Citrus Sinensis ID: 025287

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM
Secondary Structure (PSIPRED)
ccccEEEEEEEEEcccHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEccccHHHHHHHHHHHHccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccccEccccccccccccccccccHcEcccccccccEcc
Coil and Loop (DISEMBL)
MGEKKVTTMVLKVDLQCSKCYKKVKKVlckfpqiqdqifdektntvrikvvccspekirdklcckgegsiksiailepekpkppppkpkepekpkapekpkepekpkqpekpkepekpkqpekpkepekpkepekpkepekpkepakpkepekpkeppkpsppppapapapapapapapvpchppvgvccrecyegrgggpcydlgygqtrhydgycgrpvyegwaggcdtrdyyrsrcsdyiceenptapctim
Flexible Loop (DISEMBL)
mgekkvttmvlkvdlqcsKCYKKVKKVLCKfpqiqdqifdektntvrikvvccspekirdklcckGEGSIksiailepekpkppppkpkepekpkapekpkepekpkqpekpkepekpkqpekpkepekpkepekpkepekpkepakpkepekpkepPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCsdyiceenptapctim
Low Complexity Region (SEG)
MGEKKVTTMVLKVDLQCSkcykkvkkvlckFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILepekpkppppkpkepekpkapekpkepekpkqpekpkepekpkqpekpkepekpkepekpkepekpkepakpkepekpkeppkpsppppapapapapapapapVPCHPPVGVccrecyegrgggpcyDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM
Disordered region (IsUnstruct)
******TTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAI************************************************************************************************************PPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICE**********
Disordered Region (DISOPRED)
******T*MVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKI********************************************************************************************************************************************************RHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM
Disordered Region (DISEMBL)
********MVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPEK************************************************************************************************PAPVPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM
Disordered Region (DISPRO)
**EKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPE***************************************************************************************************************************VPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTI*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGGCDTRDYYRSRCSDYICEENPTAPCTIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
P16053	858	Neurofilament medium poly	yes	no	0.317	0.094	0.609	2e-13
Q01443	827	Sporozoite surface protei	N/A	no	0.298	0.091	0.467	3e-12
Q8CQD9	1469	Accumulation-associated p	yes	no	0.345	0.059	0.561	1e-11
P21979	1528	Cell surface antigen I/II	N/A	no	0.447	0.074	0.376	1e-10
P27951	1164	IgA FC receptor OS=Strept	yes	no	0.345	0.075	0.511	2e-09
Q4U9M9	893	104 kDa microneme/rhoptry	yes	no	0.313	0.089	0.439	3e-08
Q9LBG3	1653	Probable cell-surface ant	N/A	no	0.411	0.063	0.356	8e-06
P06914	367	Circumsporozoite protein	N/A	no	0.270	0.188	0.357	0.0005

>sp|P16053|NFM_CHICK Neurofilament medium polypeptide OS=Gallus gallus GN=NEFM PE=2 SV=2

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 55/82 (67%), Gaps = 1/82 (1%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
           PEKP P P K   PEK ++PEKP  PEK   PEKP  PEKP+ PEKP  PEKP  PEKP+
Sbjct: 641 PEKP-PTPEKAITPEKVRSPEKPTTPEKVVSPEKPASPEKPRTPEKPASPEKPATPEKPR 699

Query: 138 EPEKPKEPAKPKEPEKPKEPPK 159
            PEKP  P KP+ PEKP  P K
Sbjct: 700 TPEKPATPEKPRSPEKPSSPLK 721

Neurofilaments usually contain three intermediate filament proteins: L, M, and H which are involved in the maintenance of neuronal caliber.
Gallus gallus (taxid: 9031)

>sp|Q01443|SSP2_PLAYO Sporozoite surface protein 2 OS=Plasmodium yoelii yoelii GN=SSP2 PE=1 SV=2

 Score = 72.4 bits (176), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 36/77 (46%), Positives = 40/77 (51%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
            P EP  P AP  P EP  P +P  P EP  P +P  P EP  PK+P  P EP  P EP 
Sbjct: 472 NPNEPSNPNAPSNPNEPSNPNEPSNPNEPSNPNEPSNPNEPSNPKKPSNPNEPSNPNEPL 531

Query: 147 KPKEPEKPKEPPKPSPP 163
            P EP  P EP  P+ P
Sbjct: 532 NPNEPSNPNEPSNPNEP 548

Plasmodium yoelii yoelii (taxid: 73239)

>sp|Q8CQD9|PLS_STAES Accumulation-associated protein OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_0175 PE=4 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 54/89 (60%)

Query: 75   ILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE 134
            I+E    K  P KP EP KP  P KP EP KP +P  P EP KP +P KP EP KP EP 
Sbjct: 1289 IVEYGPTKAEPGKPAEPGKPAEPGKPAEPGKPAEPGTPAEPGKPAEPGKPAEPGKPAEPG 1348

Query: 135  KPKEPEKPKEPAKPKEPEKPKEPPKPSPP 163
            KP EP KP EP  P EP KP EP KP+ P
Sbjct: 1349 KPAEPGKPAEPGTPAEPGKPAEPGKPAEP 1377

Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280)

>sp|P21979|SPAA_STRDO Cell surface antigen I/II OS=Streptococcus downei GN=spaA PE=3 SV=2

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 58/130 (44%), Gaps = 16/130 (12%)

Query: 68  GSIKSIAI--LEPEKPKPP--PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEK-PKQ-- 120
           G I+++ +  +  EKP PP  P KP EP      E    P +PK   +P  P K P Q  
Sbjct: 833 GKIRAVNVPKVTKEKPTPPVEPTKPDEPTYEVEKELVDLPVEPKYEPEPTPPSKNPDQSI 892

Query: 121 PEKPKEPE---------KPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
           PEKP EP           P EP   KEP  P+     +EPEKP EP   S P P   P  
Sbjct: 893 PEKPVEPTYEVEKELEPAPVEPSYEKEPTPPQSTPDQEEPEKPVEPSYQSLPTPPVEPVY 952

Query: 172 APAPAPAPVP 181
              P P  VP
Sbjct: 953 ETVPGPVSVP 962

Streptococcus downei (taxid: 1317)

>sp|P27951|BAG_STRAG IgA FC receptor OS=Streptococcus agalactiae GN=bag PE=1 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 78  PEKPKPP--PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
           PE P  P  P  P+ P+ P+AP+ P  PE PK PE P+ PE PK PE P  PE PK PE 
Sbjct: 827 PETPDTPKIPELPQAPDTPQAPDTPHVPESPKAPEAPRVPESPKTPEAPHVPESPKAPEA 886

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPP 165
           P+ PE PK P  P  PE PK P  P  P P
Sbjct: 887 PRVPESPKTPEAPHVPESPKTPEAPKIPEP 916

Streptococcus agalactiae (taxid: 1311)

>sp|Q4U9M9|104K_THEAN 104 kDa microneme/rhoptry antigen OS=Theileria annulata GN=TA08425 PE=3 SV=1

 Score = 59.3 bits (142), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 36/82 (43%), Positives = 47/82 (57%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
            KP   P   K PE PK  + PK PE PK P++P  P++P  P+ PK PE    P+ PK 
Sbjct: 563 HKPSKIPVYTKRPEFPKKSKSPKRPESPKSPKRPVSPQRPVSPKSPKRPESLDIPKSPKR 622

Query: 139 PEKPKEPAKPKEPEKPKEPPKP 160
           PE PK P +P  P++P  P +P
Sbjct: 623 PESPKSPKRPVSPQRPVSPRRP 644

Theileria annulata (taxid: 5874)

>sp|Q9LBG3|PAA_STRCG Probable cell-surface antigen I/II OS=Streptococcus criceti GN=paaA PE=3 SV=1

 Score = 51.2 bits (121), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/132 (35%), Positives = 50/132 (37%), Gaps = 27/132 (20%)

Query: 80   KPKPPPPKPKEPEKPKAPEKPKEP----EKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
            K  P  P   EP  P AP +P EP    EK  +P  P EP    +P  P       EP K
Sbjct: 941  KDIPNKPMESEPTPPVAPTQPLEPVYEVEKDLEP-VPVEPNYDPEPTPPTRTPDQPEPNK 999

Query: 136  PKEP----EKPKEPA-----------------KPKEPEKPKEPPKPSPPPPAPAPAPAPA 174
            P EP    EKP EPA                    EP KP EP      P  PAP   P 
Sbjct: 1000 PDEPNYEVEKPSEPAPIEPNYDPEPTPPTRTPDQPEPNKPDEPNYEVEQPQEPAPV-EPK 1058

Query: 175  PAPAPVPCHPPV 186
              P P P   PV
Sbjct: 1059 YDPEPTPPVDPV 1070

Streptococcus criceti (taxid: 1333)

>sp|P06914|CSP_PLAYO Circumsporozoite protein OS=Plasmodium yoelii yoelii PE=1 SV=1

 Score = 45.1 bits (105), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%)

Query: 85  PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKE 144
           P  P  P+ P AP+ P  P+ P  P+ P  P+ P  P+ P  P+ P  P+ P  P+ P  
Sbjct: 156 PQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGAPQGPGA 215

Query: 145 PAKPKEPEKP 154
           P  P  P+ P
Sbjct: 216 PQGPGAPQGP 225

The circumsporozoite protein is the immunodominant surface antigen on the sporozoite (the infective stage of the malaria parasite that is transmitted from the mosquito to the vertebrate host).

Plasmodium yoelii yoelii (taxid: 73239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
240255932	254	metal ion binding protein [Arabidopsis t	0.941	0.944	0.496	9e-36
194466241	232	putative metal ion-binding protein [Arac	0.854	0.939	0.493	3e-31
359496103	233	PREDICTED: uncharacterized protein LOC10	0.870	0.952	0.457	9e-28
359496105	233	PREDICTED: uncharacterized protein LOC10	0.870	0.952	0.457	2e-27
118486749	207	unknown [Populus trichocarpa]	0.788	0.971	0.406	4e-27
315659650	2202	serine-aspartate repeat-containing prote	0.423	0.049	0.522	6e-26
418636420	2190	putative serine-aspartate repeat protein	0.423	0.049	0.522	2e-25
297804556	244	hypothetical protein ARALYDRAFT_493247 [	0.298	0.311	0.776	8e-25
388494848	261	unknown [Medicago truncatula]	0.298	0.291	0.772	9e-25
357480619	261	Proline-rich protein [Medicago truncatul	0.298	0.291	0.772	9e-25

>gi|240255932|ref|NP_974559.5| metal ion binding protein [Arabidopsis thaliana] gi|332658339|gb|AEE83739.1| metal ion binding protein [Arabidopsis thaliana]

 Score =  156 bits (394), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 131/264 (49%), Positives = 154/264 (58%), Gaps = 24/264 (9%)

Query: 2   GEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDK 61
           G++KVT M LKVDL C+KCYKKVKKVLCKFPQI+DQ+FDEK+N V IKVVCCSPE+I DK
Sbjct: 5   GKEKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDK 64

Query: 62  LCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKP----KEPEK 117
           LC KG GSIK+I I+EP KP  P P+    +   A  K  E  K  +  K     KEPEK
Sbjct: 65  LCSKGGGSIKTIEIVEPPKPPQPQPQQPPQKPKDAQPKAPEKPKEPEKPKQPEKLKEPEK 124

Query: 118 PKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
           PKQPEKPKEPEK K+P     P           P     P    P PP  A    P   P
Sbjct: 125 PKQPEKPKEPEKTKQPAPAPAPAPAPAAKPAPAPAPAPAPAPKQPGPPPQAIPMMPQGQP 184

Query: 178 APVPCHPPVGVCCRECYEGRGGGPCYDLGYGQ-TRHYDGYCGRPVYEGWAGGCDT----- 231
           A         +CC   Y+G  GGP ++ GYG   + Y+ Y GRPVYE W GGC       
Sbjct: 185 A---------MCCGPYYDGY-GGPAFN-GYGMPPQPYECY-GRPVYESWGGGCPPPPPAY 232

Query: 232 RDYYRSRCSDYICEENPTAPCTIM 255
           R  + +RC DY  EENP + C+IM
Sbjct: 233 RQCHVTRC-DYFSEENPQS-CSIM 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194466241|gb|ACF74351.1| putative metal ion-binding protein [Arachis hypogaea]

 Score =  141 bits (355), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/231 (49%), Positives = 139/231 (60%), Gaps = 13/231 (5%)

Query: 5   KVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCC 64
           KVT M LKVDL+C KCYKKVKKVL KFPQI+D+ FDEK N V I VVCCSPEKIRDKLC 
Sbjct: 4   KVTVMKLKVDLECHKCYKKVKKVLAKFPQIRDEKFDEKQNIVTITVVCCSPEKIRDKLCY 63

Query: 65  KGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKP 124
           KG GSIKSI I++P    P P K K+ +       P  P+K        +P+   +P+K 
Sbjct: 64  KGGGSIKSIEIVDP----PKPEKKKDADDKPKAPAPDPPKKKDAAADKPKPKLADEPDKK 119

Query: 125 KEP---EKPKEPEKPKEPEKPK-EPAKPK-EPEKPKEPPKPSPPPPAPAPAPAPAPA--P 177
           K+    EKPK+    ++ +KPK +  KPK +PEKPK+ P  + P P P     P  A  P
Sbjct: 120 KDAGDKEKPKDAAPKEKADKPKGDSEKPKGDPEKPKDKPAEAKPAPPPVKIADPVAAYPP 179

Query: 178 APVPCHPPVGVCCRECYEGRGGGPCYDLGYGQTRHYDGYCGRPVYEGWAGG 228
           AP P   PVG+C    YEG G GPC +   G    YDGY  RPVY+ +  G
Sbjct: 180 APQPMMVPVGICVTG-YEG-GPGPCVNGYAGPVMCYDGYYARPVYDVYVEG 228

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496103|ref|XP_002269930.2| PREDICTED: uncharacterized protein LOC100250652 [Vitis vinifera] gi|297735871|emb|CBI18630.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 144/258 (55%), Gaps = 36/258 (13%)

Query: 6   VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65
           VTTM L+VDL+C +CYKK+KK+LCKFP+I+DQ F EK NTV IKVVCCSP KIRDKL CK
Sbjct: 4   VTTMRLRVDLECDRCYKKIKKLLCKFPEIRDQAFFEKENTVMIKVVCCSPHKIRDKLICK 63

Query: 66  GEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK 125
           G  +IKSI I+ PEKPKPPP KPK P +     +  +P   K  E  K    P++P+ P 
Sbjct: 64  GGKTIKSIEIIVPEKPKPPPEKPKPPPEKPKEPEKPKPPPEKPKEPEKPKPPPEKPKPPP 123

Query: 126 EPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           E + P E  KP +P        PK  EK      P+PPP A  P               P
Sbjct: 124 EIKAPPEKPKPADP--------PKHVEK-----LPAPPPVAGYPQ------------FYP 158

Query: 186 VGVCCRECYEGRGGGPC---YDLGYGQTRHYDGYCGRP-----VYEGWAGGCDTRDYYRS 237
           V VCC+ C++   GGPC   Y + + +   YDGY          Y GW+ GC     Y  
Sbjct: 159 VAVCCKPCFDLGHGGPCHHSYGIPHQRPSSYDGYVKLVPSYDESYGGWSSGCRCNRSYGC 218

Query: 238 RCSDYICEENPTAPCTIM 255
           RC +Y  EENP   CTIM
Sbjct: 219 RC-EYFTEENPA--CTIM 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496105|ref|XP_003635154.1| PREDICTED: uncharacterized protein LOC100853846 [Vitis vinifera]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 118/258 (45%), Positives = 143/258 (55%), Gaps = 36/258 (13%)

Query: 6   VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCK 65
           VTTM L+VDL+C +CYKK+KK+LCKFP+I+DQ F EK NTV IKVVCCSP KIRDKL CK
Sbjct: 4   VTTMRLRVDLECDRCYKKIKKLLCKFPEIRDQAFFEKENTVMIKVVCCSPHKIRDKLICK 63

Query: 66  GEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK 125
           G  +IKSI I+ PEKPKPPP KPK P +     +  +P   K    P+    P++P+ P 
Sbjct: 64  GGKTIKSIEIIVPEKPKPPPEKPKPPPEKPKEPEKPKPPPEKPKPPPEIKAPPEKPKPPP 123

Query: 126 EPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           E  K  E  KP +P        PK  EK             PAPAP      A  P   P
Sbjct: 124 EKPKEPEKPKPADP--------PKHVEK------------LPAPAPV-----AGYPQFYP 158

Query: 186 VGVCCRECYEGRGGGPC---YDLGYGQTRHYDGYCGRP-----VYEGWAGGCDTRDYYRS 237
           V VCC+ C++   GGPC   Y + + +   YDGY          Y GW+ GC     Y  
Sbjct: 159 VAVCCKPCFDLGHGGPCHHSYGIPHQRPSSYDGYVKLVPSYDESYGGWSSGCRCNRSYGC 218

Query: 238 RCSDYICEENPTAPCTIM 255
           RC +Y  EENP   CTIM
Sbjct: 219 RC-EYFTEENPA--CTIM 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486749|gb|ABK95210.1| unknown [Populus trichocarpa]

 Score =  127 bits (319), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 106/261 (40%), Positives = 133/261 (50%), Gaps = 60/261 (22%)

Query: 1   MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRD 60
           M EKKVTTMV+KVDL+C KC+KK+KKVLC+ PQIQ+QI+D+K  TV I VVCCSPEKI++
Sbjct: 1   MAEKKVTTMVMKVDLECEKCHKKIKKVLCRIPQIQNQIYDKKAGTVTITVVCCSPEKIKE 60

Query: 61  KLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQ 120
           K+ CKG  ++KSI I              +  +       K  E  K  E  K     KQ
Sbjct: 61  KIVCKGGEAVKSIEI--------------KVPEKPKEPPAKPKEPEKPKEPEKPKAPSKQ 106

Query: 121 PEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
           P+KP              P      +K K P+KPK                    A    
Sbjct: 107 PDKP--------------PPTVDSDSKLKGPDKPK--------------------ALIVE 132

Query: 181 PCHPPVGVCCRECYEGRGGGPCYDLGYGQTR--HYDGYCGRPVYE----GWAGGCDTRDY 234
           P HP    CC ECY G  GGPCY   YG+     Y+ Y GRPV++        GC    Y
Sbjct: 133 PVHPM--TCCAECYRGISGGPCYH-DYGRPAPPSYEIY-GRPVHDSWGGSGGCGCQRSGY 188

Query: 235 YRSRCSDYICEENPTAPCTIM 255
           Y  RC +Y+CE+NP++ CTIM
Sbjct: 189 YACRC-EYVCEDNPSS-CTIM 207

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315659650|ref|ZP_07912511.1| serine-aspartate repeat-containing protein F [Staphylococcus lugdunensis M23590] gi|315495383|gb|EFU83717.1| serine-aspartate repeat-containing protein F [Staphylococcus lugdunensis M23590]

 Score =  123 bits (309), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 77   EPEKPKPP-----PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
            EP KP  P     P KP EP KP  P KP EP KP +P KP EP KP +P KP EP KP 
Sbjct: 2002 EPNKPNEPGKPSEPGKPNEPNKPSEPGKPSEPGKPSEPNKPSEPGKPNEPSKPSEPNKPS 2061

Query: 132  EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
            EP KP EP KP EP KP EP KP EP KPS P     P     P+    P  P
Sbjct: 2062 EPSKPSEPNKPSEPGKPNEPSKPSEPNKPSEPSKPSEPNKPSEPSKPSEPSKP 2114

Source: Staphylococcus lugdunensis M23590

Species: Staphylococcus lugdunensis

Genus: Staphylococcus

Family: Staphylococcaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|418636420|ref|ZP_13198771.1| putative serine-aspartate repeat protein F [Staphylococcus lugdunensis VCU139] gi|374840992|gb|EHS04472.1| putative serine-aspartate repeat protein F [Staphylococcus lugdunensis VCU139]

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 62/113 (54%), Gaps = 5/113 (4%)

Query: 77   EPEKPKPP-----PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
            EP KP  P     P KP EP KP  P KP EP KP +P KP EP KP +P KP EP KP 
Sbjct: 2002 EPNKPNEPGKPSEPGKPNEPNKPSEPGKPSEPGKPSEPGKPSEPGKPNEPNKPSEPGKPS 2061

Query: 132  EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
            EP KP EP KP EP KP EP KP EP KPS P     P     P+    P  P
Sbjct: 2062 EPSKPSEPSKPSEPNKPSEPGKPNEPSKPSEPNKPSEPGKPSEPSKPSEPGKP 2114

Source: Staphylococcus lugdunensis VCU139

Species: Staphylococcus lugdunensis

Genus: Staphylococcus

Family: Staphylococcaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|297804556|ref|XP_002870162.1| hypothetical protein ARALYDRAFT_493247 [Arabidopsis lyrata subsp. lyrata] gi|297315998|gb|EFH46421.1| hypothetical protein ARALYDRAFT_493247 [Arabidopsis lyrata subsp. lyrata]

 Score =  120 bits (300), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 59/76 (77%), Positives = 67/76 (88%)

Query: 2  GEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDK 61
          G++KVT M LKVDL C+KCYKKVKKVLCKFPQI+DQ+FDEK+N V IKVVCCSPEKI DK
Sbjct: 5  GKEKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPEKIMDK 64

Query: 62 LCCKGEGSIKSIAILE 77
          LC KG GSIK+I I+E
Sbjct: 65 LCSKGGGSIKTIEIVE 80

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494848|gb|AFK35490.1| unknown [Medicago truncatula]

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 68/79 (86%), Gaps = 3/79 (3%)

Query: 1  MGEK---KVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEK 57
          MGEK   KVT M LKVDLQC+KCYKKVKKVLCKFPQI+DQ++DEK N V I VVCCSPEK
Sbjct: 1  MGEKEKVKVTIMKLKVDLQCAKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEK 60

Query: 58 IRDKLCCKGEGSIKSIAIL 76
          IRDK+CCKG G+IKSI I+
Sbjct: 61 IRDKICCKGCGAIKSIEIV 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480619|ref|XP_003610595.1| Proline-rich protein [Medicago truncatula] gi|355511650|gb|AES92792.1| Proline-rich protein [Medicago truncatula]

 Score =  119 bits (299), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 68/79 (86%), Gaps = 3/79 (3%)

Query: 1  MGEK---KVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEK 57
          MGEK   KVT M LKVDLQC+KCYKKVKKVLCKFPQI+DQ++DEK N V I VVCCSPEK
Sbjct: 1  MGEKEKVKVTIMKLKVDLQCAKCYKKVKKVLCKFPQIRDQVYDEKNNIVTITVVCCSPEK 60

Query: 58 IRDKLCCKGEGSIKSIAIL 76
          IRDK+CCKG G+IKSI I+
Sbjct: 61 IRDKICCKGCGAIKSIEIV 79

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:1006589875	254	AT4G16380 [Arabidopsis thalian	0.294	0.295	0.6	7.6e-29
TAIR|locus:2026042	171	AT1G51090 [Arabidopsis thalian	0.286	0.426	0.561	1.1e-22
TAIR|locus:2010192	189	AT1G49420 [Arabidopsis thalian	0.282	0.380	0.520	2.4e-19

TAIR|locus:1006589875 AT4G16380 [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 45/75 (60%), Positives = 54/75 (72%)

Query:     2 GEKKVTTMVLKVDLQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDK 61
             G++KVT M LKVDL C+            FPQI+DQ+FDEK+N V IKVVCCSPE+I DK
Sbjct:     5 GKEKVTMMKLKVDLDCAKCYKKVKKVLCKFPQIRDQLFDEKSNIVIIKVVCCSPERIMDK 64

Query:    62 LCCKGEGSIKSIAIL 76
             LC KG GSIK+I I+
Sbjct:    65 LCSKGGGSIKTIEIV 79

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2026042 AT1G51090 [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 41/73 (56%), Positives = 50/73 (68%)

Query:     4 KKVTTMVLKVDLQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLC 63
             +KV  M LKVDL CS            FPQI D++FDEK+NT+ IKVVC  PE++ +KLC
Sbjct:     3 EKVVMMKLKVDLNCSKCYKKVKKAIRKFPQITDELFDEKSNTIIIKVVCYDPERLMNKLC 62

Query:    64 CKGEGSIKSIAIL 76
              KG+GSIKSI IL
Sbjct:    63 YKGDGSIKSIVIL 75

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0050832 "defense response to fungus" evidence=IEP

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2010192 AT1G49420 [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 2.4e-19, Sum P(2) = 2.4e-19
 Identities = 38/73 (52%), Positives = 47/73 (64%)

Query:     2 GEKKVTTMVLKVD-LQCSXXXXXXXXXXXXFPQIQDQIFDEKTNTVRIKVVCCSPEKIRD 60
             G++KVT M LK + L                PQ++DQ F+E+TNTV IKVVCCSPEK+ D
Sbjct:     5 GKEKVTWMKLKTEPLSNEKNFSKVKKALSSIPQVRDQKFEEETNTVTIKVVCCSPEKVMD 64

Query:    61 KLCCKGEGSIKSI 73
             KLC KG G+IK I
Sbjct:    65 KLCSKGRGAIKLI 77

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	5e-15
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-14
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	3e-13
PRK05306	746	PRK05306, infB, translation initiation factor IF-2	1e-11
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	3e-11
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	4e-11
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-11
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	5e-11
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-10
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-10
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	5e-10
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-09
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-09
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-09
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	3e-09
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-09
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-08
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	2e-08
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	2e-08
PRK06995	484	PRK06995, flhF, flagellar biosynthesis regulator F	2e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	4e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-08
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	5e-08
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	6e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-08
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	9e-08
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-08
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-08
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	1e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-07
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-07
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-07
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	3e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-07
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	3e-07
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-07
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	4e-07
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-07
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-07
pfam02993	238	pfam02993, MCPVI, Minor capsid protein VI	6e-07
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-07
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	9e-07
pfam03286	198	pfam03286, Pox_Ag35, Pox virus Ag35 surface protei	9e-07
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	1e-06
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	1e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
TIGR03490	541	TIGR03490, Mycoplas_LppA, mycoides cluster lipopro	1e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-06
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-06
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-06
PRK12372	413	PRK12372, PRK12372, ribonuclease III; Reviewed	2e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-06
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	3e-06
TIGR02102	1111	TIGR02102, pullulan_Gpos, pullulanase, extracellul	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-06
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	4e-06
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-06
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-06
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	6e-06
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	7e-06
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	1e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-05
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	1e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	1e-05
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	2e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-05
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	2e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-05
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	3e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	4e-05
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	4e-05
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	4e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	5e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	5e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	5e-05
PRK10905	328	PRK10905, PRK10905, cell division protein DamX; Va	5e-05
TIGR02442	633	TIGR02442, Cob-chelat-sub, cobaltochelatase subuni	5e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	6e-05
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	6e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-05
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-05
TIGR02442	633	TIGR02442, Cob-chelat-sub, cobaltochelatase subuni	6e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	7e-05
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	7e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	8e-05
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	8e-05
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	8e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-05
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-05
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	9e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	9e-05
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	9e-05
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	9e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	1e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	1e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	1e-04
COG4932	1531	COG4932, COG4932, Predicted outer membrane protein	1e-04
COG3115	324	COG3115, ZipA, Cell division protein [Cell divisio	1e-04
PTZ00441	576	PTZ00441, PTZ00441, sporozoite surface protein 2 (	1e-04
PRK05703	424	PRK05703, flhF, flagellar biosynthesis regulator F	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	2e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	2e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	2e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	2e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	2e-04
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	2e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK10819	246	PRK10819, PRK10819, transport protein TonB; Provis	3e-04
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	3e-04
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	3e-04
COG4932	1531	COG4932, COG4932, Predicted outer membrane protein	3e-04
COG3115	324	COG3115, ZipA, Cell division protein [Cell divisio	3e-04
PRK00708	209	PRK00708, PRK00708, sec-independent translocase; P	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
COG0810	244	COG0810, TonB, Periplasmic protein TonB, links inn	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	4e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	4e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	4e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	4e-04
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	4e-04
pfam11711	377	pfam11711, Tim54, Inner membrane protein import co	4e-04
PRK07003	830	PRK07003, PRK07003, DNA polymerase III subunits ga	5e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	5e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	5e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	6e-04
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	6e-04
COG3115	324	COG3115, ZipA, Cell division protein [Cell divisio	6e-04
TIGR01347	403	TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp	6e-04
PRK14086	617	PRK14086, dnaA, chromosomal replication initiation	6e-04
pfam13254	414	pfam13254, DUF4045, Domain of unknown function (DU	7e-04
TIGR02442	633	TIGR02442, Cob-chelat-sub, cobaltochelatase subuni	7e-04
PRK13108	460	PRK13108, PRK13108, prolipoprotein diacylglyceryl	7e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	8e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	8e-04
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK03427	333	PRK03427, PRK03427, cell division protein ZipA; Pr	0.001
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	0.001
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.001
TIGR02102	1111	TIGR02102, pullulan_Gpos, pullulanase, extracellul	0.001
PRK10263	1355	PRK10263, PRK10263, DNA translocase FtsK; Provisio	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.001
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.001
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.001
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.001
PRK14954	620	PRK14954, PRK14954, DNA polymerase III subunits ga	0.001
COG4932	1531	COG4932, COG4932, Predicted outer membrane protein	0.001
COG4932	1531	COG4932, COG4932, Predicted outer membrane protein	0.001
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.001
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.001
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.001
PRK14963	504	PRK14963, PRK14963, DNA polymerase III subunits ga	0.001
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.001
PLN03209	576	PLN03209, PLN03209, translocon at the inner envelo	0.001
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	0.001
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.002
COG3087	264	COG3087, FtsN, Cell division protein [Cell divisio	0.002
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	0.002
pfam11711	377	pfam11711, Tim54, Inner membrane protein import co	0.002
PTZ00108	1388	PTZ00108, PTZ00108, DNA topoisomerase 2-like prote	0.002
pfam14181	155	pfam14181, YqfQ, YqfQ-like protein	0.002
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.002
PRK10547	670	PRK10547, PRK10547, chemotaxis protein CheA; Provi	0.002
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PRK10811	1068	PRK10811, rne, ribonuclease E; Reviewed	0.002
pfam06217	301	pfam06217, GAGA_bind, GAGA binding protein-like fa	0.002
PTZ00449	943	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry anti	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.003
PRK10905	328	PRK10905, PRK10905, cell division protein DamX; Va	0.003
PRK05996	423	PRK05996, motB, flagellar motor protein MotB; Vali	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.003
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.003
PRK06347	592	PRK06347, PRK06347, autolysin; Reviewed	0.003
pfam03213	325	pfam03213, Pox_P35, Poxvirus P35 protein	0.003
pfam05110	1154	pfam05110, AF-4, AF-4 proto-oncoprotein	0.003
pfam05053	618	pfam05053, Menin, Menin	0.003
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.003
PRK08119	382	PRK08119, PRK08119, flagellar motor switch protein	0.003
PLN02226	463	PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E	0.003
pfam10243	506	pfam10243, MIP-T3, Microtubule-binding protein MIP	0.004
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	0.004
COG5373	931	COG5373, COG5373, Predicted membrane protein [Func	0.004
TIGR02102	1111	TIGR02102, pullulan_Gpos, pullulanase, extracellul	0.004
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.004
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	0.004
COG2948	360	COG2948, VirB10, Type IV secretory pathway, VirB10	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.004
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	0.004
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	0.004
pfam06375	561	pfam06375, BLVR, Bovine leukaemia virus receptor (	0.004

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 74.0 bits (181), Expect = 5e-15
 Identities = 41/98 (41%), Positives = 60/98 (61%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
           KP   P   K+PE PK P+ PK+PE+PK+P++P+  ++P +P+ PK PE    P+ PK P
Sbjct: 568 KPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRP 627

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
           E PK P +P  P++P  P +P  P    +P P  +P P
Sbjct: 628 ESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 72.4 bits (177), Expect = 2e-14
 Identities = 38/92 (41%), Positives = 55/92 (59%)

Query: 85  PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKE 144
           P  PK+P+ PK PE+PK+P++P+  ++P  P+ PK PE    P+ PK PE PK P++P  
Sbjct: 579 PEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPP 638

Query: 145 PAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPA 176
           P +P  PE+P+ P     P P  +P P   P 
Sbjct: 639 PQRPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 68.9 bits (168), Expect = 3e-13
 Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 1/106 (0%)

Query: 82  KPPPPKPKEPEK-PKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           KP P K  +P K P   +KP+ P+ PK P+ P+EP+KPK+P   + P +PK P+ P+  +
Sbjct: 560 KPGPAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLD 619

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
            PK P +P+ P+ PK PP P  P     P           P  P  
Sbjct: 620 IPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665

Length = 943

>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 21/126 (16%), Positives = 41/126 (32%)

Query: 54  SPEKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPK 113
           S +++ +KL   G       + +E E+ +    K +  E+ KA  +     + ++  K +
Sbjct: 16  SSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAE 75

Query: 114 EPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAP 173
                   E  +     +   +P E E  +         K K+  K    P      P  
Sbjct: 76  AAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKR 135

Query: 174 APAPAP 179
             A   
Sbjct: 136 KAARGG 141

Length = 746

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 62.8 bits (152), Expect = 3e-11
 Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 2/93 (2%)

Query: 65  KGEGSIKSIAILEPEKPKPP--PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPE 122
           K E         +PE+PK P  P   + P +PK+P+ P+  + PK P++P+ P+ PK+P 
Sbjct: 578 KPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPP 637

Query: 123 KPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPK 155
            P+ P  P+ PE PK  + PK P  PK P  PK
Sbjct: 638 PPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPK 670

Length = 943

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 62.1 bits (151), Expect = 4e-11
 Identities = 26/77 (33%), Positives = 36/77 (46%)

Query: 86  PKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEP 145
            K K P+KPK   +P  P  PK+  KP E       EKP +P K  E  +   P+     
Sbjct: 45  EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPS 104

Query: 146 AKPKEPEKPKEPPKPSP 162
            + +E E+P+E P P  
Sbjct: 105 TESEEEEEPEETPDPIA 121

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 9/107 (8%)

Query: 81   PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
             + P  KP  P +P             +P   +  E    P  P +PE+P +P+ P  P+
Sbjct: 2868 SRSPAAKPAAPARPPVRRLA-------RPAVSRSTESFALP--PDQPERPPQPQAPPPPQ 2918

Query: 141  KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
               +P  P +P+ P  PP    PP AP   PA A  P+     P +G
Sbjct: 2919 PQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLG 2965

Length = 3151

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 62.4 bits (151), Expect = 5e-11
 Identities = 36/107 (33%), Positives = 52/107 (48%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
           E       +  EP++   P + KE E  K+P   KE +  K P   K+PE PK+P+ PK+
Sbjct: 531 EGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKHPKD 590

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           PE+PK+P +P+  ++P  P  P  P     P     P     P  PP
Sbjct: 591 PEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPP 637

Length = 943

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 5/82 (6%)

Query: 77  EPEKPKPP-----PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           EP+KPK P     P +PK P+ P+  + PK P++P+ P+ PK P  P++P  P+ PE PK
Sbjct: 593 EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK 652

Query: 132 EPEKPKEPEKPKEPAKPKEPEK 153
             + PK P+ PK P  PK  EK
Sbjct: 653 IIKSPKPPKSPKPPFDPKFKEK 674

Length = 943

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 60.0 bits (145), Expect = 3e-10
 Identities = 32/110 (29%), Positives = 35/110 (31%)

Query: 78   PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
               P PP P       P  P  P  P  P  P  P  P +P +P     P  P  P  P 
Sbjct: 2717 SATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA 2776

Query: 138  EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
                 +                PSP  PA  PA   APA A  P   P G
Sbjct: 2777 AGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAG 2826

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 31/115 (26%), Positives = 40/115 (34%), Gaps = 11/115 (9%)

Query: 78   PEKPKPPPPKPKEPEKPKAP-----------EKPKEPEKPKQPEKPKEPEKPKQPEKPKE 126
            P  P  PPP         AP               +P  P +P   +             
Sbjct: 2839 PPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESF 2898

Query: 127  PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
               P +PE+P +P+ P  P    +P  P +P  P PPPP P P  AP   PA   
Sbjct: 2899 ALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAG 2953

Length = 3151

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 58.6 bits (142), Expect = 5e-10
 Identities = 28/114 (24%), Positives = 40/114 (35%), Gaps = 19/114 (16%)

Query: 78  PEKPKPPPPKPKEPEKPKAP----------------EKPKEPEKPKQPEKPKEPEKPKQP 121
           P++  P     K      +                 EK K P+KPK+  +P  P  PK+ 
Sbjct: 9   PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKS 68

Query: 122 EKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPK---EPPKPSPPPPAPAPAPA 172
            KP E       EKP +P K  E  +   P+      E  +   P   P P  +
Sbjct: 69  SKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIAS 122

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 39/111 (35%), Positives = 53/111 (47%), Gaps = 2/111 (1%)

Query: 68  GSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEP 127
            ++  +A    E P    P+P+     + P+ P EPE P +P  PK  EKPK  +KPK+P
Sbjct: 39  LAVFLLAAKVLEAP-TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKP 97

Query: 128 EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
            KPK   KPK   K K   KPK+P        P+ P     P  A + + A
Sbjct: 98  -KPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGA 147

Length = 244

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 33/104 (31%), Positives = 48/104 (46%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
            E+P+P P  P+E  KP    +      P +P++  +PEK  +  KPK   KPK   K K
Sbjct: 53  TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVK 112

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
              KPK+P      + P  P +P+ PP A + + A     A   
Sbjct: 113 PQPKPKKPPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYL 156

Length = 244

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 56.8 bits (137), Expect = 2e-09
 Identities = 35/105 (33%), Positives = 54/105 (51%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           + +  +    K ++P++     KPKE  K K+P K KE EK K+ E+P++ E+ K+ E+ 
Sbjct: 110 KEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           +   +PK+P K K P K KEPP+      A   A    P    V 
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVN 214

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 31/88 (35%), Positives = 45/88 (51%)

Query: 94  PKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEK 153
            +AP +  +PE     E+PK P +P+ P +P  P+  ++P+  K+P+KPK   KPK   K
Sbjct: 49  LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108

Query: 154 PKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           PK  P+P P  P    A     AP    
Sbjct: 109 PKVKPQPKPKKPPSKTAAKAPAAPNQPA 136

Length = 244

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 23/112 (20%), Positives = 29/112 (25%), Gaps = 7/112 (6%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEK-----PKQPEKPKEPEKPKQPEKPKEPEKPKE 132
           P +P+   P      +  A   P          P  P     P     P        P  
Sbjct: 381 PARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAA 440

Query: 133 PEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
                            E      P + +P P   + APAPA APA     P
Sbjct: 441 APAAVALAPAPPAQAAPETVAI--PVRVAPEPAVASAAPAPAAAPAAARLTP 490

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 27/111 (24%), Positives = 29/111 (26%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
                  PP +   P  P AP  P  P        P E      P        PK    P
Sbjct: 601 PAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVP 660

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
              +             P  PP    P    APA A    PAP P   P  
Sbjct: 661 DASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPA 711

Length = 824

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 33/120 (27%), Positives = 35/120 (29%), Gaps = 18/120 (15%)

Query: 84   PPPKPKEPEKPKAPEKPKEPEKP-KQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
            PPP P  PE          P  P     +   P  P  P  P  P  P  P  P  P +P
Sbjct: 2701 PPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARP 2760

Query: 143  KEPAKPKEPEKPKEPPKPSPP-----------------PPAPAPAPAPAPAPAPVPCHPP 185
               A P  P  P  P    P                  P    PA  PA   AP    PP
Sbjct: 2761 PTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPP 2820

Length = 3151

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 37/110 (33%), Positives = 46/110 (41%), Gaps = 4/110 (3%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           S+ ++ P   +PP      PE    PE   EPE   +P K      PK   KPK   KPK
Sbjct: 49  SVTMVAPADLEPPQAVQPPPEPVVEPEP--EPEPIPEPPKEAPVVIPKPEPKPKPKPKPK 106

Query: 132 EPEKPKEPEKPKEPAKPKE--PEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
                K  E+PK   KP E  P  P E   P+ P  + A A A  P  + 
Sbjct: 107 PKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSV 156

Length = 246

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 53.9 bits (130), Expect = 2e-08
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 5/115 (4%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           E E  +P P    +P    A  +    + P+    P+   +P QP      +   +P+  
Sbjct: 80  EHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPVQQPAYQPQPE 139

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPP-----PPAPAPAPAPAPAPAPVPCHPPV 186
           +  ++P  P     P+     P+P+        P  AP P P   PAPV   P  
Sbjct: 140 QPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKR 194

Length = 333

>gnl|CDD|235904 PRK06995, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 22/107 (20%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           +        P   P     P  P A   P   E  K+    +E     +   P  PE   
Sbjct: 57  AAPAAAQPPPAAAPAAVSRPAAPAAEPAPWLVEHAKRLTAQREQL-VARAAAPAAPE--- 112

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
                + P  P E A  +   +       + P P      A A A A
Sbjct: 113 ----AQAPAAPAERAAAENAARRLARAAAAAPRPRVPADAAAAVADA 155

Length = 484

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 16/82 (19%), Positives = 16/82 (19%), Gaps = 1/82 (1%)

Query: 98  EKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEP 157
                                          K      P  P      A PK P      
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPK-PAAAAAA 92

Query: 158 PKPSPPPPAPAPAPAPAPAPAP 179
                 PPA A A APA A   
Sbjct: 93  AAAPAAPPAAAAAAAPAAAAVE 114

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 83   PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
            PPPP P              P    +P +P    + ++P+ P +  +P+ P   +     
Sbjct: 2551 PPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD--- 2607

Query: 143  KEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
                       P+ P  PSP PP       P P+P+P    P   
Sbjct: 2608 -----------PRGPAPPSPLPPDTHAPDPPPPSPSPAANEPDPH 2641

Length = 3151

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 39/110 (35%), Positives = 48/110 (43%), Gaps = 2/110 (1%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
                E        P        K  E P E  +P+     ++P+ P +PE P EP  PK
Sbjct: 24  VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPK 83

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
             EKPK  +KPK+P KPK   KPK  PK   P P P   P+   A AP  
Sbjct: 84  PKEKPKPEKKPKKP-KPKPKPKPKPKPKV-KPQPKPKKPPSKTAAKAPAA 131

Length = 244

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 75  ILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKP-----KQPEKPKEPEKPKQPEKPKEPEK 129
           I   E  +   P+P EP   K  E+    ++      +  +K +  +  +QPE+ +  E+
Sbjct: 67  IKALEDRQIGVPQPTEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQ 126

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP---APAPAPAPAPVP 181
           P+   +  + +      +P +P+   E P+P  P PAP P   AP    AP P P
Sbjct: 127 PRTQSQKAQSQATTVQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKP 181

Length = 264

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 52.6 bits (127), Expect = 7e-08
 Identities = 15/77 (19%), Positives = 16/77 (20%)

Query: 111 KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA 170
            P     P                 P           P     P  PPKP+    A A  
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 171 PAPAPAPAPVPCHPPVG 187
            AP  A A         
Sbjct: 97  AAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.6 bits (126), Expect = 8e-08
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 11/110 (10%)

Query: 77   EPEKPKPPPPKPKEPEKPKAPEKPK-EPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
            +P  P PP   P  P++   P +P   P +P    + + P+ P Q  +P+ P   +    
Sbjct: 2550 DPPPPLPPAAPPAAPDRSVPPPRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGD-- 2607

Query: 136  PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
                  P+ PA P     P +   P PPPP+P+PA        P    PP
Sbjct: 2608 ------PRGPAPPSPL--PPDTHAPDPPPPSPSPAANEPDPHPPPTVPPP 2649

Length = 3151

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 52.4 bits (125), Expect = 9e-08
 Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 7/99 (7%)

Query: 78  PEKPKPPPPKP-------KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
           PE    PP  P        E E  K  ++PKE  KP + ++ +  +KP   ++ K  + P
Sbjct: 514 PEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKPSKIP 573

Query: 131 KEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP 169
              +KP+ P+ PK P  P+EP+KPK P     P    +P
Sbjct: 574 TLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSP 612

Length = 943

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 29/114 (25%), Positives = 35/114 (30%), Gaps = 8/114 (7%)

Query: 81   PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
            P   P  P  P  P  P +P     P  P  P  P         +         +   P 
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

Query: 141  --KPKEPAKPKEPEKPKEPPK-----PSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
               P +P           PP      P PPP +  P  AP P P P P   P+G
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPT-APPPPPGPPPPSLPLG 2853

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 28/102 (27%), Positives = 30/102 (29%)

Query: 84  PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK 143
           P P     E P AP     PE+  +P  P  P  P  P        P E      P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 144 EPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
               PK    P         P     A   AP PAP P  P 
Sbjct: 650 PEHHPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPA 691

Length = 824

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 51.8 bits (124), Expect = 1e-07
 Identities = 34/95 (35%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 86  PKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE-KPKEPEKPKE 144
              K+PEK   PE       PK P+KP   E  +        E   E       PEK  +
Sbjct: 29  SNSKQPEKK--PEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPD 86

Query: 145 PAKPKE-PEKPK-EPPKPSPPPPAPAPAPAPAPAP 177
           P+K KE  EKPK EP KP   P A  P    A  P
Sbjct: 87  PSKNKEEIEKPKDEPKKPDKKPQADQPNNVHADQP 121

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 14/120 (11%)

Query: 80   KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
            +P            P  PE+P +P+ P  P+   +P  P QP+ P  P  P  P+ P  P
Sbjct: 2888 RPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP--PPPPPRPQPPLAP 2945

Query: 140  EKPKEPAKPKEPEKPK-----------EPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
                  A       P+             P+   P PAP    APA +  P+  H    V
Sbjct: 2946 TTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFRVPQPAP-SREAPASSTPPLTGHSLSRV 3004

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 23/109 (21%), Positives = 25/109 (22%), Gaps = 1/109 (0%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPE-KPKEPEKPKEPEKPKEP 139
                P         AP     P     P+    P     P            P  P   
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
               +PA                PP APAPA APA   AP         
Sbjct: 461 APSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPAAPAAPAGADDA 509

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 34/134 (25%), Positives = 40/134 (29%), Gaps = 19/134 (14%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEK-------------PKEPEKPKQPEKPKEPEKPKQ 120
           A+ E E P P PP  +E E                                P  P  P  
Sbjct: 141 ALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSP 200

Query: 121 PEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA------PAPAPA 174
           PE P  P     P  P   +    P  P+ P  P  PP P+ PPP P           P 
Sbjct: 201 PEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPT 260

Query: 175 PAPAPVPCHPPVGV 188
           P  A     P  G+
Sbjct: 261 PPSASATPAPIGGI 274

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 119 KQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
                P      K  +   E  K   P     P   K  P  +  PP PAPA  P P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP-PAASKPTPPAAAKPPEPAPAAKPPPTP 181

Length = 418

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 50.7 bits (121), Expect = 3e-07
 Identities = 27/92 (29%), Positives = 42/92 (45%)

Query: 71  KSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
            S       KP   P      E+ K  E+ KE +K K+ +  +EP+  K  E+ KE   P
Sbjct: 84  GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143

Query: 131 KEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSP 162
           KE EK KE +  +   + +E ++ +   K  P
Sbjct: 144 KEKEKEKEKKVEEPRDREEEKKRERVRAKSRP 175

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 11/82 (13%), Positives = 12/82 (14%)

Query: 104 EKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPP 163
                                          K      P  PA       PK     +  
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 164 PPAPAPAPAPAPAPAPVPCHPP 185
               AP  A A A         
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 154 PKEPPKPSPPP-PAPAPAPAPAPAPAPVPCHPPV 186
           P  PP P P P P P P P P P P P P + PV
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPV 953

Length = 1250

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.6 bits (121), Expect = 3e-07
 Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 1/100 (1%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
              P P K        +    ++ + P        P     P+   EP           P
Sbjct: 445 GDAPVPAKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATP 504

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPP-APAPAPAPAPAPA 178
               +   P    +   P   +PP P A  P PA A   A
Sbjct: 505 AAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544

Length = 830

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 28/114 (24%), Positives = 32/114 (28%), Gaps = 10/114 (8%)

Query: 84   PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK-----E 138
            PP  P  P  P  P +P  P     P  P  P  P      +                  
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

Query: 139  PEKPKEPAKPKEPEKPKEPPK-----PSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
            P  P +P           PP      P PPP +  P   P P   P P  P  G
Sbjct: 2801 PWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGG 2854

Length = 3151

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 102 EPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE--PEKPKEPAKPKEPEKPKEPPK 159
           E       +  ++   P+  E       P          PE P        P   +E   
Sbjct: 41  EGAAGPVAKAAEQMAAPEAAEAA-----PLPAAAESIASPEVPPPVP----PAPAQEGEA 91

Query: 160 PS--PP--PPAPAPAPAPAPAPAPVPCHPP 185
           P+   P   PAP+ APAPA    P     P
Sbjct: 92  PAAEQPSAVPAPSAAPAPAEPVEPSLAANP 121

Length = 931

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 21/114 (18%), Positives = 27/114 (23%), Gaps = 9/114 (7%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPE-KPKQPEKPKEPEK-----PKQPEKPKEPEKPKEPE 134
               P + K P +P+A      P  +      P          P  P     P     P 
Sbjct: 371 EAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA 430

Query: 135 ---KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
                  P               +  P+    P   AP PA A A       P 
Sbjct: 431 AAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPA 484

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 26/108 (24%), Positives = 31/108 (28%), Gaps = 1/108 (0%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P     +P  P  P AP  P        P +      P        P+    P+     +
Sbjct: 608 PPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGD 667

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
                A    P  P  P      P APA A    PAPAP    P    
Sbjct: 668 GWPAKAGGAAPAAP-PPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQA 714

Length = 824

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 16/62 (25%), Positives = 19/62 (30%)

Query: 124 PKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCH 183
              P      +  K   +  + A P         P P      P PAPA  P P PV   
Sbjct: 126 AAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARA 185

Query: 184 PP 185
            P
Sbjct: 186 DP 187

Length = 418

>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI

 Score = 48.6 bits (116), Expect = 6e-07
 Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 11/109 (10%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
             + +P P +    +  +A +    P+  ++   P  PE P    +      P   E+P 
Sbjct: 110 LGEEEPAPQEETVADPIQALQPRPRPD-VEEVLVPAAPEPP--SYEETIKPGPAPVEEPV 166

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           +      PA           P     PPAP P P   P P+ +  H   
Sbjct: 167 DSMAIAVPAIDT--------PVTLELPPAPQPPPPVVPQPSTMVVHRRS 207

This minor capsid protein may act as a link between the external capsid and the internal DNA-protein core. The C-terminal 11 residues may function as a protease cofactor leading to enzyme activation. Length = 238

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 49.3 bits (118), Expect = 7e-07
 Identities = 28/119 (23%), Positives = 44/119 (36%), Gaps = 12/119 (10%)

Query: 80  KPKPPPPKPKEPEKPK-APEKPKEPEKPK---QPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
           +    P   +E E  + +P+   +P       +    + PE    P+    P +P     
Sbjct: 70  RVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQPV 129

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA--------PAPAPAPAPVPCHPPV 186
            +   +P+     ++P  P+  P P P   AP PA        P  AP P PV    PV
Sbjct: 130 QQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPV 188

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 9e-07
 Identities = 15/83 (18%), Positives = 15/83 (18%)

Query: 99  KPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
            P     P                 P           P     P  P KP         P
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 159 KPSPPPPAPAPAPAPAPAPAPVP 181
              P   A A   A A      P
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTP 119

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 9e-07
 Identities = 14/80 (17%), Positives = 14/80 (17%), Gaps = 1/80 (1%)

Query: 110 EKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSP-PPPAPA 168
                                          K      P  P        P P    A A
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 169 PAPAPAPAPAPVPCHPPVGV 188
            APA  PA A         V
Sbjct: 94  AAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein

 Score = 47.8 bits (114), Expect = 9e-07
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 2/99 (2%)

Query: 56  EKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEP 115
           E+IR  +    E   K    + PE  + P PK  + ++P  P KP   +K K+ +K K  
Sbjct: 18  EEIRAHVRSTTESVDKVRDDIFPEDIEIPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLT 77

Query: 116 EKPKQPEKP--KEPEKPKEPEKPKEPEKPKEPAKPKEPE 152
           E+ K+PE    K  E   +P+  +E    +E A      
Sbjct: 78  EEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLS 116

Length = 198

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 26/126 (20%)

Query: 78  PEKPKPP--PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEK------------ 123
           PE PK P  PP P+ P  P+ PE PK  + PK P+ PK P  PK  EK            
Sbjct: 627 PESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKS 686

Query: 124 ------------PKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
                        +   K   PE P  P     P  PK P   + P +P   P A  P  
Sbjct: 687 KETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDD 746

Query: 172 APAPAP 177
                P
Sbjct: 747 IEFFTP 752

Length = 943

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 28/103 (27%), Positives = 44/103 (42%)

Query: 76  LEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
            EP + +P PP   E      P KPKE  KP++  K  +P+   +P+   + +   +P+K
Sbjct: 60  PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
           P      K PA P +P +P      S     P+ +       A
Sbjct: 120 PPSKTAAKAPAAPNQPARPPSAASASGAATGPSASYLSGLRRA 162

Length = 244

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 12/79 (15%), Positives = 14/79 (17%)

Query: 93  KPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPE 152
            P +   P                 P           P     P  P KP   A      
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 153 KPKEPPKPSPPPPAPAPAP 171
                   +  P A A   
Sbjct: 97  AAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72 family

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 5/93 (5%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPE-KPKEPEKPKEPEKPK 137
           +  K P  KP E   PK P+KP   E  +        E   +       PEK  +P K K
Sbjct: 33  QPEKKPEIKPNE-NTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTNPEKKPDPSKNK 91

Query: 138 E-PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP 169
           E  EKPK+   PK+P+K  +  +P+        
Sbjct: 92  EEIEKPKDE--PKKPDKKPQADQPNNVHADQPN 122

Members of this protein family occur in Mycoplasma mycoides, Mycoplasma hyopneumoniae, and related Mycoplasmas in small paralogous families that may also include truncated forms and/or pseudogenes. Members are predicted lipoproteins with a conserved signal peptidase II processing and lipid attachment site. Note that the name for certain characterized members, p72, reflects an anomalous apparent molecular weight, given a theoretical MW of about 61 kDa. Length = 541

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 24/139 (17%), Positives = 31/139 (22%), Gaps = 31/139 (22%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
                   ++ + P        P     P+   EP           P    +   P    
Sbjct: 458 SADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAAS 517

Query: 141 KPKEPAKPKEPEKPKEPPKPS-------------------------------PPPPAPAP 169
           +   PA    P     PP P+                                   A  P
Sbjct: 518 REDAPAAAAPPAPEARPPTPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKP 577

Query: 170 APAPAPAPAPVPCHPPVGV 188
           A APA AP P      V V
Sbjct: 578 AAAPAAAPKPAAPRVAVQV 596

Length = 830

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 26/109 (23%), Positives = 33/109 (30%), Gaps = 12/109 (11%)

Query: 73  IAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKE 132
           +A++E      P P   +P KP A         P    +PK       P        PKE
Sbjct: 353 LAVIEALLVPVPAP---QPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP--------PKE 401

Query: 133 PEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           P   +    P  P +P  P  P  P        A  P         P P
Sbjct: 402 P-VRETATPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAP 449

Length = 585

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 48.5 bits (115), Expect = 2e-06
 Identities = 41/144 (28%), Positives = 54/144 (37%), Gaps = 12/144 (8%)

Query: 54  SPEKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPK 113
            P+K +     +     KS  + E       P +P+ P+ PK P  P+ P  P++PE PK
Sbjct: 593 EPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPK 652

Query: 114 EPEKPKQPEKPKEPEKPKEPEK-----PKEPEKPKE-------PAKPKEPEKPKEPPKPS 161
             + PK P+ PK P  PK  EK          K KE           +   K   P  P 
Sbjct: 653 IIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPG 712

Query: 162 PPPPAPAPAPAPAPAPAPVPCHPP 185
            P   P P P   P     P  P 
Sbjct: 713 TPFTTPRPLPPKLPRDEEFPFEPI 736

Length = 943

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.0 bits (114), Expect = 2e-06
 Identities = 31/120 (25%), Positives = 42/120 (35%), Gaps = 12/120 (10%)

Query: 78   PEKPKPPPPKPKEPEKPKAPEKPKEPEKPK-QPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P  P P PP    P+ P     P   E     P     PE+P+    P    +P+   + 
Sbjct: 2611 PAPPSPLPPDTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRL 2670

Query: 137  KEPEKPKEPAKPKEPEKPKEPP---------KPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
                +   P  P+ P +    P          P PPPP P PAP    +  P+P  P   
Sbjct: 2671 GRAAQASSP--PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAA 2728

Length = 3151

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 24/104 (23%), Positives = 34/104 (32%), Gaps = 1/104 (0%)

Query: 85  PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKE 144
               +E                 +  +    E   +PE P+E  KP    +      P +
Sbjct: 24  VFLHQEDFVGIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPK 83

Query: 145 PAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
           P +  +PEK  + PKP P P  P P P   P P P         
Sbjct: 84  PKEKPKPEKKPKKPKPKPKPK-PKPKPKVKPQPKPKKPPSKTAA 126

Length = 244

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 14/92 (15%), Positives = 15/92 (16%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
            P     P A               P           P     P  P KP          
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 147 KPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
                      P  +       P    A A A
Sbjct: 97  AAPPAAAAAAAPAAAAVEDEVTPLRGAAAAVA 128

Length = 1228

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
             PP   P      KA      PEKPK      EP    +P  P   + P+     K P 
Sbjct: 122 GAPPAAAPAAAAAAKAE--KTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPP 179

Query: 141 KPKEPAKPKE 150
            P   A P+E
Sbjct: 180 TPVARADPRE 189

Length = 418

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/57 (31%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 125 KEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
                P      K  +   E  K   P     P    P PPA A  P PAPA  P P
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEP-PAASKPTPPAAAKPPEPAPAAKPPP 179

Length = 418

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 25/91 (27%), Positives = 29/91 (31%), Gaps = 3/91 (3%)

Query: 96  APEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPK 155
            P    +P KP           P    +PK       P  PKEP   +    P  P +P 
Sbjct: 361 VPVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIP--PKEP-VRETATPPPVPPRPV 417

Query: 156 EPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
            PP P  P  AP    A  P        PP 
Sbjct: 418 APPVPHTPESAPKLTRAAIPVDEKPKYTPPA 448

Length = 585

>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 22/129 (17%), Positives = 34/129 (26%), Gaps = 12/129 (9%)

Query: 65  KGEGSIKSIAILEPEKPKPPPPKPKEPEKPKA----------PEKPKEPEKPKQPEKPKE 114
                 ++ A           P  +    P A           +K +   KP   +K  +
Sbjct: 269 AAAREARAAAAAPAATAAAAAPAEEPAVAPMAAIRAAHVETAADKGERAAKPAAADKAAD 328

Query: 115 --PEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPA 172
              ++P   EK  E      P    +P            +KP      +   PA A   A
Sbjct: 329 KPADRPDAAEKAAEKPAEAAPRAADKPAGQAADPASSSADKPGASADAAARTPARARDAA 388

Query: 173 PAPAPAPVP 181
              A  P  
Sbjct: 389 APDADTPPG 397

Length = 413

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 24/101 (23%), Positives = 26/101 (25%), Gaps = 2/101 (1%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P    P         A         P     P     P+    P     P  P       
Sbjct: 394 PAAAAPSAAAA--APAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAG 451

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
               P     P     P   + P P  APAPAP  APAP  
Sbjct: 452 GAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492

Length = 824

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 4/107 (3%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK----EPEKPKEPEK 135
             +  P + +  E+ +  +K +  +  +QPE+ +  E+P+   +         + +  + 
Sbjct: 89  AERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKP 148

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPC 182
              PEKP+  A    PE  ++ PK    PP    A   A     + C
Sbjct: 149 KPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAEDAAETRYMLQC 195

Length = 264

>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 82   KPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQP--EKPKEPEKPKEPEKPKEP 139
            K PPP   EP+ PK P +  +  KPK    PK+ + P  P     +  E PK  E+ KE 
Sbjct: 1012 KTPPPPEHEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPPGSDDENGETPKGNEEKKEE 1071

Query: 140  EKPKEPAKPKEPEK 153
            +  K    P    K
Sbjct: 1072 QPDKGANLPNTGTK 1085

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 30/116 (25%), Positives = 34/116 (29%), Gaps = 5/116 (4%)

Query: 78   PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKE----- 132
              +   PP +P+                P  P    EP           P  P       
Sbjct: 2673 AAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQAS 2732

Query: 133  PEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
            P  P  P  P  PA P  P  P  P +P      PAPAP  APA  P        V
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAV 2788

Length = 3151

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 39/115 (33%), Positives = 48/115 (41%), Gaps = 12/115 (10%)

Query: 79  EKPKPPPP------KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKE 132
           E P P  P       P + E P+A + P EP    +PE    PE PK+        +PK 
Sbjct: 40  ELPAPAQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIPKPEPKP 99

Query: 133 PEKPKEPEKP--KEPAKPKEPEKPKEP----PKPSPPPPAPAPAPAPAPAPAPVP 181
             KPK   KP  K   +PK   KP EP    P  +  P  P  + A A A  PV 
Sbjct: 100 KPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVT 154

Length = 246

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 16/97 (16%), Positives = 24/97 (24%), Gaps = 1/97 (1%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
                          +  + P +      P     P+   +P           P    + 
Sbjct: 451 AKANARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDA 510

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPA 176
             P   ++   P     P  P   PP PA A   A A
Sbjct: 511 RAPAAASREDAPAAAAPPA-PEARPPTPAAAAPAARA 546

Length = 830

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 23/108 (21%), Positives = 27/108 (25%), Gaps = 1/108 (0%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
                 P P         AP               + P         +   +        
Sbjct: 391 APAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAP 450

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
            P     PA    P      P  +    APA A APA APAP    PP
Sbjct: 451 APAPAAAPAAAARPAAAGPRPVAAAAAAAPARA-APAAAPAPADDDPP 497

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 24/106 (22%), Positives = 28/106 (26%), Gaps = 1/106 (0%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
               P          A         P     P + + P   E P E   P  P +P    
Sbjct: 460 AAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASP-APAQPDAAP 518

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
                    +P             PAPA APAP  A A  P   P 
Sbjct: 519 AGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPR 564

Length = 700

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 26/101 (25%), Positives = 28/101 (27%), Gaps = 2/101 (1%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
           P      P     P    AP+    P     P  P           P     P     P 
Sbjct: 410 PAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAP- 468

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
            P    EP     P  P  P  P+  P APA   APA A  
Sbjct: 469 APAAAPEPTAAPAPAPPAAPA-PAAAPAAPAAPAAPAGADD 508

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 11/82 (13%), Positives = 12/82 (14%)

Query: 92  EKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEP 151
                                          K      P  P        PK  A     
Sbjct: 34  ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93

Query: 152 EKPKEPPKPSPPPPAPAPAPAP 173
             P  PP  +      A A   
Sbjct: 94  AAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 1/106 (0%)

Query: 82  KPPPPKPKEPEKPKAP-EKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
                 P   ++ +A    P+   +P            + PE    P+    P +P    
Sbjct: 69  HRVNHAPANAQEHEAARPSPQHQYQPPYASAQPRQPVQQPPEAQVPPQHAPRPAQPAPQP 128

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             +   +P+  +  ++P  P   P       AP PA        PV
Sbjct: 129 VQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEPV 174

Length = 333

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 71  KSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
           +S     P+KPK    +P  P  PK   KP E       EKP +P K  +  +   P+  
Sbjct: 43  QSEKAKPPKKPKEAS-RPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSK 101

Query: 131 K---EPEKPKEPEKPKEPA 146
               E E+ +EPE+  +P 
Sbjct: 102 APSTESEEEEEPEETPDPI 120

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 19/127 (14%)

Query: 77   EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            +   P PPPP P        P  P     P++P     P +  +P + +   +  +   P
Sbjct: 2620 DTHAPDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSP 2679

Query: 137  KEPEKPKEPAKP---------KEPEKPKEPPKPSPP--------PPAPAPAPAPAPAPAP 179
              P++P+  A            +P  P   P+P+P         PP PA A   +PA   
Sbjct: 2680 --PQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPA 2737

Query: 180  VPCHPPV 186
             P  P V
Sbjct: 2738 APAPPAV 2744

Length = 3151

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 31/114 (27%), Positives = 37/114 (32%), Gaps = 7/114 (6%)

Query: 67  EGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKE 126
           E  +  +   +P KP    P P  P  P    +PK       P K    E    P  P  
Sbjct: 357 EALLVPVPAPQPAKPTAAAPSPVRP-TPAPSTRPKAAAAANIPPKEPVRETATPPPVPPR 415

Query: 127 PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
           P  P  P  P+   K    A P + EKPK       PP  P        A   V
Sbjct: 416 PVAPPVPHTPESAPKLTRAAIPVD-EKPK-----YTPPAPPKEEEKALIADGDV 463

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.6 bits (108), Expect = 1e-05
 Identities = 17/106 (16%), Positives = 18/106 (16%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P      P     P A         P  P                    P       E  
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEAL 433

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
                A  + P     P       PA A  PA A            
Sbjct: 434 AAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAA 479

Length = 700

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 4/118 (3%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKP----KEP 127
           S+    P+    PP  P+   +P+ P +     +  + +  +  + P+ P+ P     + 
Sbjct: 124 SLWGTAPKPEPQPPQAPESQPQPQTPAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQG 183

Query: 128 EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
             P++   P++    + P  P+ P+   E  +P    PAP+ APA  P P  +P  PP
Sbjct: 184 MPPRQAAFPQQGPPEQPPGYPQPPQGHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPP 241

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 19/109 (17%), Positives = 36/109 (33%), Gaps = 1/109 (0%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
           ++P  P      P   +  ++P     P+QP +        +        + +E +    
Sbjct: 398 QQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFA 457

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV-PCHPPV 186
           P+   +  +  +    +EP    P P    P   P P      P  PP+
Sbjct: 458 PQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPL 506

Length = 1355

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 91  PEKPKAPEKPKEPEKPKQPEKPKEP-----EKPKQPEKPKEPEKPKEPEKPKEPEKPKEP 145
           P++    +KPK+ +  K   +  E      ++ +Q EK K P+KPKE  +P  P  PK+ 
Sbjct: 9   PDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNPKKS 68

Query: 146 AKPKEPEKPKEPPKPSPP-----PPAPAPAPAPAPAPAPVPCHPP 185
           +KP E        KP+ P         +   + AP+        P
Sbjct: 69  SKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEP 113

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 27/112 (24%), Positives = 31/112 (27%), Gaps = 2/112 (1%)

Query: 78   PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKP-KQPEKPKEPEKPKEPEKP 136
            P +    P           P  P  PE          P  P     +   P  P  P  P
Sbjct: 2683 PRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPP 2742

Query: 137  KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
              P  P  P  P  P +P     P  P P  APA A  P     P    +  
Sbjct: 2743 AVPAGPATPGGPARPARPPTTAGPPAPAPPAAPA-AGPPRRLTRPAVASLSE 2793

Length = 3151

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 25/78 (32%), Positives = 36/78 (46%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
           K          +  KEP+     E+ KE E+ K+ +K K+ +  +EP+  K  E+ KE  
Sbjct: 82  KGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKR 141

Query: 147 KPKEPEKPKEPPKPSPPP 164
            PKE EK KE     P  
Sbjct: 142 PPKEKEKEKEKKVEEPRD 159

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 31/108 (28%), Positives = 38/108 (35%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A      P  PPP P                 P     P   +      +P +  +    
Sbjct: 671 AKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASA 730

Query: 134 EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
             P   +    P +P +P  P   P   PPPPAPAPA APA AP P P
Sbjct: 731 PSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSP 778

Length = 824

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 5/105 (4%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
               P   K      A          +  + P +      P     P+   EP       
Sbjct: 444 DGDAPVPAKAN----ARASADSRCDERDAQPPADSGSASAPASDAPPDAAFEPAPRAAAP 499

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
               PA   +   P    +   P  A  PAP  A  P P    P 
Sbjct: 500 SAATPAAVPDARAPAAASREDAPAAAAPPAPE-ARPPTPAAAAPA 543

Length = 830

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 23/105 (21%), Positives = 28/105 (26%), Gaps = 3/105 (2%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P    PP      P    A          + P    E     +    + P     P  P
Sbjct: 396 APAPAAPPAAPAAAPAAAAAARAVAAAPARRSP--APEALAAARQASARGPGGAPAP-AP 452

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
                P   A+P            +  P   APA APAPA    P
Sbjct: 453 APAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPP 497

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 20/108 (18%), Positives = 23/108 (21%), Gaps = 2/108 (1%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P   P          AP     P  P          +      P       E        
Sbjct: 381 PVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARA-VAAAPARRSPAPEALAAARQA 439

Query: 141 KPKEPAKPKEP-EKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
             + P     P   P   P  +  P A  P P  A A A      P  
Sbjct: 440 SARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 22/105 (20%), Positives = 27/105 (25%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P     P   P    +P A                  P     P     P   + P + 
Sbjct: 447 APAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEF 506

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
             P   +  A P        P   +  P       APAPA AP P
Sbjct: 507 ASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAP 551

Length = 700

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 32/128 (25%), Positives = 42/128 (32%), Gaps = 27/128 (21%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPE----KPKEPEKPKQPEKPKEPEKPKEPEKP 136
           P P  P      + +  +    P+   Q E    +P   E   Q  +P E +   EPE  
Sbjct: 436 PAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPV 495

Query: 137 KEPEKPKEP------------AKPKE-----------PEKPKEPPKPSPPPPAPAPAPAP 173
            E  KP  P            A+ +E           P K  EP K S   P+ A  P  
Sbjct: 496 VEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPV 555

Query: 174 APAPAPVP 181
             A A  P
Sbjct: 556 EAAAAVSP 563

Length = 1355

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 14/78 (17%), Positives = 15/78 (19%)

Query: 98  EKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEP 157
                 E             P     P   +      K         PAK   P      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 158 PKPSPPPPAPAPAPAPAP 175
           P    P P    A AP  
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/76 (18%), Positives = 16/76 (21%)

Query: 104 EKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPP 163
                 E             P     P   +      K         P K   P      
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 164 PPAPAPAPAPAPAPAP 179
           P  P+P P    A AP
Sbjct: 421 PTEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 17/109 (15%), Positives = 32/109 (29%), Gaps = 1/109 (0%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           +  + EPE P          +   AP     P +      P      + P  P      +
Sbjct: 362 AAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTSQ 421

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPK-EPPKPSPPPPAPAPAPAPAPAPAP 179
                ++ ++ +   K K+ E       +P         +  PAP+   
Sbjct: 422 LLAARQQLQRAQGATKAKKSEPAAASRARPVNSALERLASVRPAPSALE 470

Length = 647

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/76 (21%), Positives = 19/76 (25%)

Query: 110 EKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP 169
                 E             P     P   +      K         P K SPP P PA 
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 170 APAPAPAPAPVPCHPP 185
              P+P P     + P
Sbjct: 421 PTEPSPTPPANAANAP 436

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 44.1 bits (104), Expect = 3e-05
 Identities = 17/75 (22%), Positives = 19/75 (25%)

Query: 113 KEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPA 172
           K   +   P  P     P  P   K      + A P       E PK   P     P PA
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Query: 173 PAPAPAPVPCHPPVG 187
                      P  G
Sbjct: 71  SLWKLEDFVVEPQEG 85

Length = 475

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 26/102 (25%), Positives = 31/102 (30%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
           KP    +  AP + K P +P+       P                    P  P     PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 147 KPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
               P        P+  P A A APAP    AP     PV V
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRV 466

Length = 618

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 19/88 (21%), Positives = 25/88 (28%)

Query: 100 PKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPK 159
            + P  P     P+E  +P  P  P  P  P        P +      P        P  
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

Query: 160 PSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
            + P  +      PA A    P  PP  
Sbjct: 657 VAVPDASDGGDGWPAKAGGAAPAAPPPA 684

Length = 824

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 44.1 bits (104), Expect = 4e-05
 Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK-- 135
           P      P K   P+ P + +  K   +  Q E      +     KP+E   PK PEK  
Sbjct: 212 PGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAP 271

Query: 136 --PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
                 E+ K P    +  +     K SP   +P+P  A +P P   P   P  
Sbjct: 272 PIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPK-AESPKPLASPGKSPRD 324

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 43.7 bits (103), Expect = 4e-05
 Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 2/119 (1%)

Query: 68  GSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEP 127
            S K +  +   +  PP    K P K   P+ P   +  K   +  + E      +    
Sbjct: 196 NSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSA 255

Query: 128 EKPKEPEKPKEPEK-PKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAP-APAPAPVPCHP 184
            KP+E   PK PEK P      +E + P+  PK S    A   +P+  +P+P      P
Sbjct: 256 PKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASARKRSPSLLSPSPKAESPKP 314

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 44.2 bits (104), Expect = 4e-05
 Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 127 PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
           P +P E E P   E   EPA       P   P P  P PAP    A   A APV
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAP-AKTAAPAAAAPV 259

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 20/133 (15%), Positives = 28/133 (21%), Gaps = 1/133 (0%)

Query: 53  CSPEKIRDKLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKP 112
            +P             ++   +      P PP P   +P  P  P     P  P      
Sbjct: 78  EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPP-PPTPPPASPPPSPAPDLSE 136

Query: 113 KEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPA 172
                      P                      +   P    E    +P  P   P P+
Sbjct: 137 MLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPS 196

Query: 173 PAPAPAPVPCHPP 185
             PA A       
Sbjct: 197 TPPAAASPRPPRR 209

Length = 1352

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 28/104 (26%), Positives = 33/104 (31%), Gaps = 1/104 (0%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           E   P    P       P  P  P  PE P  P     P  P   +    P  P+ P  P
Sbjct: 175 EDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNP 234

Query: 137 KEPEKPKEPAKPKEPEKPKEP-PKPSPPPPAPAPAPAPAPAPAP 179
             P  P  P  P   + P     KP+PP  +  PAP        
Sbjct: 235 SPPPGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDD 278

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 12/63 (19%), Positives = 15/63 (23%)

Query: 111 KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA 170
                     P      +  K   +  +   P           P    KP  P PA  P 
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPP 178

Query: 171 PAP 173
           P P
Sbjct: 179 PTP 181

Length = 418

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 20/78 (25%), Gaps = 1/78 (1%)

Query: 102 EPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPS 161
                +             P     P   +    PK  +    P+ P     P  P    
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS-APKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 162 PPPPAPAPAPAPAPAPAP 179
           P  P+P P    A AP  
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 1/80 (1%)

Query: 101 KEPEKPKQPEKPKEPEKPKQPEKPKEP-EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPK 159
           +        + P  P+K   P  P  P  +P     P  P  P   A       P + P 
Sbjct: 513 QSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPA 572

Query: 160 PSPPPPAPAPAPAPAPAPAP 179
            S PPP     P P+P    
Sbjct: 573 DSSPPPPIPEEPTPSPTKDS 592

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 14/62 (22%), Positives = 18/62 (29%)

Query: 107 KQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPA 166
           K   +   P  P     P  P   K      +   P   A   E  K  +P +   P PA
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPA 70

Query: 167 PA 168
             
Sbjct: 71  SL 72

Length = 475

>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated

 Score = 43.4 bits (102), Expect = 5e-05
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 5/106 (4%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKP-KQPEKPK---EPEKPKQPEKPKEPEKPKEP 133
           P +P    P        +  +          +P + +   EP+KP+   K  EP+   + 
Sbjct: 124 PTEPATVAPVRNGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAK-TEPKPVAQT 182

Query: 134 EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
            K  EP  P    K         P + +   P    +PA   A   
Sbjct: 183 PKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPA 228

Length = 328

>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 6/80 (7%)

Query: 93  KPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPE 152
             +   KP E  + K  +     EKP++P    +PEKP E E   E   P+    P   +
Sbjct: 306 PHRRRRKPFEQPQGKDEKDL--EEKPEEP--GPDPEKPDEGEDDAEQSGPRGHPTPGNDD 361

Query: 153 --KPKEPPKPSPPPPAPAPA 170
             +P    +      +  PA
Sbjct: 362 EKEPDPQEEADGQGSSTDPA 381

Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 21/54 (38%), Positives = 25/54 (46%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           P  P  P P P EP KPK  EKPK   KP+Q  +     KP+     +E   P 
Sbjct: 93  PNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAAPT 146

Length = 226

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.1 bits (102), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 22/62 (35%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P        +   PEKPKA     EP    +P  P   + P+     K P  P     P
Sbjct: 128 APAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADP 187

Query: 137 KE 138
           +E
Sbjct: 188 RE 189

Length = 418

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 153 KPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           + +E   PSPP P P P P P P P P P   P
Sbjct: 914 RSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEP 946

Length = 1250

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 16/110 (14%), Positives = 29/110 (26%), Gaps = 6/110 (5%)

Query: 77  EPEKPKPPPPKP-----KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
            P  P P          ++ ++ +   K K+ E P    + +      +      P    
Sbjct: 410 APAVPLPETTSQLLAARQQLQRAQGATKAKKSE-PAAASRARPVNSALERLASVRPAPSA 468

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
             + P + E  +  A      K +    P     A      P  A     
Sbjct: 469 LEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKTPELAAKLAA 518

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 2/105 (1%)

Query: 83  PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
             PP+      P A    + P  P      +     +Q ++ +   K K+ E P    + 
Sbjct: 391 VAPPQAPAVPPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE-PAAASRA 449

Query: 143 KEPAKPKEPEKPKEP-PKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           +      E      P P      PA   A              PV
Sbjct: 450 RPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPV 494

Length = 647

>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 99  KPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
             +   KP +  + K+ +     EKP+EP    +PEKP E E   E + P+    P    
Sbjct: 306 PHRRRRKPFEQPQGKDEKDL--EEKPEEP--GPDPEKPDEGEDDAEQSGPRGHPTPGNDD 361

Query: 159 KPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCRECYEGRGG 199
           +  P P   A     +  PA       V    +    G  G
Sbjct: 362 EKEPDPQEEADGQGSSTDPAGDIFRIRVLAPPQARARGASG 402

Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.5 bits (103), Expect = 7e-05
 Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 111 KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA 170
           KP    +   P + K P +P+       P      A             P+ PP A  PA
Sbjct: 365 KPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPA 424

Query: 171 PAPAP---APAPVPCHPPVGVCCRE 192
           P  AP   APA  P   P  V    
Sbjct: 425 PVAAPAAAAPAAAPAAAPAAVALAP 449

Length = 618

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 43.5 bits (102), Expect = 7e-05
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 148 PKEPEKPKEPPKPSPPP-PAPAPAPAPAPAPAPV 180
           P  P  P   P P P P P P P P P PA  PV
Sbjct: 920 PPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPV 953

Length = 1250

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 11/114 (9%)

Query: 81   PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
              P PP P  P+       P  P       +P     P  P   +  + P  P +   P 
Sbjct: 2609 RGPAPPSPLPPDTH--APDPPPPSPSPAANEPDPHPPPTVPPPERPRDDPA-PGRVSRPR 2665

Query: 141  KPKEPAKPKEPEKPKEPPKPSPPPPAPA--------PAPAPAPAPAPVPCHPPV 186
            + +   +  +   P + P+     P           P P P P PAP       
Sbjct: 2666 RARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSAT 2719

Length = 3151

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 1/77 (1%)

Query: 99  KPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
              +   P Q   P     P  P+       P  P  P           P +      PP
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP-PTATQASSNAPAQIPADSSPP 577

Query: 159 KPSPPPPAPAPAPAPAP 175
            P P  P P+P    +P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 42.3 bits (100), Expect = 8e-05
 Identities = 27/63 (42%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 126 EPEKPKEPEKPKEPE-KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
           +P     P  P EPE  P EP KPK  EKPK  PKP        PAP P P P       
Sbjct: 86  DPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKP-QQKVEAPPAPKPEPKPVVEEKAA 144

Query: 185 PVG 187
           P G
Sbjct: 145 PTG 147

Length = 226

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 30/105 (28%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 78   PEKPKPPP---PKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE 134
            P++  PPP   P+P E   P    + + P+ P Q  +P+ P   +   +   P  P  P+
Sbjct: 2564 PDRSVPPPRPAPRPSE---PAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPD 2620

Query: 135  KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
                   P  P+ P   E    PP   PPP  P   PAP     P
Sbjct: 2621 THAPDPPPPSPS-PAANEPDPHPPPTVPPPERPRDDPAPGRVSRP 2664

Length = 3151

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.8 bits (101), Expect = 9e-05
 Identities = 26/102 (25%), Positives = 31/102 (30%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           +P    P  P    P  P  P  P++P  P     P  P   +    P  PE P  P  P
Sbjct: 178 DPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPP 237

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
             P  P  P   + P      P P      PAP         
Sbjct: 238 PGPAAPPPPPVQQVPPLSTAKPTPPSASATPAPIGGITLDDD 279

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 18/68 (26%), Positives = 19/68 (27%), Gaps = 1/68 (1%)

Query: 131 KEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP-APAPAPAPVPCHPPVGVC 189
                P      K      E  K   P    P    P P   A  P PAP    PP  V 
Sbjct: 124 PPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVA 183

Query: 190 CRECYEGR 197
             +  E R
Sbjct: 184 RADPRETR 191

Length = 418

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.9 bits (101), Expect = 9e-05
 Identities = 23/113 (20%), Positives = 28/113 (24%), Gaps = 1/113 (0%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A   P               P A   P + + P   E P E   P   +    P      
Sbjct: 465 AAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAE 524

Query: 134 EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             P       + A       P   P P     A  P  AP P  A     P +
Sbjct: 525 SIPDPATADPDDAFETLAPAPAAAPAP-RAAAATEPVVAPRPPRASASGLPDM 576

Length = 700

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 1/68 (1%)

Query: 71  KSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
           K  A      P  P   P  P   K      +   P       E  K  +P + ++P KP
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP-KP 69

Query: 131 KEPEKPKE 138
               K ++
Sbjct: 70  ASLWKLED 77

Length = 475

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 115 PEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAP- 173
             K K PE    P+  + P  P +PE P   A+P E   P   P P   PP    AP P 
Sbjct: 389 DVKKKAPEPDL-PQPDRHP-GPAKPEAPG--ARPAELPSPASAPTPEQQPPVARSAPLPP 444

Query: 174 APAPAPVP 181
           +P  +   
Sbjct: 445 SPQASAPR 452

Length = 620

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/102 (14%), Positives = 19/102 (18%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A    +    P P         AP  P     P     P        P            
Sbjct: 391 AAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPA 450

Query: 134 EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAP 175
              +   +         PE       P+P     A    P  
Sbjct: 451 PPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAARLTPTE 492

Length = 618

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
            +P   P    +PE+P       +     QP     P+  +Q  +P EP    +PE   E
Sbjct: 126 PQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHS-APQPAQQAFQPAEPVAAPQPEPVAE 184

Query: 139 PEKPKEPAKPKE 150
           P    +  K KE
Sbjct: 185 PAPVMDKPKRKE 196

Length = 333

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 5/68 (7%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
                    AP      +  K       PEKPK      EP    +P  P   + P+   
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEK-----TTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP 173

Query: 147 KPKEPEKP 154
             K P  P
Sbjct: 174 AAKPPPTP 181

Length = 418

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 20/124 (16%), Positives = 26/124 (20%), Gaps = 19/124 (15%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
               P     P+    P           P    +   P    +   P     P     P 
Sbjct: 476 SASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPP 535

Query: 141 KPKEPAKPKEP-------------------EKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
            P   A                        ++       + P  APA AP PA     V 
Sbjct: 536 TPAAAAPAARAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQ 595

Query: 182 CHPP 185
              P
Sbjct: 596 VPTP 599

Length = 830

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 15/75 (20%), Positives = 20/75 (26%)

Query: 93  KPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPE 152
                  P +   P     P  P+       P  P  P    +       + PA    P 
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPP 578

Query: 153 KPKEPPKPSPPPPAP 167
              E P PSP   + 
Sbjct: 579 PIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/77 (19%), Positives = 19/77 (24%)

Query: 97  PEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKE 156
           P                 P     P          + ++      P           P E
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 157 PPKPSPPPPAPAPAPAP 173
           P +PSP PPA A    P
Sbjct: 421 PTEPSPTPPANAANAPP 437

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           E   P PP P       P A       +           EKPK  +KP+   KPK P   
Sbjct: 15  EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPK-KDKPRRERKPK-PASL 72

Query: 137 KEPE 140
            + E
Sbjct: 73  WKLE 76

Length = 475

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 1/68 (1%)

Query: 89  KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKP 148
           K   +  AP  P     P  P   K      +   P       E  K  +P + ++P KP
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP-KP 69

Query: 149 KEPEKPKE 156
               K ++
Sbjct: 70  ASLWKLED 77

Length = 475

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 20/55 (36%)

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
           P  P        P  PA P     P  PP     P A  PAPAPAP  A  P   
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPAR 436

Length = 576

>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 89   KEPEKPK-APEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAK 147
             + E  K         E           E+       +   K K P   KE ++P     
Sbjct: 1419 NQEEALKVTKTNKLFIEFEDSIGNQLNAEEHTGNVGEEYVFKAKNPGHYKEGDQPIT--- 1475

Query: 148  PKEPEKPKEPPKPSPPPPAPAPAPAPAP 175
                 +P EPPKP P     +      P
Sbjct: 1476 ----FEPTEPPKPDPEKRLDSNNKIDLP 1499

Length = 1531

>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning]

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 19/124 (15%), Positives = 35/124 (28%), Gaps = 9/124 (7%)

Query: 71  KSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
                +  +   P   +  E  +     + +      Q + P                  
Sbjct: 61  VGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQIKIPVPQPPQISDPPAHPQPTQ 120

Query: 131 KEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAP---------APAPAPVP 181
              ++ + PE+ ++P  P+E   P+     +P P      PA             PAP  
Sbjct: 121 PALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQPAVQTVQPAVPEQQVQPEEVVEPAPEV 180

Query: 182 CHPP 185
             PP
Sbjct: 181 KRPP 184

Length = 324

>gnl|CDD|240420 PTZ00441, PTZ00441, sporozoite surface protein 2 (SSP2); Provisional

 Score = 42.3 bits (99), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 4/92 (4%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
           P++    PP P         E   + E P  P  P  PE+     +    E P+  + P 
Sbjct: 355 PDES-NVPPNPPNVPGGSNSEFSSDVENPPNPPNPDIPEQEPNIPEDSNKEVPE--DVPM 411

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP 169
           EPE  ++     EP+KP+        P  P P
Sbjct: 412 EPEDDRD-NNFNEPKKPENKGDGQNEPVIPKP 442

Length = 576

>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 1/83 (1%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A+ E E PK  P   +E  KP       +    K+P +    +      +   PE  KE 
Sbjct: 50  AVDEDETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTN-SQDALLQAENALPEWKKEL 108

Query: 134 EKPKEPEKPKEPAKPKEPEKPKE 156
           EKP EP++ +  A  +     KE
Sbjct: 109 EKPSEPKEEEPKAAAESKVVQKE 131

Length = 424

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 20/73 (27%)

Query: 115 PEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPA 174
                  E P  P     PE+   P  P  PA P  P        P+    APAP  A  
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAP 650

Query: 175 PAPAPVPCHPPVG 187
                    P   
Sbjct: 651 EHHPKHVAVPDAS 663

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 25/117 (21%), Positives = 31/117 (26%)

Query: 65  KGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKP 124
            G+G         P  P P P          A      P     P   +  +   QP + 
Sbjct: 665 GGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQA 724

Query: 125 KEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
            +      P        P EP  P +P      P P P P   A   A  P   P  
Sbjct: 725 AQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSE 781

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 21/101 (20%), Positives = 29/101 (28%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P  P           AP     P   +  +   +P +  Q      P        P EP+
Sbjct: 687 PAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPD 746

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
            P +PA       P   P P+  P A  P   P+       
Sbjct: 747 DPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAE 787

Length = 824

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 19/90 (21%), Positives = 24/90 (26%), Gaps = 11/90 (12%)

Query: 75  ILEPEKPK--PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEK--- 129
           + E           +   PE  +A   P   E    PE P        P   +E E    
Sbjct: 39  VAEGAAGPVAKAAEQMAAPEAAEAAPLPAAAESIASPEVPPPV----PPAPAQEGEAPAA 94

Query: 130 --PKEPEKPKEPEKPKEPAKPKEPEKPKEP 157
             P     P     P EP +P     P   
Sbjct: 95  EQPSAVPAPSAAPAPAEPVEPSLAANPFAA 124

Length = 931

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 21/80 (26%), Positives = 23/80 (28%), Gaps = 1/80 (1%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
           P    +P KP           P    +PK       P K    E    PP   P P AP 
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRE-TATPPPVPPRPVAPP 420

Query: 169 PAPAPAPAPAPVPCHPPVGV 188
               P  AP       PV  
Sbjct: 421 VPHTPESAPKLTRAAIPVDE 440

Length = 585

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 21/104 (20%), Positives = 26/104 (25%), Gaps = 1/104 (0%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
                  P P         A   P     P   + P   E P +   P   +    P   
Sbjct: 462 ARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGW 521

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPP-PAPAPAPAPAPAPAP 179
                P       +       P P+  P P  A A  P  AP P
Sbjct: 522 VAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP 565

Length = 700

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 26/99 (26%), Positives = 54/99 (54%), Gaps = 11/99 (11%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           +P++P  P  + ++P++P AP    + ++P+QP  P    + +QP++P  P+   + ++P
Sbjct: 754 QPQQPVAPQQQYQQPQQPVAP--QPQYQQPQQPVAP--QPQYQQPQQPVAPQ--PQYQQP 807

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAP 175
           ++P  P+      + ++P++P  P P    P    AP P
Sbjct: 808 QQPVAPQP-----QYQQPQQPVAPQPQYQQPQQPVAPQP 841

Length = 1355

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 16/79 (20%), Gaps = 1/79 (1%)

Query: 86  PKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEP 145
           P     E   A         P     P   +      K         P K   P  P   
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPI-PVPA 419

Query: 146 AKPKEPEKPKEPPKPSPPP 164
              +    P      +PP 
Sbjct: 420 EPTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 19/77 (24%), Positives = 23/77 (29%)

Query: 71  KSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
                  P  P PP P+P     P  P  P           P +      P  P   E  
Sbjct: 526 PPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPPIPEEPT 585

Query: 131 KEPEKPKEPEKPKEPAK 147
             P K   PE+  + AK
Sbjct: 586 PSPTKDSSPEEIDKAAK 602

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
            P  P P+P+ P  P++       +    P     P +      P      + P  P   
Sbjct: 360 HPAAPLPEPEVP--PQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
              +  A  ++ ++ +   K     PA A    P  + 
Sbjct: 418 TTSQLLAARQQLQRAQGATKAKKSEPAAASRARPVNSA 455

Length = 647

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 1/66 (1%)

Query: 95  KAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKP 154
           K   +   P  P     P  P   K      +   P       E  K  +P + ++P KP
Sbjct: 11  KGEAEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP-KP 69

Query: 155 KEPPKP 160
               K 
Sbjct: 70  ASLWKL 75

Length = 475

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 18/91 (19%), Positives = 19/91 (20%)

Query: 95  KAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKP 154
            A     EP     P    E    +    P        P  P     P  P        P
Sbjct: 59  AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPP 118

Query: 155 KEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
             PP  SPPP                   P 
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPA 149

Length = 1352

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 27/110 (24%), Positives = 34/110 (30%), Gaps = 8/110 (7%)

Query: 73  IAILEPEK-PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           +AILE        PP     EK + P             +P      ++  K    +   
Sbjct: 71  LAILEEGNDATAAPPAKSGEEKEETPAASAAAAPTAAANRPSLSPAARRLAKEHGIDLSA 130

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA-PAPAPAPAPV 180
            P         KE    K+ E P      S   PAPA A  APA    P 
Sbjct: 131 VPGTGVTGRVTKEDI-IKKTEAP-----ASAQQPAPAAAAKAPANFTRPE 174

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 16/42 (38%)

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           E     A   +   P  P        APAPA A   APA VP
Sbjct: 46  EDLGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVP 87

Length = 767

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 41.7 bits (98), Expect = 2e-04
 Identities = 21/98 (21%), Positives = 35/98 (35%), Gaps = 1/98 (1%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
               P    P+ +   +P    +P+  ++ +  + P+      + ++   PE P      
Sbjct: 179 PYASPASYAPEQERDREPYDAGRPEYDQRRRDYDHPRPDWDRPRRDRTDRPEPPPGAGHV 238

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPA 174
                P  P +   P  P  P  P P    PAPAP P 
Sbjct: 239 HR-GGPGPPERDDAPVVPIRPSAPGPLAAQPAPAPGPG 275

Length = 617

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 21/77 (27%)

Query: 112 PKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
            + P  P     P+E  +P  P  P  P  P        P +    P P    P   P  
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

Query: 172 APAPAPAPVPCHPPVGV 188
              P  +      P   
Sbjct: 657 VAVPDASDGGDGWPAKA 673

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 14/80 (17%), Positives = 19/80 (23%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
           P  P     P++  +P  P  P  P  P        PA+      P        P     
Sbjct: 600 PPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAV 659

Query: 169 PAPAPAPAPAPVPCHPPVGV 188
           P  +      P         
Sbjct: 660 PDASDGGDGWPAKAGGAAPA 679

Length = 824

>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 33/101 (32%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 75  ILEPEKPKP-----PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEK 129
           I EP K  P     P PKPK   KPK     K  E+PK+  KP EP +P  P +   P +
Sbjct: 81  IPEPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP-RPASPFENTAPAR 139

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA 170
           P          KP           P+   +  P  PA A A
Sbjct: 140 PTSSTATAAASKP----VTSVSSGPRALSRNQPQYPARAQA 176

Length = 246

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 78  PEKPKPPPPKPK--------EPEKPKAPEKPKEPEKPKQPEKPKEPEK-PKQPEKPKEPE 128
           PE   PP   P+          +    P+  +  ++P  P+    P+     P+  ++  
Sbjct: 109 PEAQVPPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAF 168

Query: 129 KPKEPEKPKEPEKPKEPAKPKEPEKPKE 156
           +P EP    +PE   EPA   +  K KE
Sbjct: 169 QPAEPVAAPQPEPVAEPAPVMDKPKRKE 196

Length = 333

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 19/74 (25%), Positives = 21/74 (28%)

Query: 112 PKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
             E      P  P     P  P  P +P  PK       P  P     P  P PA    P
Sbjct: 365 ISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPTEP 424

Query: 172 APAPAPAPVPCHPP 185
           +P P        P 
Sbjct: 425 SPTPPANAANAPPS 438

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 12/78 (15%), Positives = 17/78 (21%), Gaps = 1/78 (1%)

Query: 90  EPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPK 149
                +             P     P   +    PK  +    P  P     P  P   +
Sbjct: 362 SAFISEIANASAPANPTPAPNPSPPPAPIQPS-APKTKQAATTPSPPPAKASPPIPVPAE 420

Query: 150 EPEKPKEPPKPSPPPPAP 167
             E    PP  +   P  
Sbjct: 421 PTEPSPTPPANAANAPPS 438

Length = 620

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 14/64 (21%), Positives = 23/64 (35%)

Query: 118 PKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
           P +P + + P   +   +P      + P    +P  P   P  +  P A AP  +    P
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAAPVSSGDSGP 266

Query: 178 APVP 181
              P
Sbjct: 267 YVTP 270

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 18/115 (15%), Positives = 21/115 (18%), Gaps = 3/115 (2%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQP--EKPKEPEKPKQPEKPKEPEKPKEPEK 135
                     P       AP  P     P  P    P  P     P  P     P   E 
Sbjct: 78  EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPPSPAPDLSEM 137

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPK-PSPPPPAPAPAPAPAPAPAPVPCHPPVGVC 189
            +    P  P     P     P    S    +   A   +               
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAE 192

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 1/63 (1%)

Query: 124 PKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAP-APAPVPC 182
           P  P        P  P  P   A P  P      P  + P PAPAP  A AP A +  P 
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPA 441

Query: 183 HPP 185
              
Sbjct: 442 AAA 444

Length = 576

>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 89   KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKP 148
               E   +       E+       +   K K P   KE ++P    +P EP KP +P K 
Sbjct: 1432 LFIEFEDSIGNQLNAEEHTGNVGEEYVFKAKNPGHYKEGDQPIT-FEPTEPPKP-DPEKR 1489

Query: 149  KEPEKPKEPPK 159
             +     + P 
Sbjct: 1490 LDSNNKIDLPS 1500

Length = 1531

>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning]

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 5/95 (5%)

Query: 67  EGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKE-----PEKPKQP 121
           E +   I I  P+ P+   P         A ++ + PE+ +QP  P+E     P     P
Sbjct: 93  EYASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAP 152

Query: 122 EKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKE 156
           +   +  +P  PE+  +PE+  EPA   +    K+
Sbjct: 153 QPAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKD 187

Length = 324

>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 22/102 (21%), Positives = 29/102 (28%), Gaps = 5/102 (4%)

Query: 85  PPKPKEPEKPKAPEKPKEP---EKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE-PE 140
             +P    KP     P EP    +         P         +    PK P KP+    
Sbjct: 102 MSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPRAKSP 161

Query: 141 KPKEPAKPKEPEK-PKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           +P   A PK  E    +  K +   P P       PA     
Sbjct: 162 RPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTK 203

Length = 209

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 77   EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            +P+ P PP P+P+ P  P+    P  P +P+ P  P              P+       P
Sbjct: 2910 QPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVP 2969

Query: 137  KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPA 172
                 P+       P   +E P  S PP        
Sbjct: 2970 GRVAVPRFRVPQPAP--SREAPASSTPPLTGHSLSR 3003

Length = 3151

>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

 Score = 40.2 bits (94), Expect = 4e-04
 Identities = 29/103 (28%), Positives = 37/103 (35%), Gaps = 1/103 (0%)

Query: 77  EPEKPKPPPPKPKE-PEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
               P+P PPKPKE P+  K P+KPK   KPK   KPK   +PK  + P +         
Sbjct: 73  PETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAAP 132

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
            +    P   +       P                  PA A A
Sbjct: 133 NQPARPPSAASASGAATGPSASYLSGLRRAIRRAPRYPAQARA 175

Length = 244

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 23/125 (18%), Positives = 32/125 (25%), Gaps = 11/125 (8%)

Query: 71  KSIAILEPEKPKPPPPKP-----------KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPK 119
           K+ A     + + PP  P                   P K             ++ + P 
Sbjct: 413 KAAAAAAATRAEAPPAAPAPPATADRGDDAADGDAPVPAKANARASADSRCDERDAQPPA 472

Query: 120 QPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
                  P     P+   EP           P    +   P+      APA A  PAP  
Sbjct: 473 DSGSASAPASDAPPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEA 532

Query: 180 VPCHP 184
            P  P
Sbjct: 533 RPPTP 537

Length = 830

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 21/98 (21%), Positives = 23/98 (23%), Gaps = 2/98 (2%)

Query: 91  PEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKE 150
           P    A    +       P                 P               + PA   E
Sbjct: 374 PATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAP--E 431

Query: 151 PEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
                       P  APAPAPAPA APA        G 
Sbjct: 432 ALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGP 469

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 22/102 (21%), Positives = 24/102 (23%), Gaps = 6/102 (5%)

Query: 83  PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
            P      P    AP           P     P  P          +      P      
Sbjct: 373 GPATAAAAPVAQPAP--AAAAPAAAAPAPAAPPAAPAAAPAAAAAARA-VAAAPARRSPA 429

Query: 143 KEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPA---PAPAPVP 181
            E          + P     P PAPA APA A    A  P P
Sbjct: 430 PEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRP 471

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 1/71 (1%)

Query: 111 KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPA 170
              +   P Q   P     P  P+       P  P  P           P+  P   +P 
Sbjct: 519 NTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPP-PTATQASSNAPAQIPADSSPP 577

Query: 171 PAPAPAPAPVP 181
           P     P P P
Sbjct: 578 PPIPEEPTPSP 588

Length = 620

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 6/68 (8%)

Query: 83  PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
            P P P  P        P  P   K      +   P       E  K  +P + ++P KP
Sbjct: 16  QPAPAPPSP-----AAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKP-KP 69

Query: 143 KEPAKPKE 150
               K ++
Sbjct: 70  ASLWKLED 77

Length = 475

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 96  APEKPKEPEKPKQPE---KPKEPEKPKQP-EKPKEPEKPKEPEKPKEPEKPKEPAKPK-E 150
           A +  K+     QP    +   P  P  P + P  P  P +   P  P++  E AK +  
Sbjct: 45  ALQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEEAKDQPR 104

Query: 151 PEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
             +  E    S        A     A  
Sbjct: 105 RLRAAELAATSGSRVESDRAVGRVRAAL 132

Length = 360

>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit Tim54

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 29/99 (29%), Positives = 35/99 (35%), Gaps = 6/99 (6%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P  PP  P+      APE   E E     E P EP +    E  +   +  E    +E  
Sbjct: 194 PLDPPEPPEPTVDEAAPET--EVEATPAAESPAEPAE----ETAETTPEETEDAPEEENN 247

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
           KP +P  PK    P E P    PP  P         P P
Sbjct: 248 KPVKPPVPKPYISPDEYPSAPLPPELPQLLQPSLVIPFP 286

Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane. Length = 377

>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 26/143 (18%), Positives = 28/143 (19%), Gaps = 41/143 (28%)

Query: 84  PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK 143
           PP    EP    A      P        P    +   P     P     P  P       
Sbjct: 485 PPDAAFEPAPRAAAPSAATPAAVPDARAPAAASREDAPAAAAPPAPEARPPTPAAAAPAA 544

Query: 144 E--------------------------PAKPKEPEKPKEPPKPSPPPPA-PAPAP----- 171
                                       A  K    P   PKP+ P  A   P P     
Sbjct: 545 RAGGAAAALDVLRNAGMRVSSDRGARAAAAAKPAAAPAAAPKPAAPRVAVQVPTPRARAA 604

Query: 172 ---------APAPAPAPVPCHPP 185
                    A A   A     PP
Sbjct: 605 TGDAPPNGAARAEQAAESRGAPP 627

Length = 830

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 20/86 (23%), Positives = 28/86 (32%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
            +  P  P     E  +A +       P     P  P +P+         KP E  KPK 
Sbjct: 60  TQALPTQPPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKP 119

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPP 164
             + K  A P    +PK   +    P
Sbjct: 120 KPQQKVEAPPAPKPEPKPVVEEKAAP 145

Length = 226

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 2/87 (2%)

Query: 92  EKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEP 151
           E   A E+  E +  ++       + P   +   E       E      +  +  +P+ P
Sbjct: 358 ESTPAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVP 417

Query: 152 EKPKEPPKPSPPPPAPAPAPAPAPAPA 178
           E  K  P P P  P       P   PA
Sbjct: 418 E--KAAPIPDPAKPDELAVAGPGDDPA 442

Length = 460

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 26/120 (21%), Positives = 36/120 (30%)

Query: 67  EGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKE 126
           E + +    L    P          ++      P    +   P +P        P +  E
Sbjct: 793 EAAFRRPGRLRRSGPAADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSE 852

Query: 127 PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             K K               +P+ PE    P   +PP  A A  PA APAP P P     
Sbjct: 853 SSKSKPAAAGGRARGKNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPRVK 912

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 24/108 (22%), Positives = 28/108 (25%), Gaps = 3/108 (2%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEP--EKPKEPEKPKE 138
            +  PP    P         +    P        P  P +   P  P    P  P     
Sbjct: 63  DRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPP 122

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPA-PAPAPAPAPAPAPVPCHPP 185
           P  P     P   E  +    P PPP A P  A A   A A       
Sbjct: 123 PASPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSR 170

Length = 1352

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.3 bits (94), Expect = 6e-04
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
             K K PE    P+  + P  P +PE P    +P E   P     P++ P  +   P P 
Sbjct: 389 DVKKKAPEPDL-PQPDRHP-GPAKPEAPGA--RPAELPSPASAPTPEQQPPVARSAPLP- 443

Query: 169 PAPAPAPAPA 178
           P+P  +    
Sbjct: 444 PSPQASAPRN 453

Length = 620

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 1/64 (1%)

Query: 118 PKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
           P  P        P  P  P     P  P            P P+P PPA A  PA +  P
Sbjct: 382 PAPPSAAWGAPTPAAPAAPPPAAAPPVPP-AAPARPAAARPAPAPAPPAAAAPPARSADP 440

Query: 178 APVP 181
           A   
Sbjct: 441 AAAA 444

Length = 576

>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome partitioning]

 Score = 39.9 bits (93), Expect = 6e-04
 Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 3/147 (2%)

Query: 22  KKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPEKP 81
            K  K         +   DE    VR+     +P+  ++    +     +        + 
Sbjct: 40  LKRMKSKRDDDPYDEVADDEGVGEVRVVRKNEAPQFTQEHEAARQSPQHQYQPEYASAQI 99

Query: 82  KPPPPKPKEPEKPKAPEKPKEPEK--PKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
           K P P+P +   P A  +P +P     + PE+ ++P  P Q     +P     P+   + 
Sbjct: 100 KIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLP-QEAPAPQPVHSAAPQPAVQT 158

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPA 166
            +P  P +  +PE+  EP      PP 
Sbjct: 159 VQPAVPEQQVQPEEVVEPAPEVKRPPR 185

Length = 324

>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 18/110 (16%), Positives = 28/110 (25%), Gaps = 11/110 (10%)

Query: 66  GEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK 125
            EG+  + A       +                            +P      ++  K  
Sbjct: 75  EEGNDATAAPPAKSGEEKEETPA----------ASAAAAPTAAANRPSLSPAARRLAKEH 124

Query: 126 EPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAP 175
             +    P         KE    K+ E P    +P+P   A APA    P
Sbjct: 125 GIDLSAVPGTGVTGRVTKEDI-IKKTEAPASAQQPAPAAAAKAPANFTRP 173

This model describes the TCA cycle 2-oxoglutarate system E2 component, dihydrolipoamide succinyltransferase. It is closely related to the pyruvate dehydrogenase E2 component, dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase [Energy metabolism, TCA cycle]. Length = 403

>gnl|CDD|237605 PRK14086, dnaA, chromosomal replication initiation protein; Provisional

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 6/111 (5%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           EP  P P   +  EPE P+   +P E          + P  P+Q + P         ++ 
Sbjct: 94  EPAPPPPHARRTSEPELPRPGRRPYE-GYGGPRADDRPPGLPRQDQLPTARPAYPAYQQR 152

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
            EP      A     ++ +    P  P  +PA     + AP       P  
Sbjct: 153 PEPGAWPRAADDYGWQQQRLGFPPRAPYASPA-----SYAPEQERDREPYD 198

Length = 617

>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045)

 Score = 39.8 bits (93), Expect = 7e-04
 Identities = 32/120 (26%), Positives = 44/120 (36%), Gaps = 6/120 (5%)

Query: 68  GSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEP 127
           G     +  + EK KP  P   + E      +     KP++   PK PEK   P      
Sbjct: 223 GIPDLPSSRDSEKTKPEKP---QQETSSMDTEKSSAPKPRETLDPKSPEK--APPIDTTE 277

Query: 128 EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPP-PAPAPAPAPAPAPAPVPCHPPV 186
           E+ K PE   +  +     K         P   SP P  +P  +P    +P P P  PPV
Sbjct: 278 EELKSPEASPKESEEASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPPV 337

This presumed domain is functionally uncharacterized. This domain family is found in bacteria and eukaryotes, and is typically between 384 and 430 amino acids in length. Length = 414

>gnl|CDD|233870 TIGR02442, Cob-chelat-sub, cobaltochelatase subunit

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 4/95 (4%)

Query: 76  LEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE- 134
           L   + + P  +P+  ++    EKP+EP     PEKP E E   +   P+    P   + 
Sbjct: 305 LPHRRRRKPFEQPQGKDEKDLEEKPEEPGPD--PEKPDEGEDDAEQSGPRGHPTPGNDDE 362

Query: 135 -KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
            +P   E+        +P       +   PP A A
Sbjct: 363 KEPDPQEEADGQGSSTDPAGDIFRIRVLAPPQARA 397

Cobaltochelatase is responsible for the insertion of cobalt into the corrin ring of coenzyme B12 during its biosynthesis. Two versions have been well described. CbiK/CbiX is a monomeric, anaerobic version which acts early in the biosynthesis (pfam06180). CobNST is a trimeric, ATP-dependent, aerobic version which acts late in the biosynthesis (TIGR02257/TIGR01650/TIGR01651). A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. Length = 633

>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 1/89 (1%)

Query: 83  PPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKP 142
           P   +  E +  +        + P   +   E       E      +  +  +P+ PEK 
Sbjct: 361 PAVEETSEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAALASEAHDETEPEVPEKA 420

Query: 143 KEPAKPKEPEKP-KEPPKPSPPPPAPAPA 170
                P +P++     P   P  P     
Sbjct: 421 APIPDPAKPDELAVAGPGDDPAEPDGIRR 449

Length = 460

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 40.3 bits (94), Expect = 7e-04
 Identities = 18/76 (23%), Positives = 19/76 (25%)

Query: 108 QPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP 167
           QP  P              P     P                 P +P  PP   P PP P
Sbjct: 187 QPPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIP 246

Query: 168 APAPAPAPAPAPVPCH 183
                 AP P P P  
Sbjct: 247 PVIQYVAPPPVPPPQP 262

Length = 582

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 24/81 (29%), Positives = 28/81 (34%), Gaps = 1/81 (1%)

Query: 121 PEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
                  E P  P     PE+   PA P  P  P   P P+    APA A A        
Sbjct: 591 APGAAGGEGPPAPASSGPPEEAARPAAPAAPAAP-AAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 181 PCHPPVGVCCRECYEGRGGGP 201
           P H P  V   +  +G  G P
Sbjct: 650 PEHHPKHVAVPDASDGGDGWP 670

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 4/100 (4%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
                    K  E   P A  + +      +      P      + P + E  +      
Sbjct: 430 QRAQGATKAKKSE---PAAASRARPVNSALERLASVRPAPSALEKAPAKKEAYRWKATNP 486

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
              K +  A PK  +K  E  K +P   A   A A    P
Sbjct: 487 VEVKKEPVATPKALKKALEHEK-TPELAAKLAAEAIERDP 525

Length = 647

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 19/78 (24%), Positives = 21/78 (26%), Gaps = 2/78 (2%)

Query: 103 PEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSP 162
           P  P              P     P                 PA+P  P  P   P P  
Sbjct: 188 PPPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAP--PASIPAPPI 245

Query: 163 PPPAPAPAPAPAPAPAPV 180
           PP     AP P P P P+
Sbjct: 246 PPVIQYVAPPPVPPPQPI 263

Length = 582

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 26/111 (23%), Positives = 37/111 (33%), Gaps = 17/111 (15%)

Query: 70  IKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEK 129
           ++ I ++  +    P P      K KAPE         QP++   P KP+ P        
Sbjct: 368 LRLIELVRNDGGVAPSPAGSPDVKKKAPEPD-----LPQPDRHPGPAKPEAPGA------ 416

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
                +P E   P     P E + P     P PP P  +     A     V
Sbjct: 417 -----RPAELPSPASAPTP-EQQPPVARSAPLPPSPQASAPRNVASGKPGV 461

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 26/119 (21%), Positives = 30/119 (25%), Gaps = 16/119 (13%)

Query: 83   PPPPKPKEPEKPKAPEKPKEP--EKPKQPEKPKEPEKPKQPEKPKEPEKPKEP------- 133
            P P  P +P           P    P  P  P    +P  P  P  P  P  P       
Sbjct: 2799 PSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAP 2858

Query: 134  ------EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPP-PAPAPAPAPAPAPAPVPCHPP 185
                    P      K  A  + P +    P  S        P   P   P P    PP
Sbjct: 2859 GGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPP 2917

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 22/111 (19%), Positives = 31/111 (27%), Gaps = 6/111 (5%)

Query: 69  SIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPE 128
           S++ ++       +   P  K      A      P         +       P     P 
Sbjct: 364 SLEDLSAGRHHPKRASLPTRKRRSARHA----ATPFARGPGGDDQTRPAAPVPASVPTPA 419

Query: 129 KPKEPE-KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
               P   P  P  P   A+P   + P  PP+  PP PA        P  A
Sbjct: 420 PTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAPA-TEPAPDDPDDA 469

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 23/102 (22%), Positives = 31/102 (30%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
           P  P    P    P     P   +  +   QP +  +      P        P EP+ P 
Sbjct: 690 PAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPP 749

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
           +P        P     P   P  +PPP  P+     A   AP
Sbjct: 750 DPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAP 791

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 25/107 (23%), Positives = 26/107 (24%), Gaps = 3/107 (2%)

Query: 84  PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK 143
                       AP                 P     P     P+    P     P  P 
Sbjct: 386 GVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPA 445

Query: 144 EPAKPKEPEKPKEPPKPSPPP---PAPAPAPAPAPAPAPVPCHPPVG 187
             A       P     PS  P   PA AP P  APAPAP     P  
Sbjct: 446 GNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAA 492

Length = 824

>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPK-EPEKPKQPEKPKEPEKPKEPEKP 136
           P +  P P +P      +   +P+  +  +QP  P+  P        P+  ++  +P +P
Sbjct: 114 PPQHAPRPAQPAPQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQQAFQPAEP 173

Query: 137 KEPEKPKEPAKPKEPEKPKEPPK 159
               +P EP     P   K   K
Sbjct: 174 VAAPQP-EPVAEPAPVMDKPKRK 195

Length = 333

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 11/55 (20%), Positives = 11/55 (20%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKE 132
           P    P  P P  P        PK          P  P        P       E
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 145 PAKPKEPEKPKEPPKPSPPP-PAPAPAPAPAPAP 177
           P  P +P+ P   P P+P P P P P P PA  P
Sbjct: 920 PPSPPDPD-PTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 115  PEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
            PEK   P +  EP+ PK P +  +  KPK+   PK+ + P  PP
Sbjct: 1010 PEKTPPPPE-HEPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTPP 1052

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111

>gnl|CDD|236669 PRK10263, PRK10263, DNA translocase FtsK; Provisional

 Score = 40.1 bits (93), Expect = 0.001
 Identities = 27/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPE----K 129
           A    ++P   P   +  ++P     P++P       + +E +    P+   + E    +
Sbjct: 412 AEQPAQQPYYAPAPEQPAQQPYYAPAPEQPV-AGNAWQAEEQQSTFAPQSTYQTEQTYQQ 470

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPP-----------------------PA 166
           P   E   +  +P E     EPE   E  KP+ PP                       P 
Sbjct: 471 PAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPI 530

Query: 167 PAPAPAPAPAPAPVPCHPPVGV 188
           P P   P P  + +       V
Sbjct: 531 PEPVKEPEPIKSSLKAPSVAAV 552

Length = 1355

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 18/77 (23%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 69  SIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPE 128
           + K+    +   P P P  P    +P A   P  P  P           P Q      P 
Sbjct: 520 TAKTPPPPQKSPPPPAPTPP--LPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPP 577

Query: 129 KPKEPEKPKEPEKPKEP 145
            P   E    P K   P
Sbjct: 578 PPIPEEPTPSPTKDSSP 594

Length = 620

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 8/95 (8%)

Query: 75  ILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE 134
            L  E          +   P     P     P  P+       P  P  P    +     
Sbjct: 507 KLNLESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNA 566

Query: 135 KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP 169
             + P              P  P +P+P P   + 
Sbjct: 567 PAQIP--------ADSSPPPPIPEEPTPSPTKDSS 593

Length = 620

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 123 KPKEPEKPKEPEKPKEPEKP-KEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
            P  P    EPE P +   P         P     PP+    PP PA AP  APA     
Sbjct: 360 HPAAPLP--EPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPE 417

Query: 182 CHPPV 186
               +
Sbjct: 418 TTSQL 422

Length = 647

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 2/53 (3%)

Query: 96  APEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKP 148
           AP +P E E P   E   EP        P     P  P     P K   PA  
Sbjct: 206 APAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDP--PAPAPAPAKTAAPAAA 256

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 5/69 (7%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
           P +P E E P   E   EP        P     P     P     P +   P+   P  +
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDP-----PAPAPAPAKTAAPAAAAPVSS 261

Query: 169 PAPAPAPAP 177
               P   P
Sbjct: 262 GDSGPYVTP 270

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 18/53 (33%), Positives = 21/53 (39%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKP 130
                P  P+P   E PK     K   KPK  +K + P  PK   KP   EK 
Sbjct: 91  APPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKA 143

Length = 226

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/62 (30%), Positives = 26/62 (41%)

Query: 76  LEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
           L+P    PP    +    P  P KPK  EKPK   KP++  +     KP+     +E   
Sbjct: 85  LDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPVVEEKAA 144

Query: 136 PK 137
           P 
Sbjct: 145 PT 146

Length = 226

>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.5 bits (92), Expect = 0.001
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 127 PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP---APAPAPAPVPCH 183
             K K PE    P+  + P  P +PE P   P    P PA AP P    P    AP+P  
Sbjct: 389 DVKKKAPEPDL-PQPDRHPG-PAKPEAPGARPA-ELPSPASAPTPEQQPPVARSAPLPPS 445

Query: 184 P 184
           P
Sbjct: 446 P 446

Length = 620

>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 87   KPKEPEKPKAPEKPKEPEKPKQPE---KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK 143
              +  +        +E       E   K K P   K+ ++P    +P EP KP +PEK  
Sbjct: 1433 FIEFEDSIGNQLNAEEHTGNVGEEYVFKAKNPGHYKEGDQPIT-FEPTEPPKP-DPEKRL 1490

Query: 144  EPAKPKE 150
            +     +
Sbjct: 1491 DSNNKID 1497

Length = 1531

>gnl|CDD|227268 COG4932, COG4932, Predicted outer membrane protein [Cell envelope biogenesis, outer membrane]

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 111  KPKEPEKPKQPEKPKEPEKPKEPE---KPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP 167
              +  +        +E       E   K K P   KE  +P    +P EPPKP P     
Sbjct: 1433 FIEFEDSIGNQLNAEEHTGNVGEEYVFKAKNPGHYKEGDQPIT-FEPTEPPKPDPE--KR 1489

Query: 168  APAPAPAPAP 177
              +      P
Sbjct: 1490 LDSNNKIDLP 1499

Length = 1531

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 2/80 (2%)

Query: 99  KPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
               P + ++  +         P        P    +PK+    +E     +     EP 
Sbjct: 197 DLLPPGQAREQAQ-GAKSATAAPATV-PQAAPLPQAQPKKAATEEELIADAKKAATGEPA 254

Query: 159 KPSPPPPAPAPAPAPAPAPA 178
             +     P P P      A
Sbjct: 255 ANAAKAAKPEPMPDDQQKEA 274

Length = 423

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 13/73 (17%), Positives = 18/73 (24%), Gaps = 1/73 (1%)

Query: 107 KQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPA 166
             P      +          P        P    +PK+ A  +E     +      P   
Sbjct: 198 LLPPGQAREQAQGAKSATAAPATV-PQAAPLPQAQPKKAATEEELIADAKKAATGEPAAN 256

Query: 167 PAPAPAPAPAPAP 179
            A A  P P P  
Sbjct: 257 AAKAAKPEPMPDD 269

Length = 423

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 142 PKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           P         +      +P+    APAP P P PA  P P    
Sbjct: 277 PAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNP-PATPPEPPARR 319

Length = 656

>gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.4 bits (92), Expect = 0.001
 Identities = 20/71 (28%), Positives = 23/71 (32%), Gaps = 1/71 (1%)

Query: 112 PKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAP-A 170
              P    Q     E E       P           P    +P+ PP P P   A AP  
Sbjct: 357 APAPADLTQRLNRLEKEVRSLRSAPTAAATAAGAPLPDFDPRPRGPPAPEPARSAEAPPL 416

Query: 171 PAPAPAPAPVP 181
            APA APA + 
Sbjct: 417 VAPAAAPAGLA 427

Length = 504

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/44 (31%), Positives = 15/44 (34%)

Query: 144 EPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
             A P     P      +    APAPAPA A APA         
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAA 238

Length = 547

>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 32/115 (27%), Positives = 40/115 (34%), Gaps = 13/115 (11%)

Query: 82  KPPPPKPKEPEKPK-APEKPKEPEKPKQPEKPKEPEKPKQ----PEKP-------KEPEK 129
           + PP +    + PK  P KP  PE P  P + +EP +PK     P  P       K P  
Sbjct: 327 RVPPKESDAADGPKPVPTKPVTPEAPSPPIE-EEPPQPKAVVPRPLSPYTAYEDLKPPTS 385

Query: 130 PKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
           P        P   K      +P +P   P P      P   PA   A    P  P
Sbjct: 386 PIPTPPSSSPASSKSVDAVAKPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPLSP 440

Length = 576

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 18/66 (27%), Positives = 20/66 (30%)

Query: 120 QPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
            P  P  P              P  P       +P +P    PPPPA   AP P P    
Sbjct: 40  DPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPN 99

Query: 180 VPCHPP 185
            P  P 
Sbjct: 100 APPPPA 105

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 32/101 (31%), Positives = 47/101 (46%), Gaps = 13/101 (12%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEK----------PKQPEKPKEPEKPKQPEKPKE 126
           E ++ +PP  K KE EK     + +E EK          PK+P K K P K K+P    E
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPP---E 192

Query: 127 PEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP 167
            EK ++  +     KP+EP   +E EK ++  K      +P
Sbjct: 193 EEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSP 233

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome partitioning]

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEK--------PKEPEKPKQPEKPKEPEK 129
             K  P P    +      P KP+E     +  +        P EP   K  E+    ++
Sbjct: 38  HHKKAPIPFLSNQGTGSLLPNKPEEVWSYIKALEDRQIGVPQPTEPAAVKDAERLTPEQR 97

Query: 130 P-----KEPEKPKEPEKPKEPAKPKEPEKPKEPPKPS--------PPPPAPAPAPAPAPA 176
                 +  +K +  +  ++P + +  E+P+   + +          P  P P P     
Sbjct: 98  QLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATTVQTQPVKPKPRPEKPQP 157

Query: 177 PAPVPCHPPV 186
            AP P   PV
Sbjct: 158 VAPAPAPEPV 167

Length = 264

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 18/84 (21%), Positives = 20/84 (23%), Gaps = 3/84 (3%)

Query: 76  LEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
           L P            P  P     P  P  P QP  PK  +    P  P  P K   P  
Sbjct: 359 LLPSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPP--PAKASPPIP 416

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPK 159
                  +    P        P  
Sbjct: 417 VPAEP-TEPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 14/35 (40%), Positives = 15/35 (42%)

Query: 154 PKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
                  +PP PAP PA   APAPA      P  V
Sbjct: 52  AASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAV 86

Length = 767

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 15/30 (50%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 157 PPKPSPPPPA-PAPAPAPAPAPAPVPCHPP 185
           PP P+P P A  APAPA A   AP     P
Sbjct: 60  PPAPAPLPAALVAPAPAAASIAAPAAVPAP 89

Length = 767

>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit Tim54

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 100 PKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPK 159
           P +P +P +P   +   +  + E     E P EP +      P+E     E E  K    
Sbjct: 194 PLDPPEPPEPTVDEAAPET-EVEATPAAESPAEPAEETAETTPEETEDAPEEENNK---P 249

Query: 160 PSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             PP P P  +P   P  AP+P   P 
Sbjct: 250 VKPPVPKPYISPDEYP-SAPLPPELPQ 275

Mitochondrial function depends on the import of hundreds of different proteins synthesised in the cytosol. Protein import is a multi-step pathway which includes the binding of precursor proteins to surface receptors, translocation of the precursor across one or both mitochondrial membranes, and folding and assembly of the imported protein inside the mitochondrion. Most precursor proteins carry amino-terminal targeting signals, called pre-sequences, and are imported into mitochondria via import complexes located in both the outer and the inner membrane (IM). The IM complex, TIM, is made up of at least two proteins which mediate translocation of proteins into the matrix by removing their signal peptide and another pair of proteins, Tim54 and Tim22, that insert the polytopic proteins, that carry internal targetting information, into the inner membrane. Length = 377

>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 7/138 (5%)

Query: 35   QDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAI---LEPEKPKPPPPKPKEP 91
             DQ  DE+  T   K      +  ++      E + +  +     E +    P       
Sbjct: 1223 SDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQ 1282

Query: 92   EKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEP 151
              P  P K  + E     +     +K  +          K+ +K     + K   K K  
Sbjct: 1283 YSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKS----EKKTARKKKSK 1338

Query: 152  EKPKEPPKPSPPPPAPAP 169
             + K+            P
Sbjct: 1339 TRVKQASASQSSRLLRRP 1356

Length = 1388

>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           E E  +    + ++ + P+   + KE +K + P+   E EKPK   K  +P KPK
Sbjct: 98  EEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152

The YqfQ-like protein family includes the B. subtilis YqfQ protein, also known as VrrA, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 146 and 237 amino acids in length. There are two conserved sequence motifs: QYGP and PKLY. Length = 155

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 112 PKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
            ++ +       PK+  KP   +    P+     A    P +     +PS P  A  PA 
Sbjct: 363 TQKGDDASGGRGPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAG 422

Query: 172 AP----APAPAPVPCHPPV 186
            P       PA VP +PP 
Sbjct: 423 TPPTVSVDPPAAVPVNPPS 441

Length = 614

>gnl|CDD|236712 PRK10547, PRK10547, chemotaxis protein CheA; Provisional

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 11/52 (21%), Positives = 15/52 (28%), Gaps = 3/52 (5%)

Query: 132 EPEK---PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPV 180
           E ++         P+E A+         P    PP    A   APA      
Sbjct: 218 EADQITFETAVAAPQEKAEETTEVVEVSPKISVPPVLKLAAEQAPAGRVERE 269

Length = 670

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 12/44 (27%), Positives = 13/44 (29%)

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
              P    E A            K + P PA   APA   A  P
Sbjct: 88  GAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 38.5 bits (89), Expect = 0.002
 Identities = 17/77 (22%), Positives = 25/77 (32%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
           P  P+E   P  P+        +    PK  ++P      ++P       +P   P    
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQP 233

Query: 169 PAPAPAPAPAPVPCHPP 185
             PA  P P      PP
Sbjct: 234 VQPAQQPTPQNPAQQPP 250

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 25/148 (16%)

Query: 77   EPEKPKPPPPKPKEPEKPKAP--EKPK---EPEKPKQPEKPKEPE---KPKQPEKPKEPE 128
            EP+  +    +   PE   AP  E+P+   E +     E  +  E   +P+      E  
Sbjct: 903  EPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEA 962

Query: 129  KPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP------------AP--- 173
                     EPE   +PA P   E   E    +   P  APA             AP   
Sbjct: 963  AETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVEHNHATAPMTR 1022

Query: 174  APAPAPVPCHPPVGVCCRECY--EGRGG 199
            APAP  VP  P      R  +  EG+G 
Sbjct: 1023 APAPEYVPEAPRHSDWQRPTFAFEGKGA 1050

Length = 1068

>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 66  GEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK 125
           G   I  + +L   +    P   +E    + P     P + K+ +KPK+ + PK P+ PK
Sbjct: 104 GTKGIHHLQMLHHPQLGDNPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPK 163

Query: 126 EPEKPKEPEKP-KEPEKPKEPAKPKEPEKPKE 156
             +  K+     +  + P    + K   K ++
Sbjct: 164 PKKPKKKGSVSNRSVKMPGIDPRSKPDWKSQD 195

This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA. It seems likely that the this domain mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain. Length = 301

>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 61  KLCCKGEGSIKSIAILEPEKPKPPPPKPKEPEKP-KAPEKPKEPEKPKQPEK-PKEPEKP 118
           KL  K +  +  I   + +K   PP  P+    P KAP   +  E   +  K   EP++ 
Sbjct: 487 KLIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEG 546

Query: 119 KQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP-APAPAPAPAP 177
            +P + KE E  K+P   KE +  K P   K+PE PK+P      P  P  P     P  
Sbjct: 547 GKPGETKEGEVGKKPGPAKEHKPSKIPTLSKKPEFPKDPKH----PKDPEEPKKPKRPRS 602

Query: 178 APVPCHPP 185
           A  P  P 
Sbjct: 603 AQRPTRPK 610

Length = 943

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 30/110 (27%), Positives = 36/110 (32%), Gaps = 1/110 (0%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P K     P    P    A         P QP        P         + P+  +  
Sbjct: 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             P  P        P +P +PP P+  P  P P PAPAPA AP    PP 
Sbjct: 729 SAP-SPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 22/111 (19%), Positives = 33/111 (29%), Gaps = 6/111 (5%)

Query: 81  PKPPPPKP-KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
           P PP   P + P  P      +     +Q ++ +   K K+ E P    + +      E 
Sbjct: 400 PPPPASAPQQAPAVPLPETTSQLLAARQQLQRAQGATKAKKSE-PAAASRARPVNSALER 458

Query: 140 EKPKEP---AKPKEPEKPKEPP-KPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
                P   A  K P K +    K + P        A   A      H   
Sbjct: 459 LASVRPAPSALEKAPAKKEAYRWKATNPVEVKKEPVATPKALKKALEHEKT 509

Length = 647

>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated

 Score = 38.0 bits (88), Expect = 0.003
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 115 PEKPKQPEKPKEP-EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPP----PPAPAP 169
            +  K     +    +P   +   EP+KP+  AK  EP+   + PK + P        AP
Sbjct: 140 RQTAKTQTAERPATTRPARKQAVIEPKKPQATAK-TEPKPVAQTPKRTEPAAPVASTKAP 198

Query: 170 APAPAPAPAPVPCHPPV 186
           A    PAP       PV
Sbjct: 199 AATSTPAPKETATTAPV 215

Length = 328

>gnl|CDD|235665 PRK05996, motB, flagellar motor protein MotB; Validated

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 15/100 (15%), Positives = 24/100 (24%), Gaps = 6/100 (6%)

Query: 82  KPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEK-----PKEPEKP 136
              PP     +   A      P    Q   P    +PK+    +E               
Sbjct: 197 DLLPPGQAREQAQGAKSATAAPATVPQA-APLPQAQPKKAATEEELIADAKKAATGEPAA 255

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPA 176
              +  K    P + +K  E  + +        A   A  
Sbjct: 256 NAAKAAKPEPMPDDQQKEAEQLQAAIAQAIGGVAGKLAEG 295

Length = 423

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 9/41 (21%), Positives = 12/41 (29%)

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
           P +  +    K           +P PP   PA  P P    
Sbjct: 279 PSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARR 319

Length = 656

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 13/38 (34%), Positives = 13/38 (34%)

Query: 144 EPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           E A                   A APAPAPA A AP  
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAA 230

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 38.3 bits (90), Expect = 0.003
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 150 EPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           E          +P   APA A A APAPAP     P
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAP 228

Length = 547

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 10/52 (19%), Positives = 11/52 (21%)

Query: 126 EPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAP 177
           E E   +             A P              P    APA   A  P
Sbjct: 80  EGESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADP 131

Length = 464

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 97  PEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKE 156
           P  P+E   P  P+        +    PK  ++P   + P +    + PA+  + +  ++
Sbjct: 174 PNPPREAPAPGLPKTFTSSHGHRHRHAPKPTQQP-TVQNPAQQPTVQNPAQQPQQQPQQQ 232

Query: 157 PPKPSPPPPAPAPAPAPAPAPA 178
           P +P+  P    PA  P     
Sbjct: 233 PVQPAQQPTPQNPAQQPPQTEQ 254

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed

 Score = 38.5 bits (89), Expect = 0.003
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 92  EKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEP 151
           E   A E  K  E     E P         E   EP++ +  E+ K PE+ K+PA  +  
Sbjct: 54  ETAPADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEE-KQPAAKQVE 112

Query: 152 EKPKEPPKPSPPPPAPAPAPAPA 174
           + P EP   S P  A + +  PA
Sbjct: 113 KAPAEPATVSNPDNATS-SSTPA 134

Length = 592

>gnl|CDD|217428 pfam03213, Pox_P35, Poxvirus P35 protein

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 142 PKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           P   +   E ++  +   P  P PAPAP P P P P+P  
Sbjct: 25  PDLKSLVIEADEVDDVKDPPKPSPAPAPLPKPKPDPSPSY 64

Length = 325

>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 28/127 (22%), Positives = 45/127 (35%), Gaps = 6/127 (4%)

Query: 65  KGEGSIKSIAILEPEKPKPPPPK--PKEPEKPKAPEKPKEPEKPKQPEKPKE----PEKP 118
           + EG +KS       + K PPPK   KE  +P+  +K  E  + KQ    +       + 
Sbjct: 476 EKEGKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRT 535

Query: 119 KQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPA 178
              ++PK+PEK    ++        EP         + PP         +  P+P   P 
Sbjct: 536 VGKKQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPK 595

Query: 179 PVPCHPP 185
                  
Sbjct: 596 SSVPPAA 602

This family consists of AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental retardation syndrome) nuclear proteins. These proteins have been linked to human diseases such as acute lymphoblastic leukaemia and mental retardation. The family also contains a Drosophila AF4 protein homologue Lilliputian which contains an AT-hook domain. Lilliputian represents a novel pair-rule gene that acts in cytoskeleton regulation, segmentation and morphogenesis in Drosophila. Length = 1154

>gnl|CDD|191179 pfam05053, Menin, Menin

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 23/121 (19%), Positives = 37/121 (30%), Gaps = 13/121 (10%)

Query: 65  KGEGSIKS-IAILEPEKPKPPPPKPKEPEKPKAPE----KPKEPEKPKQPEKPKEPEKPK 119
           + +  I+  + I  PEK      + KE ++    E    + + P +  + ++P   E P 
Sbjct: 446 RFDYQIRQKVVIKLPEK------EAKESKEAAGEEAREGRRRGPRRESKSQEPSGGESP- 498

Query: 120 QPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
            PE P                  KE A                  P P  +  P     P
Sbjct: 499 NPELPANNNNSNSNNNNNNGADRKEAAATTGNATTTSN-GSGTSVPLPVSSEPPQHKEGP 557

Query: 180 V 180
           V
Sbjct: 558 V 558

MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23. Length = 618

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 14/24 (58%), Positives = 14/24 (58%)

Query: 157 PPKPSPPPPAPAPAPAPAPAPAPV 180
           P  P PPP    PAPAP PA  PV
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPPV 24

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 1/59 (1%)

Query: 128 EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           E+ +E E+ +E E    PA      +    PK       P     P     PV   P  
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQR-QEPEKEAQPVNVQPAQ 283

Length = 382

>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           PE   P P  P E ++    E     EKPK P  P  P+  +  ++P+ P K +E   P
Sbjct: 182 PETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPK--QSAKEPQLPPKERERRVP 238

Length = 463

>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 24/106 (22%), Positives = 40/106 (37%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
            +PK PP K    +K + PE+ K+ +  ++  K K  E     E+ KE +  K+ E    
Sbjct: 173 SRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTS 232

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHP 184
           P +  E  +  E  +        P P     +P    +       P
Sbjct: 233 PMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRP 278

This protein, which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved. Length = 506

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 29/113 (25%), Positives = 36/113 (31%), Gaps = 5/113 (4%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPK----EPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
               K     P  P    AP  P            P     P   +  +   +P +  + 
Sbjct: 668 GWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQG 727

Query: 134 EKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA-PAPAPAPAPAPVPCHPP 185
                P        P EP+ P +P      PP P  PAPA APA AP P  P 
Sbjct: 728 ASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPS 780

Length = 824

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 37.7 bits (88), Expect = 0.004
 Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 5/66 (7%)

Query: 99  KPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPP 158
                     P      +  K   +  +   P           P   AKP     P+  P
Sbjct: 119 DTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKP-----PEPAP 173

Query: 159 KPSPPP 164
              PPP
Sbjct: 174 AAKPPP 179

Length = 418

>gnl|CDD|227665 COG5373, COG5373, Predicted membrane protein [Function unknown]

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPK--QPEKPKEPEKPKEPEK 135
           PE  +  P      E   +PE P        P   +E E P   QP     P     P  
Sbjct: 57  PEAAEAAPLPAAA-ESIASPEVPPPV----PPAPAQEGEAPAAEQPSAV--PAPSAAP-A 108

Query: 136 PKEPEKPKEPAKPKEPEK 153
           P EP +P   A P     
Sbjct: 109 PAEPVEPSLAANPFAAAI 126

Length = 931

>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 77   EPEKPKPP--PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEK-PKQPEKPKEPEKPKEP 133
            EP+ PKPP   P   +P+    P+  K+P  P  P    E  + PK  E+ KE +  K  
Sbjct: 1020 EPQAPKPPTQDPDGSKPKDKVDPKDNKDPLTP--PGSDDENGETPKGNEEKKEEQPDKGA 1077

Query: 134  EKPKEPEK 141
              P    K
Sbjct: 1078 NLPNTGTK 1085

Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PMID:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PMID:8798645). Length = 1111

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 9/118 (7%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPE-------KPKQPEKPKEPEKPKQPEKPKEPEKP 130
            +K     P     E    PE   + +          +PE P+ P+ P+   +P+ P + 
Sbjct: 94  SQKTSTFSPCQSGYEASTDPEYIPDLQPDPSLWGTAPKPE-PQPPQAPESQPQPQTPAQK 152

Query: 131 KEPEKPKEPEKPKEPAKPKEPEKPKE-PPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
               +  E +  +    P+ P+ P++  P+  PP  A  P   P   P   P  P   
Sbjct: 153 MLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQGH 210

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 38.2 bits (89), Expect = 0.004
 Identities = 20/93 (21%), Positives = 25/93 (26%), Gaps = 1/93 (1%)

Query: 101 KEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKP 160
                  +P     P    +    +    P        P  P     P  P      P P
Sbjct: 59  AAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPP 118

Query: 161 SPPPPA-PAPAPAPAPAPAPVPCHPPVGVCCRE 192
             PPPA P P+PAP  +    P   P       
Sbjct: 119 PTPPPASPPPSPAPDLSEMLRPVGSPGPPPAAS 151

Length = 1352

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 83  PPPPKPKEPEKPKAPEKPKEPE-KPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEK 141
                  +P     P  P EPE  P +P KPK  EKPK   KP++  +     KP+    
Sbjct: 79  DAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKPKPQQKVEAPPAPKPEPKPV 138

Query: 142 PKEPAKPK 149
            +E A P 
Sbjct: 139 VEEKAAPT 146

Length = 226

>gnl|CDD|225499 COG2948, VirB10, Type IV secretory pathway, VirB10 components [Intracellular trafficking and secretion]

 Score = 37.8 bits (88), Expect = 0.004
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 3/53 (5%)

Query: 139 PEKPKEPAKPKEPE---KPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
            +  K+     +P    +   PP P  P   P P P P    APV     V  
Sbjct: 46  LQGEKKRINNTQPPSNVERGTPPLPPLPDDPPLPPPLPVDLGAPVLPDQQVEE 98

Length = 360

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 12/44 (27%), Positives = 13/44 (29%)

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           E       A              + P PAPA A APA A     
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAA 236

Length = 547

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 37.9 bits (89), Expect = 0.004
 Identities = 12/44 (27%), Positives = 12/44 (27%)

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
               P   A P              P PA A APA A   A   
Sbjct: 195 AAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAA 238

Length = 547

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 11/36 (30%), Positives = 12/36 (33%)

Query: 144 EPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
               P+    P          PAP P P  AP PA 
Sbjct: 392 LHNAPQAAPAPSAAAPEPKHQPAPEPRPVLAPTPAS 427

Length = 584

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 10 VLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCS--PEKIRDKLC 63
          +    + C+ C KKV+K L K P +     D +T  V +         EK++  + 
Sbjct: 2  LRVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIE 57

Length = 62

>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR)

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 92  EKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEP 151
           +KP A  +    +K +  E  K PEK   P   K+ +KPK+ EK KE EK ++  K KE 
Sbjct: 164 DKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEK-KEKEKERDKDKKKEV 222

Query: 152 EKPKEPPKPSPPPPAPAPAPAPA 174
           E  K         PA A + A A
Sbjct: 223 EGFKSLLLALDDSPASAASVAEA 245

This family consists of several bovine specific leukaemia virus receptors which are thought to function as transmembrane proteins, although their exact function is unknown. Length = 561

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.53
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.48
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.38
KOG4656	247	consensus Copper chaperone for superoxide dismutas	98.81
PRK10671	834	copA copper exporting ATPase; Provisional	98.19
PLN02957	238	copper, zinc superoxide dismutase	98.12
TIGR00003	68	copper ion binding protein. This model describes a	97.93
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	97.3
PTZ00449	943	104 kDa microneme/rhoptry antigen; Provisional	96.92
PTZ00449	943	104 kDa microneme/rhoptry antigen; Provisional	96.74
PRK10671	834	copA copper exporting ATPase; Provisional	96.67
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	96.48
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	96.24
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	95.45
COG1888	97	Uncharacterized protein conserved in archaea [Func	93.18
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	92.91
TIGR02052	92	MerP mercuric transport protein periplasmic compon	90.21
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	85.89
PF13732	84	DUF4162: Domain of unknown function (DUF4162)	80.01

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.53  E-value=3.5e-14  Score=106.05  Aligned_cols=67  Identities=33%  Similarity=0.500  Sum_probs=62.1

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL   76 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV   76 (255)
                      +++.+|+|+|||+||+.+|++.|+.+.||.++.+|.++++|||.|. ++++.|+++|++.+++   ++++|
T Consensus         4 ~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~-~~p~~vl~~l~k~~~k---~~~~~   70 (73)
T KOG1603|consen    4 IKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGN-VDPVKLLKKLKKTGGK---RAELW   70 (73)
T ss_pred             ccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEe-cCHHHHHHHHHhcCCC---ceEEe
Confidence            5689999999999999999999999999999999999999999999 9999999999997756   56555

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.48  E-value=1.4e-13  Score=97.61  Aligned_cols=58  Identities=34%  Similarity=0.470  Sum_probs=53.5

Q ss_pred             EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcC
Q 025287           10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGE   67 (255)
Q Consensus        10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKgg   67 (255)
                      +|+| +|+|.+|+++|+++|.+++||+++++|+.+++|+|+++.  ++.++|+++|++.|+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy   61 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGY   61 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTS
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCc
Confidence            6899 999999999999999999999999999999999999972  356999999999876

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.38  E-value=2e-12  Score=96.40  Aligned_cols=63  Identities=22%  Similarity=0.290  Sum_probs=56.8

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |+++.|+| +|+|+||+++|+++|.+++||.+|++|+..++++|+.+  .++.++|+++|.+.|++
T Consensus         1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~   66 (71)
T COG2608           1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYK   66 (71)
T ss_pred             CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCC
Confidence            45789999 99999999999999999999999999999966666654  37999999999999987

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=98.81  E-value=1.3e-08  Score=91.81  Aligned_cols=76  Identities=22%  Similarity=0.389  Sum_probs=64.5

Q ss_pred             CCCCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCCCC
Q 025287            1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPEK   80 (255)
Q Consensus         1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVspep   80 (255)
                      |+.+-..+++|.|.|+|.+|++.|+++|..+.||++|+||+.++.|.|.+. +.+..|.++|+..|+    ++-|.-...
T Consensus         1 mtSd~~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts-~p~s~i~~~le~tGr----~Avl~G~G~   75 (247)
T KOG4656|consen    1 MTSDDTYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETS-VPPSEIQNTLENTGR----DAVLRGAGK   75 (247)
T ss_pred             CCcCCceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEcc-CChHHHHHHHHhhCh----heEEecCCc
Confidence            455445678999999999999999999999999999999999999999998 899999999997554    455555543


Q ss_pred             C
Q 025287           81 P   81 (255)
Q Consensus        81 p   81 (255)
                      +
T Consensus        76 p   76 (247)
T KOG4656|consen   76 P   76 (247)
T ss_pred             h
Confidence            3

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.19  E-value=3.6e-06  Score=86.91  Aligned_cols=59  Identities=22%  Similarity=0.377  Sum_probs=52.9

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| +|+|.+|+++|+++|.+++||.++.+|++  +++|++. .+.+.|.++|++.|++
T Consensus         3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~-~~~~~i~~~i~~~Gy~   62 (834)
T PRK10671          3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGT-ASAEALIETIKQAGYD   62 (834)
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEec-CCHHHHHHHHHhcCCc
Confidence            4689999 99999999999999999999999999994  5666666 7899999999988875

>PLN02957 copper, zinc superoxide dismutase

Probab=98.12  E-value=1.9e-05  Score=70.98  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=58.6

Q ss_pred             EEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCC
Q 025287            8 TMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEP   78 (255)
Q Consensus         8 t~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVsp   78 (255)
                      ++.|.|+|+|.+|+++|+++|.+++||.++.+|+.+++++|.+. .+...|+.+|++.++.    ++++..
T Consensus         7 ~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~-~~~~~I~~aIe~~Gy~----a~~~~~   72 (238)
T PLN02957          7 LTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGS-SPVKAMTAALEQTGRK----ARLIGQ   72 (238)
T ss_pred             EEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCc----EEEecC
Confidence            67788899999999999999999999999999999999999986 7888899999987764    566654

>TIGR00003 copper ion binding protein

Probab=97.93  E-value=0.00012  Score=46.70  Aligned_cols=61  Identities=13%  Similarity=0.310  Sum_probs=50.3

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGE   67 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKgg   67 (255)
                      +++.|.| +|+|..|...|++.|..+.++..+.+++..+++.|...  ..+...+...|...++
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~   65 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGY   65 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCC
Confidence            4578999 99999999999999999999999999999999998753  1356667666665554

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.30  E-value=0.0006  Score=70.68  Aligned_cols=61  Identities=18%  Similarity=0.342  Sum_probs=54.6

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cC-HHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CS-PEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vd-pekLv~aL~kKggk   68 (255)
                      .+..|.| +|||..|+.+|+ +|.+++||.++.+|+.+++++|..+.  .+ .+.+..+++..|+.
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~   66 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYS   66 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCcc
Confidence            3578999 999999999999 99999999999999999999998751  45 68899999998886

>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional

Probab=96.92  E-value=0.0054  Score=62.68  Aligned_cols=10  Identities=30%  Similarity=0.172  Sum_probs=4.2

Q ss_pred             HHHHHHhcCC
Q 025287           59 RDKLCCKGEG   68 (255)
Q Consensus        59 v~aL~kKggk   68 (255)
                      +++|.++..+
T Consensus       485 ikklikkskk  494 (943)
T PTZ00449        485 IKKLIKKSKK  494 (943)
T ss_pred             HHHHHHHhhc
Confidence            3344444444

>PTZ00449 104 kDa microneme/rhoptry antigen; Provisional

Probab=96.74  E-value=0.0092  Score=61.04  Aligned_cols=69  Identities=46%  Similarity=1.041  Sum_probs=31.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 025287           89 KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPE---------KPKEPEKPKEPEKPKEPAKPKEPEKPKEP  157 (255)
Q Consensus        89 ~~pe~p~~pe~p~~p~~p~~pe~P~~pe~P~~pekpk~pe---------~p~~pekp~~pe~p~~pe~p~~p~~p~~~  157 (255)
                      +.|+-|+.|+-|++|+.|+.|+.|+.++.|..|..|+.||         .|..++.||.|..|..|+.|+.|+.|+-+
T Consensus       577 K~Pe~PK~Pk~PKdPksPK~PK~Prspq~P~~PkSPk~Pe~~d~PkSPK~PespksPKsP~sPqrP~SPkRPEsPKiP  654 (943)
T PTZ00449        577 KKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRPSSPERPEGPKII  654 (943)
T ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            4455555555555555555555555444444444333222         22222333344444444444444444433

>PRK10671 copA copper exporting ATPase; Provisional

Probab=96.67  E-value=0.005  Score=64.06  Aligned_cols=60  Identities=18%  Similarity=0.359  Sum_probs=52.8

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      .+.|.| +|+|.+|...|++.|.+++||.++.+++.++++.|.+. .+.+.+.+.|.+.|+.
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~-~s~~~I~~~I~~~Gy~  160 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGS-ASPQDLVQAVEKAGYG  160 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEcc-CCHHHHHHHHHhcCCC
Confidence            567889 99999999999999999999999999999999998765 6788888888876554

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=96.48  E-value=0.0063  Score=64.63  Aligned_cols=62  Identities=18%  Similarity=0.314  Sum_probs=56.2

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      .++.|.| +|.|.+|..+|++.|.+++||+++++|+.++++.|..+  ...+-++++.|...+..
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~  210 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFE  210 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhccc
Confidence            4789999 99999999999999999999999999999999999875  26788999999987765

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=96.24  E-value=0.014  Score=60.33  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=48.5

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      .+.|+| +|+|.+|..+|+++|.+++||.++.+++.++++.|..+....+.+.+.+...|+.
T Consensus        54 r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~  115 (741)
T PRK11033         54 RYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFS  115 (741)
T ss_pred             eEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccc
Confidence            567889 9999999999999999999999999999999988875411125555666655443

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=95.45  E-value=0.024  Score=60.42  Aligned_cols=61  Identities=20%  Similarity=0.373  Sum_probs=54.0

Q ss_pred             eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCCccceeEEeCC
Q 025287           14 DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEGSIKSIAILEP   78 (255)
Q Consensus        14 ~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk~IK~IEIVsp   78 (255)
                      +|+|..|.+.|+++|...+||.++.|++.++..+|..+ .++++.|++.|+..|++    +++++.
T Consensus         2 gmtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ied~gf~----~~~~~~   63 (951)
T KOG0207|consen    2 GMTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIEDMGFE----ASLLSD   63 (951)
T ss_pred             CccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhhcccce----eeeccc
Confidence            79999999999999999999999999999999888764 47999999999998775    666554

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.18  E-value=0.39  Score=38.82  Aligned_cols=72  Identities=15%  Similarity=0.172  Sum_probs=51.0

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEE-------EcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIF-------DEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL   76 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~V-------Dlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV   76 (255)
                      +...++|-| -=|-+-=.-.+-+.|++|+||+.|.+       +-.+=++||+|+.+|-+.|.+.|.+.|+ +|.+|.-|
T Consensus         4 ~iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg-~IHSiDev   82 (97)
T COG1888           4 GIRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGG-AIHSIDEV   82 (97)
T ss_pred             cceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCC-eeeehhhh
Confidence            355566666 33334455667788999999877654       2346678889977999999999999766 67777544


Q ss_pred             C
Q 025287           77 E   77 (255)
Q Consensus        77 s   77 (255)
                      -
T Consensus        83 v   83 (97)
T COG1888          83 V   83 (97)
T ss_pred             h
Confidence            3

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=92.91  E-value=0.35  Score=39.07  Aligned_cols=73  Identities=18%  Similarity=0.167  Sum_probs=49.5

Q ss_pred             CceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCccceeEEeC
Q 025287            5 KVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILE   77 (255)
Q Consensus         5 ~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVs   77 (255)
                      +++.++|-|-.-=+==.-.+-++|++++||..|.+     |..+  =+|||+|..+|.+.|.++|.+.|+ +|.+|.-|.
T Consensus         3 ~irRlVLDVlKP~~p~i~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg-~IHSIDeVv   81 (95)
T PF02680_consen    3 GIRRLVLDVLKPHEPSIVELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGG-VIHSIDEVV   81 (95)
T ss_dssp             SEEEEEEEEEEESSS-HHHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT--EEEEEEEEE
T ss_pred             ceeEEEEEeecCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCC-eEEeeeeee
Confidence            45667777733333445678899999999888774     3333  346667876999999999998766 688886554


Q ss_pred             C
Q 025287           78 P   78 (255)
Q Consensus        78 p   78 (255)
                      .
T Consensus        82 a   82 (95)
T PF02680_consen   82 A   82 (95)
T ss_dssp             E
T ss_pred             e
Confidence            4

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=90.21  E-value=3  Score=29.35  Aligned_cols=59  Identities=19%  Similarity=0.248  Sum_probs=43.2

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhc
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKG   66 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKg   66 (255)
                      .+.+.+ +++|.+|...++..+....|+....+++....+.+...  ..+...+...+...+
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   85 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAG   85 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcC
Confidence            456777 99999999999999999999999999888887666521  134444444444433

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=85.89  E-value=4.4  Score=22.67  Aligned_cols=37  Identities=24%  Similarity=0.531  Sum_probs=31.6

Q ss_pred             eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEE
Q 025287           14 DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKV   50 (255)
Q Consensus        14 ~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG   50 (255)
                      +++|.+|...++..+..+.++....+++....+.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   42 (63)
T cd00371           6 GMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEY   42 (63)
T ss_pred             CeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEE
Confidence            8899999999999999999988888887777766654

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PF13732 DUF4162: Domain of unknown function (DUF4162)

Probab=80.01  E-value=5.6  Score=29.25  Aligned_cols=47  Identities=28%  Similarity=0.347  Sum_probs=34.8

Q ss_pred             HhcCCCceeEEEEcCCCeEEEE--EeecCHHHHHHHHHHhcCCccceeEEeCC
Q 025287           28 LCKFPQIQDQIFDEKTNTVRIK--VVCCSPEKIRDKLCCKGEGSIKSIAILEP   78 (255)
Q Consensus        28 L~kI~GV~sV~VDlk~~kVTVe--G~~vdpekLv~aL~kKggk~IK~IEIVsp   78 (255)
                      |..++||.++..+. ++.++|.  .. .+..+|++.|...|.  |.++++..|
T Consensus        26 l~~~~~v~~v~~~~-~~~~~i~l~~~-~~~~~ll~~l~~~g~--I~~f~~~~P   74 (84)
T PF13732_consen   26 LEELPGVESVEQDG-DGKLRIKLEDE-ETANELLQELIEKGI--IRSFEEEEP   74 (84)
T ss_pred             HhhCCCeEEEEEeC-CcEEEEEECCc-ccHHHHHHHHHhCCC--eeEEEEcCC
Confidence            88999999998763 4435554  33 678999999998754  888877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-18
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	7e-18
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	3e-14
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	6e-14
3gdb_A	937	Endo-D, putative uncharacterized protein SPR0440;	2e-09
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	9e-11
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	2e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	2e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	2e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	4e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	6e-10
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	1e-09
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	2e-09
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	3e-09
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	3e-08
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	1e-05
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-09
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	1e-07
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	4e-06
3iox_A	497	AGI/II, PA; alpha helix, PPII helix, supersandwich	2e-05
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	2e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	4e-08
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	1e-07
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	3e-06
2grx_C	229	Protein TONB; beta barrel, outer membrane, heteroc	7e-04
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	3e-08
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	2e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	2e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	3e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	7e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	9e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	9e-07
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	1e-06
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	3e-06
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	8e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	9e-07
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	3e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	9e-07
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	6e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-05
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	1e-06
2wvr_C	546	DNA replication factor CDT1; DNA replication licen	2e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-06
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	1e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	2e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	7e-05
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	9e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-06
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	1e-05
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	4e-05
2wd6_A	349	Agglutinin receptor; cell adhesion, secreted, V-re	2e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	7e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	8e-05
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	8e-05
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	8e-05
1x9d_A	538	Endoplasmic reticulum mannosyl-oligosaccharide 1,	8e-05
1kxf_A	264	Sindbis virus capsid protein; chymotrypsin-like se	1e-04
1eys_C	382	Photosynthetic reaction center; membrane protein c	1e-04
3pki_A	355	NAD-dependent deacetylase sirtuin-6; ADP ribose, s	2e-04
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	3e-04
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	3e-04
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	5e-04
3ecq_A	1531	Protein SPR0328, endo-alpha-N-acetylgalactosaminid	8e-04

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 83.1 bits (204), Expect = 3e-18
 Identities = 21/124 (16%), Positives = 28/124 (22%), Gaps = 5/124 (4%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPK----QPEKPKEPEKP-K 131
            PE             +    E  K+ E     E   E  +      +   P   E    
Sbjct: 26  VPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATT 85

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCR 191
           E  +     KP+E A     E P    KP       A   A        P          
Sbjct: 86  ETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKE 145

Query: 192 ECYE 195
              +
Sbjct: 146 VQPD 149

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 81.9 bits (201), Expect = 7e-18
 Identities = 16/114 (14%), Positives = 25/114 (21%), Gaps = 2/114 (1%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
              + E+   P       E      +    E  KQ E     E   +  +          
Sbjct: 17  LYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETAS 76

Query: 134 EKPKEP--EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
               E    +  E A   +PE+         P     P         P   +  
Sbjct: 77  PASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQG 130

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 71.1 bits (173), Expect = 3e-14
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 2/98 (2%)

Query: 90  EPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE--PEKPKEPAK 147
             +      + +E   P+      E    +      E +K  E E  +E   EK +  A 
Sbjct: 11  HHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVAT 70

Query: 148 PKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
             E   P      +      A A  P    + V    P
Sbjct: 71  ASETASPASNEAATTETAEAASAAKPEEKASEVVAETP 108

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 70.0 bits (170), Expect = 6e-14
 Identities = 16/101 (15%), Positives = 22/101 (21%), Gaps = 4/101 (3%)

Query: 89  KEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK----E 144
            E    +  E           E      +    E  K+ E     E   E  +      E
Sbjct: 14  LENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASE 73

Query: 145 PAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
            A P   E        +     P    +   A  P     P
Sbjct: 74  TASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKP 114

>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937

 Score = 56.9 bits (136), Expect = 2e-09
 Identities = 20/147 (13%), Positives = 38/147 (25%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
           E  +        ++  +  A     E +     E   +PE   Q ++ K   +  + EK 
Sbjct: 86  ETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKE 145

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGVCCRECYEG 196
            +P+ PK   K  +P++ K           P      A     V                
Sbjct: 146 VQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKAS 205

Query: 197 RGGGPCYDLGYGQTRHYDGYCGRPVYE 223
           +                    G   ++
Sbjct: 206 KEAKVQALSNTNSKAKDHASVGGEEFK 232

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 59.8 bits (144), Expect = 9e-11
 Identities = 16/77 (20%), Positives = 25/77 (32%)

Query: 85  PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKE 144
                     K   +        QP  P  P+ P  P+ P  P+ P  P++P  P+ P  
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNN 256

Query: 145 PAKPKEPEKPKEPPKPS 161
           P  P   +        +
Sbjct: 257 PDNPDNGDNNNSDNPDA 273

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 15/67 (22%), Positives = 24/67 (35%)

Query: 70  IKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEK 129
           +K             P  P  P+ P  P+ P  P+ P  P++P  P+ P  P+ P   + 
Sbjct: 206 LKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDN 265

Query: 130 PKEPEKP 136
                  
Sbjct: 266 NNSDNPD 272

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 59.1 bits (142), Expect = 2e-10
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
                    +P  P  P+ P  P+ P  P+ P  P++P  P+ P  P+ P   +      
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN 270

Query: 141 KP 142
             
Sbjct: 271 PD 272

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 58.7 bits (141), Expect = 2e-10
 Identities = 16/75 (21%), Positives = 26/75 (34%)

Query: 91  PEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKE 150
                     K+  +        +P  P  P+ P  P+ P  P+ P  P++P  P  P  
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNN 256

Query: 151 PEKPKEPPKPSPPPP 165
           P+ P      +   P
Sbjct: 257 PDNPDNGDNNNSDNP 271

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 57.9 bits (139), Expect = 4e-10
 Identities = 17/76 (22%), Positives = 24/76 (31%)

Query: 88  PKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAK 147
                     ++  E       ++P  P+ P  P  P  P  P  P  P EP  P  P  
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNN 256

Query: 148 PKEPEKPKEPPKPSPP 163
           P  P+        +P 
Sbjct: 257 PDNPDNGDNNNSDNPD 272

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 57.5 bits (138), Expect = 6e-10
 Identities = 14/69 (20%), Positives = 23/69 (33%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
                  +         P  P  P+ P  P+ P  P+ P  P++P  P+ P  P+ P   
Sbjct: 204 NFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNG 263

Query: 140 EKPKEPAKP 148
           +        
Sbjct: 264 DNNNSDNPD 272

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 16/84 (19%), Positives = 23/84 (27%)

Query: 63  CCKGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPE 122
                    +  +    K           ++P  P+ P  P  P  P  P  P  P +P 
Sbjct: 190 NEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPN 249

Query: 123 KPKEPEKPKEPEKPKEPEKPKEPA 146
            P  P  P  P+           A
Sbjct: 250 NPDNPNNPDNPDNGDNNNSDNPDA 273

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 55.6 bits (133), Expect = 2e-09
 Identities = 15/76 (19%), Positives = 20/76 (26%)

Query: 82  KPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEK 141
                     ++          ++P  P+ P  P  P  P  P  P  P EP  P  P  
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNN 256

Query: 142 PKEPAKPKEPEKPKEP 157
           P  P            
Sbjct: 257 PDNPDNGDNNNSDNPD 272

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 18/79 (22%), Positives = 25/79 (31%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A+   E  +    +  E       ++P  P+ P  P  P  P  P  P  P EP  P  P
Sbjct: 195 AVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNP 254

Query: 134 EKPKEPEKPKEPAKPKEPE 152
             P  P+            
Sbjct: 255 NNPDNPDNGDNNNSDNPDA 273

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 52.5 bits (125), Expect = 3e-08
 Identities = 18/91 (19%), Positives = 25/91 (27%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
                                     KQ  +        QP  P  P+ P  P+ P  P+
Sbjct: 181 IGIHWGGVPNEFNGAVFINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPD 240

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
            P  P +P  P+ P  P  P       +  P
Sbjct: 241 NPNNPDEPNNPDNPNNPDNPDNGDNNNSDNP 271

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274

 Score = 44.8 bits (105), Expect = 1e-05
 Identities = 15/75 (20%), Positives = 24/75 (32%)

Query: 103 PEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSP 162
                     K+  +        +P  P  P+ P  P+ P  P  P  P++P  P  P+ 
Sbjct: 197 FINENVRNFLKQNIEDINFANDDQPNNPDNPDNPNNPDNPNNPDNPNNPDEPNNPDNPNN 256

Query: 163 PPPAPAPAPAPAPAP 177
           P          +  P
Sbjct: 257 PDNPDNGDNNNSDNP 271

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 55.7 bits (132), Expect = 4e-09
 Identities = 21/103 (20%), Positives = 27/103 (26%)

Query: 65  KGEGSIKSIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKP 124
            G  +  ++         P    P  P K     K          +           EKP
Sbjct: 392 SGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKP 451

Query: 125 KEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP 167
             P KP  P KP    +      P  P   KEP  P+      
Sbjct: 452 TPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 51.0 bits (120), Expect = 1e-07
 Identities = 18/94 (19%), Positives = 21/94 (22%)

Query: 86  PKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEP 145
                       + P  P K     K          +           EKP  P KP  P
Sbjct: 401 GATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAP 460

Query: 146 AKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
            KP    +    P P  P     P P        
Sbjct: 461 TKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 46.4 bits (108), Expect = 4e-06
 Identities = 19/100 (19%), Positives = 22/100 (22%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPA 146
           K   P                  + P  P K     K          +            
Sbjct: 390 KMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKE 449

Query: 147 KPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           KP  P KP  P KP+     P      AP     P  P  
Sbjct: 450 KPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTR 489

>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A Length = 497

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 3/94 (3%)

Query: 95  KAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKP 154
            A       + P  P K     K           K +    PK     ++P  P +P  P
Sbjct: 404 SATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG-KIRAVNVPKVT--KEKPTPPVKPTAP 460

Query: 155 KEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
            +P   +  P  PAP           P       
Sbjct: 461 TKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 32/114 (28%), Positives = 38/114 (33%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           S+ ++ P   +PP      PE    PE   EP      E P   EKPK   KPK     K
Sbjct: 36  SVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKK 95

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
             E+PK   KP E       E        S    A    P  + A  P      
Sbjct: 96  VQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRN 149

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 51.3 bits (122), Expect = 4e-08
 Identities = 31/111 (27%), Positives = 36/111 (32%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
            E P P  P       P   E P+  + P +P    EPE    PE PKE     E  KPK
Sbjct: 26  IELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPK 85

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
              KPK   K +E  K    P  S P              +         V
Sbjct: 86  PKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPV 136

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 50.1 bits (119), Expect = 1e-07
 Identities = 29/115 (25%), Positives = 39/115 (33%)

Query: 72  SIAILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPK 131
           ++      +P      P EP     PE    PE PK+     E  KPK   KPK  +K +
Sbjct: 38  TMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQ 97

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           E  K         PA P E   P      +       P  + A  P  +  + P 
Sbjct: 98  EQPKRDVKPVESRPASPFENTAPARLTSSTATAATSKPVTSVASGPRALSRNQPQ 152

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 30/106 (28%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
                 P P +P        P + E P+  + P EP    +PE    PE PKE     E 
Sbjct: 23  HQVIELPAPAQPISVTMVT-PADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEK 81

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
            KPK   KPK  +K +E PK    P    PA               
Sbjct: 82  PKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPARLTSST 127

>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex, inter-protein beta sheet, protein-protein, metal transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A {Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A Length = 229

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 13/94 (13%), Positives = 24/94 (25%)

Query: 94  PKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEK 153
            +  E P   +            +P Q  +P      +   +P+   +P + A     + 
Sbjct: 23  HQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKP 82

Query: 154 PKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVG 187
             +P     P       P     P       P  
Sbjct: 83  KPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFE 116

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 14/55 (25%), Positives = 21/55 (38%)

Query: 111 KPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPP 165
           +        QP  P  P+ P  P+ P  P++P  P  P  P+ P      +   P
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNP 265

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 20/55 (36%)

Query: 117 KPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAP 171
           +        +P  P  P+ P  P+ P  P +P  P+ P  P  P       +  P
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDNP 265

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 84  PPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEK 141
                   ++P  P+ P  P  P  P  P EP  P  P  P  P+          P+ 
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN-PDA 267

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 49.7 bits (118), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 17/53 (32%)

Query: 114 EPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPA 166
           E       ++P  P+ P  P  P  P  P EP  P  P  P  P         
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 263

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 14/54 (25%), Positives = 17/54 (31%)

Query: 102 EPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPK 155
           E       ++P  P+ P  P  P  P  P EP  P  P  P  P          
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN 264

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 100 PKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEK 153
               ++P  P+ P  P  P  P  P EP  P  P  P  P+          P+ 
Sbjct: 215 FANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN-PDA 267

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 1/58 (1%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
            +       +P  P+ P  P  P  P  P +P  P  P  P  P+          P+ 
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN-PDA 267

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 13/54 (24%), Positives = 18/54 (33%)

Query: 90  EPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPK 143
           E       ++P  P+ P  P  P  P  P +P  P  P  P  P+         
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSDN 264

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 13/53 (24%), Positives = 17/53 (32%)

Query: 120 QPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPA 172
           +       ++P  P+ P  P  P  P  P EP  P  P  P  P         
Sbjct: 211 EDINFANDDQPNNPDNPDNPNNPDNPNNPDEPNNPDNPNNPDNPDNGDNNNSD 263

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 49.0 bits (116), Expect = 8e-07
 Identities = 19/127 (14%), Positives = 38/127 (29%), Gaps = 25/127 (19%)

Query: 79  EKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEK------------PKQPEKPKE 126
           E+ K    + KE E+    +  KE ++  +     +               P+Q      
Sbjct: 836 EEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISF 895

Query: 127 PEKPK-EPEKP------------KEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAP 173
            +  +  P +             +EP++P    +     K    P P+P           
Sbjct: 896 IKDDRFVPVRKFKGNNGVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPS 955

Query: 174 APAPAPV 180
           A  P+ +
Sbjct: 956 ALQPSLI 962

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 48.7 bits (115), Expect = 9e-07
 Identities = 23/149 (15%), Positives = 40/149 (26%), Gaps = 36/149 (24%)

Query: 74  AILEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEP 133
           A+L          K  + EK    E+ K+  + K+ E+    +  K+ ++  E     + 
Sbjct: 813 AVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKY 872

Query: 134 EKPKE-------------------------PEKPKEPA---------KPKEPEKPKEPPK 159
                                         P +  +           +PKEP    E  +
Sbjct: 873 SSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVALIETVR 932

Query: 160 PSPPPPAPAPAP--APAPAPAPVPCHPPV 186
                 AP P P         P    P +
Sbjct: 933 QMKDVNAPLPTPFKVDDNVDFPSALQPSL 961

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 47.1 bits (111), Expect = 3e-06
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 11/82 (13%)

Query: 86  PKPKEPEKPKAPEKP-----------KEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPE 134
           P+  E    K  EK            K   K  + EK    E+ K+  + KE E+    +
Sbjct: 796 PRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKK 855

Query: 135 KPKEPEKPKEPAKPKEPEKPKE 156
             KE ++  E     +      
Sbjct: 856 GIKETKENDEEFYKNKYSSKPY 877

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 48.2 bits (114), Expect = 9e-07
 Identities = 22/107 (20%), Positives = 25/107 (23%), Gaps = 3/107 (2%)

Query: 81  PKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPE 140
           P+             A         P        P  P  P     P+            
Sbjct: 16  PRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTGDSVL--QR 73

Query: 141 KPKEPAKPKEPE-KPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
             + P  P      P       P P APA AP  A    P   H PV
Sbjct: 74  ILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAVPGLYHHPV 120

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 6e-06
 Identities = 14/102 (13%), Positives = 18/102 (17%), Gaps = 2/102 (1%)

Query: 85  PPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKE 144
                      +                     P        P  P  P     P+    
Sbjct: 8   HHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVTG 67

Query: 145 PAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
            +        + P  P     APA      P P      PP 
Sbjct: 68  DSVL--QRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPA 107

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 13/99 (13%), Positives = 15/99 (15%), Gaps = 6/99 (6%)

Query: 94  PKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEK 153
                                               P        P  P  PA    P+ 
Sbjct: 5   HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64

Query: 154 PKEPPKPSPPPPAP------APAPAPAPAPAPVPCHPPV 186
                        P      + APA      P P  P  
Sbjct: 65  VTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPAS 103

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 42.4 bits (99), Expect = 8e-05
 Identities = 9/94 (9%), Positives = 13/94 (13%), Gaps = 1/94 (1%)

Query: 95  KAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKP 154
            +                             +      P        P  P  P     P
Sbjct: 3   SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62

Query: 155 KEPPKPS-PPPPAPAPAPAPAPAPAPVPCHPPVG 187
                 S        P      + AP   +    
Sbjct: 63  DTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQP 96

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 22/109 (20%), Positives = 31/109 (28%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
           P K     P P  P             K  +P      ++ + P + +      E   P 
Sbjct: 22  PPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLRLSVDEVSSPS 81

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
            PE P  PA P   +K K+    +  PP    A           C    
Sbjct: 82  TPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQDTISELASCLQRA 130

>2wvr_C DNA replication factor CDT1; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens} PDB: 2klo_A* Length = 546

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 21/107 (19%), Positives = 32/107 (29%)

Query: 80  KPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEP 139
           + +P PP+   P+       P  P             K  +P      ++ + P + +  
Sbjct: 12  RRRPGPPRIAPPKLACRTPSPARPALRAPASATSGSRKRARPPAAPGRDQARPPARRRLR 71

Query: 140 EKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
               E + P  PE P  P  PSP        PA    P         
Sbjct: 72  LSVDEVSSPSTPEAPDIPACPSPGQKIKKSTPAAGQPPHLTSAQDQD 118

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 12/48 (25%), Positives = 16/48 (33%)

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
           +P +     +P + E P   P  S P PA A     A A         
Sbjct: 93  DPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 132 EPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           +P +    E+P +   P        P  P+   PAP  A APA A A + 
Sbjct: 93  DPSELAAKEEPAKEEAPAPTPAASAPA-PAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 14/47 (29%), Positives = 17/47 (36%)

Query: 142 PKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
           P E A  +EP K + P            A APAP  A  P      +
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAP-APAPAPAPAPAPVPCHPPV 186
            P+  +  AK +  ++    P P+   PAP A APAP  A AP      +
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 43.0 bits (101), Expect = 7e-05
 Identities = 16/51 (31%), Positives = 18/51 (35%)

Query: 129 KPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
            P   E   + E  KE A    P      P  + P P  A APA A A   
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.7 bits (100), Expect = 9e-05
 Identities = 10/48 (20%), Positives = 12/48 (25%)

Query: 141 KPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
            P       + E  KE      P  +     A APAP           
Sbjct: 91  TPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAA 138

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 47.2 bits (112), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 16/47 (34%)

Query: 142 PKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPVGV 188
           P E      P             PA   APA APAPAP    P   V
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPV 140

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 17/46 (36%), Positives = 19/46 (41%)

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           P E E    PA     +        +P  PA APAPAPA A    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAP 139

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 45.3 bits (107), Expect = 1e-05
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 126 EPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVP 181
           + E  ++  +P         A P         P  +P P   +  PA     APV 
Sbjct: 91  DVEPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAPVT 146

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 15/46 (32%), Positives = 17/46 (36%), Gaps = 1/46 (2%)

Query: 144 EPAKPKEPEKPKEPPKPSPPPPAPAPAPA-PAPAPAPVPCHPPVGV 188
           EP + +    P         P A   APA PA APAP P       
Sbjct: 93  EPIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAA 138

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 124 PKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAP 167
              P KP  P  P +P    E      P  P    +P+PP   P
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349

>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG I/II protei surface adhesin, peptidoglycan-anchor; 2.30A {Streptococcus gordonii} Length = 349

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 14/43 (32%)

Query: 106 PKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKP 148
              P KP  P  P QP    E      P  P    +P  P K 
Sbjct: 306 IGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKT 348

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 42.6 bits (101), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 20/59 (33%)

Query: 128 EKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPPV 186
           + P       + ++ +E  K ++ E   +  K     P    A A A     V   P V
Sbjct: 77  DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSV 135

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 105 KPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPP 164
            P  P  P  P                 P  P  P     P    +P+K K+P  P+PP 
Sbjct: 1   DPAAPTSPGTPGVA-----AATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPR 55

Query: 165 PAPAPAPAPAPAPAPVPCHP 184
           PA   A   A          
Sbjct: 56  PAGDNATVAAGHATLREHLR 75

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.9 bits (98), Expect = 8e-05
 Identities = 17/89 (19%), Positives = 37/89 (41%)

Query: 77  EPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKP 136
            P   +   P+P+ P  P+    P + ++          +  ++ ++ ++  K   P KP
Sbjct: 15  RPAPVQRYIPQPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKP 74

Query: 137 KEPEKPKEPAKPKEPEKPKEPPKPSPPPP 165
           K+ +KPK+P + K+ +  K          
Sbjct: 75  KKTQKPKKPTQKKKSKPGKRMRNCMKIEN 103

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 7  TTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKL 62
                + + C  C   +K  L   P I    FD +   + ++    +P  I + L
Sbjct: 6  YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVE-SSVAPSTIINTL 60

>1x9d_A Endoplasmic reticulum mannosyl-oligosaccharide 1, 2-alpha-mannosidase; substrate analogue, glycosyl hydrolase; HET: SMD; 1.41A {Homo sapiens} SCOP: a.102.2.1 PDB: 1fo3_A* 1fo2_A* 1fmi_A Length = 538

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 15/72 (20%), Positives = 22/72 (30%)

Query: 115 PEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPA 174
           P +  +    +E  K +E      PE   +           EP + +  P   A  P   
Sbjct: 12  PSQDLKDGTQEEATKRQEAPVDPRPEGDPQRTVISWRGAVIEPEQGTELPSRRAEVPTKP 71

Query: 175 PAPAPVPCHPPV 186
           P P       PV
Sbjct: 72  PLPPARTQGTPV 83

>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase, wild type, viral protein; 2.38A {Sindbis virus} SCOP: b.47.1.3 PDB: 1ld4_A 3j0f_A Length = 264

 Score = 41.7 bits (97), Expect = 1e-04
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 1/107 (0%)

Query: 80  KPKPPPPKPKEPE-KPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPKE 138
           +P P P     P  + +A   P       Q ++           +   P+ P+    P++
Sbjct: 12  RPFPAPTAMWRPRRRRQAAPMPARNGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQ 71

Query: 139 PEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAPVPCHPP 185
            ++  +     +  KP+E  K  P    P      A           
Sbjct: 72  KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118

>1eys_C Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: a.138.1.2 Length = 382

 Score = 41.8 bits (97), Expect = 1e-04
 Identities = 14/72 (19%), Positives = 18/72 (25%)

Query: 109 PEKPKEPEKPKQPEKPKEPEKPKEPEKPKEPEKPKEPAKPKEPEKPKEPPKPSPPPPAPA 168
                   +   P      E          PE P +     E       P  +    +  
Sbjct: 307 GLYKTAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVE 366

Query: 169 PAPAPAPAPAPV 180
           PAP    APAP 
Sbjct: 367 PAPVEEVAPAPA 378

>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A* Length = 355

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 1/86 (1%)

Query: 76  LEPEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEK 135
           LE      P    +       P  PK   K + P +          ++P       EP  
Sbjct: 271 LEIPAWDGPRVLERALPPLPRPPTPKLEPKEESPTRINGSIPAGPKQEPCAQHNGSEPAS 330

Query: 136 PKEPEKPKEPAKPKEPEKPKEPPKPS 161
           PK  E+P  PA  + P++ K    PS
Sbjct: 331 PK-RERPTSPAPHRPPKRVKAKAVPS 355

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 1  MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRD 60
          M           + + C  C   +K  L   P I    FD +   + ++    +P  I +
Sbjct: 1  MTTNDTYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVE-SSVAPSTIIN 59

Query: 61 KL 62
           L
Sbjct: 60 TL 61

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 10/47 (21%), Positives = 18/47 (38%)

Query: 3  EKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIK 49
          +  + T+   V + C  C   V+K L     +QD     +   V + 
Sbjct: 15 QGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVH 61

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 3/102 (2%)

Query: 78  PEKPKPPPPKPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPKEPEKPKEPEKPK 137
            +  +    K  E E P        P       K       K  ++      P +   P 
Sbjct: 339 FDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQ--AAYPPQGYAPP 396

Query: 138 EPEKPKEPAKPKEPEKPKEPPKPSPPPPAPAPAPAPAPAPAP 179
               P +   P+       PP+  PPPP  AP P  AP  AP
Sbjct: 397 PQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAP-PQGAPPAAP 437

>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL; 2.90A {Streptococcus pneumoniae} Length = 1531

 Score = 39.5 bits (91), Expect = 8e-04
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 87  KPKEPEKPKAPEKPKEPEKPKQPEKPKEPEKPKQPEKPK-EPEKPKEPEKPKEPEKPKEP 145
            P +     A  K  +    + P+  ++   P+  + PK E E     ++    EKPKE 
Sbjct: 13  LPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEKEKPAEEKPKED 72

Query: 146 A-KPKEPEKPKE 156
                +PE PK 
Sbjct: 73  KPAAAKPETPKT 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.52
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.46
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.37
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.36
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.29
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.28
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.26
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.25
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.22
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.21
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.2
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.19
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.19
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.19
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.17
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.16
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.14
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.14
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.13
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.11
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.1
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.1
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.1
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.09
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.09
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.08
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.07
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.04
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.01
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.0
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	98.96
2kkh_A	95	Putative heavy metal transporter; zinc transport,	98.96
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.92
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	98.87
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	98.87
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.85
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	98.78
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.76
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.63
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.54
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.23
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	95.86
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	94.46
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	92.06
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	84.65

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.52  E-value=4.2e-14  Score=99.43  Aligned_cols=67  Identities=22%  Similarity=0.317  Sum_probs=60.1

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCC
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEP   78 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVsp   78 (255)
                      |++++|+|+|+|.+|+++|+++|.+++|| ++++|+.+++++|++. ++.+.|+++|++.|++    ++++++
T Consensus         1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~----~~~~~~   67 (68)
T 3iwl_A            1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGKT----VSYLGL   67 (68)
T ss_dssp             -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTCSC----EEEEEC
T ss_pred             CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEec-CCHHHHHHHHHHcCCc----eEecCC
Confidence            45788999999999999999999999999 9999999999999997 8999999999988775    666653

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.46  E-value=4e-13  Score=94.71  Aligned_cols=65  Identities=23%  Similarity=0.335  Sum_probs=58.9

Q ss_pred             CCCCCceEEEEEEeccChhhHHHHHHHHhcCC-CceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFP-QIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~-GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      |++  |.+++|+|+|+|.+|+++|+++|.+++ ||.++++|+.+++++|.+. ++.+.|+++|++.|++
T Consensus         1 m~~--m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~   66 (73)
T 1cc8_A            1 MAE--IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKE   66 (73)
T ss_dssp             -CC--CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSC
T ss_pred             CCC--ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCC
Confidence            553  457899999999999999999999999 9999999999999999987 8999999999988775

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.37  E-value=2.5e-12  Score=90.35  Aligned_cols=63  Identities=14%  Similarity=0.233  Sum_probs=58.0

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk   68 (255)
                      |++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|+.+.  ++.+.|+++|++.|++
T Consensus         1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   66 (74)
T 3dxs_X            1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFE   66 (74)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred             CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence            56889999 999999999999999999999999999999999998742  6899999999998875

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.36  E-value=2.8e-12  Score=88.68  Aligned_cols=62  Identities=16%  Similarity=0.353  Sum_probs=56.7

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|... .++.+.|+++|++.|++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~   65 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH   65 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCE
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCc
Confidence            4689999 99999999999999999999999999999999999942 27899999999998775

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.29  E-value=8.2e-12  Score=88.55  Aligned_cols=61  Identities=23%  Similarity=0.304  Sum_probs=56.9

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      .|.+++|+| +|+|.+|+.+|+++|.+ +||.++.+|+.+++++|+++  +.+.|+++|++.|+.
T Consensus         3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~--~~~~i~~~i~~~Gy~   64 (73)
T 3fry_A            3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE--DVDKYIKAVEAAGYQ   64 (73)
T ss_dssp             CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG--GHHHHHHHHHHTTCE
T ss_pred             ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC--CHHHHHHHHHHcCCc
Confidence            378899999 99999999999999999 99999999999999999976  889999999998774

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.9e-11  Score=92.92  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=61.7

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEeCCC
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAILEPE   79 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIVspe   79 (255)
                      +.+++|+|+|+|.+|+++|+++|.+++||.++.||+.+++++|.+. ++.+.|+++|++.|++    +.++...
T Consensus        18 ~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~-~~~~~i~~~i~~~Gy~----~~~~~~~   86 (98)
T 2crl_A           18 LCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTT-LPSQEVQALLEGTGRQ----AVLKGMG   86 (98)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEES-SCHHHHHHHHHTTTSC----EEEEESC
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEe-CCHHHHHHHHHHhCCc----eEEccCC
Confidence            5678899999999999999999999999999999999999999987 8999999999987764    6666543

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.26  E-value=9e-12  Score=82.81  Aligned_cols=60  Identities=22%  Similarity=0.331  Sum_probs=55.7

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|.++|.+.|++
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~G~~   62 (64)
T 2xmm_A            2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGYE   62 (64)
T ss_dssp             CEEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECS-SCHHHHHHHHHHTTCC
T ss_pred             eEEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEec-CCHHHHHHHHHHcCCC
Confidence            367999 99999999999999999999999999999999999976 8899999999988765

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.25  E-value=3.3e-11  Score=79.83  Aligned_cols=63  Identities=17%  Similarity=0.299  Sum_probs=56.1

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |..++|+| +|+|.+|+.+|+++|..++||.++.+|+.+++++|..+  .++.+.|.+.|.+.|+.
T Consensus         1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   66 (69)
T 2qif_A            1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYD   66 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCE
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            45678999 99999999999999999999999999999999999864  25778899999988765

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.22  E-value=5.7e-11  Score=82.22  Aligned_cols=63  Identities=16%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      |++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+....+.|+++|.+.|++
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~   65 (73)
T 1mwy_A            2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYS   65 (73)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCE
T ss_pred             CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCc
Confidence            67889999 9999999999999999999999999999999999987522357788889888775

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.21  E-value=1.2e-11  Score=84.37  Aligned_cols=59  Identities=20%  Similarity=0.363  Sum_probs=54.3

Q ss_pred             EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|.+.|++
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~-~~~~~i~~~i~~~Gy~   61 (66)
T 2roe_A            2 LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGT-ADPKALVQAVEEEGYK   61 (66)
T ss_dssp             BCEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSC-CCHHHHHHHHHTTTCE
T ss_pred             EEEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCC-CCHHHHHHHHHHcCCC
Confidence            46899 99999999999999999999999999999999999655 8899999999988764

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.20  E-value=9.2e-11  Score=79.81  Aligned_cols=63  Identities=13%  Similarity=0.299  Sum_probs=56.8

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.|+.
T Consensus         4 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   69 (71)
T 2l3m_A            4 MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYD   69 (71)
T ss_dssp             EEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            67889999 99999999999999999999999999999999999864  25778899999987763

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.19  E-value=6.1e-11  Score=80.95  Aligned_cols=67  Identities=21%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |+.. |.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.+.|.+.|+.
T Consensus         1 ~~~~-~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   70 (76)
T 1opz_A            1 MLSE-QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH   70 (76)
T ss_dssp             CCCC-CEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred             CCcc-ceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence            6676 78899999 99999999999999999999999999999999999864  25778899999988764

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.19  E-value=1.1e-10  Score=78.93  Aligned_cols=62  Identities=16%  Similarity=0.351  Sum_probs=54.8

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|+++|.+.|++
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~   66 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYH   66 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence            4578999 99999999999999999999999999999999999864 25778899999988774

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.19  E-value=6.1e-11  Score=79.16  Aligned_cols=61  Identities=15%  Similarity=0.317  Sum_probs=54.7

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|.++|.+.|+.
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~   64 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQE   64 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCC
Confidence            467999 99999999999999999999999999999999999865 24678899999988875

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.17  E-value=1.3e-10  Score=79.09  Aligned_cols=63  Identities=22%  Similarity=0.259  Sum_probs=56.7

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      +++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|++.|.+.|++
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   67 (72)
T 1osd_A            2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYP   67 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCC
T ss_pred             ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            35789999 99999999999999999999999999999999999875  25778899999998875

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.16  E-value=4.8e-11  Score=88.36  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=57.6

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      .+.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. ++.+.|+++|.+.|+.
T Consensus        20 ~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~-~~~~~i~~~i~~~Gy~   83 (85)
T 2k2p_A           20 QGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGV-SDAAHIAEIITAAGYT   83 (85)
T ss_dssp             --CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESC-CCHHHHHHHHHHTTCC
T ss_pred             cccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEec-CCHHHHHHHHHHcCCC
Confidence            467789999 99999999999999999999999999999999999987 8999999999998775

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.14  E-value=1.5e-10  Score=83.25  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ||.....+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.|+.
T Consensus         3 ~~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   73 (84)
T 1q8l_A            3 MAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP   73 (84)
T ss_dssp             SSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCC
T ss_pred             ccccCceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence            3444567789999 99999999999999999999999999999999999874  25778899999988775

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.14  E-value=1.7e-10  Score=78.49  Aligned_cols=61  Identities=18%  Similarity=0.355  Sum_probs=55.2

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+.  ++.+.|+++|.+.|+.
T Consensus         4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   67 (72)
T 1aw0_A            4 ETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFD   67 (72)
T ss_dssp             EEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCC
Confidence            578999 999999999999999999999999999999999998752  5678899999988774

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.13  E-value=1.4e-10  Score=79.36  Aligned_cols=65  Identities=26%  Similarity=0.339  Sum_probs=56.6

Q ss_pred             CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk   68 (255)
                      |++.   ++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+.  ++.+.|.++|.+.|+.
T Consensus         1 m~~~---~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   68 (75)
T 1yjr_A            1 MGDG---VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFE   68 (75)
T ss_dssp             CCCC---CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCE
T ss_pred             CCce---EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            5555   678999 999999999999999999999999999999999998651  4567888999988774

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.11  E-value=4.5e-10  Score=77.55  Aligned_cols=62  Identities=11%  Similarity=0.262  Sum_probs=55.8

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      .+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|.+.|+.
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   66 (75)
T 3cjk_B            2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD   66 (75)
T ss_dssp             EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCC
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence            4678999 99999999999999999999999999999999999874  25778899999998775

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.10  E-value=3.6e-10  Score=75.75  Aligned_cols=60  Identities=12%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.+.|.+.|++
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   64 (68)
T 1cpz_A            2 QEFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQ   64 (68)
T ss_dssp             CEEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSC
T ss_pred             EEEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            46899 99999999999999999999999999999999999875  25778899999988775

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.10  E-value=2.8e-10  Score=79.60  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=57.7

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ++.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.|+.
T Consensus         6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   72 (79)
T 1kvi_A            6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD   72 (79)
T ss_dssp             TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCc
Confidence            467889999 99999999999999999999999999999999999864  25678899999998875

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.10  E-value=1.1e-10  Score=79.89  Aligned_cols=57  Identities=19%  Similarity=0.304  Sum_probs=52.2

Q ss_pred             EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      ++|+| +|+|.+|+.+|+++|.++ ||.++.+|+.+++++|.++ .+ +.|+++|++.|+.
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~-~~-~~i~~~i~~~Gy~   60 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETE-NL-DSVLKKLEEIDYP   60 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECS-CH-HHHHHHHHTTTCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEEC-CH-HHHHHHHHHcCCc
Confidence            68999 999999999999999999 9999999999999999876 44 7899999988775

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.09  E-value=1.7e-10  Score=80.49  Aligned_cols=63  Identities=14%  Similarity=0.279  Sum_probs=57.4

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|...  .++.+.|.++|.+.|+.
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   67 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFG   67 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSC
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence            77899999 99999999999999999999999999999999999864  25678899999998875

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.09  E-value=1.9e-10  Score=78.08  Aligned_cols=60  Identities=25%  Similarity=0.463  Sum_probs=53.6

Q ss_pred             EEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            9 MVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         9 ~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      ++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ ..+.+.|+++|.+.|+.
T Consensus         2 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~   63 (69)
T 2kt2_A            2 THLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYK   63 (69)
T ss_dssp             CCEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSE
T ss_pred             EEEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCc
Confidence            46889 99999999999999999999999999999999999864 25778899999988764

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.08  E-value=2e-10  Score=76.89  Aligned_cols=63  Identities=14%  Similarity=0.339  Sum_probs=55.6

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      +.+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|.+.|+.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   67 (71)
T 2ldi_A            2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYT   67 (71)
T ss_dssp             CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            45678999 99999999999999999999999999999999999864  25678899999987764

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.07  E-value=5e-10  Score=76.09  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=55.1

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+ .++.+.|.++|.+.|++
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~   65 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFD   65 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCC
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCc
Confidence            478999 99999999999999999999999999999999999864 25788899999998875

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.04  E-value=8.8e-10  Score=81.25  Aligned_cols=59  Identities=12%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHh
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCK   65 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kK   65 (255)
                      ++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~   64 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAV   64 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhc
Confidence            3578999 99999999999999999999999999999999999864  25778899999988

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.01  E-value=6.6e-10  Score=77.15  Aligned_cols=63  Identities=14%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |.++.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|.+.|+.
T Consensus         2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   67 (80)
T 1jww_A            2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK   67 (80)
T ss_dssp             CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSE
T ss_pred             ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCe
Confidence            55788999 99999999999999999999999999999999999864  25778899999988764

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=98.96  E-value=1.7e-09  Score=74.52  Aligned_cols=56  Identities=16%  Similarity=0.300  Sum_probs=49.4

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|.+. .+    .+.|.+.|+.
T Consensus         4 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~-~~----~~~i~~~Gy~   60 (71)
T 2aj0_A            4 KTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGE-AS----IQQVEQAGAF   60 (71)
T ss_dssp             EEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEES-CC----HHHHHHHHTT
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEec-Cc----HHHHHHhCCC
Confidence            578999 99999999999999999999999999999999999976 33    4567777765

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=98.96  E-value=3.1e-09  Score=78.24  Aligned_cols=64  Identities=16%  Similarity=0.151  Sum_probs=57.8

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEee--cCHHHHHHHHHHhcCC
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVC--CSPEKIRDKLCCKGEG   68 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~--vdpekLv~aL~kKggk   68 (255)
                      .|.+++|+| +|+|.+|+.+|+++|..++||.++.+|+.+++++|..+.  ++.+.|+++|...|+.
T Consensus        14 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   80 (95)
T 2kkh_A           14 KLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLE   80 (95)
T ss_dssp             CSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCC
T ss_pred             ceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence            577889999 999999999999999999999999999999999998752  4678899999988875

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.92  E-value=3.2e-09  Score=82.24  Aligned_cols=62  Identities=16%  Similarity=0.232  Sum_probs=56.1

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      .+++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.|++
T Consensus        80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~  144 (149)
T 2ew9_A           80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFH  144 (149)
T ss_dssp             SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCE
T ss_pred             ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCc
Confidence            4678999 99999999999999999999999999999999999864  25788999999998874

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.87  E-value=7.2e-09  Score=90.77  Aligned_cols=61  Identities=20%  Similarity=0.410  Sum_probs=56.9

Q ss_pred             eEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      .+++|+|.|+|.+|+.+|+++|.+++||.++++|+.+++++|.+. ++.++|+++|++.|++
T Consensus         6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aI~~~Gy~   66 (222)
T 1qup_A            6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKD   66 (222)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCC
T ss_pred             eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEecc-CCHHHHHHHHHHcCCc
Confidence            457889999999999999999999999999999999999999987 8999999999998775

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=98.87  E-value=5.8e-09  Score=80.75  Aligned_cols=63  Identities=16%  Similarity=0.239  Sum_probs=56.2

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|.+.|++
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   68 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFE   68 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCc
Confidence            45889999 99999999999999999999999999999999999864  25678899999988764

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.85  E-value=4.7e-09  Score=81.90  Aligned_cols=62  Identities=15%  Similarity=0.275  Sum_probs=56.4

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ..+.|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|+++|.+.|+.
T Consensus        74 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~  138 (151)
T 1p6t_A           74 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK  138 (151)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCC
T ss_pred             cccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCC
Confidence            4678999 99999999999999999999999999999999999864  26789999999998875

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=98.78  E-value=1.3e-08  Score=90.93  Aligned_cols=62  Identities=19%  Similarity=0.404  Sum_probs=57.3

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      ..+++|+|.|+|.+|+.+|+++|.+++||.++++|+.+++++|.+. ++.+.|+++|++.|++
T Consensus         6 ~~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~-~~~~~I~~aIe~~Gy~   67 (249)
T 1jk9_B            6 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKD   67 (249)
T ss_dssp             CEEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTTCC
T ss_pred             ceeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecC-CCHHHHHHHHHHhCCC
Confidence            3457899999999999999999999999999999999999999987 8999999999988775

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.76  E-value=2.5e-08  Score=82.88  Aligned_cols=62  Identities=16%  Similarity=0.352  Sum_probs=56.3

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      .+++|+| +|+|.+|+.+|+++|.+++||.++.||+.+++++|..+  .++.+.|+++|.+.|+.
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~  186 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFE  186 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSC
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCc
Confidence            4678999 99999999999999999999999999999999999864  25788999999998875

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.63  E-value=4.7e-08  Score=81.23  Aligned_cols=61  Identities=18%  Similarity=0.418  Sum_probs=53.1

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHh
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCK   65 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kK   65 (255)
                      .|++++|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|..+  .++.+.|.++|...
T Consensus        18 ~~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~   81 (202)
T 2rop_A           18 HVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEAL   81 (202)
T ss_dssp             --CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTS
T ss_pred             ccEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            467789999 99999999999999999999999999999999999864  25677888888876

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.54  E-value=3e-07  Score=71.59  Aligned_cols=63  Identities=21%  Similarity=0.360  Sum_probs=55.1

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ++...|+| +|+|.+|+.+|+++|.+++||.++.+|+.+++++|...  .++.+.|.++|.+.|++
T Consensus         5 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~   70 (151)
T 1p6t_A            5 QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH   70 (151)
T ss_dssp             CEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred             ceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCc
Confidence            56678999 99999999999999999999999999999999999754  24678888889887764

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.23  E-value=1.9e-06  Score=86.18  Aligned_cols=61  Identities=18%  Similarity=0.302  Sum_probs=56.0

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      +++|+| +|+|.+|+.+|+++|.+++||+++++|+.+++++|+.+  .++.++|+++|++.|++
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~   66 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYG   66 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCE
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCc
Confidence            468999 99999999999999999999999999999999999864  26889999999998875

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=95.86  E-value=0.017  Score=45.78  Aligned_cols=73  Identities=19%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             CCCCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCcccee
Q 025287            1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSI   73 (255)
Q Consensus         1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~I   73 (255)
                      |+.++++.++|-|.--=+==.-.+-++|++++||..|.+     |..+  =+|||+|..+|-+.|.++|++.|+ +|-+|
T Consensus         1 ~~~~~iRRlVLDVlKPh~P~ivdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~Gg-vIHSI   79 (100)
T 3bpd_A            1 MSLKGLRRLVLDVLKPHEPKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG-VIHSV   79 (100)
T ss_dssp             --CCSEEEEEEEEEEESCSCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC-EEEEE
T ss_pred             CCcccceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEee
Confidence            778888999999832234456678899999999988874     3332  346667877999999999998765 78888


Q ss_pred             E
Q 025287           74 A   74 (255)
Q Consensus        74 E   74 (255)
                      .
T Consensus        80 D   80 (100)
T 3bpd_A           80 D   80 (100)
T ss_dssp             E
T ss_pred             e
Confidence            7

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=94.46  E-value=0.081  Score=41.74  Aligned_cols=73  Identities=21%  Similarity=0.204  Sum_probs=52.6

Q ss_pred             CCCCCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCCC--eEEEEEeecCHHHHHHHHHHhcCCcccee
Q 025287            1 MGEKKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKTN--TVRIKVVCCSPEKIRDKLCCKGEGSIKSI   73 (255)
Q Consensus         1 Ma~k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~~--kVTVeG~~vdpekLv~aL~kKggk~IK~I   73 (255)
                      |-.++++.++|-|---=+==.-.+-++|+++.||..|.+     |..+.  +|||+|..+|-+.|.++|.+.|+ +|.+|
T Consensus         1 ~~~~~irRlVLDVlKPh~p~i~d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg-~IHSI   79 (97)
T 2raq_A            1 MVAKGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGG-SIHSV   79 (97)
T ss_dssp             --CCSEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTC-EEEEE
T ss_pred             CcccCceEEEEEecCCCCCCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEee
Confidence            455677888888832233345678899999999888774     44433  45667866999999999998766 78888


Q ss_pred             E
Q 025287           74 A   74 (255)
Q Consensus        74 E   74 (255)
                      .
T Consensus        80 D   80 (97)
T 2raq_A           80 D   80 (97)
T ss_dssp             E
T ss_pred             e
Confidence            7

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=92.06  E-value=0.3  Score=38.43  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=48.8

Q ss_pred             CceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCccceeE
Q 025287            5 KVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSIA   74 (255)
Q Consensus         5 ~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~IE   74 (255)
                      +++.++|-|  .+|= ==.-.+-++|+++.||..|.+     |..+  =+|||+|..+|-+.|.++|++.|+ +|.+|.
T Consensus         3 ~irRlVLDVlKP~h~-P~ivd~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg-~IHSID   79 (96)
T 2x3d_A            3 AIRRLVLDVLKPIRG-TSIVDLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGC-AIHSID   79 (96)
T ss_dssp             CEEEEEEEEEEESSS-SCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTC-EEEEEE
T ss_pred             ceEEEEEEcccCCCC-CCHHHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCC-eEEeee
Confidence            355666666  3232 234567889999999988874     3332  345667877999999999998766 788887

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=84.65  E-value=11  Score=28.64  Aligned_cols=59  Identities=10%  Similarity=0.167  Sum_probs=42.0

Q ss_pred             hhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCc--cceeEEeCC
Q 025287           19 KCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGS--IKSIAILEP   78 (255)
Q Consensus        19 gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~--IK~IEIVsp   78 (255)
                      +=...|..+|.+|+||+-..+|..++++.|+-..-+.+.|.+.| ++.++.  |.++.++.-
T Consensus        17 ~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i-~~I~~i~GVlst~lvy~   77 (95)
T 2jsx_A           17 ERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTI-ESVRNVEGVLAVSLVYH   77 (95)
T ss_dssp             TSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHH-HHHTTSTTEEEEEESSC
T ss_pred             CCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHH-HHHhcCCCccEEeEEEE
Confidence            33789999999999995445576678888876545777888877 445543  666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	1e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	5e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.001
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	0.001

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (86), Expect = 1e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 7  TTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKL 62
                + + C  C   +K  L   P I    FD +   + ++    +P  I + L
Sbjct: 6  YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTL 60

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 5  KVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQI-FDEKTNTVRIKVVCCSPEKIRDKL 62
          ++      V + CS C   V KVL K      +I    +   V +       + I +K+
Sbjct: 2  EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKI 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.66
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.61
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.59
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.51
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.5
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.45
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.44
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.42
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.41
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.41
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.4
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.4
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.39
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.29
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	92.85
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	92.82
d1urra_	97	Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila	84.03
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	80.5

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.4e-16  Score=116.37  Aligned_cols=63  Identities=21%  Similarity=0.296  Sum_probs=59.3

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCC-CceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCc
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFP-QIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGS   69 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~-GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~   69 (255)
                      |+++.|+|+|||.+|+++|+++|.+|+ ||.+|++|+.+++|+|+|+ +++++|+++|++.|+++
T Consensus         3 ~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~-~~~~~i~~~i~~~G~~~   66 (72)
T d1cc8a_           3 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTT-LPYDFILEKIKKTGKEV   66 (72)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEES-SCHHHHHHHHHTTSSCE
T ss_pred             cEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeec-CCHHHHHHHHHHHCCcc
Confidence            789999999999999999999999995 9999999999999999999 99999999999876653

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=9.3e-16  Score=111.55  Aligned_cols=63  Identities=19%  Similarity=0.403  Sum_probs=59.3

Q ss_pred             ceEEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCc
Q 025287            6 VTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGS   69 (255)
Q Consensus         6 vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~   69 (255)
                      ...++|+|+|+|++|+++|+++|.+++||.+|.||+.+++|+|+|. +++++|+++|++.|+++
T Consensus         5 ~~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~-~~~~~i~~~I~~~G~~A   67 (72)
T d1qupa2           5 TYEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESS-VAPSTIINTLRNCGKDA   67 (72)
T ss_dssp             CEEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEES-SCHHHHHHHHHHTTCCC
T ss_pred             cEEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEee-CCHHHHHHHHHHhCCCE
Confidence            3568999999999999999999999999999999999999999998 99999999999988764

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.59  E-value=1.8e-15  Score=108.61  Aligned_cols=63  Identities=24%  Similarity=0.358  Sum_probs=57.4

Q ss_pred             EEEEEEeccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287            8 TMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL   76 (255)
Q Consensus         8 t~vLKV~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV   76 (255)
                      ++.|+|+|||.+|+++|+++|++++|| +|++|+.+++|+|+|+ +++++|+++|++.|+    .+++|
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~-~~~~~i~~~I~~~Gy----~a~li   64 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESE-HSMDTLLATLKKTGK----TVSYL   64 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEES-SCHHHHHHHHHTTTS----CEEEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEee-CCHHHHHHHHHHhCC----eEEEe
Confidence            468999999999999999999999998 5999999999999999 999999999987665    46665

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.51  E-value=7.5e-15  Score=104.04  Aligned_cols=60  Identities=22%  Similarity=0.348  Sum_probs=57.4

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      +++|+| ||+|++|+++|+++|.+++||.+|++|+.+++|+|++. ++.++|+++|.+.|++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~-~~~~~i~~~i~~~GY~   62 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSA-LGEEQLRTAIASAGHE   62 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESS-SCHHHHHHHHHHHCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccC-CCHHHHHHHHHHcCCC
Confidence            478999 99999999999999999999999999999999999988 9999999999998876

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.50  E-value=3.3e-14  Score=101.68  Aligned_cols=64  Identities=17%  Similarity=0.290  Sum_probs=59.4

Q ss_pred             ceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCCc
Q 025287            6 VTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEGS   69 (255)
Q Consensus         6 vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk~   69 (255)
                      |++.+|+| ||+|.+|+.+|+++|++++||.++++|+.+++|+|+.+  .++.++|+++|++.|+++
T Consensus         1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~   67 (69)
T d2qifa1           1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            56889999 99999999999999999999999999999999999974  278999999999998863

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.45  E-value=1.1e-13  Score=99.49  Aligned_cols=66  Identities=21%  Similarity=0.393  Sum_probs=59.8

Q ss_pred             CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |++.  .+++|+| ||+|.+|+.+|+++|.+++||.++++|+.+++++|+.+  ..+.++|+++|++.|++
T Consensus         2 ~s~~--~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~   70 (72)
T d1p6ta1           2 LSEQ--KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYH   70 (72)
T ss_dssp             CCCC--EEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCE
T ss_pred             CCCc--eEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCc
Confidence            4444  6899999 99999999999999999999999999999999999863  27899999999999886

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=1.1e-13  Score=99.91  Aligned_cols=62  Identities=16%  Similarity=0.266  Sum_probs=57.6

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe-ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV-CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~-~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| ||+|.+|+.+|+++|.+++||.+++||+.+++++|+.+ .++.++|+++|.+.|+.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~   65 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFD   65 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCC
Confidence            4689999 99999999999999999999999999999999999964 37899999999999885

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.3e-13  Score=98.23  Aligned_cols=64  Identities=13%  Similarity=0.266  Sum_probs=60.2

Q ss_pred             CceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            5 KVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         5 ~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      +|.+++|.| ||+|.+|+.+|+++|++++||.+++||+.+++|+|+.+  .++.++|+++|++.|++
T Consensus         6 ~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~   72 (79)
T d1kvja_           6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFD   72 (79)
T ss_dssp             TCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCE
T ss_pred             CceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            688999999 99999999999999999999999999999999999964  27999999999999886

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.9e-13  Score=99.89  Aligned_cols=68  Identities=16%  Similarity=0.268  Sum_probs=61.6

Q ss_pred             CCCCCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            1 MGEKKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         1 Ma~k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      |++.+-.++.|+| ||+|.+|+.+|+++|.+++||.+++||+.+++|+|..+  .++.+.|+++|++.|++
T Consensus         3 ~~~~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~   73 (84)
T d1q8la_           3 MAQAGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFP   73 (84)
T ss_dssp             SSSSSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCC
T ss_pred             cCCCCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCc
Confidence            4555677899999 99999999999999999999999999999999999965  27899999999998885

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.41  E-value=3.8e-13  Score=95.97  Aligned_cols=59  Identities=12%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             EEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287           10 VLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus        10 vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      .|+| ||+|.+|+.+|+++|++++||.+++||+.+++|+|+.+  .++.++|+++|.+.|++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~   64 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQ   64 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            6899 99999999999999999999999999999999999964  37899999999998885

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=3e-13  Score=97.71  Aligned_cols=62  Identities=16%  Similarity=0.235  Sum_probs=57.4

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| ||+|.+|+.+|+++|.+++||.+++||+.+++|+|+.+..+.++|+++|.+.|+.
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~   65 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYS   65 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCC
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCc
Confidence            3588999 9999999999999999999999999999999999998755678999999999886

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.40  E-value=4.5e-13  Score=96.54  Aligned_cols=62  Identities=23%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ++++|+| ||+|.+|+.+|+++|.+++||.+++||+.+++|+|+.+  .++.++|+++|.+.|++
T Consensus         3 qt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   67 (72)
T d1osda_           3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYP   67 (72)
T ss_dssp             EEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            4789999 99999999999999999999999999999999999975  27899999999999886

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=5.6e-13  Score=95.74  Aligned_cols=62  Identities=18%  Similarity=0.358  Sum_probs=57.4

Q ss_pred             eEEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            7 TTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         7 tt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      +.++|+| ||+|.+|+.+|+++|.+++||.+++||+.+++|+|..+  .++.++|+++|.+.|++
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~   67 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFD   67 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSE
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCC
Confidence            3589999 99999999999999999999999999999999999863  37899999999999886

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.29  E-value=5e-12  Score=92.41  Aligned_cols=61  Identities=15%  Similarity=0.280  Sum_probs=56.9

Q ss_pred             EEEEEE-eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcCC
Q 025287            8 TMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGEG   68 (255)
Q Consensus         8 t~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKggk   68 (255)
                      ++.|+| ||+|.+|+.+|+++|..++||.++.||+.+++|+|+.+  ..+.++|+++|.+.|++
T Consensus         3 k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~   66 (79)
T d1p6ta2           3 KAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYK   66 (79)
T ss_dssp             EEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCC
T ss_pred             EEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCc
Confidence            589999 99999999999999999999999999999999999974  36899999999998875

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.85  E-value=0.1  Score=38.96  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             CCceEEEEEEeccChhhHHHHHHHHhcCCCceeEEE-----EcCCC--eEEEEEeecCHHHHHHHHHHhcCCccceeEEe
Q 025287            4 KKVTTMVLKVDLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKTN--TVRIKVVCCSPEKIRDKLCCKGEGSIKSIAIL   76 (255)
Q Consensus         4 k~vtt~vLKV~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~~--kVTVeG~~vdpekLv~aL~kKggk~IK~IEIV   76 (255)
                      +|++.++|-|.--=..=.-.+-+.|++++||..|.+     |..+.  ++||+|..+|-+.|.+.|.+.|+ +|.+|.-|
T Consensus         2 ~~iRRlVLDVlKPh~P~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg-~IHSIDeV   80 (93)
T d2raqa1           2 KGLIRIVLDILKPHEPIIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGG-SIHSVDEV   80 (93)
T ss_dssp             CSEEEEEEEEECCSCSCHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTC-EEEEEEEE
T ss_pred             CceEEEEEEeecCCCCCHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCC-eEEEEeee
Confidence            357788888822233467788999999999888764     44433  45566766999999999998766 67788655


Q ss_pred             CC
Q 025287           77 EP   78 (255)
Q Consensus        77 sp   78 (255)
                      ..
T Consensus        81 ~a   82 (93)
T d2raqa1          81 VA   82 (93)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.82  E-value=0.12  Score=38.56  Aligned_cols=73  Identities=18%  Similarity=0.119  Sum_probs=52.7

Q ss_pred             CCceEEEEEE-eccChhhHHHHHHHHhcCCCceeEEE-----EcCC--CeEEEEEeecCHHHHHHHHHHhcCCccceeEE
Q 025287            4 KKVTTMVLKV-DLQCSKCYKKVKKVLCKFPQIQDQIF-----DEKT--NTVRIKVVCCSPEKIRDKLCCKGEGSIKSIAI   75 (255)
Q Consensus         4 k~vtt~vLKV-~M~C~gCakKIkKAL~kI~GV~sV~V-----Dlk~--~kVTVeG~~vdpekLv~aL~kKggk~IK~IEI   75 (255)
                      .+++.++|-| -=|= .=.-.+-+.|++++||..|.+     |..+  =++||+|..+|-+.|.++|.+.|+ +|.+|.-
T Consensus         2 ~~irRlVLDVlKPh~-p~~~~~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE~~Gg-~IHSIDe   79 (91)
T d3bpda1           2 KGLRRLVLDVLKPHE-PKTIVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGG-VIHSVDE   79 (91)
T ss_dssp             CSEEEEEEEEEEESC-SCHHHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTC-EEEEEEE
T ss_pred             CceeEEEEEeecCCC-CCHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCC-eEEEEhh
Confidence            4577888888 2243 445558899999999988874     3332  245667876999999999998766 6778765


Q ss_pred             eCC
Q 025287           76 LEP   78 (255)
Q Consensus        76 Vsp   78 (255)
                      |..
T Consensus        80 V~a   82 (91)
T d3bpda1          80 VVA   82 (91)
T ss_dssp             EEE
T ss_pred             eee
Confidence            543

>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.03  E-value=2.3  Score=30.14  Aligned_cols=74  Identities=7%  Similarity=0.091  Sum_probs=52.9

Q ss_pred             CCCCCceEEEEEE--eccChhhHHHHHHHHhcCCCceeEEEEcCCCeEEEEEe--ecCHHHHHHHHHHhcC--CccceeE
Q 025287            1 MGEKKVTTMVLKV--DLQCSKCYKKVKKVLCKFPQIQDQIFDEKTNTVRIKVV--CCSPEKIRDKLCCKGE--GSIKSIA   74 (255)
Q Consensus         1 Ma~k~vtt~vLKV--~M~C~gCakKIkKAL~kI~GV~sV~VDlk~~kVTVeG~--~vdpekLv~aL~kKgg--k~IK~IE   74 (255)
                      ||.+ |.+..|+|  .+.--|-..-+.+...++ ||+-..-|+.+++|.|...  .-+.++++++|++.+-  -.|.+|+
T Consensus         1 ~~~~-~~~~~~~V~G~VQGVGFR~~~~~~A~~l-~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~~p~~a~V~~i~   78 (97)
T d1urra_           1 VAKQ-IFALDFEIFGRVQGVFFRKHTSHEAKRL-GVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRIPNAKVSKAE   78 (97)
T ss_dssp             CTTC-EEEEEEEEEEECSSSSHHHHHHHHHHHH-TCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCSTTCEEEEEE
T ss_pred             CCce-EEEEEEEEEEEecCcCChHHHHHHHHHc-CCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCCCCCcEEEEEE
Confidence            7777 88888999  777888888887766665 7888888999998888653  2345556777766443  2266666


Q ss_pred             Ee
Q 025287           75 IL   76 (255)
Q Consensus        75 IV   76 (255)
                      +-
T Consensus        79 ~~   80 (97)
T d1urra_          79 FS   80 (97)
T ss_dssp             EC
T ss_pred             EE
Confidence            53

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=80.50  E-value=1  Score=33.04  Aligned_cols=53  Identities=11%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             EEEEEEeccChhh------HHHHHHHHhcCCCceeEEEEcCCCeEEEEEeecCHHHHHHHHHHhc
Q 025287            8 TMVLKVDLQCSKC------YKKVKKVLCKFPQIQDQIFDEKTNTVRIKVVCCSPEKIRDKLCCKG   66 (255)
Q Consensus         8 t~vLKV~M~C~gC------akKIkKAL~kI~GV~sV~VDlk~~kVTVeG~~vdpekLv~aL~kKg   66 (255)
                      .+.|.+.|+..+|      ...|+++|.+++||++|+|++.-+-     . -+++.+-...+.+.
T Consensus        42 ~V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~~~p-----~-W~~~~~s~~~r~~l  100 (102)
T d1uwda_          42 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELTFDP-----P-WTPERMSPELREKF  100 (102)
T ss_dssp             EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEECCSS-----C-CCGGGSCHHHHHHH
T ss_pred             ceEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEEecC-----C-CChHHCCHHHHHHc
Confidence            4566777777777      6789999999999999999864331     1 34455554454443