455778999999999999999999987

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.82  E-value=0.0036  Score=49.92  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            358899999999999999888754

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.76  E-value=0.0051  Score=49.48  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+.
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.74  E-value=0.0058  Score=49.65  Aligned_cols=24  Identities=17%  Similarity=0.243  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECcCCCCHHHHHHHHhcCC
Confidence            468899999999999999998753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.71  E-value=0.0062  Score=50.00  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++...+.|.||.|+||||++..|+..+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            55556799999999999999999999883

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.70  E-value=0.0074  Score=57.00  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=24.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.|.+|.|.|++||||||+.+.|+..+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999887

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0052  Score=50.31  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|++|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999998864

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.68  E-value=0.0045  Score=52.71  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|..|+|||||++.|.|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            468999999999999999999864

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.67  E-value=0.0065  Score=56.55  Aligned_cols=29  Identities=7%  Similarity=0.061  Sum_probs=26.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|.++.|+|.+||||||+.+.|+..+.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            35688999999999999999999999994

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.66  E-value=0.0058  Score=49.13  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.66  E-value=0.0023  Score=51.05  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=4.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998876

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.65  E-value=0.0053  Score=51.76  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|..|+|||||++.|.|..
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999854

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.62  E-value=0.0066  Score=53.59  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.-+.|.||+|+||||+++.|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            355688999999999999999999873

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.62  E-value=0.0054  Score=51.90  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++++|+.|+|||||++.|.+..
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999998754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.61  E-value=0.0073  Score=51.42  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=23.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.-+.|.||+|+||||+++.++..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999884

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.61  E-value=0.028  Score=54.63  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|.||+|+|||++++.|+..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999999987

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.60  E-value=0.0081  Score=57.26  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=24.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.+|.|.|.+||||||+++.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999887

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.58  E-value=0.0057  Score=51.92  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ..++|+|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            578999999999999999999865

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.56  E-value=0.0075  Score=52.93  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=25.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|..+.|.||+|+|||||++.++..+.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999999983

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.56  E-value=0.0087  Score=50.47  Aligned_cols=28  Identities=39%  Similarity=0.539  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ....-+.|.||+|+|||||++.++....
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4456788999999999999999999863

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.53  E-value=0.0081  Score=47.76  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            345689999999999999998864

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.50  E-value=0.0097  Score=52.57  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ....-+.|.||+|+|||||++.|+..+.
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            4566799999999999999999998873

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.49  E-value=0.0023  Score=51.83  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.|.+.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999988754

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.46  E-value=0.01  Score=51.51  Aligned_cols=28  Identities=43%  Similarity=0.557  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..-+.|.||+|+|||+|++.++....
T Consensus        49 ~~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           49 KPTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            3456689999999999999999998874

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.44  E-value=0.0097  Score=52.33  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999887

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.43  E-value=0.0076  Score=52.85  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -+.+|.++.|.||.|+|||||+..++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4667888999999999999999998765

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.36  E-value=0.0049  Score=56.42  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.|+|+|++|+|||||++.|.|..
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998753

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.35  E-value=0.0053  Score=48.35  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            345689999999999999998854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.011  Score=53.75  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=25.1

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+..=+.|.||+|+|||+|++.|++.+.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45555688999999999999999999884

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.32  E-value=0.011  Score=48.05  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .-+|+|.|+.||||||+.+.|+..+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999999884

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.011  Score=53.88  Aligned_cols=30  Identities=40%  Similarity=0.566  Sum_probs=25.7

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.+..=+.|.||+|+|||+|++.|++...
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            355566688999999999999999999874

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.30  E-value=0.013  Score=54.71  Aligned_cols=26  Identities=19%  Similarity=0.479  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ...+|.++|.+||||||+.+.|+..+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998776

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.011  Score=53.80  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=25.8

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+.+..=+.|-||+|+|||+|++.|++...
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            355566788999999999999999999884

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.28  E-value=0.053  Score=57.90  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|+.+.|.||+|+|||||+..++...
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999999887765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.27  E-value=0.013  Score=50.91  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-+.|.||.|+|||+|++.|+..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.25  E-value=0.013  Score=54.40  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+..+|+|+|++|+||||++..|+..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999998774

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.22  E-value=0.011  Score=52.16  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..-+.|.||.|+|||||++.|+..+.
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            445588999999999999999999874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.20  E-value=0.011  Score=54.02  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+.|.||+|+||||+++.|+..+.
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            478999999999999999999984

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.20  E-value=0.014  Score=53.59  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ...+|.++|.+||||||+.+.|+..+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.19  E-value=0.011  Score=51.22  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.|.||+|+|||||++.|+....
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999998874

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.16  E-value=0.012  Score=52.09  Aligned_cols=26  Identities=31%  Similarity=0.631  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...+.|.||+|+||||+++.|+..+.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999873

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=95.14  E-value=0.014  Score=54.80  Aligned_cols=27  Identities=37%  Similarity=0.410  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+.++.|.|++||||||+.+.|+..+
T Consensus       370 ~~~~~I~l~G~~GsGKSTia~~La~~L  396 (546)
T 2gks_A          370 KQGFCVWLTGLPCAGKSTIAEILATML  396 (546)
T ss_dssp             GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence            347899999999999999999999876

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.12  E-value=0.0078  Score=48.84  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHH-HHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAE-VVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~-L~gll  131 (255)
                      .++|+|+.|+|||||++. +.+..
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            589999999999999998 66654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	7e-18
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	2e-14
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	1e-13
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	6e-11
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	5e-09
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	4e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-05
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	3e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	4e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	6e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.001
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.001
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.003
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.004
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.004
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.004

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 79.0 bits (194), Expect = 7e-18
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 23/154 (14%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+ +AG    GKST A  +   +++             +   V  ++  DGF      L 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
                +    ++G P +++   L+  + +L++   +V AP + H + D + D     +Q 
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185

Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEKW 255
            ++I++G  +   G  +        VS   D   
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 219

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST+        ++I+ ++             A  +  D FH + 
Sbjct: 2   KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47

Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
            + + A  D + A         +        L    +     G     ++ H   +    
Sbjct: 48  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107

Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  G             ++  +G +  +      +++ + D K 
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKI 151

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (161), Expect = 1e-13
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 26/166 (15%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60

Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
                          +D F+L       + +  + +     RG P T +  LL   L  +
Sbjct: 61  ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110

Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
            N              Y  S   G GD       + L   + I++G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 6e-11
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +                    +L  D F+  L+   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             +  K        P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 55  KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           VV+ +G   F      ++V  +F  K 
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKL 135

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.5 bits (124), Expect = 5e-09
 Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 22/173 (12%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
                      V  MD   +  ++     + +               L     + L+   
Sbjct: 54  ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  P +DH   D      +      +++++G +L            ++ +  
Sbjct: 102 QLTLPFYDH-ETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCP 153

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIW 135
           +  
Sbjct: 80  REG 82

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.2 bits (87), Expect = 3e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
             ++ L G   AGKS +   +   +    P+   +F        +   +      +    
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNC 194
              +    E  A  GA       +    
Sbjct: 59  DGGVSIGPEFRALEGAWAEGVVAMARAG 86

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++    K  
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78

Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
               Q                L + Q       + A A  
Sbjct: 79  LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +V + G PG G +T +   +  + K
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK 27

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 35.3 bits (80), Expect = 0.004
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 89  ALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
              ++      L      K  +V L G  GAGK+TL   +++ I      K+ ++
Sbjct: 16  RFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.98
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.97
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.46
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.35
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.29
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	99.16
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.14
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.91
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.8
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	98.15
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.94
d1okkd2	207	GTPase domain of the signal recognition particle r	97.93
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.93
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.91
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.91
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.89
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.85
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.84
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.82
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.8
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.79
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.77
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.77
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.75
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.74
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.72
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.66
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.66
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.65
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.64
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.64
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.57
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.57
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.55
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.5
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.49
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.45
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.41
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.37
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.33
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.31
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.3
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.3
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.28
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.24
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.24
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.24
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.23
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.23
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.22
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.22
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.2
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.2
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.18
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.17
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.17
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.15
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.15
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.11
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.09
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.08
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.03
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.03
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.03
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.02
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.01
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.99
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.99
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.98
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.97
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.96
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.95
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.94
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.93
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.92
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.91
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.9
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.87
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.81
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.79
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.76
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.75
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.74
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.74
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.73
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.69
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.68
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.68
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.68
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.65
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.65
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.61
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.6
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.57
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.57
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.54
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.54
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.5
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.5
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.49
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.48
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.46
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.42
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.41
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.4
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.38
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.38
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.37
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.34
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.34
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.33
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.31
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.3
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.3
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.3
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.3
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.28
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.27
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.22
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.22
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.18
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.14
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.12
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.12
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.06
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.06
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.05
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.03
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.02
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.02
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.02
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.0
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.0
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.95
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.93
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.91
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.89
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.89
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.89
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.87
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.83
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.83
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.82
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.81
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.76
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.74
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.74
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.72
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.7
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.66
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.66
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.65
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.63
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.58
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.56
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.45
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	95.44
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.44
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.43
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.4
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.39
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.38
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.38
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.31
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.3
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.29
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.29
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.22
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.16
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.15
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.09
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.07
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.89
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.81
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.68
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.45
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.41
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.34
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	94.25
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.99
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.95
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.94
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.93
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.93
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.87
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.72
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.53
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	93.23
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.17
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.12
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	93.1
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.96
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	92.89
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.79
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.74
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.6
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.52
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	92.49
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.4
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	92.06
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.97
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.76
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.47
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.4
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	91.38
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.34
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.28
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	91.27
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.1
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.75
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.59
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.26
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.95
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	89.88
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.75
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.37
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.85
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.7
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	88.54
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	88.4
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.38
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	88.37
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.81
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.7
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	87.41
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	87.18
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	86.95
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	86.88
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	85.84
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.6
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	84.94
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.42
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	83.87
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	83.76
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	80.94
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	80.79
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	80.26

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=8.2e-41  Score=281.82  Aligned_cols=170  Identities=12%  Similarity=0.136  Sum_probs=138.8

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |..|+++||+|+|++..    ||++|||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus         4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence            66799999999999865    8899999999999999999999999999999999998   99999 4666322      


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~  225 (255)
                      ....|. ++++.. ++ ..+++.++..+.....+.+.......+.++++.+++.  .+.++.+||||||||+++||||+.
T Consensus        77 ~r~ig~-v~Q~~~-l~-~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          77 DRNISM-VFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             cceEEE-Eeechh-hc-ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence            223565 676653 22 2378888877665555655444556678899999886  578888999999999999999999


Q ss_pred             CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++||+||||++||+..+.++++++.+.
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l  182 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKL  182 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceeecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.3e-40  Score=281.04  Aligned_cols=170  Identities=14%  Similarity=0.125  Sum_probs=145.0

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |+.|+++||+|.|++..    ||+||||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus         1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence            67899999999998865    8899999999999999999999999999999999998   99999 4665321      


Q ss_pred             ------CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhh
Q 025256          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ------~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~  219 (255)
                            +...|. ++++.. ++ +.+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+||+++
T Consensus        74 ~~~~~~~r~ig~-v~Q~~~-L~-~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          74 IFVPPKDRDIAM-VFQSYA-LY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             EECCGGGSSEEE-ECSCCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hhccccccccee-cccchh-hc-chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence                  234565 666653 22 3479999999888888876555566788999999886  467788999999999999


Q ss_pred             hhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+.+|++||+||||++||+..+.+++++|.+.
T Consensus       151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l  185 (240)
T d1g2912         151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL  185 (240)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.4e-40  Score=277.05  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=110.0

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CCC
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++||+|+|++..    +|+||||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...      +..
T Consensus         1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence            68999999998865    8899999999999999999999999999999999998   99999 4666432      223


Q ss_pred             eeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCCc
Q 025256          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~~  228 (255)
                      .|. ++++.. ++ ..+++.++..+.....+++.+.....+.++++.+++.  .+.++.+|||||+||+++||||+.+|+
T Consensus        74 ig~-v~Q~~~-l~-~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~  150 (232)
T d2awna2          74 VGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS  150 (232)
T ss_dssp             EEE-ECSSCC-C----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred             eee-eccccc-cc-cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            565 666653 22 3489999998887777777666667789999998886  467888999999999999999999999


Q ss_pred             EEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          229 VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       229 ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||||++||+..+++++++|.+.
T Consensus       151 illlDEPts~LD~~~~~~i~~~l~~l  176 (232)
T d2awna2         151 VFLLDEPLSNLDAALRVQMRIEISRL  176 (232)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-40  Score=277.18  Aligned_cols=172  Identities=17%  Similarity=0.167  Sum_probs=146.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++||+|.|+.....+.||+||||+|++||+++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence            58999999999876445668999999999999999999999999999999999998   99999 56664321       


Q ss_pred             ----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhh
Q 025256          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~  222 (255)
                          ...|. ++++. .++ ..+++.++..+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++|||
T Consensus        78 ~~~rr~ig~-VfQ~~-~l~-~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAra  154 (240)
T d3dhwc1          78 TKARRQIGM-IFQHF-NLL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (240)
T ss_dssp             HHHHHHEEE-CCSSC-CCC-TTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred             hhhhccccc-ccccc-ccC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhh
Confidence                13455 67665 333 3478999998888777887766677889999999886  566788999999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+..+.+++++|.+.
T Consensus       155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l  186 (240)
T d3dhwc1         155 LASNPKVLLCDEATSALDPATTRSILELLKDI  186 (240)
T ss_dssp             HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEeccccccCCHHHhhHHHHHHHHH
Confidence            99999999999999999999999999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.6e-40  Score=279.00  Aligned_cols=172  Identities=15%  Similarity=0.166  Sum_probs=143.4

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |..|+++||+|+|+..  .+.+|+||||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence            5679999999999652  2347899999999999999999999999999999999998   99999 4666321      


Q ss_pred             -----CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhh
Q 025256          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a  220 (255)
                           +...|. ++++.. ++ +.+++.+|+.+.....+++.......+.++++.+++.  .+.++.+|||||+|||++|
T Consensus        76 ~~~~~rr~ig~-vfQ~~~-L~-p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          76 IVPPEDRKIGM-VFQTWA-LY-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             SSCGGGSCEEE-EETTSC-CC-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             hcchhhccceE-Eecccc-cc-ccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence                 224565 677653 22 3479999988876666665555556788999999886  5778889999999999999


Q ss_pred             hhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+.+|++||+||||++||+..+.+++++|.+.
T Consensus       153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l  186 (242)
T d1oxxk2         153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEV  186 (242)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             hHHhhcccceeecCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.8e-39  Score=270.50  Aligned_cols=172  Identities=14%  Similarity=0.140  Sum_probs=138.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++||+|.|+...+.+.||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence            58999999999876555668999999999999999999999999999999999998   99999 56664321       


Q ss_pred             -----CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCC---CcHHHHHHHHHhhcCC---CCCCCCCCCccccchh
Q 025256          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT---FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -----~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~---~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (255)
                           ...|. ++++....  +.+++.++..+..........   .....+.++++.+++.   .+.++.+|||||+|||
T Consensus        78 ~~~r~~~ig~-v~Q~~~l~--~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv  154 (230)
T d1l2ta_          78 TKIRRDKIGF-VFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (230)
T ss_dssp             HHHHHHHEEE-ECTTCCCC--TTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             chhhcceEEE-EecchhhC--cCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHH
Confidence                 12455 77765322  237888888776554433221   2233456777777775   3567789999999999


Q ss_pred             hhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||||+.+|++||+||||++||+..++++++++.+.
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l  191 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL  191 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999763

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1.2e-38  Score=266.87  Aligned_cols=164  Identities=15%  Similarity=0.202  Sum_probs=138.6

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC------CC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ||+++||+|+|++.     +|+||||+|++||+++|+||||||||||+|+|+|+++   |++|+ .++|...      +.
T Consensus         1 mi~v~nlsk~y~~~-----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEeCCE-----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence            58999999999762     7899999999999999999999999999999999998   99999 4666432      12


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..|. ++++.. ++ +.+++.+|..+.....+..   ......++++.+++.  .+.++.+|||||+|||++||||+.+|
T Consensus        73 ~ig~-v~Q~~~-l~-~~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P  146 (229)
T d3d31a2          73 DIAF-VYQNYS-LF-PHMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (229)
T ss_dssp             TCEE-ECTTCC-CC-TTSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             ccee-eccccc-cC-ccccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccC
Confidence            4565 676653 33 3479999998887776654   346788889988886  56677899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+||||++||+..++++++++.+.
T Consensus       147 ~iLllDEPts~LD~~~~~~i~~~l~~l  173 (229)
T d3d31a2         147 KILLLDEPLSALDPRTQENAREMLSVL  173 (229)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             CceeecCCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.5e-37  Score=265.59  Aligned_cols=168  Identities=15%  Similarity=0.157  Sum_probs=136.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      .|+++||+|.|++..    +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence            589999999998865    8899999999999999999999999999999999998   99999 56664321       


Q ss_pred             --------------CCeeEEEecCCCCCcCccCCcccChHHHH-HhcCCCCCCcHHHHHHHHHhhcCC---CCCCCCCCC
Q 025256          149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (255)
Q Consensus       149 --------------~~~g~~i~~d~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS  210 (255)
                                    ...|. ++++.. ++ ..+++.++..+.. ...+.+.........++++.+++.   .+.++.+||
T Consensus        75 ~~~~~~~~~~~~~r~~ig~-vfQ~~~-l~-~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LS  151 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTM-VFQHFN-LW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS  151 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEE-ECSSCC-CC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred             hcccccHhHHHHHhcceEE-EEechh-hc-cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccccc
Confidence                          12444 666543 22 3367778776643 344444444456678889998885   345678999


Q ss_pred             ccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+|||++||+|+.+|++||+||||++||+..+++++++|.+.
T Consensus       152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l  195 (258)
T d1b0ua_         152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL  195 (258)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-37  Score=261.74  Aligned_cols=167  Identities=13%  Similarity=0.094  Sum_probs=136.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC-------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      .|+++||+|+|++..    +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|...       +
T Consensus         2 aI~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~   74 (238)
T d1vpla_           2 AVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR   74 (238)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred             CEEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence            378999999999866    8899999999999999999999999999999999998   99999 4565322       2


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccC
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~  226 (255)
                      ...+. ++++...  ...+++.++..+....++.........+..+++.+++.  .+.++..||+||+||+++|++|+.+
T Consensus        75 ~~i~~-vpq~~~~--~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~  151 (238)
T d1vpla_          75 KLISY-LPEEAGA--YRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  151 (238)
T ss_dssp             TTEEE-ECTTCCC--CTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             hhEeE-eeecccc--CCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            34555 5554422  23478888887777666654433445567778877775  4567889999999999999999999


Q ss_pred             CcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+..++++++++.+
T Consensus       152 p~illLDEPt~gLD~~~~~~i~~~i~~  178 (238)
T d1vpla_         152 PRLAILDEPTSGLDVLNAREVRKILKQ  178 (238)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999975

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.6e-37  Score=263.84  Aligned_cols=170  Identities=15%  Similarity=0.146  Sum_probs=132.1

Q ss_pred             cceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC----
Q 025256           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (255)
Q Consensus        75 ~~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~----  149 (255)
                      |.+|+++||+|.|++.+    +|+||||++++||++||+||||||||||+|+|+|+++   |++|+ .++|.....    
T Consensus         2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence            78999999999999866    8899999999999999999999999999999999998   99999 566643211    


Q ss_pred             -----CeeEEEecCCCCCcCccCCcccChHHHHH------------hcCCCCC-CcHHHHHHHHHhhcCC--CCCCCCCC
Q 025256          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHA------------RRGAPWT-FNPLLLLNCLKNLRNQ--GSVYAPSF  209 (255)
Q Consensus       150 -----~~g~~i~~d~~~~~~~~l~~~e~~~~~~~------------~~g~~~~-~~~~~~~~~l~~l~l~--~~~~~~~l  209 (255)
                           ..+. ++++...  ...+++.+|......            ....... .......++++.+++.  .+.++..|
T Consensus        75 ~~~~~gi~~-v~Q~~~~--~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  151 (254)
T d1g6ha_          75 ELYHYGIVR-TFQTPQP--LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  151 (254)
T ss_dssp             HHHHHTEEE-CCCCCGG--GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHHhcCCc-cCCcccc--CCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhC
Confidence                 1233 4554432  233677776644211            1111211 1224556778877765  45678899


Q ss_pred             CccccchhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+|||++||+|+.+|++||+||||++||+..++++++++.+.
T Consensus       152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l  196 (254)
T d1g6ha_         152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL  196 (254)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=4.9e-37  Score=259.94  Aligned_cols=169  Identities=18%  Similarity=0.174  Sum_probs=127.2

Q ss_pred             ceEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC-----
Q 025256           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-----  149 (255)
Q Consensus        76 ~~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~-----  149 (255)
                      .+|+++||+|.|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|.....     
T Consensus         5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~   77 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence            4899999999999865    8899999999999999999999999999999999998   99999 566643211     


Q ss_pred             --CeeEE-EecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHh---hcCCCCCCCCCCCccccchhhhhhhh
Q 025256          150 --DVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---LRNQGSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 --~~g~~-i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---l~l~~~~~~~~lS~G~~qrv~~a~~l  223 (255)
                        ..|.. ++++. .++ +.+++.++........ ............+++.   +.-..+.++.+||||||||+++|+||
T Consensus        78 ~~r~gi~~~~q~~-~l~-~~ltv~en~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL  154 (240)
T d1ji0a_          78 INRMGIALVPEGR-RIF-PELTVYENLMMGAYNR-KDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRAL  154 (240)
T ss_dssp             HHHTTEEEECSSC-CCC-TTSBHHHHHHGGGTTC-CCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHH
T ss_pred             HHHhcccccCccc-ccC-CcccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHH
Confidence              12322 33332 222 3477777654432211 1221122223344443   33346777889999999999999999


Q ss_pred             ccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+..+.++++++.+.
T Consensus       155 ~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l  185 (240)
T d1ji0a_         155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKI  185 (240)
T ss_dssp             TTCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HhCCCEeeecCCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=2.4e-36  Score=249.29  Aligned_cols=165  Identities=16%  Similarity=0.194  Sum_probs=129.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC---CCCee
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~---~~~~g  152 (255)
                      .|+++||++.|+. .    +|+++||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...   +...+
T Consensus         2 ~lev~~ls~~y~~-~----vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             eEEEEEEEEEeCC-e----EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence            5899999999963 3    6799999999999999999999999999999999998   99999 4666432   12222


Q ss_pred             EEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC-CCCCCCCCCccccchhhhhhhhccCCcEEE
Q 025256          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       153 ~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ili  231 (255)
                      . ++++..  ....+++.++.......++..  .+...+.+.++.+.+. .+.++.+||+||+||+++|++++.+|+++|
T Consensus        74 ~-~~~~~~--~~~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~lll  148 (200)
T d1sgwa_          74 F-LPEEII--VPRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV  148 (200)
T ss_dssp             E-ECSSCC--CCTTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             E-Eeeccc--CCCCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEE
Confidence            2 333322  223356666666655555543  3445667778877753 456677999999999999999999999999


Q ss_pred             EeCCCCCCChHHHHHHHHHHHhh
Q 025256          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||+..++++++.+.+.
T Consensus       149 lDEPt~gLD~~~~~~i~~~l~~~  171 (200)
T d1sgwa_         149 LDDPVVAIDEDSKHKVLKSILEI  171 (200)
T ss_dssp             EESTTTTSCTTTHHHHHHHHHHH
T ss_pred             EcCcccccCHHHHHHHHHHHHHH
Confidence            99999999999999998887653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.7e-34  Score=244.57  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=122.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC--------C
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------K  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~--------~  147 (255)
                      ||+++||+++|++.. .  +|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++..        .
T Consensus         1 mle~knvsf~Y~~~~-~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDSE-Q--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSSS-C--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCCC-c--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence            589999999997632 2  6799999999999999999999999999999999998   99999 466632        1


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCCC---------C----CCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---------~----~~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   .++.+|.     .++.............++...+..         +    .....||||||
T Consensus        75 r~~i~~-v~Q~~~lf~---~ti~eNi-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk  145 (242)
T d1mv5a_          75 RSQIGF-VSQDSAIMA---GTIRENL-----TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (242)
T ss_dssp             TTTCCE-ECCSSCCCC---EEHHHHT-----TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HhheEE-EccccccCC---cchhhhe-----ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence            334555 777765322   2333332     123333344555555555444321         1    12346999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+|+|||+||||++||+.+.++++++|.+
T Consensus       146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (242)
T d1mv5a_         146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS  184 (242)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.5e-34  Score=241.73  Aligned_cols=162  Identities=12%  Similarity=0.128  Sum_probs=126.8

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCC------CCC
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KPP  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~------~~~  149 (255)
                      .+++ ++.|+|++..      -||||++. +|+++|+||||||||||+|+|+|+++   |++|+ .++|..      .+.
T Consensus         2 ~l~v-~~~k~~g~~~------~~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r   70 (240)
T d2onka1           2 FLKV-RAEKRLGNFR------LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CEEE-EEEEEETTEE------EEEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             EEEE-EEEEEECCEE------EEEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence            3677 6789998854      38999995 68999999999999999999999998   99999 466632      123


Q ss_pred             CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhccCC
Q 025256          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~~~  227 (255)
                      ..|. ++++.. ++ +.+++.+|+.+..  ...........+.++++.+++.  .+.++.+|||||+|||++||||+.+|
T Consensus        71 ~ig~-v~Q~~~-l~-~~ltV~enl~~~l--~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P  145 (240)
T d2onka1          71 GIGF-VPQDYA-LF-PHLSVYRNIAYGL--RNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP  145 (240)
T ss_dssp             CCBC-CCSSCC-CC-TTSCHHHHHHTTC--TTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             Ccee-eccchh-hc-ccchhhHhhhhhh--cccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccC
Confidence            4565 666643 22 2478888776532  1222222345678889888886  56778899999999999999999999


Q ss_pred             cEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+||||++||+..+.++++++.+.
T Consensus       146 ~illlDEPts~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1         146 RLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             SSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             CceEecCccccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998763

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-34  Score=241.59  Aligned_cols=164  Identities=18%  Similarity=0.151  Sum_probs=121.2

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++.. ...+|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus        11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred             eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence            499999999997642 3347899999999999999999999999999999999998   99999 4666322        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHH---------HHHHhhcCCC----CCCCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~l~~----~~~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   .++.+|..     ++...........         +.++.+..+.    ......|||||+
T Consensus        87 r~~i~~-v~Q~~~lf~---~tv~eni~-----~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk  157 (251)
T d1jj7a_          87 HRQVAA-VGQEPQVFG---RSLQENIA-----YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR  157 (251)
T ss_dssp             HHHEEE-ECSSCCCCS---SBHHHHHH-----CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred             HHHhhh-ccccccccC---cchhhhhh-----hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence            122343 677665322   24444332     3332222222222         2333332222    234568999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+|+|||+||||++||+....++.++|.+
T Consensus       158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999865

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.4e-33  Score=240.34  Aligned_cols=163  Identities=15%  Similarity=0.119  Sum_probs=122.0

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC-------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      -|+++||++.|++.  ...+|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus        13 ~I~~~nvsf~Y~~~--~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGR--EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSS--SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEeCCC--CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence            48999999999863  2337799999999999999999999999999999999998   99999 46663321       


Q ss_pred             -CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhc---------CCC----CCCCCCCCcccc
Q 025256          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQG----SVYAPSFDHGVG  214 (255)
Q Consensus       149 -~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~----~~~~~~lS~G~~  214 (255)
                       ...+. ++++.....   .+..++.     .++.+.....+.+.++++...         .+.    ..+...|||||+
T Consensus        88 r~~i~~-v~Q~~~l~~---~ti~~n~-----~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqk  158 (253)
T d3b60a1          88 RNQVAL-VSQNVHLFN---DTVANNI-----AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR  158 (253)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHH-----HTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred             hheEEE-EeeccccCC---cchhhhh-----hhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHH
Confidence             22344 666664332   2332222     234334445555544443332         222    234568999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+|+|||+||||++||+...+.+.+.|.+
T Consensus       159 QRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  197 (253)
T d3b60a1         159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  197 (253)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=7.6e-33  Score=233.94  Aligned_cols=161  Identities=14%  Similarity=0.113  Sum_probs=120.5

Q ss_pred             EEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCC--------
Q 025256           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      |+++||++.|++..+.  +|+||||+|++|+++||+||||||||||+++|+|++.   |++|+ .++|....        
T Consensus         2 I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred             eEEEEEEEEeCCCCcc--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence            6899999999653222  6799999999999999999999999999999999998   99999 46664321        


Q ss_pred             CCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CC----CCCCCCCCccccc
Q 025256          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~----~~~~~~lS~G~~q  215 (255)
                      ...+. ++++.....   .++.+|+.+     + ......+.....++..++         +.    ......|||||+|
T Consensus        77 ~~i~~-v~Q~~~lf~---~Ti~eNi~~-----~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~Q  146 (241)
T d2pmka1          77 RQVGV-VLQDNVLLN---RSIIDNISL-----A-NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ  146 (241)
T ss_dssp             HHEEE-ECSSCCCTT---SBHHHHHCT-----T-STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHH
T ss_pred             ceEEE-EecccccCC---ccccccccc-----c-CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHH
Confidence            22444 777765322   354444322     1 122334444444443322         11    2345689999999


Q ss_pred             hhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++||||+.+|+|||+||||++||+...+++.+.|.+
T Consensus       147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.97  E-value=1.3e-32  Score=234.17  Aligned_cols=163  Identities=13%  Similarity=0.082  Sum_probs=123.1

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCC--------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||+++|++....  +|+||||+|++|+++||+||||||||||+++|+|++.   |++|+ .+++...        
T Consensus        16 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             EEEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHh
Confidence            38999999999774323  6799999999999999999999999999999999998   99999 4666321        


Q ss_pred             CCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcC---------CCCC----CCCCCCcccc
Q 025256          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (255)
                      +...+. ++++.+...   .++.+|+.+     +.+. ...+.+.++++..++         +.+.    ....|||||+
T Consensus        91 r~~i~~-v~Q~~~lf~---~Ti~eNi~~-----g~~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  160 (255)
T d2hyda1          91 RNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK  160 (255)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred             hheeee-eeccccCCC---CCHHHHHhc-----cCcC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHH
Confidence            123454 677665332   365555532     2222 234444555554433         2222    2347999999


Q ss_pred             chhhhhhhhccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~~a~~l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||||+.+|+|||+||||++||+...+.+.+.|.+.
T Consensus       161 QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l  200 (255)
T d2hyda1         161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  200 (255)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-32  Score=230.87  Aligned_cols=159  Identities=19%  Similarity=0.120  Sum_probs=118.4

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcc-ccCCCCCCC------
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP------  149 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~-~~~~~~~~~------  149 (255)
                      +++++||+++|        +|++|||+|++||++||+||||||||||+++|+|+.    |++|+ .++|+....      
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~~   70 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATKL   70 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHHH
Confidence            68999998765        579999999999999999999999999999999976    88999 466643211      


Q ss_pred             -CeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC--CCCCCCCCCccccchhhhhhhhcc-
Q 025256          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL-  225 (255)
Q Consensus       150 -~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~~a~~l~~-  225 (255)
                       ....++.+.....+.  .++.++    . ..+.......+...++++.+++.  .+.++..|||||+||+++|++++. 
T Consensus        71 ~~~~~~~~~~~~~~~~--~~v~~~----~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~  143 (231)
T d1l7vc_          71 ALHRAYLSQQQTPPFA--TPVWHY----L-TLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQI  143 (231)
T ss_dssp             HHHEEEECSCCCCCSS--CBHHHH----H-HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HhhceeeeccccCCcc--ccHHHH----h-hhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhh
Confidence             012224443322111  122111    1 12223334556677888888775  456677999999999999999986 


Q ss_pred             ------CCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          226 ------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ------~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                            +|++||+||||++||+..+..+.+++.+.
T Consensus       144 ~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l  178 (231)
T d1l7vc_         144 TPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL  178 (231)
T ss_dssp             CTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHH
T ss_pred             CcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence                  67999999999999999999999998763

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=4.4e-30  Score=221.68  Aligned_cols=149  Identities=11%  Similarity=0.075  Sum_probs=105.7

Q ss_pred             eEEEccceeeccccccccccccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccc-cCCCCCCCCeeEEE
Q 025256           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~i~~lsk~y~~~~~~i~~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~-~~~~~~~~~~g~~i  155 (255)
                      .++++++++  .+..    +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|++ ++++     .+. +
T Consensus        38 ~i~~~~~~~--~g~p----vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~-----i~~-v  102 (281)
T d1r0wa_          38 NVSFSHLCL--VGNP----VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR-----VSF-C  102 (281)
T ss_dssp             --CHHHHHH--TTCE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSC-----EEE-E
T ss_pred             cEEEEEcCC--CCCe----EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCE-----EEE-E
Confidence            345555553  3322    7799999999999999999999999999999999998   899983 5442     333 5


Q ss_pred             ecCCCCCcCccCCcccChHHHHHhcCCCCCCcHHHHHHHHHhhcCC---------C----CCCCCCCCccccchhhhhhh
Q 025256          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~qrv~~a~~  222 (255)
                      +++.....   .++.+++       -+....+......+++...+.         .    ......|||||+||+++|||
T Consensus       103 ~Q~~~l~~---~tv~eni-------~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARa  172 (281)
T d1r0wa_         103 SQFSWIMP---GTIKENI-------IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA  172 (281)
T ss_dssp             CSSCCCCS---EEHHHHH-------TTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHH
T ss_pred             eccccccC---ceeeccc-------cccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHH
Confidence            66554322   1333332       222233444444555443321         1    12344799999999999999


Q ss_pred             hccCCcEEEEeCCCCCCChHHHHHHHHH
Q 025256          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       223 l~~~~~ililDEp~~~LD~~~~~~l~~l  250 (255)
                      |+.+|+||||||||++||+...+++++.
T Consensus       173 L~~~p~illLDEPts~LD~~~~~~i~~~  200 (281)
T d1r0wa_         173 VYKDADLYLLDSPFGYLDVFTEEQVFES  200 (281)
T ss_dssp             HHSCCSEEEEESCCCSSCHHHHHHHHHH
T ss_pred             HHhCccchhhcCccccCCHHHHHHHHHH
Confidence            9999999999999999999998888764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=5.1e-14  Score=121.53  Aligned_cols=121  Identities=23%  Similarity=0.378  Sum_probs=91.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCCCCCC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~~~~~  186 (255)
                      .-+|||.|++|||||||.+.|..++.+ |+           ......++++|||+.+...+..    .....++|.|+++
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~-~~-----------~~~~v~~Is~D~F~~~~~~l~~----~~~~~~~g~Pes~  143 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSR-WP-----------EHRRVELITTDGFLHPNQVLKE----RGLMKKKGFPESY  143 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTT-ST-----------TCCCEEEEEGGGGBCCHHHHHH----HTCTTCTTSGGGB
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhh-hc-----------CCCceEEEeeeeeECCchHHHH----hcCCccCCchHhh
Confidence            469999999999999999999999841 00           1223445899999865322111    1112356788999


Q ss_pred             cHHHHHHHHHhhcCC-CCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCChHH
Q 025256          187 NPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (255)
Q Consensus       187 ~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~~~  243 (255)
                      +...+.+.+..+.-+ ..+..|.||+-...++.-.......|+|||+||.+.+.|+..
T Consensus       144 D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~  201 (308)
T d1sq5a_         144 DMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMD  201 (308)
T ss_dssp             CHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGG
T ss_pred             hHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccc
Confidence            999999999998876 457899999988888876677788899999999999988764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.29  E-value=1.6e-14  Score=114.00  Aligned_cols=44  Identities=11%  Similarity=-0.157  Sum_probs=34.2

Q ss_pred             CCccccchhhhhhhhccCCcEEEEeCCCCC--CChHHHHHHHHHHH
Q 025256          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLF--LDGGVWKDVSSMFD  252 (255)
Q Consensus       209 lS~G~~qrv~~a~~l~~~~~ililDEp~~~--LD~~~~~~l~~ll~  252 (255)
                      +++|++++.++++++..+|+++++|||...  .+...+..+.+++.
T Consensus        82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~  127 (178)
T d1ye8a1          82 ELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc
Confidence            678999999999999999999999997544  34455556665553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.8e-11  Score=104.12  Aligned_cols=124  Identities=22%  Similarity=0.337  Sum_probs=83.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccC---hHHHHHhcCCC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMED---PKEAHARRGAP  183 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~---~~~~~~~~g~~  183 (255)
                      .-+|||.|+.|||||||.+.|.-.+.+.   .|        ......++++|+||....+...+..   .......+|.|
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~---~~--------~~~~v~~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~P   95 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEK---YG--------GEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLP   95 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHH---HG--------GGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHH---hC--------CCcceEeeccCCCCCCHHHHHHHhhhccccccceecCCC
Confidence            4599999999999999999886665210   00        0112344899999864321100000   01122246889


Q ss_pred             CCCcHHHHHHHHHhhcCCC------CCCCCCCCc----cccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          184 WTFNPLLLLNCLKNLRNQG------SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~------~~~~~~lS~----G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      .+++...+.++++.|.-+.      .+.+|.|+.    |...|+.....+..+++|||+||.+.|..+
T Consensus        96 gThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p  163 (286)
T d1odfa_          96 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP  163 (286)
T ss_dssp             TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred             cchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccc
Confidence            9999999999999987653      467888884    667787665556678899999999888765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.1e-10  Score=91.84  Aligned_cols=122  Identities=21%  Similarity=0.345  Sum_probs=74.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHh--cCCCC
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGAPW  184 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~--~g~~~  184 (255)
                      .-+|||.|++|||||||.+.|+-.+.....+.         ......++.+|+|+...   ............  +..+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~---------~~~~~~vi~~D~yy~~~---~~~~~~~~~~~~~~~~~~~   69 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDY---------RQKQVVILSQDSFYRVL---TSEQKAKALKGQFNFDHPD   69 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCG---------GGCSEEEEEGGGGBCCC---CHHHHHHHHTTCSCTTSGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhcccc---------CCCceEEEecccccccc---chhhhhhhhhcccccCCcH
Confidence            35899999999999999999998874110000         11223458999986321   111100110001  11244


Q ss_pred             CCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhhhhhccCCcEEEEeCCCCCCCh
Q 025256          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a~~l~~~~~ililDEp~~~LD~  241 (255)
                      ..+...+.+.+..+..+.....|.|+.-...+..... ....++++|+||+++..+.
T Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~~  125 (213)
T d1uj2a_          70 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ  125 (213)
T ss_dssp             GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH
T ss_pred             HHHHHHHHhhhhhhhcCCcccccccccccccccCceE-EecccceEEecchhhhccH
Confidence            5566666677777776766666766665555544332 2357899999999999885

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.80  E-value=7.6e-10  Score=93.87  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCcc-CCcccChHHHH---HhcCC--
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAH---ARRGA--  182 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~-l~~~e~~~~~~---~~~g~--  182 (255)
                      +|||.|++||||||+.+.|..++.+              ..-...++.+|+|+.+... +.. +......   ..+.+  
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~~--------------~~v~~~iI~~Dsfyr~~R~~~~~-~~~~~~~~~~~~~~~~~   70 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKA-ELDRRYAAGDATFSHFS   70 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHH-HHHHHHHHTCTTCSTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhh--------------cCCCeEEEeCCCCCccchhhhhh-hhhhhhhhhccCCCCCC
Confidence            8999999999999999999988841              1112345899999754210 000 0000011   11222  


Q ss_pred             CCCCcHHHHHHHHHhhcCCCCCCCCCCCccccchhhhh---------hhhccCCcEEEEeCCCCCC
Q 025256          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDD---------ILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~~a---------~~l~~~~~ililDEp~~~L  239 (255)
                      |++++.+.+.+.++.++.+.....|.|++....+....         ..+..+.++||+||.+.+.
T Consensus        71 P~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~  136 (288)
T d1a7ja_          71 YEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAV  136 (288)
T ss_dssp             GGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTC
T ss_pred             cccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhcc
Confidence            66778888899999999999999999988766654321         1234577999999999987

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.15  E-value=3.9e-07  Score=71.27  Aligned_cols=27  Identities=26%  Similarity=0.533  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..-+|||.||+|||||||++.|.-.+.
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            345799999999999999999998874

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=1.9e-05  Score=63.45  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=26.7

Q ss_pred             cceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       100 vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++.-.+..+++++||+|+||||.+-.|+-.+.
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~~   36 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV   36 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345556788999999999999998877877664

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=2.5e-06  Score=64.89  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.93  E-value=5.1e-05  Score=60.61  Aligned_cols=58  Identities=21%  Similarity=0.147  Sum_probs=39.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCccccCCCCCCCCeeEEEecCCCCCcCccCCcccChHHHHHhcCC
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~~~~~~~~~~~~g~~i~~d~~~~~~~~l~~~e~~~~~~~~~g~  182 (255)
                      ++.+++++||+|+||||.+-.|+..+.    .          ......++..|.|..     -..+.++......++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~----~----------~g~kV~lit~Dt~R~-----gA~eQL~~~a~~l~i   62 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ----N----------LGKKVMFCAGDTFRA-----AGGTQLSEWGKRLSI   62 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH----T----------TTCCEEEECCCCSST-----THHHHHHHHHHHHTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH----H----------CCCcEEEEEeccccc-----cchhhHhhcccccCc
Confidence            578999999999999999888888774    1          222333578887643     334444445555554

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=3.5e-06  Score=64.24  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+.++.|+||+||||||+++.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5689999999999999999999999884

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.91  E-value=3.6e-06  Score=64.30  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+|.+|.|+|++||||||+.+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5799999999999999999999998873

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.89  E-value=3.8e-05  Score=61.54  Aligned_cols=28  Identities=25%  Similarity=0.393  Sum_probs=20.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +...+++++||+|+||||++-.|+..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~   37 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK   37 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999888887774

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.85  E-value=3.9e-06  Score=64.16  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+++.|.||+||||||+++.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998776

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=4.1e-06  Score=65.28  Aligned_cols=25  Identities=40%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.++.|+||||||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999998776

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.82  E-value=7.6e-05  Score=59.54  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.++.++||+|+||||++-.|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999988888774

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=5.6e-06  Score=67.64  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.4

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++++++- .+.++.|.|||.+||||+||.++-..
T Consensus        33 Ndi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          33 NPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeEEECC-CceEEEEeccCchhhHHHHHHHHHHH
Confidence            6666553 35789999999999999999987654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.6e-05  Score=60.50  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=25.9

Q ss_pred             ceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++-+...+++++||+|+||||.+-.|+-.+.
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~   34 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE   34 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34445567999999999999999888887774

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.77  E-value=6.9e-06  Score=62.83  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++++|+|++|||||||++.|...++
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999988874

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.77  E-value=9.5e-06  Score=65.81  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=24.4

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|+.++   ++++.|.|||.+||||+||.++-..
T Consensus        29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          29 NDLEMA---HELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEES---SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEeC---CcEEEEECCCccccchhhhhhHHHH
Confidence            455543   3588999999999999999877654

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5e-07  Score=70.34  Aligned_cols=35  Identities=31%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.+.++++.+| ++.|+|||||||||++..|.-.+.
T Consensus        15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            35566677655 889999999999999999987763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.75  E-value=8.4e-06  Score=62.01  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++|.|.|++||||||+++.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999983

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.74  E-value=8.4e-06  Score=62.31  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+.|+|.||+|||||||++.|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36799999999999999999999874

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=7.5e-06  Score=62.53  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=22.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3588999999999999999999985

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.67  E-value=1.2e-05  Score=60.78  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++.|.||+||||||+++.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999998873

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.66  E-value=1.2e-05  Score=59.95  Aligned_cols=24  Identities=42%  Similarity=0.580  Sum_probs=20.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|.|.||+|||||||++.|....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578899999999999999876543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.9e-06  Score=63.18  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+|.|+|++||||||+.+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998874

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.65  E-value=1.4e-05  Score=61.11  Aligned_cols=26  Identities=23%  Similarity=0.483  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++|+|.|++||||||+++.|+-.+.
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999998874

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.64  E-value=1.5e-05  Score=60.61  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|-.|.|+||+||||||+++.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999999876

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=1.3e-05  Score=59.90  Aligned_cols=25  Identities=40%  Similarity=0.680  Sum_probs=22.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|.|+||+||||||+.+.|+-.+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3577889999999999999999884

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.57  E-value=2.5e-05  Score=67.69  Aligned_cols=46  Identities=11%  Similarity=0.026  Sum_probs=38.7

Q ss_pred             CCCccccchhhhhhhh----ccCCcEEEEeCCCCCCChHHHHHHHHHHHh
Q 025256          208 SFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       208 ~lS~G~~qrv~~a~~l----~~~~~ililDEp~~~LD~~~~~~l~~ll~~  253 (255)
                      .+||||+.++++|..+    ..+++++|+|||+++||+..+..+.++|.+
T Consensus       332 ~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~  381 (427)
T d1w1wa_         332 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR  381 (427)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             hhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            4699999987765432    567789999999999999999999999864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=2e-05  Score=62.93  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.++.|+||||+|||||++.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999988765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.55  E-value=1.8e-05  Score=59.94  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+||+||||||+++.|+-.+.
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999998773

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.50  E-value=2.7e-05  Score=60.78  Aligned_cols=27  Identities=37%  Similarity=0.603  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+..+|.|+||+||||||+++.|+-.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            346799999999999999999999866

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.49  E-value=5.6e-05  Score=60.57  Aligned_cols=23  Identities=43%  Similarity=0.666  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|+|+.|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999998766

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=4e-05  Score=59.93  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++-.++.|+||.||||||+++.|+..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999998773

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.41  E-value=3.6e-05  Score=64.22  Aligned_cols=49  Identities=14%  Similarity=0.011  Sum_probs=39.6

Q ss_pred             CCCCCccccchhhhhhh----hccCCcEEEEeCCCCCCChHHHHHHHHHHHhh
Q 025256          206 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~~qrv~~a~~----l~~~~~ililDEp~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..+|.|+++...++..    ....+.++++|||-+.|+|...+.+.++|.+.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~  269 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN  269 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHh
Confidence            34678999988755443    45678999999999999999999999998753

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.39  E-value=3e-05  Score=60.68  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=25.9

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.++.++.|+||+||||||+++.|+-.+.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45788999999999999999999998764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.37  E-value=4.9e-05  Score=58.26  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +++.|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999883

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.33  E-value=5.8e-05  Score=57.41  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|+|++||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999984

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.31  E-value=6.3e-05  Score=61.24  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=25.9

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+....+.|.||+|||||||++.|++.+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            345567799999999999999999999883

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.30  E-value=7.1e-05  Score=58.16  Aligned_cols=26  Identities=38%  Similarity=0.566  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|-.+.|+||.||||||+.+.|+-.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            56678899999999999999999665

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=4.3e-05  Score=61.74  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|+..+++|+||+|||||++.|.+...
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence            589999999999999999999987653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=6.1e-05  Score=58.68  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6899999999999999998775

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.0014  Score=53.26  Aligned_cols=26  Identities=38%  Similarity=0.560  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|+++.|.|+.|+|||||+-.|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            59999999999999999998888765

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=7.9e-05  Score=57.51  Aligned_cols=28  Identities=36%  Similarity=0.395  Sum_probs=23.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -++.+++.++|++||||||+++.++-..
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            4567899999999999999999775443

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=8.4e-05  Score=57.70  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+.|+||+|+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988765

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=9.1e-05  Score=57.59  Aligned_cols=25  Identities=40%  Similarity=0.604  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+|.|+||.||||||.++.|+-.+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999998763

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=9.2e-05  Score=58.39  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=22.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|+|.||+||||||+.+.|+-.+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999999884

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.22  E-value=8.9e-05  Score=56.66  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+|++||||||+.+.|+-.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            356899999999999999998884

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=7.6e-05  Score=58.40  Aligned_cols=22  Identities=50%  Similarity=0.735  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.|+||+|||||||++.|+-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998775

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.20  E-value=6.5e-05  Score=58.40  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+||.||||||+++.|+--+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477999999999999999998774

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.20  E-value=0.0001  Score=58.44  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|+|.||+||||||.++.|+--+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999885

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.18  E-value=6.3e-05  Score=58.64  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+|+|+.|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.17  E-value=0.00011  Score=55.95  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|+|++||||||+.+.|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45779999999999999999884

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.17  E-value=0.00012  Score=57.28  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+|.++|.+||||||+++.|+..+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999998774

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=0.00012  Score=56.01  Aligned_cols=24  Identities=42%  Similarity=0.551  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+||.||||||+++.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367999999999999999988874

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.15  E-value=9.3e-05  Score=57.50  Aligned_cols=23  Identities=43%  Similarity=0.624  Sum_probs=20.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .-++||.|+.||||||+++.|.-
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45899999999999999998854

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00012  Score=56.60  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+|+++.|.||+|+|||||+-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999999888765

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.09  E-value=0.00015  Score=55.80  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .|.|+||.||||||+++.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            477999999999999999998874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.08  E-value=9.5e-05  Score=57.56  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++-+|+|-|+.||||||+++.|+..+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998876

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.03  E-value=0.00022  Score=56.68  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=26.1

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-++|.+|-|.|.+||||||+.+.|.-.+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344789999999999999999999998655

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.03  E-value=0.00017  Score=53.58  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|.|+|++|+|||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            36799999999999999998764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00018  Score=53.26  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|++|+|||||++.|.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46799999999999999998853

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00023  Score=61.36  Aligned_cols=27  Identities=22%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHH
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++..+.+.+|+|||||||||++..|.=
T Consensus        21 ~f~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          21 GFGESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             ECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             eCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            344456899999999999999999964

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.01  E-value=0.0002  Score=54.95  Aligned_cols=24  Identities=46%  Similarity=0.739  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+||.||||||+.+.|+-.+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            468999999999999999998874

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00017  Score=54.08  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |-.|+|+|+.++|||||++.|.|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=0.00015  Score=55.08  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+|+|+.|+|||||++.|.|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.00017  Score=55.32  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|+||.||||||.++.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999998776

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.00023  Score=56.56  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++|.+|+|-|+-||||||+++.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999999999998774

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.97  E-value=5.1e-05  Score=61.53  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|....++|+||+|||||++.|.+...
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            578889999999999999999988653

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00024  Score=56.05  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+|+|-|+-||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999998763

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.95  E-value=0.00021  Score=53.27  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|.+|+|||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38899999999999999998754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.94  E-value=0.00023  Score=55.50  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+|+|++|+|||||++.|.+..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.94  E-value=0.00022  Score=55.58  Aligned_cols=24  Identities=25%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.+.|+||.||||||+.+.|+-.+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            357799999999999999999876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.93  E-value=0.0002  Score=54.82  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +|+|+|..|+|||||++.|.|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999886

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.92  E-value=0.00014  Score=55.64  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -|+|+|++|+|||||++.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998853

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00021  Score=54.43  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +|+|+|.+++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00025  Score=54.51  Aligned_cols=24  Identities=46%  Similarity=0.725  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.|+||.||||||+++.|+-.+.
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            356889999999999999998873

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.90  E-value=9.3e-05  Score=57.07  Aligned_cols=22  Identities=50%  Similarity=0.622  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |||+|+.++|||||++.|.|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEEC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999987653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.87  E-value=0.00025  Score=55.90  Aligned_cols=21  Identities=48%  Similarity=0.675  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q 025256          108 HIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~  128 (255)
                      -++||+|+.||||||+++++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999775

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.87  E-value=0.0003  Score=54.00  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+=.|||+|..|+|||||++.|.|.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            3446899999999999999999875

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.81  E-value=0.00016  Score=57.80  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++++|+|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999999877

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.79  E-value=0.00019  Score=54.44  Aligned_cols=24  Identities=25%  Similarity=0.184  Sum_probs=20.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.++|+|++|+|||||++.|.+-.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999987653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.76  E-value=0.00034  Score=59.47  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=25.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -.+.-+|||.||+|||||||+..|...+.
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            34578899999999999999999998873

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00016  Score=55.50  Aligned_cols=22  Identities=55%  Similarity=0.761  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |||+|..++|||||++.|.|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.74  E-value=0.00047  Score=55.44  Aligned_cols=26  Identities=38%  Similarity=0.546  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...+.|.||+|+||||+++.|+..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34688999999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00042  Score=54.69  Aligned_cols=22  Identities=45%  Similarity=0.587  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHH
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      -+|||+|..||||||.++++..
T Consensus         4 ~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCcCCHHHHHHHHHH
Confidence            3899999999999999998864

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.73  E-value=0.00042  Score=55.22  Aligned_cols=23  Identities=43%  Similarity=0.749  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47799999999999999999876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.00049  Score=54.68  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|.+|+|-|+-||||||+++.|+-.++
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999998873

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.68  E-value=0.00031  Score=52.89  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|+.|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999987753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.68  E-value=0.00047  Score=55.20  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+.+.||.|+||||+++++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999884

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.68  E-value=0.00047  Score=55.11  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -+.+.||+|+||||++++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            477999999999999999999884

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.65  E-value=0.00052  Score=53.66  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -|+|+|+.|+|||||++.|.+-.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.0052  Score=51.48  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.-.+.++||+|+|||.|++.|+-.+.
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc
Confidence            344788999999999999999999983

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.61  E-value=0.00054  Score=57.56  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.-+.+.||+|+|||.|+|.|+..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            345667899999999999999999984

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0004  Score=55.07  Aligned_cols=27  Identities=30%  Similarity=0.311  Sum_probs=23.9

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +++|+++.|.||+|||||||+-.++-.
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            789999999999999999998777643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.57  E-value=0.00061  Score=51.27  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|++|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3679999999999999988764

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.00062  Score=54.09  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7799999999999999999876

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00079  Score=53.62  Aligned_cols=28  Identities=18%  Similarity=0.201  Sum_probs=25.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+|.++.|.||+|+|||||+-.++...
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999998887644

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.54  E-value=0.001  Score=56.31  Aligned_cols=28  Identities=32%  Similarity=0.440  Sum_probs=24.4

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -...-++||.||.|||||||+..|...+
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.53  E-value=0.00065  Score=51.34  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-.++|+|.+|||||||++.|.+..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568899999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.50  E-value=0.00081  Score=52.38  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +|+|-|.-||||||+++.|...++
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~   25 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999998773

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.50  E-value=0.00093  Score=50.67  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=27.1

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..++|.+++|-|+=|||||||.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            457899999999999999999999998874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.49  E-value=0.00049  Score=58.38  Aligned_cols=30  Identities=23%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++.+.-+.|.|+.|||||||++.|.+.+.
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            345566789999999999999999999883

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.48  E-value=0.0002  Score=53.50  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|+|+|..++|||||++.|.|.-
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999974

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.001  Score=54.49  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +....-+.|.||+|+|||++++.|+..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            33445688999999999999999999884

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00088  Score=50.73  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.41  E-value=0.00079  Score=53.75  Aligned_cols=28  Identities=25%  Similarity=0.424  Sum_probs=24.1

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|.++.|.||+|||||||+-.++-..
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999987665443

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.40  E-value=0.0017  Score=53.42  Aligned_cols=29  Identities=31%  Similarity=0.511  Sum_probs=26.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.|.++-|.||+|||||||+-.++...+
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            67899999999999999999999888875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.38  E-value=0.00092  Score=54.31  Aligned_cols=27  Identities=41%  Similarity=0.553  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..-+.|.||.|+|||++++.|+....
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcCCCCHHHHHHHHhhccc
Confidence            334578999999999999999999874

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.38  E-value=0.00093  Score=50.51  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++++|+.|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988764

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.37  E-value=0.0009  Score=53.72  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.++.|.||.|+|||||++.++..+
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999888766

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.001  Score=50.58  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.00091  Score=50.34  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.33  E-value=0.0009  Score=54.64  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             cccccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        96 ~l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+++..-+.+|+++.|.|++|+|||||+..|+-.
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            44555545889999999999999999998888754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.33  E-value=0.00094  Score=52.73  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=25.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+|+++.|.|++|+|||||+--++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999998887665

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.31  E-value=0.0011  Score=52.51  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|.||+|+||||++++++..+.
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHh
Confidence            67899999999999999998773

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.00041  Score=52.70  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .-.|+|+|+.++|||||++.|.+.-
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4569999999999999999997753

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.30  E-value=0.00096  Score=53.13  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=25.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +++|.++.|.|++|+|||||+..++-..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998877765

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.30  E-value=0.00075  Score=55.14  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|.+|+|||||++.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999999965

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.30  E-value=0.0011  Score=49.74  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999987753

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.28  E-value=0.00098  Score=52.34  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHH
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +++|+++.|.|++|+|||||+--++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999986544

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.27  E-value=0.00086  Score=51.42  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |||+|...||||||++.|.+.-
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999998743

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.22  E-value=0.0014  Score=53.77  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +....-+.|.||+|+|||+|++.|++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            44555688999999999999999999874

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.22  E-value=0.0016  Score=52.10  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...+.|.||.|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            45788999999999999999999884

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.18  E-value=0.0014  Score=53.26  Aligned_cols=25  Identities=44%  Similarity=0.626  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .-+.|.||.|+|||+|++.|+..+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcC
Confidence            3478999999999999999999874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0014  Score=49.61  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|++|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            3789999999999999987754

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0013  Score=49.35  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35889999999999999998753

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0014  Score=49.22  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++++|.+|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.12  E-value=0.0026  Score=54.57  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=27.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .++++.++.+.||.|+||||+++.|+..+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            567888999999999999999999999994

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=49.31  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|.+|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999987763

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.06  E-value=0.0017  Score=51.27  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.|.||.|+||||++++|+..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999999876

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0018  Score=48.67  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.06  E-value=0.0018  Score=51.69  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+|||.|+-||||||+++.|...+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            479999999999999999996543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.05  E-value=0.0022  Score=52.18  Aligned_cols=25  Identities=36%  Similarity=0.590  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .-+.|.||+|+|||+|++.++....
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceeEEecCCCCCchHHHHHHHHHhC
Confidence            3478999999999999999999774

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0018  Score=49.44  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|..|+|||||++.+.+-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.02  E-value=0.0014  Score=49.47  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999988653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0016  Score=49.11  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998864

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0023  Score=48.39  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|++|+|||||++.+..-
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999887763

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0017  Score=49.60  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025256          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0015  Score=49.15  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999998765

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0019  Score=48.20  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|..|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.002  Score=48.46  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+..-
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.002  Score=48.38  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|.+|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0019  Score=48.33  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999998764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.95  E-value=0.0021  Score=51.17  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|||+|...+|||||++.|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            59999999999999999998864

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0027  Score=48.70  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=24.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .+.|+|.+|+|||||++.+. .....-|+-|-
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCCCCCCeeee
Confidence            47899999999999999994 44344577773

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0018  Score=48.77  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999987754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0023  Score=48.06  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.0019  Score=51.64  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.|.||+|+||||+++.++-.+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999876

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.89  E-value=0.0015  Score=52.55  Aligned_cols=24  Identities=46%  Similarity=0.653  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++.|.||.|+||||+++.++..+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            456679999999999999998873

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.89  E-value=0.002  Score=49.81  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988764

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0023  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999998864

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.0022  Score=56.58  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .=+.++||+|+|||-|+|.|++.+.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            3688999999999999999999885

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0022  Score=48.63  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+.|+|.+|+|||||++.+..-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887764

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.83  E-value=0.003  Score=48.68  Aligned_cols=31  Identities=29%  Similarity=0.321  Sum_probs=23.7

Q ss_pred             ccccceecCCCeEEEEECCCCCcHHHHHHHHH
Q 025256           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        97 l~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      ++..-+.+ .|.-+.|.|++|+|||||+-.|.
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence            34445555 58889999999999999986543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0023  Score=48.37  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|..|+|||||++.+.+-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999988754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0026  Score=47.85  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999988864

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0018  Score=56.23  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -|+|+|.+|+|||||++.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999954

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0028  Score=47.59  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.74  E-value=0.0033  Score=48.32  Aligned_cols=30  Identities=30%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHH
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +..-+.+ .|.-+.|.|++|+|||||+-.|.
T Consensus         6 H~~~v~~-~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           6 HGVLVDI-YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            3333444 47889999999999999976544

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0026  Score=48.12  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+|+|..|+|||||++.+..-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999987753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.72  E-value=0.0015  Score=49.72  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=20.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      +--.++|+|++|+|||||++.+.+-
T Consensus        16 k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          16 KELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3345789999999999999987543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.003  Score=47.51  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988754

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.70  E-value=0.0029  Score=52.51  Aligned_cols=34  Identities=29%  Similarity=0.388  Sum_probs=29.4

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -|.=+.|-+|+..+|+|++|+|||||+..|+...
T Consensus        34 ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          34 LDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            3444678899999999999999999999998865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.66  E-value=0.0038  Score=54.14  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.-++.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            4567899999999999999999998873

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.66  E-value=0.0032  Score=48.03  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+..-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999987763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0024  Score=48.29  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999988754

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0034  Score=47.29  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+.|+|..|+|||||++.+.+-
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999988763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.58  E-value=0.0036  Score=47.06  Aligned_cols=22  Identities=32%  Similarity=0.397  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999987653

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0036  Score=49.71  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++|+|=|+-||||||+++.|+-.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            3689999999999999999999887

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.0042  Score=46.48  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .++|+|..|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999987754

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.44  E-value=0.0044  Score=50.89  Aligned_cols=30  Identities=23%  Similarity=0.449  Sum_probs=25.8

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -++.|.++-|.||+|+|||||+-.++...+
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence            478899999999999999999877776653

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.44  E-value=0.0045  Score=50.67  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=26.5

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      =++.|.++-|.||+|+|||||+-.++...+
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            367899999999999999999988888775

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.43  E-value=0.0038  Score=49.37  Aligned_cols=30  Identities=20%  Similarity=0.134  Sum_probs=22.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .+.|+|.+|+|||||++.+....  ..|+-|-
T Consensus         8 KilllG~~~vGKTsll~~~~~~~--~~pTiG~   37 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILH--VVLTSGI   37 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH--CCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC--cCCCCCe
Confidence            57899999999999999875432  1266664

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.40  E-value=0.0045  Score=46.54  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998765

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.0024  Score=48.31  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=8.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+|+|..|+|||||++.+.+-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEEECCCCC------------
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999877753

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.38  E-value=0.0024  Score=53.68  Aligned_cols=24  Identities=29%  Similarity=0.272  Sum_probs=22.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .=+.|.||.|+|||||+|.+++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred             CeEEEECCCCccHHHHHHHHHHhC
Confidence            347899999999999999999998

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.38  E-value=0.0046  Score=47.05  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++++|..|+|||||++.+.+-.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999887643

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0045  Score=47.33  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.0021  Score=48.54  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .++|+|+.|+|||||++.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.29  E-value=0.0037  Score=47.14  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      .+.|+|++|+|||||++.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.0029  Score=52.20  Aligned_cols=26  Identities=23%  Similarity=0.275  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +--+|+|+||-++||||||+.|.|..
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            45689999999999999999998854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.22  E-value=0.0057  Score=46.66  Aligned_cols=30  Identities=30%  Similarity=0.352  Sum_probs=22.0

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHH
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +..-+.+ .|.-|.|.|++|+|||||+-.|.
T Consensus         7 H~~~v~~-~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           7 HGVLVDV-YGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             ESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence            4433444 47889999999999999875443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.16  E-value=0.0078  Score=45.53  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=23.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCcc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G~  140 (255)
                      .+.|+|..|+|||||++.+....-   |+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence            378999999999999998865543   66664

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0052  Score=47.12  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .|+|+|..|+|||||++.+..-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0056  Score=46.56  Aligned_cols=22  Identities=18%  Similarity=0.305  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      .+.|+|.+|+|||||++.+..-
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999877653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.0084  Score=45.53  Aligned_cols=31  Identities=23%  Similarity=0.160  Sum_probs=23.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~~~~p~~G  139 (255)
                      .+.|+|..|+|||||++.+..-.-...|+-|
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG   34 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG   34 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence            3689999999999999998766533345555

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.89  E-value=0.0088  Score=48.93  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      ...+++|.|.-|.|||||++.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            4679999999999999999988764

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0089  Score=46.77  Aligned_cols=25  Identities=24%  Similarity=0.396  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.+.||.|+||||+++.++..+.
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhcc
Confidence            4588999999999999999999873

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.0061  Score=48.39  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -++.|.|.=|||||||++.+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            47889999999999999887653

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.012  Score=46.92  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..+.|.||+|+||||+++.++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3467889999999999999998874

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.41  E-value=0.0095  Score=45.86  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999865

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.34  E-value=0.0079  Score=50.03  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |||+|..-+|||||++.|.|.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            8999999999999999998864

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.25  E-value=0.014  Score=48.18  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +-.+||+|..-+|||||++.|++--
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCC
Confidence            3459999999999999999999863

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.13  E-value=0.01  Score=49.02  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .++++|.-+||||||++.|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999964

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.99  E-value=0.015  Score=47.42  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+||+|-.-+|||||++.|++.-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.95  E-value=0.011  Score=48.60  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++++|.-+||||||++.|.|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6799999999999999999964

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.94  E-value=0.02  Score=47.85  Aligned_cols=26  Identities=27%  Similarity=0.404  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.-.+.++||+|+|||.+++.|+-.+
T Consensus        52 p~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          52 PIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             CSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCcchHHHHHHHHHHHh
Confidence            34467899999999999999999987

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.93  E-value=0.018  Score=44.92  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++|+|.-++|||||+..|....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            8999999999999999996543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.93  E-value=0.013  Score=48.11  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=28.1

Q ss_pred             ccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        99 ~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      |.-+.+-+|+.++|+|+.|+|||||+..++...
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            444678899999999999999999988887664

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.87  E-value=0.018  Score=48.28  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      -++.+.||+|+|||.|.+.|++.+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            3566789999999999999999973

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.72  E-value=0.019  Score=49.02  Aligned_cols=28  Identities=25%  Similarity=0.611  Sum_probs=22.8

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.++- +.++||+|+|||-|+|.|+.++.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence            34443 66889999999999999998873

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.53  E-value=0.022  Score=46.43  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -++|+|..|+|||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999998544

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.029  Score=43.57  Aligned_cols=27  Identities=33%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ...-+.|+||+|.|||++..-|+..+.
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHH
Confidence            344678999999999999999998773

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.17  E-value=0.022  Score=46.66  Aligned_cols=23  Identities=26%  Similarity=0.385  Sum_probs=19.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~g  129 (255)
                      -+-++|+|..|||||||+..|.-
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHH
Confidence            34689999999999999998853

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.12  E-value=0.028  Score=45.80  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ..-+.|+||+|+|||+++.-++..+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            45678999999999999999998764

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=93.10  E-value=0.021  Score=49.01  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=17.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -+.|+|++|||||++++.|.-.
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcHHHHHHHHHHH
Confidence            4789999999999999755433

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.96  E-value=0.027  Score=44.14  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|.||+|+|||-|++.++-...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999998774

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.89  E-value=0.024  Score=43.94  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -++|+|.-.+|||||+..|.|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998865

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.049  Score=44.23  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=23.5

Q ss_pred             eecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +.+.++ +.+|+|||||||||+|.+|.-++
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            344443 88999999999999999997655

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.74  E-value=0.036  Score=42.86  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +||+|.-.+|||||++.|.+.+
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999999998865

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.60  E-value=0.025  Score=47.55  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|.|-|+=|+||||+++.|+..+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            48899999999999999998665

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.52  E-value=0.05  Score=42.37  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=26.9

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+++.-++.|.||.++|||+++..|+..+.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            367778999999999999999999999984

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.051  Score=38.73  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=24.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      ++|-.+.+.|-+||||||+.+.|.--+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5788999999999999999999976663

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.40  E-value=0.037  Score=46.51  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .|.|-|+=|+||||+++.|+..+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            578899999999999999998874

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=92.06  E-value=0.026  Score=46.23  Aligned_cols=34  Identities=15%  Similarity=0.118  Sum_probs=27.7

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -|.=+.+-+|+.++|+|++|+|||+|+..+....
T Consensus        58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             EeccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            3444678899999999999999999998765443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.97  E-value=0.042  Score=44.44  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=17.1

Q ss_pred             EEEEECCCCCcHHHH-HHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTL-AAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTL-lk~L~gll  131 (255)
                      -+.|.|+.||||||+ +..++.++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHH
Confidence            367899999999975 45555554

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.76  E-value=0.043  Score=45.58  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.7

Q ss_pred             CCCeEEEEECCCCCcHHHHH
Q 025256          105 NVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLl  124 (255)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            46899999999999999974

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.066  Score=45.33  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=18.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHH
Q 025256          107 KHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       107 Geiv~LiGpNGsGKSTLlk~L~  128 (255)
                      +.++.|.||.|+||||++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            6799999999999999875543

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.40  E-value=0.044  Score=45.61  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCeEEEEECCCCCcHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLl  124 (255)
                      .|++..+.|.||+|||||.
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            5889999999999999973

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.38  E-value=0.081  Score=40.80  Aligned_cols=27  Identities=7%  Similarity=-0.006  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      .+.-+.+.||+|+||||+++.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            466788999999999999999998774

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.34  E-value=0.038  Score=46.39  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .|.|=|+=||||||+++.|+-.+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999887

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.28  E-value=0.039  Score=45.11  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=16.4

Q ss_pred             EEEEECCCCCcHHHHH-HHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLA-AEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLl-k~L~gll  131 (255)
                      .+.|.|+.||||||.| ..++-++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            3668899999999754 4455554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.27  E-value=0.036  Score=45.58  Aligned_cols=33  Identities=12%  Similarity=0.143  Sum_probs=26.8

Q ss_pred             cccceecCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~vsl~i~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -|.-+.+-+|+.++|+|+.|+|||||+..+...
T Consensus        59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             EecccCccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            344568889999999999999999998755543

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.10  E-value=0.081  Score=42.86  Aligned_cols=29  Identities=21%  Similarity=0.477  Sum_probs=25.6

Q ss_pred             ecCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ...+--++.|.||.++|||||+..|..++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34556788999999999999999999998

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.75  E-value=0.062  Score=44.74  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.8

Q ss_pred             CCCeEEEEECCCCCcHHHHH
Q 025256          105 NVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLl  124 (255)
                      +.|++..+.|-||+|||||.
T Consensus        12 ~~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36888899999999999996

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.59  E-value=0.029  Score=39.58  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=18.2

Q ss_pred             cCCCeEEEEECCCCCcHHHHH
Q 025256          104 VNVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLl  124 (255)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            567999999999999999554

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.26  E-value=0.072  Score=41.74  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025256          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++++|.-++|||||+..|..
T Consensus         6 i~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHH
Confidence            89999999999999988854

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.95  E-value=0.11  Score=47.91  Aligned_cols=27  Identities=22%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.+.|.|.|.||||||+-.|.|...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            568999999999999999999998766

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=89.88  E-value=0.11  Score=47.62  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.+.+.|.|.|.||||||+-.|.|...+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999887765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.75  E-value=0.11  Score=40.84  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025256          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ++++|.-.+|||||+..|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6899999999999999997654

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.37  E-value=0.13  Score=47.41  Aligned_cols=28  Identities=21%  Similarity=0.326  Sum_probs=24.5

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -++.+.|.|.|.||||||+-.|.|...+
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999999987776

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.85  E-value=0.11  Score=41.42  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      ...-|.|.|+.|+||+++++.|...-
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            34568899999999999999997654

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.70  E-value=0.085  Score=42.51  Aligned_cols=28  Identities=36%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             cCCCeEEEEECCCCCcHHH--HHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKST--Llk~L~gll  131 (255)
                      +.+|+.+.|.+|.|||||+  |..++...+
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999996  345555544

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=88.54  E-value=0.16  Score=36.81  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             CeEEEEECCCCCcHHH-HHHHHHHhh
Q 025256          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (255)
Q Consensus       107 Geiv~LiGpNGsGKST-Llk~L~gll  131 (255)
                      |.+..|+||=.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            7788999999999999 777765554

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=88.40  E-value=0.19  Score=38.09  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      |+++|+|.|-||  |||...+|..+++
T Consensus         1 p~kvI~VTGTnG--KTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSSG--KTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSSC--HHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCc--HHHHHHHHHHHHH
Confidence            568999999986  9999999999994

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.38  E-value=0.15  Score=47.53  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.+.+.|.|.|.||||||+-.|.|...+
T Consensus       120 ~~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         120 DRENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             HTCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3567899999999999999999888777

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=88.37  E-value=0.11  Score=44.49  Aligned_cols=23  Identities=35%  Similarity=0.606  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -+.|+|++|.|||+++.-|+..+
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999998888765

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.81  E-value=0.16  Score=47.29  Aligned_cols=27  Identities=22%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+.+.|.|.|.||||||.-.|.|...+
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457999999999999999988888876

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.70  E-value=0.13  Score=36.51  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=16.3

Q ss_pred             CCeEEEEECCCCCcHHHHHH
Q 025256          106 VKHIVGLAGPPGAGKSTLAA  125 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk  125 (255)
                      +-+...|.+|-|||||+++-
T Consensus         7 ~~~~~ll~apTGsGKT~~~~   26 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVP   26 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHH
Confidence            34667789999999999864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=87.41  E-value=0.21  Score=46.14  Aligned_cols=28  Identities=25%  Similarity=0.326  Sum_probs=24.9

Q ss_pred             cCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      -.+.+.|.|.|.||||||+-.|.+...+
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3568899999999999999999998876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.18  E-value=0.16  Score=40.28  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025256          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -++|+|.-++|||||+..|.-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3799999999999999888643

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=86.95  E-value=0.19  Score=40.49  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      .+-.++|+|-.-+|||||++.|.|.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            35569999999999999999999864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.88  E-value=0.13  Score=43.06  Aligned_cols=21  Identities=29%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025256          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 iv~LiGpNGsGKSTLlk~L~g  129 (255)
                      -|+|+|.-|+|||||+..|.-
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            499999999999999999853

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=85.84  E-value=0.14  Score=40.69  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025256          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 v~LiGpNGsGKSTLlk~L~g  129 (255)
                      ++|+|.-++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            89999999999999998844

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.60  E-value=0.33  Score=37.19  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHhhc
Q 025256          107 KHIVGLA-GPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 Geiv~Li-GpNGsGKSTLlk~L~gll~  132 (255)
                      |++|++. +.-|+||||+.--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            6789999 6678999999999999884

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=84.94  E-value=0.32  Score=36.70  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=22.0

Q ss_pred             eEEEEECCC-CCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPP-GAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpN-GsGKSTLlk~L~gll~  132 (255)
                      +.+-|.|-+ |+||||+.-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            467899997 9999999999999984

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.42  E-value=0.32  Score=34.80  Aligned_cols=26  Identities=38%  Similarity=0.368  Sum_probs=20.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025256          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Geiv~LiGpNGsGKSTLlk~L~gll  131 (255)
                      +|.+..|+||=.|||||-|=..+-..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            58899999999999999655544444

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.87  E-value=0.37  Score=38.08  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +.|+|.|.=|+||||+.-.|+..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            4688999999999999999999884

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=83.76  E-value=0.18  Score=38.25  Aligned_cols=20  Identities=40%  Similarity=0.333  Sum_probs=16.2

Q ss_pred             CCCeEEEEECCCCCcHHHHH
Q 025256          105 NVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLl  124 (255)
                      ..|+-+.|.+|.|||||+..
T Consensus        38 ~~~~~~il~apTGsGKT~~a   57 (202)
T d2p6ra3          38 FSGKNLLLAMPTAAGKTLLA   57 (202)
T ss_dssp             TTCSCEEEECSSHHHHHHHH
T ss_pred             HcCCCEEEEcCCCCchhHHH
Confidence            35666789999999999864

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.94  E-value=0.23  Score=38.75  Aligned_cols=26  Identities=19%  Similarity=0.271  Sum_probs=19.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHh
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gl  130 (255)
                      -+|+-+.|++|.|+|||+..-+.+-.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~~   81 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSLF   81 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHHHH
Confidence            36888889999999999876544433

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=80.79  E-value=0.53  Score=35.60  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025256          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~Geiv~LiGpNGsGKSTLlk~L~gll~  132 (255)
                      +..+++||.|-||  |||...+|..+++
T Consensus        12 ~~~~~iAITGTnG--KTTt~~~l~~iL~   37 (207)
T d1j6ua3          12 EKKEEFAVTGTDG--KTTTTAMVAHVLK   37 (207)
T ss_dssp             HCCCEEEEECSSS--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCC--HHHHHHHHHHHHH
Confidence            4578999999885  9999999999995

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.26  E-value=0.69  Score=35.20  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             eEEEEE-CCCCCcHHHHHHHHHHhhc
Q 025256          108 HIVGLA-GPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eiv~Li-GpNGsGKSTLlk~L~gll~  132 (255)
                      ++|+|+ |.-|+||||+.-.|+..+.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la   27 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALA   27 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHH
Confidence            467777 7888999999999999884